Citrus Sinensis ID: 010296

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
Protein Sequence
MKYKNTKKKGPAPRGKGKFSINQDPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSGPEESEGEEEEEETADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIKLS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccccccccccccEEEEEcccccEEEEEEcccEEEcccccccccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEcccccEEEEEEEcccEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEcccccEEEEccccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccHccccHHHHHHccccccccHcccccccEEEEEccccccEEEEEcccccEEEEEccccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEcccccEEEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEcccccccEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEEccccEEEEEEEcccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccccc
Coil and Loop (DISEMBL)
mkykntkkkgpaprgkgkfsinqdpffagepkkrrkidyddddiesadsedyddeveksgpeesegeeeeeeTADEKRKRVATAYLEKIREIARRekeeeedgdegrevgekegERDSLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVAlseddskgfsaskdgsilhwdvssgkgvkylwpseevlkshgakdpqgratkQSKHILALAVSsdgrylasggldrhiHLWDTRIQEHIqafpghrgpvscltfrqgtselfsgsfDRTVKIWNAEDRAYISTLFghqsevltidclrkervltvgrdrsmqlwkvpeesrlvfrapasslecccfisndeflsgsddgsIELWSLLrkkpvyivknahplldglknfeqdegkisnghsengnlnpgsyhsssaySWVSSVTvcggsdlaasgagngsVRLWAIesetkdiqplynlplvgfvnSLAFAKSGQFLIagvgqeprlgrwghlpaarngvlvhpikls
Flexible Loop (DISEMBL)
mkykntkkkgpaprgkgkfsinqdpffagepkkrrkidyddddiesadsedyddeveksgpeesegeeeeeetadekrKRVATAYLEKIReiarrekeeeedgdegrevgekegerdSLVAKILqqeqleesgrvrrviasrvqkpeatdefrVLLKHRQSVTavalseddskgfsaskdgsilhwdvssgkGVKYLWPSEEVLKShgakdpqgratKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLfghqsevltidclrkervltvgrdrsmqlwkvpeesrLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWghlpaarngvlvhpikls
Low Complexity Region (SEG)
MKYKNTkkkgpaprgkgkFSINQDPFFAGEPKKRRKidyddddiesadsedyddeveksgpeesegeeeeeeTADEKRKRVATAYLekireiarrekeeeedgdegrevgekegerdSLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGsyhsssayswvssvTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIKLS
Disordered region (IsUnstruct)
*******************************************************************************************************************************************************FRVLLKH***********************SILHWDVSSGKGVKYLWP**********************HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK****************************AYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVH*****
Disordered Region (DISOPRED)
****************************************************************************KRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIKLS
Disordered Region (DISEMBL)
****************GKFSINQDPFFAGEPKKRRKIDYDDDDIES*********************************RVATAYLEKIREIAR**********************DSLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEV*****************KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIKLS
Disordered Region (DISPRO)
**Y*NTKKKGPAPRGKGKFSINQDPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSGPEESEGEEEEEETADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVH*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKYKNTKKKGPAPRGKGKFSINQDPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSGPEESEGEEEEEETADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIKLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	513	2.2.26 [Sep-21-2011]
Q91WM3	475	U3 small nucleolar RNA-in	yes	no	0.762	0.823	0.393	1e-85
O43818	475	U3 small nucleolar RNA-in	yes	no	0.762	0.823	0.388	4e-83
Q9P7C0	524	Uncharacterized WD repeat	yes	no	0.884	0.866	0.308	8e-54
Q06506	573	Ribosomal RNA-processing	yes	no	0.826	0.739	0.255	2e-35
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.633	0.212	0.265	6e-20
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.549	0.224	0.263	4e-19
Q39836	325	Guanine nucleotide-bindin	no	no	0.575	0.907	0.269	1e-18
Q9LV28	326	Guanine nucleotide-bindin	no	no	0.508	0.800	0.285	3e-18
Q9C4Z6	326	Guanine nucleotide-bindin	no	no	0.563	0.886	0.256	3e-18
P49026	326	Guanine nucleotide-bindin	N/A	no	0.576	0.907	0.271	9e-18

>sp|Q91WM3|U3IP2_MOUSE U3 small nucleolar RNA-interacting protein 2 OS=Mus musculus GN=Rrp9 PE=1 SV=1

 Score =  317 bits (813), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 173/440 (39%), Positives = 257/440 (58%), Gaps = 49/440 (11%)

Query: 73  TADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQLEES 132
           TA EK+ R+A  YLE++R+       +EE+  E R   E +      VA  L+++ LE+ 
Sbjct: 74  TAQEKKLRLAKLYLEQLRQ-------QEEEKAEARAFEEDQ------VAGRLKEDVLEQR 120

Query: 133 GRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK 192
           GR+++ +A  +Q P  TD  RVL  H+ S+T + ++ DD   FSA+KD +I+ W V +G+
Sbjct: 121 GRLQKSVAKEIQAPAPTD-IRVLRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVETGR 179

Query: 193 GVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ 252
            +  +            K  QG+    S H+L +A+SSDG+YLASG   + I +W+ +  
Sbjct: 180 KLHVI--------PRAKKGAQGQPAGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSC 231

Query: 253 EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDC 312
           +H+  F GHR  VS L FR+GT +L+S S DR+VK+WNA + +Y+ TLFGHQ  V  +D 
Sbjct: 232 QHLYTFTGHRDAVSGLAFRKGTHQLYSTSHDRSVKVWNAAENSYVETLFGHQDAVAALDA 291

Query: 313 LRKERVLTV-GRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWS 371
           L +E  +T  GRD ++++WK+PEES+LVF     S++C   I+ +  +SG+DDGS+ LW 
Sbjct: 292 LSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALWG 351

Query: 372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC 431
           L +K+P+ + + AH L                 H E G   P          WVSSV   
Sbjct: 352 LSKKRPLALQREAHGL-----------------HGEPGLEQP---------FWVSSVAAL 385

Query: 432 GGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPR 491
             +DL A+G+ N  VRLW      + + PL ++PLVGF+NSL F+ +G FL+AGVGQE R
Sbjct: 386 LNTDLVATGSHNARVRLWQCGEGFRQLDPLCDIPLVGFINSLKFSSAGDFLVAGVGQEHR 445

Query: 492 LGRWGHLPAARNGVLVHPIK 511
           LGRW  +  ARN V + P++
Sbjct: 446 LGRWWRIKEARNSVCIIPLR 465

Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA.
Mus musculus (taxid: 10090)

>sp|O43818|U3IP2_HUMAN U3 small nucleolar RNA-interacting protein 2 OS=Homo sapiens GN=RRP9 PE=1 SV=1

 Score =  309 bits (791), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 171/440 (38%), Positives = 258/440 (58%), Gaps = 49/440 (11%)

Query: 73  TADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQLEES 132
           TA EK+ R+A  YLE++R+       +EE+  E R   E +      VA  L+++ LE+ 
Sbjct: 74  TAQEKKLRLAKLYLEQLRQ-------QEEEKAEARAFEEDQ------VAGRLKEDVLEQR 120

Query: 133 GRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK 192
           GR+++++A  +Q P + D  RVL  H+ S+T + ++ DDS  FSA+KD SI+ W V SG+
Sbjct: 121 GRLQKLVAKEIQAPASAD-IRVLRGHQLSITCLVVTPDDSAIFSAAKDCSIIKWSVESGR 179

Query: 193 GVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ 252
            +  +            K  +G+    S H+L +A+SSDG+YLASG   + I +W+ +  
Sbjct: 180 KLHVI--------PRAKKGAEGKPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSC 231

Query: 253 EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDC 312
           +H+  F GHR  VS L FR+GT +L+S S DR+VK+WN  + +Y+ TLFGHQ  V  +D 
Sbjct: 232 QHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDA 291

Query: 313 LRKERVLTV-GRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWS 371
           L +E  +T  GRD ++++WK+PEES+LVF     S++C   I+ +  +SG+DDGS+ LW 
Sbjct: 292 LSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALWG 351

Query: 372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC 431
           L +K+P+ + + AH    GL+              E G   P          W+SSV   
Sbjct: 352 LSKKRPLALQREAH----GLRG-------------EPGLEQP---------FWISSVAAL 385

Query: 432 GGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPR 491
             +DL A+G+ +  VRLW      + +  L ++PLVGF+NSL F+ SG FL+AGVGQE R
Sbjct: 386 LNTDLVATGSHSSCVRLWQCGEGFRQLDLLCDIPLVGFINSLKFSSSGDFLVAGVGQEHR 445

Query: 492 LGRWGHLPAARNGVLVHPIK 511
           LGRW  +  ARN V + P++
Sbjct: 446 LGRWWRIKEARNSVCIIPLR 465

Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA.

Homo sapiens (taxid: 9606)

>sp|Q9P7C0|YKU5_SCHPO Uncharacterized WD repeat-containing protein C2E1P5.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2E1P5.05 PE=4 SV=1

 Score =  211 bits (538), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 168/545 (30%), Positives = 264/545 (48%), Gaps = 91/545 (16%)

Query: 24  DPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSGPEE-------SEGE--------- 67
           DPFF     ++RK         ++  E  + ++E++GP         SE E         
Sbjct: 3   DPFFTRPEHRKRKARS-----ATSKREKENQKLERNGPANEDLASISSESEFNGFEDEID 57

Query: 68  ---EEEEETADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKIL 124
              E+  ETA EKR R+A  YL++++       E  EDG        KE +R+ L+A  L
Sbjct: 58  EENEDTYETAAEKRLRLAREYLDEVK------NELVEDGG----FDAKEVDRE-LLASRL 106

Query: 125 QQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSIL 184
           +++ LE+ G++     S++      +  ++  +H + +  V   E+    +SA K G I 
Sbjct: 107 KEDVLEKKGQMYLDYTSKINPDVKIETAQLRGRHMRPLVGVVAYENFV--YSADKSGLIQ 164

Query: 185 HW--------------DVSSGKGVK-YLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229
            W              D   GK +K +  P +      G  D         K I  LA+S
Sbjct: 165 KWEALQEKDTENRENDDHEIGKAIKLHFRPIKFSRSRRGEND-------HVKEITCLAIS 217

Query: 230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIW 289
           +DGR++ +GGLD  I + D+   E    +  HR  V  L  R+GT+E+FS S DR++K+W
Sbjct: 218 NDGRWIVTGGLDHRIVIRDSVTLEPQHCWKHHRDAVMGLAMRRGTNEMFSCSADRSIKVW 277

Query: 290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTV-GRDRSMQLWKVPEESRLVFRAPASSL- 347
           + +  +YI TLFGHQ  +  +D L +ER ++V GRDR+ +LWK+ EES+LVFR+  +S+ 
Sbjct: 278 SLDQMSYIETLFGHQDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQLVFRSGGTSMK 337

Query: 348 ----------ECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQD 397
                     +C   I  D F++GSD+G I LWS+ RKKP++     +PL  GL     D
Sbjct: 338 ATAGYMEGSVDCVAMIDEDHFVTGSDNGVIALWSVQRKKPLF----TYPLAHGL-----D 388

Query: 398 EGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKD 457
                  HS   + +P +        W++S+     S+L ASG+ +G++RLW I    + 
Sbjct: 389 PILAPGRHSAETSPDPVTIPPQP--RWITSLAAIPYSNLFASGSWDGNIRLWKIAEGLRS 446

Query: 458 IQPL---YNLPLVGFVNSLAFAKSGQ------FLIAGVGQEPRLGRWGHLPAARNGVLVH 508
            +PL     L + G +NSL+ +  G+       + A  G+E R+GRW  L    N   V 
Sbjct: 447 FEPLTIATPLSVYGCINSLSLSLQGKGKQSEVRVFAACGRETRVGRWKTLRGIPNSGFVF 506

Query: 509 PIKLS 513
            I L+
Sbjct: 507 NIPLT 511

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q06506|RRP9_YEAST Ribosomal RNA-processing protein 9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP9 PE=1 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 224/509 (44%), Gaps = 85/509 (16%)

Query: 76  EKRKRVATAYLEKIREIA-------RREKEEEEDGDEGREVGEKE----GERDS-LVAKI 123
           +KR+R+A  YLE ++  A       R  +E++ +  + R + E      G+ D  ++A  
Sbjct: 61  DKRRRLAKQYLENLKSEANDILTDNRNAEEKDLNNLKERTIDEYNNFDAGDLDKDIIASR 120

Query: 124 LQQEQLEESGRVRRVIASRVQKPEATDEFR-------VLLKHRQSVTAVALSEDDSKG-- 174
           L+++  E+ GRV R    ++   EA   F          +   Q V      E+ S G  
Sbjct: 121 LKEDVAEQQGRVFRYFGDKLLISEAKQSFTRVGENNLTCISCFQPVLNKYTFEESSNGDK 180

Query: 175 -------FSASKDGSILHWDVSS----GKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI 223
                  ++ SKD  +  +D++      K +KY     + + +    + +         I
Sbjct: 181 NKGRLFAYTVSKDLQLTKYDITDFSKRPKKLKYAKGGAKYIPT-SKHEYENTTEGHYDEI 239

Query: 224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG--HRGPVSCLTFRQGTSELFSGS 281
           L +A S DG+Y+ +GG DR + +W T     ++  P    RG V  L FR+ + +L++  
Sbjct: 240 LTVAASPDGKYVVTGGRDRKLIVWSTESLSPVKVIPTKDRRGEVLSLAFRKNSDQLYASC 299

Query: 282 FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVF 340
            D  ++ ++    + +  L+GH   V  I  L  ER +TVG RDR+  LWK+P+E+RL F
Sbjct: 300 ADFKIRTYSINQFSQLEILYGHHDIVEDISALAMERCVTVGARDRTAMLWKIPDETRLTF 359

Query: 341 R--------------------------------APA----SSLECCCFISNDEFLSGSDD 364
           R                                AP      S++    + +  F++GSD+
Sbjct: 360 RGGDEPQKLLRRWMKENAKEGEDGEVKYPDESEAPLFFCEGSIDVVSMVDDFHFITGSDN 419

Query: 365 GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW 424
           G+I LWSL +KKP++  + AH +L      E     IS    E                W
Sbjct: 420 GNICLWSLAKKKPIFTERIAHGILP-----EPSFNDISGETDEELRKRQLQGKKLLQPFW 474

Query: 425 VSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFAKSGQF-- 481
           ++S+     S++  SG+ +GS+++W I    +  + L  L    G V  +   +SG+   
Sbjct: 475 ITSLYAIPYSNVFISGSWSGSLKVWKISDNLRSFELLGELSGAKGVVTKIQVVESGKHGK 534

Query: 482 ----LIAGVGQEPRLGRW-GHLPAARNGV 505
               ++A + +E RLGRW  ++  ARNG+
Sbjct: 535 EKFRILASIAKEHRLGRWIANVSGARNGI 563

Involved in nucleolar processing of pre-18S ribosomal RNA. Required for efficient pre-rRNA cleavage at sites A0, A1 and A2, and biosynthesis of 18S rRNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 99.4 bits (246), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 160/362 (44%), Gaps = 37/362 (10%)

Query: 143  VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSIL-HWDVSSGKGVKYLWPSE 201
            V   EA   + V  K   SV  VA S D  K F+    G I+  W+ ++GK         
Sbjct: 848  VNFTEANLAYSVFTKILGSVLTVAFSPD-GKLFATGDSGGIVRFWEAATGK--------- 897

Query: 202  EVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGH 261
            E+L   G           +  + ++  S DG+ LASG  D+ + LWD    + ++ F GH
Sbjct: 898  ELLTCKG----------HNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGH 947

Query: 262  RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTV 321
               V  + F   +  L SGS D+TV++W+      +    GH   V ++       +L  
Sbjct: 948  TSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLAT 1007

Query: 322  GR-DRSMQLWKV-PEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSIELWSLLRKKPV 378
            G  D++++LW +   +   +F+   S +    F S+   L SGSDD ++ LW +     +
Sbjct: 1008 GSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCL 1067

Query: 379  YIVKNAHPLLDGLKNFEQDEGKISNGHSEN----GNLNPGS--YHSSSAYSWVSSVTVCG 432
            Y ++     +  +  F  D   +++G  +      +++ G+  Y      SWV  +    
Sbjct: 1068 YTLQGHTSCVRSVV-FSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSP 1126

Query: 433  GSDLAASGAGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFAKSGQFLIAGVG-QEP 490
                 A+G+ +  VRLW I S+    + LY L     +VN++AF+  G  L +G G Q  
Sbjct: 1127 NGVTLANGSSDQIVRLWDISSK----KCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTV 1182

Query: 491  RL 492
            RL
Sbjct: 1183 RL 1184

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 96.7 bits (239), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 140/311 (45%), Gaps = 29/311 (9%)

Query: 152  FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
             + L  H   V  VA S D +   S++ D +I  WDVS GK ++        LKSH    
Sbjct: 761  LQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLR-------TLKSH---- 809

Query: 212  PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
                    +  + ++A S+DG+ LASG  DR I +W+    E ++ + GH   V  + + 
Sbjct: 810  --------TGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYS 861

Query: 272  QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLW 330
              +  L SGS DRT+K+W+ +    I TL GH +EV ++      + L  V  D+S++LW
Sbjct: 862  PDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLW 921

Query: 331  KVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLL 388
                   L      +        S D     SGS+D +++LW     K +  ++     +
Sbjct: 922  NCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFI 981

Query: 389  DGLKNFEQDEGKISNGHSENG----NLNPGSYHSS--SAYSWVSSVTVCGGSDLAASGAG 442
             G+  F  D   +++  +++     N++ G           WV +V       + A+G+ 
Sbjct: 982  YGIA-FSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSA 1040

Query: 443  NGSVRLWAIES 453
            + +V+LW I +
Sbjct: 1041 DCTVKLWNIST 1051

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q39836|GBLP_SOYBN Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 143/342 (41%), Gaps = 47/342 (13%)

Query: 118 SLVAKILQQEQLEESGRVRRVIASRVQKPEATDEF--RVLLKHRQSVTAVALSEDDSKGF 175
           ++   I   + +  + R R +I   + K + T     R L  H   V  V LS D     
Sbjct: 20  AIATPIDNSDMIVTASRDRSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFAL 79

Query: 176 SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235
           S S DG +  WD+++G   +                   R    +K +L++A S D R +
Sbjct: 80  SGSWDGELRLWDLAAGTSAR-------------------RFVGHTKDVLSVAFSIDNRQI 120

Query: 236 ASGGLDRHIHLWDT--RIQEHIQAFPGHRGPVSCLTFRQGTSE--LFSGSFDRTVKIWNA 291
            S   DR I LW+T    +  IQ    H   VSC+ F   T +  + S S+DRTVK+WN 
Sbjct: 121 VSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNL 180

Query: 292 EDRAYISTLFGHQSEVLTIDCLRKERVLTV--GRDRSMQLWKVPEESRLVFRAPASSLEC 349
            +    +TL GH   V T+  +  +  L    G+D  + LW + E  RL      S +  
Sbjct: 181 TNCKLRNTLAGHNGYVNTV-AVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHA 239

Query: 350 CCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENG 409
            CF  +  +L  + + SI++W L  K  V             ++ + D    ++  S  G
Sbjct: 240 LCFSPSRYWLCAATEQSIKIWDLESKSIV-------------EDLKVDLKTEADATSGGG 286

Query: 410 NLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451
           N N       ++ +W +      GS L  SG  +G  R+WAI
Sbjct: 287 NANKKKVIYCTSLNWSAD-----GSTL-FSGYTDGVARVWAI 322

Glycine max (taxid: 3847)

>sp|Q9LV28|GPLPC_ARATH Guanine nucleotide-binding protein subunit beta-like protein C OS=Arabidopsis thaliana GN=RACK1C PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 133/305 (43%), Gaps = 44/305 (14%)

Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           R L  H   V  V LS D     S S DG +  WD+++G+  +                 
Sbjct: 57  RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGETTR----------------- 99

Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT--RIQEHIQAFPGHRGPVSCLTF 270
             R    +K +L++A S+D R + S   DR I LW+T    +  I    GH+  VSC+ F
Sbjct: 100 --RFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEGDGHKEWVSCVRF 157

Query: 271 RQGT--SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTV--GRDRS 326
              T    + S S+D+TVK+WN ++    ++L GH   + T+  +  +  L    G+D  
Sbjct: 158 SPNTLVPTIVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTV-AVSPDGSLCASGGKDGV 216

Query: 327 MQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHP 386
           + LW + E  +L      S +   CF  N  +L  + + SI +W L  K  V  +K    
Sbjct: 217 ILLWDLAEGKKLYSLEAGSIIHSLCFSPNRYWLCAATENSIRIWDLESKSVVEDLK---- 272

Query: 387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV 446
            +D     E++EG +       GN     Y +S  +S         GS L  SG  +G V
Sbjct: 273 -VDLKSEAEKNEGGVG-----TGNQKKVIYCTSLNWS-------ADGSTL-FSGYTDGVV 318

Query: 447 RLWAI 451
           R+W I
Sbjct: 319 RVWGI 323

Minor component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C4Z6|GPLPB_ARATH Guanine nucleotide-binding protein subunit beta-like protein B OS=Arabidopsis thaliana GN=RACK1B PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 143/335 (42%), Gaps = 46/335 (13%)

Query: 125 QQEQLEESGRVRRVIASRVQKPEATDEF--RVLLKHRQSVTAVALSEDDSKGFSASKDGS 182
             + +  S R + +I  ++ K + +     R +  H   V  V LS D     S S DG 
Sbjct: 27  NSDVIVTSSRDKSIILWKLTKEDKSYGVAQRRMTGHSHFVQDVVLSSDGQFALSGSWDGE 86

Query: 183 ILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDR 242
           +  WD+++G+  +                   R    +K +L++A S+D R + S   DR
Sbjct: 87  LRLWDLATGESTR-------------------RFVGHTKDVLSVAFSTDNRQIVSASRDR 127

Query: 243 HIHLWDT--RIQEHIQAFPGHRGPVSCLTFRQGT--SELFSGSFDRTVKIWNAEDRAYIS 298
            I LW+T    +  I    GH+  VSC+ F   T    + S S+D+TVK+WN ++    +
Sbjct: 128 TIKLWNTLGECKYTISEADGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRN 187

Query: 299 TLFGHQSEVLTIDCLRKERVLTV--GRDRSMQLWKVPEESRLVFRAPASSLECCCFISND 356
           TL GH   + T+  +  +  L    G+D  + LW + E  +L      S +   CF  N 
Sbjct: 188 TLAGHSGYLNTV-AVSPDGSLCASGGKDGVILLWDLAEGKKLYSLEAGSIIHSLCFSPNR 246

Query: 357 EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSY 416
            +L  + + SI +W L  K  V          + LK   + E + ++G +  GN     Y
Sbjct: 247 YWLCAATENSIRIWDLESKSVV----------EDLKVDLKAEAEKTDGSTGIGNKTKVIY 296

Query: 417 HSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451
            +S  +S           +   SG  +G +R+W I
Sbjct: 297 CTSLNWS--------ADGNTLFSGYTDGVIRVWGI 323

Minor component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|P49026|GBLP_TOBAC Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 146/343 (42%), Gaps = 47/343 (13%)

Query: 118 SLVAKILQQEQLEESGRVRRVIASRVQK--PEATDEFRVLLKHRQSVTAVALSEDDSKGF 175
           ++   +   + +  S R + +I   + K  P+     R L  H   V  V LS D     
Sbjct: 21  AIATAVDNSDMIVTSSRDKSIIVWSITKDGPQYGVPRRRLTGHGHFVQDVVLSSDGMFAL 80

Query: 176 SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235
           S S DG +  WD+ +G   +                   R    +K +L++A S D R +
Sbjct: 81  SGSWDGELRLWDLQAGTTAR-------------------RFVGHTKDVLSVAFSVDNRQI 121

Query: 236 ASGGLDRHIHLWDT--RIQEHIQAFPGHRGPVSCLTFRQGTSE--LFSGSFDRTVKIWNA 291
            S   D+ I LW+T    +  IQ    H   VSC+ F     +  + SGS+DRTVKIWN 
Sbjct: 122 VSASRDKSIRLWNTLGECKYTIQDGDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNL 181

Query: 292 EDRAYISTLFGHQSEVLTIDCLRKERVLTV--GRDRSMQLWKVPEESRLVFRAPASSLEC 349
            +     TL GH   V T   +  +  L    G+D  + LW + E  +L      S +  
Sbjct: 182 TNCKLRLTLAGHTGYVNT-PAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHS 240

Query: 350 CCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENG 409
            CF  N  +L  + + SI++W L  K           ++D LK   + E ++S+  + +G
Sbjct: 241 LCFSPNRYWLCAATESSIKIWDLESKS----------IVDDLKVDLKQESEMSSEGTASG 290

Query: 410 NLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE 452
             N   Y +S ++S         GS L  SG  +G +R+W I+
Sbjct: 291 K-NKVIYCTSLSWS-------ADGSTL-FSGYTDGLIRVWGID 324

May have a role in cell division.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
225444021	519	PREDICTED: U3 small nucleolar RNA-intera	0.962	0.951	0.760	0.0
225444023	500	PREDICTED: U3 small nucleolar RNA-intera	0.927	0.952	0.736	0.0
147770745	573	hypothetical protein VITISV_042496 [Viti	0.962	0.862	0.685	0.0
449447723	494	PREDICTED: U3 small nucleolar RNA-intera	0.951	0.987	0.711	0.0
224080945	502	predicted protein [Populus trichocarpa]	0.959	0.980	0.655	1e-180
356533031	496	PREDICTED: U3 small nucleolar RNA-intera	0.945	0.977	0.663	1e-177
224093378	500	predicted protein [Populus trichocarpa]	0.957	0.982	0.641	1e-176
357448457	514	Pre-mRNA-processing factor [Medicago tru	0.974	0.972	0.618	1e-173
255557126	572	U3 small nucleolar RNA-interacting prote	0.912	0.818	0.663	1e-170
356533033	479	PREDICTED: U3 small nucleolar RNA-intera	0.912	0.977	0.651	1e-170

>gi|225444021|ref|XP_002281628.1| PREDICTED: U3 small nucleolar RNA-interacting protein 2 isoform 1 [Vitis vinifera] gi|297740813|emb|CBI30995.3| unnamed protein product [Vitis vinifera]

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/506 (76%), Positives = 429/506 (84%), Gaps = 12/506 (2%)

Query: 16  KGK-FSINQDPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSGPEESEGEEEEEE-- 72
           KGK FSI++D FF  E K+RRK   D+D  +     + +D+ E +G +    EE +EE  
Sbjct: 18  KGKRFSIDEDSFFRHESKRRRKAK-DEDAEDDIIESEEEDDEEGTGSDADGLEERQEEDE 76

Query: 73  ----TADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQ 128
               TADEKR RVA AY+EKIR I  RE+E+EE   E     E+EG+RDSLVA+ILQQEQ
Sbjct: 77  FAAETADEKRLRVAKAYVEKIRGIVSREREDEE---ESERAEEREGQRDSLVAQILQQEQ 133

Query: 129 LEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDV 188
           LEESGRVRR+IASRVQKPE  DEFRVL+KHRQSVTAVALSEDD KGFSASKDG+I+ WDV
Sbjct: 134 LEESGRVRRLIASRVQKPETVDEFRVLVKHRQSVTAVALSEDDLKGFSASKDGTIVQWDV 193

Query: 189 SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWD 248
            SGKG KY+WP+EEVLKSHGAKDPQGRA K SKH+LALAVSSDGRYLASGG DRH+HLWD
Sbjct: 194 DSGKGEKYMWPTEEVLKSHGAKDPQGRAMKHSKHVLALAVSSDGRYLASGGFDRHVHLWD 253

Query: 249 TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308
           TR +EH++AFPGHRGPVSCLTFRQGTSELFSGSFDRT+KIW+AEDRAYI++LFGHQSEVL
Sbjct: 254 TRTREHLRAFPGHRGPVSCLTFRQGTSELFSGSFDRTIKIWSAEDRAYITSLFGHQSEVL 313

Query: 309 TIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIE 368
           +IDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFI+NDEFLSGSDDGSIE
Sbjct: 314 SIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFINNDEFLSGSDDGSIE 373

Query: 369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQ-DEGKISNGHSENGNLNPGSYHSSSAYSWVSS 427
           LW +LRKKPVYIVKNAH L   L+  EQ D GKI NG+ ENGN N   Y+ S+AYSWVSS
Sbjct: 374 LWGMLRKKPVYIVKNAHALSATLRQPEQSDVGKIPNGYIENGNHNHEDYNCSTAYSWVSS 433

Query: 428 VTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVG 487
           VTVC  SDLAASGA NGSVRLWAI SETKDI+PL+NLPLVGFVNSLAF+KSGQFL+AGVG
Sbjct: 434 VTVCRSSDLAASGAANGSVRLWAIGSETKDIRPLFNLPLVGFVNSLAFSKSGQFLVAGVG 493

Query: 488 QEPRLGRWGHLPAARNGVLVHPIKLS 513
           QEPRLGRWG LPAARNGV V  +KLS
Sbjct: 494 QEPRLGRWGRLPAARNGVAVQSLKLS 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444023|ref|XP_002281634.1| PREDICTED: U3 small nucleolar RNA-interacting protein 2 isoform 2 [Vitis vinifera]

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/505 (73%), Positives = 415/505 (82%), Gaps = 29/505 (5%)

Query: 16  KGK-FSINQDPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSGPEESEGEEEEEE-- 72
           KGK FSI++D FF  E K+RRK   D+D  +     + +D+ E +G +    EE +EE  
Sbjct: 18  KGKRFSIDEDSFFRHESKRRRKAK-DEDAEDDIIESEEEDDEEGTGSDADGLEERQEEDE 76

Query: 73  ----TADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQ 128
               TADEKR RVA AY+EKIR I      E ED +E     E+EG+RDSLVA+ILQQEQ
Sbjct: 77  FAAETADEKRLRVAKAYVEKIRGIV---SREREDEEESERAEEREGQRDSLVAQILQQEQ 133

Query: 129 LEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDV 188
           LEESGRVRR+IASRVQKPE  DEFRVL+KHRQSVTAVALSEDD KGFSASKDG+I+ WDV
Sbjct: 134 LEESGRVRRLIASRVQKPETVDEFRVLVKHRQSVTAVALSEDDLKGFSASKDGTIVQWDV 193

Query: 189 SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWD 248
            SGKG KY+WP+EEVLKSHGAKDPQGRA K SKH+LALAVSSDGRYLASGG DRH+HLWD
Sbjct: 194 DSGKGEKYMWPTEEVLKSHGAKDPQGRAMKHSKHVLALAVSSDGRYLASGGFDRHVHLWD 253

Query: 249 TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308
           TR +EH++AFPGHRGPVSCLTFRQGTSELFSGSFDRT+KIW+AEDRAYI++LFGHQSEVL
Sbjct: 254 TRTREHLRAFPGHRGPVSCLTFRQGTSELFSGSFDRTIKIWSAEDRAYITSLFGHQSEVL 313

Query: 309 TIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIE 368
           +IDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFI+NDEFLSGSDDGSIE
Sbjct: 314 SIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFINNDEFLSGSDDGSIE 373

Query: 369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV 428
           LW +LRKKPVYIVKNAH L   L+  EQ+                  Y+ S+AYSWVSSV
Sbjct: 374 LWGMLRKKPVYIVKNAHALSATLRQPEQN------------------YNCSTAYSWVSSV 415

Query: 429 TVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ 488
           TVC  SDLAASGA NGSVRLWAI SETKDI+PL+NLPLVGFVNSLAF+KSGQFL+AGVGQ
Sbjct: 416 TVCRSSDLAASGAANGSVRLWAIGSETKDIRPLFNLPLVGFVNSLAFSKSGQFLVAGVGQ 475

Query: 489 EPRLGRWGHLPAARNGVLVHPIKLS 513
           EPRLGRWG LPAARNGV V  +KLS
Sbjct: 476 EPRLGRWGRLPAARNGVAVQSLKLS 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770745|emb|CAN60229.1| hypothetical protein VITISV_042496 [Vitis vinifera]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/560 (68%), Positives = 429/560 (76%), Gaps = 66/560 (11%)

Query: 16  KGK-FSINQDPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSGPEESEGEEEEEE-- 72
           KGK FSI++D FF  E K+RRK   D+D  +     + +D+ E +G +    EE +EE  
Sbjct: 18  KGKRFSIDEDSFFRHESKRRRKAK-DEDAEDDIIESEEEDDEEGTGSDADGLEERQEEDE 76

Query: 73  ----TADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQ 128
               TADEKR RVA AY+EKIR I  RE+E+EE   E     E+EG+RDSLVA+ILQQEQ
Sbjct: 77  FAAETADEKRLRVAKAYVEKIRGIVSREREDEE---ESERAEEREGQRDSLVAQILQQEQ 133

Query: 129 LEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDV 188
           LEESGRVRR+IASRVQKPE  DEFRVL+KHRQSVTAVALSEDD KGFSASKDG+I+ WDV
Sbjct: 134 LEESGRVRRLIASRVQKPETVDEFRVLVKHRQSVTAVALSEDDLKGFSASKDGTIVQWDV 193

Query: 189 SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWD 248
            SGKG KY+WP+EEVLKSHGAKDPQGRA K SKH+LALAVSSDGRYLASGG DRH+HLWD
Sbjct: 194 DSGKGEKYMWPTEEVLKSHGAKDPQGRAMKHSKHVLALAVSSDGRYLASGGFDRHVHLWD 253

Query: 249 TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308
           TR +EH++AFPGHRGPVSCLTFRQGTSELFSGSFDRT+KIW+AEDRAYI++LFGHQSEVL
Sbjct: 254 TRTREHLRAFPGHRGPVSCLTFRQGTSELFSGSFDRTIKIWSAEDRAYITSLFGHQSEVL 313

Query: 309 TIDCLRKERVLTVGRDRSMQL--------------------------------------- 329
           +IDCLRKERVLTVGRDRSMQL                                       
Sbjct: 314 SIDCLRKERVLTVGRDRSMQLWKVEEVDYWNPMITRQINDWELGEVEELLRRLQGQVIRR 373

Query: 330 -------WK--------VPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLR 374
                  W+        VPEESRLVFRAPASSLECCCFI+NDEFLSGSDDGSIELW +LR
Sbjct: 374 GVEDVMAWRLTKGGTFIVPEESRLVFRAPASSLECCCFINNDEFLSGSDDGSIELWGMLR 433

Query: 375 KKPVYIVKNAHPLLDGLKNFEQ-DEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG 433
           KKPVYIVKNAH L   L+  EQ D GKI NG+ ENGN N   Y+ S+AYSWVSSVTVC  
Sbjct: 434 KKPVYIVKNAHALSATLRQPEQSDVGKIPNGYIENGNHNHEDYNCSTAYSWVSSVTVCRS 493

Query: 434 SDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLG 493
           SDLAASGA NGSVRLWAI SETKDI+PL+NLPLVGFVNSLAF+KSGQFL+AGVGQEPRLG
Sbjct: 494 SDLAASGAANGSVRLWAIGSETKDIRPLFNLPLVGFVNSLAFSKSGQFLVAGVGQEPRLG 553

Query: 494 RWGHLPAARNGVLVHPIKLS 513
           RWG LPAARNGV V  +KLS
Sbjct: 554 RWGRLPAARNGVAVQSLKLS 573

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447723|ref|XP_004141617.1| PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Cucumis sativus]

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/513 (71%), Positives = 421/513 (82%), Gaps = 25/513 (4%)

Query: 6   TKKKGPAPRG---KGK-FSINQDPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSGP 61
           TKKK  AP     KGK F +++DPFF+ E +KRRKI   DD+IES +S+      E +G 
Sbjct: 2   TKKKTSAPPNGAKKGKNFPLSKDPFFSSESRKRRKI--VDDEIESGESD------EDNGL 53

Query: 62  EESEGEEEEEETADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVA 121
              E EE EEET DEKRKRVA  YLEKIREIA+REKE  ++ ++  +  + EGE+DSLVA
Sbjct: 54  MGVEDEEFEEETVDEKRKRVAVEYLEKIREIAKREKERGDE-EKDEDESDDEGEKDSLVA 112

Query: 122 KILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDG 181
           KILQQEQLE+SGR+RR IASRVQKP A DEF++L+KHRQSVTAVALSEDD KGFS+SKDG
Sbjct: 113 KILQQEQLEDSGRLRREIASRVQKPVARDEFQLLIKHRQSVTAVALSEDDLKGFSSSKDG 172

Query: 182 SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD 241
           +ILHWDV SGKG KY WPS+EVL+ HGAKDPQGRATK SK   +LAVSSDGRYLASGGLD
Sbjct: 173 TILHWDVESGKGEKYRWPSDEVLRLHGAKDPQGRATKHSKVTFSLAVSSDGRYLASGGLD 232

Query: 242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF 301
           RH+H+WDTR +EHIQAFPGHRGPVSCLTFRQGTSELFSGS+DRTVKIWN +DRAYI+TLF
Sbjct: 233 RHVHIWDTRTREHIQAFPGHRGPVSCLTFRQGTSELFSGSYDRTVKIWNVDDRAYINTLF 292

Query: 302 GHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSG 361
           GHQS+VLTIDCLRKER+LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSG
Sbjct: 293 GHQSDVLTIDCLRKERLLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSG 352

Query: 362 SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFE-QDEGKISNGHSENGNLNPGSYHSSS 420
           SDDGSIELW+ L+KKPV+IV+NAH       N E ++ G I NG   NG+ N  + H+ S
Sbjct: 353 SDDGSIELWTALKKKPVFIVRNAHSSSSSSTNLELKENGAIPNGCMGNGDANHNTSHNLS 412

Query: 421 AYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQ 480
           AYSW+SSV+VC  SDLAASGAGNGSVRLWA+ S+ KD++PLY+LPL            G+
Sbjct: 413 AYSWISSVSVCRNSDLAASGAGNGSVRLWALTSDKKDVRPLYDLPLF-----------GR 461

Query: 481 FLIAGVGQEPRLGRWGHLPAARNGVLVHPIKLS 513
           F++AGVGQEPRLGRWG +PAARNGV VHP+KLS
Sbjct: 462 FVVAGVGQEPRLGRWGRIPAARNGVAVHPLKLS 494

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080945|ref|XP_002306239.1| predicted protein [Populus trichocarpa] gi|222855688|gb|EEE93235.1| predicted protein [Populus trichocarpa]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 338/516 (65%), Positives = 408/516 (79%), Gaps = 24/516 (4%)

Query: 4   KNTKKKGPAP----RGKGKFSINQDPFFAGEPKKRRKIDYDDDDIESADSEDYD--DEVE 57
           KN +K+G  P    RG  KFS+N+DPFF+   K+R+K + +D + E  +  D    +   
Sbjct: 3   KNPRKRGGPPGRNERGGSKFSMNRDPFFSNN-KRRKKGEDEDIESEEEEELDGGMLNGGG 61

Query: 58  KSGPEESEGEEEEEETADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERD 117
           +SG +E + E   EETA+EKR+R+A A +E +R  AR ++ E E+ +EG    EKEGERD
Sbjct: 62  ESGEDEEDEELIPEETAEEKRQRIAKAVVENLR--AREKELEGEEDEEGDREFEKEGERD 119

Query: 118 SLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSA 177
           S VAK L Q+QLEESGR+RR IASRVQKPE+ D F VL+KHRQSVTAV LS+DDSKGFSA
Sbjct: 120 SSVAKKLMQQQLEESGRLRRAIASRVQKPESVDGFEVLVKHRQSVTAVCLSDDDSKGFSA 179

Query: 178 SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237
           SKDG+ILHWDV SGK  KY WP++E+L+SHGAK+P+GRATK S+++LALAVS+DGRYLAS
Sbjct: 180 SKDGTILHWDVDSGKAEKYQWPNDEILRSHGAKNPEGRATKHSRNVLALAVSTDGRYLAS 239

Query: 238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI 297
           GGLDRH+HLWDTR +EHIQAFPGH+GPVSCLTFR+G+SELFSGS+DR++KIWN EDRAY+
Sbjct: 240 GGLDRHVHLWDTRTREHIQAFPGHKGPVSCLTFRKGSSELFSGSYDRSIKIWNVEDRAYM 299

Query: 298 STLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE 357
           +TLFGHQSE+LTIDCL +ERVL VGRDRSMQL+KV +ESRL+FR+  SSLECCCFI N E
Sbjct: 300 NTLFGHQSELLTIDCLWQERVLAVGRDRSMQLFKVHDESRLIFRSSTSSLECCCFIDNSE 359

Query: 358 FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFE-QDEGKISNGHSENGNLNPGSY 416
           F+SGSDDG+IELWS+ +KKPVYIVKNAH     + N E +D G+  NGH           
Sbjct: 360 FVSGSDDGNIELWSVQKKKPVYIVKNAHTSSTDVNNGELKDNGRNYNGH----------- 408

Query: 417 HSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFA 476
               A SWVSSV VC GSDLAASGAGNGSVRLWA+E   K I+PLY+LPL GFVNSLAFA
Sbjct: 409 ---VASSWVSSVGVCRGSDLAASGAGNGSVRLWAVEGAGKGIRPLYDLPLTGFVNSLAFA 465

Query: 477 KSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIKL 512
           KSG+FL+AGVGQEPRLGRWGH  AARNGV +  +KL
Sbjct: 466 KSGKFLLAGVGQEPRLGRWGHNSAARNGVAIQQLKL 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533031|ref|XP_003535072.1| PREDICTED: U3 small nucleolar RNA-interacting protein 2-like isoform 1 [Glycine max]

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 328/494 (66%), Positives = 400/494 (80%), Gaps = 9/494 (1%)

Query: 23  QDPFFAGEPKKRRKID---YDDDDIESADSEDYDDEVEKSGPEESEGEEEEEETADEKRK 79
            DPFF  + +KR+K +    +D++ ++    D+D++   +G      E+EEEET  E RK
Sbjct: 8   HDPFFTNDSRKRQKQNKKLDEDEEEDAEIESDFDEDGFFAGGGGGGEEQEEEETGAEVRK 67

Query: 80  RVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQLEESGRVRRVI 139
           R+A   L+++R+ A++ +EEE+D     E  ++EG RDSLVA+ L +EQ EESGRVRR +
Sbjct: 68  RLAQDLLQRVRKSAQKGEEEEDD----EEEEDEEGARDSLVAQKLLKEQNEESGRVRRSL 123

Query: 140 ASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWP 199
           ASRV K    + FRVL KHR SVTAVALSEDDSKGFSASKDG+I+ WDV+SG+  +Y WP
Sbjct: 124 ASRV-KVSGDEGFRVLAKHRHSVTAVALSEDDSKGFSASKDGTIMQWDVNSGQCERYKWP 182

Query: 200 SEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP 259
           S+ VLKSHG KDPQG AT+QSK +LALA SSDGRYLA+GGLDRHIH+WDTR +EH+Q+FP
Sbjct: 183 SDSVLKSHGLKDPQGSATRQSKQVLALAASSDGRYLATGGLDRHIHIWDTRTREHLQSFP 242

Query: 260 GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL 319
           GHRGPVSCLTFRQGTSELFSGSFDRT+KIWN EDR Y+STLFGHQSEVL+IDCLRKERVL
Sbjct: 243 GHRGPVSCLTFRQGTSELFSGSFDRTIKIWNVEDRTYMSTLFGHQSEVLSIDCLRKERVL 302

Query: 320 TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVY 379
           T GRDRSMQL+KV EESRLVFRAPASSLECCCF+ NDE  SGSDDGSIELW+++RKKP+Y
Sbjct: 303 TAGRDRSMQLFKVHEESRLVFRAPASSLECCCFVGNDELFSGSDDGSIELWTVMRKKPIY 362

Query: 380 IVKNAHPL-LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA 438
           I++NAH L +D +K+ ++D  K+ NG+ ENG  +P  +H  S +SWVS+V+VC  SDLAA
Sbjct: 363 ILRNAHALPVDSMKSDQKDSEKLPNGNLENGYNHPKDHHCLSVFSWVSAVSVCRNSDLAA 422

Query: 439 SGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL 498
           SGAGNGSVRLW IES+TKDI+ L N+PL GFVNSLAFAKSG+FL+AGVGQEPRLGRWG  
Sbjct: 423 SGAGNGSVRLWEIESDTKDIKSLCNVPLAGFVNSLAFAKSGEFLVAGVGQEPRLGRWGRN 482

Query: 499 PAARNGVLVHPIKL 512
           P ARNGV + P+KL
Sbjct: 483 PEARNGVSILPLKL 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093378|ref|XP_002309903.1| predicted protein [Populus trichocarpa] gi|222852806|gb|EEE90353.1| predicted protein [Populus trichocarpa]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 334/521 (64%), Positives = 398/521 (76%), Gaps = 30/521 (5%)

Query: 1   MKYKNTKKKGPAP----RGKGKFSINQDPFFAGEPKKRRKIDYDDDDIESADSED----Y 52
           MK KN +K G  P    RG  KFS+N+DPFF+    KRRK D D+      +  D     
Sbjct: 1   MKNKNPRKMGGPPGKNKRGSSKFSMNRDPFFSSS--KRRKKDEDEVIESEEEELDGGMLN 58

Query: 53  DDEVEKSGPEESEGEEEEEETADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEK 112
                    EE E E E EETA+EKR+R+A   +E +R+  +  ++EE++  E   V EK
Sbjct: 59  GGGESGEEEEEEEEELEPEETAEEKRQRIAKELVENLRKREKELEDEEDEEGE--RVFEK 116

Query: 113 EGERDSLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDS 172
           EGERDS VAK L Q+QLE+SGR+RR IASRVQKPE+ D F +L+KHRQSVTA+ LS+DDS
Sbjct: 117 EGERDSFVAKKLMQQQLEDSGRLRRAIASRVQKPESVDGFEILVKHRQSVTAICLSDDDS 176

Query: 173 KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG 232
           KGFSASKDG+ILHWDV SGK  +Y WP+EE+L+SHG+K+P+GRATK S+++LAL+VS+DG
Sbjct: 177 KGFSASKDGTILHWDVDSGKAERYQWPNEEILRSHGSKNPEGRATKHSRNVLALSVSTDG 236

Query: 233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE 292
           RYLASGGLDRH+HLWDTR +EHIQAFPGH+GPVSCLTFRQG+SELFSGSFDR++KIWN E
Sbjct: 237 RYLASGGLDRHVHLWDTRTREHIQAFPGHKGPVSCLTFRQGSSELFSGSFDRSIKIWNVE 296

Query: 293 DRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCF 352
           DRAY++TLFGHQSEVL IDCL +ERVL VGRDRSMQL+KV +ESRL+FR+  SSLECCCF
Sbjct: 297 DRAYMNTLFGHQSEVLAIDCLWQERVLAVGRDRSMQLFKVHDESRLIFRSSTSSLECCCF 356

Query: 353 ISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFE-QDEGKISNGHSENGNL 411
           I N EFLSGSDDG+I LW + +KKPVYIVKNAH L   + N E +D G+  N        
Sbjct: 357 IDNSEFLSGSDDGNIALWGVQKKKPVYIVKNAHALSTDVNNGELKDRGRNYN-------- 408

Query: 412 NPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVN 471
                    A SWVSSV VC GSDLAASGAGNGSV LWAIE   K I+PLY+LPL+GFVN
Sbjct: 409 ---------ASSWVSSVGVCRGSDLAASGAGNGSVHLWAIEGAGKGIRPLYDLPLIGFVN 459

Query: 472 SLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIKL 512
           SLAFAKSG+FL+AGVGQEPRLGRWGH  AARNGV +  +KL
Sbjct: 460 SLAFAKSGKFLVAGVGQEPRLGRWGHNSAARNGVAIQRLKL 500

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448457|ref|XP_003594504.1| Pre-mRNA-processing factor [Medicago truncatula] gi|355483552|gb|AES64755.1| Pre-mRNA-processing factor [Medicago truncatula]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 326/527 (61%), Positives = 399/527 (75%), Gaps = 27/527 (5%)

Query: 1   MKYKNTKKKGPAPRGKGKFSINQDPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSG 60
           M  KN +KK            ++DPFF   P KRR++  D+D     +S+   DE     
Sbjct: 1   MPAKNNRKKN-----------SRDPFFDDGPTKRRRVAADEDQDAEIESDSDFDEDGFVP 49

Query: 61  PEESEGEEEEEETADEKRKRVATAYLEKIREIARREKEEEEDGDEGREVGEKEGE---RD 117
            +    +E EEET  E RKR+A  YL K ++ ARREKE+ ++  +G +  + E E   RD
Sbjct: 50  SKGEGEQESEEETTAEARKRLAEEYLRKFKDSARREKEQRDEDGDGSDDDDDEDEDGVRD 109

Query: 118 SLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSA 177
           SL  K+++++Q EESGR+R+ IASRV K +    F  L+KH+Q VTAVALSEDDSKGFSA
Sbjct: 110 SLSTKMIKEQQ-EESGRIRKAIASRV-KLDGDGGFENLVKHKQCVTAVALSEDDSKGFSA 167

Query: 178 SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237
           SKDGSI+ WDV SGK  +Y WP + VLKSHG KDPQG A KQS+ IL LA SSDGRYLA+
Sbjct: 168 SKDGSIVQWDVESGKCERYKWPIDSVLKSHGLKDPQGSAAKQSRQILTLAASSDGRYLAT 227

Query: 238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI 297
           GGLDRHIH+WDTR +EH+QAFPGHRGPVS L FR+G++ELFSGSFDRTVKIWN EDR Y+
Sbjct: 228 GGLDRHIHIWDTRTREHLQAFPGHRGPVSSLAFREGSTELFSGSFDRTVKIWNVEDRTYM 287

Query: 298 STLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE 357
           +TLFGHQSEVL+IDCLRKERVL+ GRDRSMQL+KV EESRLVFRAPASSLECCCF++N+E
Sbjct: 288 NTLFGHQSEVLSIDCLRKERVLSAGRDRSMQLFKVHEESRLVFRAPASSLECCCFVNNEE 347

Query: 358 FLSGSDDGSIELWSLLRKKPVYIVKNAHPLL-DGLKNFEQDEGKISNGHSENGNLNPGSY 416
           FLSGSDDGSIELW  +RKKP++I++NAH LL D  K+ + D  ++ NG+ ENG+ +P ++
Sbjct: 348 FLSGSDDGSIELWGAVRKKPIHILRNAHALLTDSKKSDQNDSERLPNGNLENGHHHPENH 407

Query: 417 HSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFA 476
           H SS +SWVS+VTVC  SDLAASGAGNG VRLW IE+ETKDI+PL+N+PLVGFVNSLAFA
Sbjct: 408 HCSSVHSWVSAVTVCRNSDLAASGAGNGFVRLWTIENETKDIKPLHNVPLVGFVNSLAFA 467

Query: 477 KSGQFLIAGVGQ----------EPRLGRWGHLPAARNGVLVHPIKLS 513
           KS +FL+AGVGQ          EPRLGRWG +  ARNGV + P+KLS
Sbjct: 468 KSAKFLVAGVGQVLKLLNSACIEPRLGRWGRIREARNGVSILPLKLS 514

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557126|ref|XP_002519595.1| U3 small nucleolar RNA-interacting protein, putative [Ricinus communis] gi|223541253|gb|EEF42806.1| U3 small nucleolar RNA-interacting protein, putative [Ricinus communis]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 329/496 (66%), Positives = 380/496 (76%), Gaps = 28/496 (5%)

Query: 1   MKYKNTKKKGPAPRGKGKFSINQDPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSG 60
           MKY N  K       K K S+ QDPFF  E KKRRK +Y DD IES   E  ++    + 
Sbjct: 1   MKYSNKSKNS-----KRKGSVKQDPFFNTESKKRRKNEYRDDYIESGGEESDEENNNNNN 55

Query: 61  PEESEGEEEEEE------TADEKRKRVATAYLEKIREIARREKEEEEDG--DEGREVGEK 112
                   +E+E      TA EKR+R+A AYLEK REI RRE+EE E+   D GR   EK
Sbjct: 56  NNGFSNSGDEKEREDEKETAQEKRQRLAKAYLEKRREILRREEEEAEEEGEDNGR--CEK 113

Query: 113 EGERDSLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDS 172
           EGERDSLV  +L +EQLE+SGR+RR IASRV+KPE    F VL+KHR SVTAV LS+DDS
Sbjct: 114 EGERDSLVVNMLLKEQLEDSGRLRRAIASRVEKPETVGGFEVLVKHRHSVTAVCLSDDDS 173

Query: 173 KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG 232
           KGFSASKDG+I  WDV +GKG KY WP++E L+ HG K+P GRATK SK +LALAVS+DG
Sbjct: 174 KGFSASKDGTIRQWDVDTGKGEKYQWPNDETLRLHGVKNPDGRATKHSKQVLALAVSTDG 233

Query: 233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE 292
           RYLA+GGLDRHIHLWDTR ++HIQAFPGHRGPVSCLTFRQGTSELFSGSFDR++KIW+ E
Sbjct: 234 RYLATGGLDRHIHLWDTRAKQHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRSIKIWSVE 293

Query: 293 DRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCF 352
           DRAY++TLFGHQSEVLT+DCLRKERVL  GRDR+MQL+KVPEESRL+FR+ ASSLECCCF
Sbjct: 294 DRAYVNTLFGHQSEVLTVDCLRKERVLATGRDRTMQLFKVPEESRLIFRSSASSLECCCF 353

Query: 353 ISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLN 412
           I NDEFLSGSDDG+IELW+  +KKPVYIVKNAH LL   KN EQ          +N +L+
Sbjct: 354 IDNDEFLSGSDDGNIELWTAQKKKPVYIVKNAHALLIDPKNPEQ---------KDNASLS 404

Query: 413 PGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNS 472
            G      A SWVSSV VC GSDLAASGAGNGSVRLWAI+   K I+PLY+LPLVGF+NS
Sbjct: 405 SGPI----ACSWVSSVAVCTGSDLAASGAGNGSVRLWAIDGAPKGIRPLYDLPLVGFINS 460

Query: 473 LAFAKSGQFLIAGVGQ 488
           LAF+KSG+FL AGVGQ
Sbjct: 461 LAFSKSGRFLAAGVGQ 476

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533033|ref|XP_003535073.1| PREDICTED: U3 small nucleolar RNA-interacting protein 2-like isoform 2 [Glycine max]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 322/494 (65%), Positives = 389/494 (78%), Gaps = 26/494 (5%)

Query: 23  QDPFFAGEPKKRRKID---YDDDDIESADSEDYDDEVEKSGPEESEGEEEEEETADEKRK 79
            DPFF  + +KR+K +    +D++ ++    D+D++   +G      E+EEEET  E RK
Sbjct: 8   HDPFFTNDSRKRQKQNKKLDEDEEEDAEIESDFDEDGFFAGGGGGGEEQEEEETGAEVRK 67

Query: 80  RVATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQLEESGRVRRVI 139
           R+A   L+++R+ A++ +EEE+D     E  ++EG RDSLVA+ L +EQ EESGRVRR +
Sbjct: 68  RLAQDLLQRVRKSAQKGEEEEDD----EEEEDEEGARDSLVAQKLLKEQNEESGRVRRSL 123

Query: 140 ASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWP 199
           ASRV K    + FRVL KHR SVTAVALSEDDSKGFSASKDG+I+ WDV+SG+  +Y WP
Sbjct: 124 ASRV-KVSGDEGFRVLAKHRHSVTAVALSEDDSKGFSASKDGTIMQWDVNSGQCERYKWP 182

Query: 200 SEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP 259
           S+ VLKSHG KDPQG AT+QSK +LALA SSDGRYLA+GGLDRHIH+WDTR +EH+Q+FP
Sbjct: 183 SDSVLKSHGLKDPQGSATRQSKQVLALAASSDGRYLATGGLDRHIHIWDTRTREHLQSFP 242

Query: 260 GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL 319
           GHRGPVSCLTFRQGTSELFSGSFDRT+KIWN EDR Y+STLFGHQSEVL+IDCLRKERVL
Sbjct: 243 GHRGPVSCLTFRQGTSELFSGSFDRTIKIWNVEDRTYMSTLFGHQSEVLSIDCLRKERVL 302

Query: 320 TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVY 379
           T GRDRSMQL+KV EESRLVFRAPASSLECCCF+ NDE  SGSDDGSIELW+++RKKP+Y
Sbjct: 303 TAGRDRSMQLFKVHEESRLVFRAPASSLECCCFVGNDELFSGSDDGSIELWTVMRKKPIY 362

Query: 380 IVKNAHPL-LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA 438
           I++NAH L +D                 +NG  +P  +H  S +SWVS+V+VC  SDLAA
Sbjct: 363 ILRNAHALPVD-----------------KNGYNHPKDHHCLSVFSWVSAVSVCRNSDLAA 405

Query: 439 SGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL 498
           SGAGNGSVRLW IES+TKDI+ L N+PL GFVNSLAFAKSG+FL+AGVGQEPRLGRWG  
Sbjct: 406 SGAGNGSVRLWEIESDTKDIKSLCNVPLAGFVNSLAFAKSGEFLVAGVGQEPRLGRWGRN 465

Query: 499 PAARNGVLVHPIKL 512
           P ARNGV + P+KL
Sbjct: 466 PEARNGVSILPLKL 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
TAIR|locus:2127408	479	EMB2271 "AT4G21130" [Arabidops	0.528	0.565	0.667	3.5e-135
TAIR|locus:2115984	504	YAO "AT4G05410" [Arabidopsis t	0.746	0.759	0.621	4.6e-135
MGI|MGI:2384313	475	Rrp9 "RRP9, small subunit (SSU	0.520	0.562	0.410	1.3e-78
RGD|1307881	478	Rrp9 "ribosomal RNA processing	0.520	0.558	0.413	2.2e-76
UNIPROTKB|I3LQS7	478	RRP9 "Uncharacterized protein"	0.520	0.558	0.399	1.4e-75
UNIPROTKB|F1NIY8	364	F1NIY8 "Uncharacterized protei	0.524	0.739	0.412	3.3e-61
UNIPROTKB|O43818	475	RRP9 "U3 small nucleolar RNA-i	0.520	0.562	0.410	1.4e-55
UNIPROTKB|F1MRM3	475	RRP9 "Uncharacterized protein"	0.520	0.562	0.395	2.6e-55
UNIPROTKB|G4MZP1	609	MGG_07030 "Uncharacterized pro	0.421	0.354	0.356	8.2e-49
POMBASE|SPAC2E1P5.05	524	SPAC2E1P5.05 "U3 snoRNP-associ	0.744	0.729	0.316	3.3e-47

TAIR|locus:2127408 EMB2271 "AT4G21130" [Arabidopsis thaliana (taxid:3702)]

 Score = 972 (347.2 bits), Expect = 3.5e-135, Sum P(3) = 3.5e-135
 Identities = 181/271 (66%), Positives = 226/271 (83%)

Query:   118 SLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSA 177
             SLVAK L QEQLE+SGRVRR  A RVQ  +++D+FRV++KH+ SVT VALS+DDS+GFS 
Sbjct:   104 SLVAKTLMQEQLEKSGRVRRANALRVQDLQSSDKFRVIVKHQHSVTGVALSDDDSRGFSV 163

Query:   178 SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237
             SKDG+ILHWDVSSGK  +Y WPS+EVLKSHG K  +   T+ +K  LALAVSSDGRYLA+
Sbjct:   164 SKDGTILHWDVSSGKSDEYKWPSDEVLKSHGLKFQESWYTRHNKQSLALAVSSDGRYLAT 223

Query:   238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI 297
             GG+D H+HLWD R +EH+QAF GH G VS L FR+GT+ELFSGS+D T+ IWNAE R YI
Sbjct:   224 GGVDCHVHLWDIRTREHVQAFTGHCGIVSSLCFREGTAELFSGSYDGTLSIWNAEHRTYI 283

Query:   298 STLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE 357
              + FGHQSE+L+ID L +ERVL+VGRDR+MQL+KVPE +RL++RA  S+ ECCCF+++DE
Sbjct:   284 ESCFGHQSELLSIDALGRERVLSVGRDRTMQLYKVPESTRLIYRASESNFECCCFVNSDE 343

Query:   358 FLSGSDDGSIELWSLLRKKPVYIVKNAHPLL 388
             FLSGSD+GSI LWS+L+KKPV+IV NAH ++
Sbjct:   344 FLSGSDNGSIALWSILKKKPVFIVNNAHHVI 374

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0006364 "rRNA processing" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2115984 YAO "AT4G05410" [Arabidopsis thaliana (taxid:3702)]

 Score = 1280 (455.6 bits), Expect = 4.6e-135, Sum P(2) = 4.6e-135
 Identities = 245/394 (62%), Positives = 305/394 (77%)

Query:   120 VAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASK 179
             + K L Q+Q E+SGR+RR+IASRVQ+P +TD F V++KHR+SV +VALS+DDS+GFSASK
Sbjct:   122 IKKSLMQKQQEDSGRIRRLIASRVQEPLSTDGFSVIVKHRRSVVSVALSDDDSRGFSASK 181

Query:   180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG 239
             DG+I+HWDVSSGK  KY+WPS+E+LKSHG K  + R    S+  LALAVSSDGRYLA+GG
Sbjct:   182 DGTIMHWDVSSGKTDKYIWPSDEILKSHGMKLREPRNKNHSRESLALAVSSDGRYLATGG 241

Query:   240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST 299
             +DRH+H+WD R +EH+QAFPGHR  VSCL FR GTSEL+SGSFDRTVK+WN ED+A+I+ 
Sbjct:   242 VDRHVHIWDVRTREHVQAFPGHRNTVSCLCFRYGTSELYSGSFDRTVKVWNVEDKAFITE 301

Query:   300 LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFL 359
               GHQ E+L ID LRKER LTVGRDR+M   KVPE +R+++RAPASSLE CCFIS++E+L
Sbjct:   302 NHGHQGEILAIDALRKERALTVGRDRTMLYHKVPESTRMIYRAPASSLESCCFISDNEYL 361

Query:   360 SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGXXXXX 419
             SGSD+G++ LW +L+KKPV++ KNAH         +  +G  +NG  ENG+  P      
Sbjct:   362 SGSDNGTVALWGMLKKKPVFVFKNAHQ--------DIPDGITTNGILENGDHEPVNNNCS 413

Query:   420 XXXXXXXXXTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSG 479
                      T   GSDLAASGAGNG VRLWA+E  T  I+PLY LPL GFVNSLAFAKSG
Sbjct:   414 ANSWVNAVAT-SRGSDLAASGAGNGFVRLWAVE--TNAIRPLYELPLTGFVNSLAFAKSG 470

Query:   480 QFLIAGVGQEPRLGRWGHLPAARNGVLVHPIKLS 513
             +FLIAGVGQE R GRWG L +A+NGV +HP++L+
Sbjct:   471 KFLIAGVGQETRFGRWGCLKSAQNGVAIHPLRLA 504

GO:0000166 "nucleotide binding" evidence=ISS

GO:0000266 "mitochondrial fission" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005730 "nucleolus" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0060321 "acceptance of pollen" evidence=IMP

GO:0001510 "RNA methylation" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

MGI|MGI:2384313 Rrp9 "RRP9, small subunit (SSU) processome component, homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 570 (205.7 bits), Expect = 1.3e-78, Sum P(3) = 1.3e-78
 Identities = 114/278 (41%), Positives = 176/278 (63%)

Query:   120 VAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASK 179
             VA  L+++ LE+ GR+++ +A  +Q P  TD  RVL  H+ S+T + ++ DD   FSA+K
Sbjct:   108 VAGRLKEDVLEQRGRLQKSVAKEIQAPAPTD-IRVLRGHQLSITCLVITPDDLAIFSAAK 166

Query:   180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG 239
             D +I+ W V +G+ +  + P  +       K  QG+    S H+L +A+SSDG+YLASG 
Sbjct:   167 DCTIIKWSVETGRKLHVI-PRAK-------KGAQGQPAGHSSHVLCMAISSDGKYLASGD 218

Query:   240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST 299
               + I +W+ +  +H+  F GHR  VS L FR+GT +L+S S DR+VK+WNA + +Y+ T
Sbjct:   219 RSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRKGTHQLYSTSHDRSVKVWNAAENSYVET 278

Query:   300 LFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEF 358
             LFGHQ  V  +D L +E  +T G RD ++++WK+PEES+LVF     S++C   I+ +  
Sbjct:   279 LFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHM 338

Query:   359 LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQ 396
             +SG+DDGS+ LW L +K+P+ + + AH L  G    EQ
Sbjct:   339 VSGADDGSVALWGLSKKRPLALQREAHGL-HGEPGLEQ 375

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1307881 Rrp9 "ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 575 (207.5 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
 Identities = 115/278 (41%), Positives = 178/278 (64%)

Query:   120 VAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASK 179
             VA  L+++ LE+ GR+++++A  +Q P  TD  RVL  H+ S+T + ++ DD   FSA+K
Sbjct:   111 VAGRLKEDVLEQRGRLQKLVAKEIQAPAPTD-IRVLRGHQLSITCLVITPDDLAIFSAAK 169

Query:   180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG 239
             D +I+ W V +G+ +  + P  +       K  QG+ +  S HIL +A+SSDG+YLASG 
Sbjct:   170 DCTIIKWSVETGRKLHVI-PRAK-------KGTQGQPSGHSSHILCMAISSDGKYLASGD 221

Query:   240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST 299
               + I +W+ +  +H+  F GHR  VS L FR+GT +L+S S DR+VK+WNA + +Y+ T
Sbjct:   222 RSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNAAENSYVET 281

Query:   300 LFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEF 358
             LFGHQ  V  +D L +E  +T G RD ++++WK+PEES+LVF     S++C   I+ +  
Sbjct:   282 LFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHM 341

Query:   359 LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQ 396
             +SG+DDGS+ LW L +K+P+ + + AH L  G    EQ
Sbjct:   342 VSGADDGSVALWGLSKKRPLALQREAHGL-HGEPGLEQ 378

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|I3LQS7 RRP9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 549 (198.3 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
 Identities = 111/278 (39%), Positives = 173/278 (62%)

Query:   120 VAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASK 179
             VA  L+++ LE+ GR+++ +A  +Q P   D  R+L  H+ S+T + ++ DD   FSA+K
Sbjct:   111 VAGKLKEDVLEQRGRLQKSVAKEIQAPAPAD-IRILRGHQLSITCLVITPDDLAIFSAAK 169

Query:   180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG 239
             D +I+ W V SG+ +  + P  +       K  +G+    S HIL +A+SSDG+YLASG 
Sbjct:   170 DCTIIKWSVESGRKLHVI-PRAK-------KGAEGQPPGHSSHILCMAISSDGKYLASGD 221

Query:   240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST 299
               + I +W+ +   H+  F GHR  VS L FR+GT +L+S S DR+VK+WN  + +Y+ T
Sbjct:   222 RSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVET 281

Query:   300 LFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEF 358
             LFGHQ  V  +D L +E  +T G RD ++++WK+PEES+LVF     S++    I+ +  
Sbjct:   282 LFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDSIQLINEEHM 341

Query:   359 LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQ 396
             +SG+DDGS+ LW L +K+P+ + + AH L  G +  EQ
Sbjct:   342 VSGADDGSVALWGLSKKRPLALQREAHGLR-GEQGLEQ 378

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NIY8 F1NIY8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 574 (207.1 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
 Identities = 115/279 (41%), Positives = 176/279 (63%)

Query:   119 LVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSAS 178
             LV + L++  LE+ GR+RR  A  V  P A D  RVL  H+ SVT + +S DD   FSA+
Sbjct:    50 LVGERLKEAVLEQQGRLRRPAAQDVCPP-APDAIRVLRGHQHSVTCLVVSPDDKFIFSAA 108

Query:   179 KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG 238
             KDGS++ W+V SGK +  + P        G K  +G+    + H+L +A+SSDG+YLA+G
Sbjct:   109 KDGSVIKWEVESGKKLCVV-PG-------GKKSTEGQPMGHTAHVLCIAISSDGKYLATG 160

Query:   239 GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298
               ++ I +W+    + +  F GHR  VS L+FR+GT +L+S S DR+VK+WN E+ AY+ 
Sbjct:   161 DRNKLILIWEAATCKRLYTFTGHRDAVSGLSFRKGTYQLYSASHDRSVKVWNVEENAYVE 220

Query:   299 TLFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE 357
             TLFGHQ  +  +D L +E  +T G RD +++ WK+PEES+L+F     S++C   I+ + 
Sbjct:   221 TLFGHQDVITGMDSLSRECCVTSGGRDGTVRFWKIPEESQLIFYGHQGSIDCIQLINEEH 280

Query:   358 FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQ 396
              +SG+DDGS+ LW L +KKP+ +V+ +H      ++ +Q
Sbjct:   281 MVSGADDGSVALWGLAKKKPLALVRQSHGTQGSAQDLQQ 319

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|O43818 RRP9 "U3 small nucleolar RNA-interacting protein 2" [Homo sapiens (taxid:9606)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 114/278 (41%), Positives = 177/278 (63%)

Query:   120 VAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASK 179
             VA  L+++ LE+ GR+++++A  +Q P + D  RVL  H+ S+T + ++ DDS  FSA+K
Sbjct:   108 VAGRLKEDVLEQRGRLQKLVAKEIQAPASAD-IRVLRGHQLSITCLVVTPDDSAIFSAAK 166

Query:   180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG 239
             D SI+ W V SG+ +  + P  +       K  +G+    S H+L +A+SSDG+YLASG 
Sbjct:   167 DCSIIKWSVESGRKLHVI-PRAK-------KGAEGKPPGHSSHVLCMAISSDGKYLASGD 218

Query:   240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST 299
               + I +W+ +  +H+  F GHR  VS L FR+GT +L+S S DR+VK+WN  + +Y+ T
Sbjct:   219 RSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVET 278

Query:   300 LFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEF 358
             LFGHQ  V  +D L +E  +T G RD ++++WK+PEES+LVF     S++C   I+ +  
Sbjct:   279 LFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHM 338

Query:   359 LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQ 396
             +SG+DDGS+ LW L +K+P+ + + AH L  G    EQ
Sbjct:   339 VSGADDGSVALWGLSKKRPLALQREAHGLR-GEPGLEQ 375

GO:0003723 "RNA binding" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1MRM3 RRP9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 549 (198.3 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 110/278 (39%), Positives = 174/278 (62%)

Query:   120 VAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASK 179
             VA  L+++ LE+ GR+++ +A  +Q P+  D  R+L  H+ S+T + ++ DD   FSA+K
Sbjct:   108 VAGRLKEDVLEQRGRLQKSVAKEIQAPDPAD-IRILRGHQLSITCLVVTPDDLAIFSAAK 166

Query:   180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG 239
             D +I+ W V SG+ +  + P  +       K  +G+    S H+L +A+SSDG+YLASG 
Sbjct:   167 DCTIIKWSVESGRKLHVI-PRAK-------KGTEGQPPGHSTHVLCMAISSDGKYLASGD 218

Query:   240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST 299
               + I +W+ +  +H+  F GHR  VS L FR+GT +L+S S DR+VK+WN  + +Y+ T
Sbjct:   219 RSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVET 278

Query:   300 LFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEF 358
             LFGHQ  V  +D L +E  +T G RD ++++WK+PEES+LVF     S++    I+ +  
Sbjct:   279 LFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDSIQLINEEHM 338

Query:   359 LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQ 396
             +SG+DDGS+ LW L +K+P+ + + AH L  G    EQ
Sbjct:   339 VSGADDGSVALWGLSKKRPLALQREAHGLR-GEPGLEQ 375

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|G4MZP1 MGG_07030 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 334 (122.6 bits), Expect = 8.2e-49, Sum P(4) = 8.2e-49
 Identities = 87/244 (35%), Positives = 135/244 (55%)

Query:   119 LVAKILQQEQLEESGRVRRVIASRVQKPEATDE-FRVLLKHRQSVTAVALSEDDSKGFSA 177
             ++A+ L+++  E  G+V R +A  +  P+     FR    + ++VT VA     +  +  
Sbjct:   132 IIAERLKEDVAESKGKVYRHVARELDYPKTYQTGFRW---NPENVTGVATCPPYA--YLV 186

Query:   178 SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGR--------------ATKQSKH- 222
             +KD  +  W +      +Y WP     KS     P  R              A+ +S H 
Sbjct:   187 TKDMFLSKWKLQDLP--QYQWPQTTRKKSKKPNAPPKRRPEKVASLRGDSRKASDKSYHG 244

Query:   223 ----ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF 278
                 ILA+A S DG+++ + G D+ I + D +  + ++A   HR  V+ L F++GT++L+
Sbjct:   245 HTGAILAVAASQDGKWVVTAGADKRIVVHDAQTLKPVRALTHHRDAVTSLAFQRGTNQLY 304

Query:   279 SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESR 337
             SGS DRTVK+WN ++ AYI TLFGHQ  V+ ID L +ER ++ G RDR+ +LWKV EES+
Sbjct:   305 SGSRDRTVKVWNIDNLAYIETLFGHQDHVVDIDALAQERCVSAGARDRTARLWKVVEESQ 364

Query:   338 LVFR 341
             LVFR
Sbjct:   365 LVFR 368

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPAC2E1P5.05 SPAC2E1P5.05 "U3 snoRNP-associated protein Rrp9 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 472 (171.2 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 134/424 (31%), Positives = 212/424 (50%)

Query:   119 LVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSAS 178
             L+A  L+++ LE+ G++     S++      +  ++  +H + +  V   E+    +SA 
Sbjct:   101 LLASRLKEDVLEKKGQMYLDYTSKINPDVKIETAQLRGRHMRPLVGVVAYENFV--YSAD 158

Query:   179 KDGSILHWDVSSGKGVKYLWPSE-EV---LKSH--GAKDPQGRATKQS--KHILALAVSS 230
             K G I  W+    K  +     + E+   +K H    K  + R  +    K I  LA+S+
Sbjct:   159 KSGLIQKWEALQEKDTENRENDDHEIGKAIKLHFRPIKFSRSRRGENDHVKEITCLAISN 218

Query:   231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290
             DGR++ +GGLD  I + D+   E    +  HR  V  L  R+GT+E+FS S DR++K+W+
Sbjct:   219 DGRWIVTGGLDHRIVIRDSVTLEPQHCWKHHRDAVMGLAMRRGTNEMFSCSADRSIKVWS 278

Query:   291 AEDRAYISTLFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAPASSL-- 347
              +  +YI TLFGHQ  +  +D L +ER ++VG RDR+ +LWK+ EES+LVFR+  +S+  
Sbjct:   279 LDQMSYIETLFGHQDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQLVFRSGGTSMKA 338

Query:   348 ---------ECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDE 398
                      +C   I  D F++GSD+G I LWS+ RKKP++     +PL  GL     D 
Sbjct:   339 TAGYMEGSVDCVAMIDEDHFVTGSDNGVIALWSVQRKKPLF----TYPLAHGL-----DP 389

Query:   399 GKISNGHSENGNLNPGXXXXXXXXXXXXXXTVCGGSDLAASGAGNGSVRLWAIESETKDI 458
                   HS     +P                    S+L ASG+ +G++RLW I    +  
Sbjct:   390 ILAPGRHS--AETSPDPVTIPPQPRWITSLAAIPYSNLFASGSWDGNIRLWKIAEGLRSF 447

Query:   459 QPLY---NLPLVGFVNSLAFAKSGQF------LIAGVGQEPRLGRWGHLPAARNGVLVHP 509
             +PL     L + G +NSL+ +  G+       + A  G+E R+GRW  L    N   V  
Sbjct:   448 EPLTIATPLSVYGCINSLSLSLQGKGKQSEVRVFAACGRETRVGRWKTLRGIPNSGFVFN 507

Query:   510 IKLS 513
             I L+
Sbjct:   508 IPLT 511

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0030490 "maturation of SSU-rRNA" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

GO:0032040 "small-subunit processome" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9P7C0	YKU5_SCHPO	No assigned EC number	0.3082	0.8849	0.8664	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028413001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (519 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•	•		•		0.706
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)			•	•	•		•	•	0.655
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•	•		•		0.633
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)			•	•			•		0.623
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•	•		•		0.623
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•	•		•		0.622
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)				•	•		•	•	0.620
	GSVIVG00013990001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (900 aa)			•	•	•		•	•	0.616
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•			•		0.604
	GSVIVG00028006001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (318 aa)				•					0.591

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	513
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-41
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-35
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-35
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-13
smart00320	40	smart00320, WD40, WD40 repeats	6e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
COG5137	279	COG5137, COG5137, Histone chaperone involved in ge	3e-05
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	1e-04
PRK05658	619	PRK05658, PRK05658, RNA polymerase sigma factor Rp	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	8e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  148 bits (376), Expect = 5e-41
 Identities = 86/337 (25%), Positives = 137/337 (40%), Gaps = 64/337 (18%)

Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           R L  H   VT VA S D     + S DG+I  WD+ +G+ ++ L          G   P
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK---------GHTGP 53

Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                     +  +A S+DG YLASG  D+ I LWD    E ++   GH   VS + F  
Sbjct: 54  ----------VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP 103

Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWK 331
               L S S D+T+K+W+ E    ++TL GH   V ++        +    +D +++LW 
Sbjct: 104 DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163

Query: 332 VPEESRL-VFRAPASSLECCCFI-SNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLD 389
           +     +         +    F    ++ LS S DG+I+LW L   K +  ++       
Sbjct: 164 LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR------- 216

Query: 390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW 449
                         GH                   V+SV       L ASG+ +G++R+W
Sbjct: 217 --------------GHEN----------------GVNSVAFSPDGYLLASGSEDGTIRVW 246

Query: 450 AIESETKDIQPLYNLPLV-GFVNSLAFAKSGQFLIAG 485
               + +  + +  L      V SLA++  G+ L +G
Sbjct: 247 ----DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  131 bits (332), Expect = 8e-35
 Identities = 71/296 (23%), Positives = 121/296 (40%), Gaps = 59/296 (19%)

Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
           H   V  VA S D +   S S D +I  WD+ +G+ V+        L  H          
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR-------TLTGH---------- 92

Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSEL 277
             + ++ ++A S DGR L+S   D+ I +WD    + +    GH   V+ + F    + +
Sbjct: 93  --TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV 150

Query: 278 FSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL-RKERVLTVGRDRSMQLWKVPEES 336
            S S D T+K+W+      ++TL GH  EV ++      E++L+   D +++LW +    
Sbjct: 151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210

Query: 337 RL-VFRAPASSLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF 394
            L   R   + +    F  +   L SGS+DG+I +W L   + V  +             
Sbjct: 211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS------------ 258

Query: 395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450
                    GH+                  V+S+         ASG+ +G++R+W 
Sbjct: 259 ---------GHTN----------------SVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  131 bits (332), Expect = 8e-35
 Identities = 66/234 (28%), Positives = 105/234 (44%), Gaps = 24/234 (10%)

Query: 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSE 201
           R+   E  +  R L  H   V++VA S D     S+S+D +I  WDV +GK +       
Sbjct: 76  RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT------ 129

Query: 202 EVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGH 261
             L+ H   D           + ++A S DG ++AS   D  I LWD R  + +    GH
Sbjct: 130 -TLRGH--TDW----------VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176

Query: 262 RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTV 321
            G V+ + F     +L S S D T+K+W+      + TL GH++ V ++       +L  
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236

Query: 322 G-RDRSMQLWKV-PEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWS 371
           G  D ++++W +   E         +S+    + S D     SGS DG+I +W 
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW-SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  116 bits (290), Expect = 5e-28
 Identities = 102/411 (24%), Positives = 163/411 (39%), Gaps = 45/411 (10%)

Query: 117 DSLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFS 176
            SL +  L      ESG +   + S            +L  H  S+T++A S D     S
Sbjct: 23  PSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLS 82

Query: 177 ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAK-----------------------DPQ 213
            S DG+I  WD+ +G+ +                                       D  
Sbjct: 83  GSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142

Query: 214 GRATKQ------SKHILALAVSSDGRYLASGG-LDRHIHLWDTRIQEHIQAFPGHRGPVS 266
                       S+ + +LA S DG+ LASG  LD  I LWD R  + +    GH  PVS
Sbjct: 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS 202

Query: 267 CLTFRQ-GTSELFSGSFDRTVKIWNAEDRAYI-STLFGHQSEVLTIDCLRKERVLTVGRD 324
            L F   G   + SGS D T+++W+      + STL GH   V++        + +   D
Sbjct: 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSD 262

Query: 325 RSMQLWKVPEESRLV--FRAPASSLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
            +++LW +   S L+      +SS+    F  + + L SGS DG++ LW L   K +  +
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 382 K-NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSA------YSWVSSVTVCGGS 434
               H       +F  D   + +G S++G +      +         +S V SV+     
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDG 382

Query: 435 DLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG 485
            + +SG+ +G+VRLW + + +              V SL F+  G+ L +G
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGSLLRN---LDGHTSRVTSLDFSPDGKSLASG 430

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  107 bits (268), Expect = 7e-26
 Identities = 51/236 (21%), Positives = 93/236 (39%), Gaps = 45/236 (19%)

Query: 254 HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL 313
             +   GH G V+C+ F      L +GS D T+K+W+ E    + TL GH   V  +   
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 314 R-KERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFL-SGSDDGSIELW 370
                + +   D++++LW +     +       S +    F  +   L S S D +I++W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV 430
            +   K +  ++                     GH+                 WV+SV  
Sbjct: 121 DVETGKCLTTLR---------------------GHT----------------DWVNSVAF 143

Query: 431 CGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPL-VGFVNSLAFAKSGQFLIAG 485
                  AS + +G+++LW + +     + +  L    G VNS+AF+  G+ L++ 
Sbjct: 144 SPDGTFVASSSQDGTIKLWDLRT----GKCVATLTGHTGEVNSVAFSPDGEKLLSS 195

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  101 bits (251), Expect = 6e-23
 Identities = 90/344 (26%), Positives = 134/344 (38%), Gaps = 32/344 (9%)

Query: 170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229
             S     S +  IL   + S   V     S  +L+ H               I ++A S
Sbjct: 27  SLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------------EDSITSIAFS 74

Query: 230 SDGRYLASGGLDRHIHLWDTRIQEH-IQAFPG-HRGPVSCLTFRQGTSELF---SGSFDR 284
            DG  L SG  D  I LWD    E  I++  G H   VS L             S S D 
Sbjct: 75  PDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134

Query: 285 TVKIWNAE-DRAYISTLFGHQSEVLTIDCLRKERVLTVG--RDRSMQLWKVPEESRL-VF 340
           TVK+W+       I TL GH   V ++      ++L  G   D +++LW +     L   
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL 194

Query: 341 RAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDE 398
                 +    F  +      SGS DG+I LW L   K +    + H     + +F  D 
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-DSVVSSFSPDG 253

Query: 399 GKISNGHSEN-------GNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451
             +++G S+         + +      S   S V SV       L ASG+ +G+VRLW +
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313

Query: 452 ESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495
           E+  K +  L      G V+SL+F+  G  L++G   +  +  W
Sbjct: 314 ETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 92.5 bits (228), Expect = 5e-20
 Identities = 70/243 (28%), Positives = 99/243 (40%), Gaps = 25/243 (10%)

Query: 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSE 201
           R+         R  L         + S D S   S S DG+I  WD+ S           
Sbjct: 224 RLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSS------SLL 277

Query: 202 EVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQ--AFP 259
             L  H            S  +L++A S DG+ LASG  D  + LWD    + +      
Sbjct: 278 RTLSGH------------SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325

Query: 260 GHRGPVSCLTF-RQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERV 318
           GH GPVS L+F   G+  +  GS D T+++W+      + TL GH S VL++      RV
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRV 384

Query: 319 LTVGR-DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRK 375
           ++ G  D +++LW +   S L      +S       S D     SGS D +I LW L   
Sbjct: 385 VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Query: 376 KPV 378
              
Sbjct: 445 LKS 447

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 70.5 bits (171), Expect = 7e-13
 Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 25/173 (14%)

Query: 151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLW------------ 198
             R L  H  SV +VA S D     S S DG++  WD+ +GK +  L             
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335

Query: 199 --PSEEVLKSHGAKD--------PQGRATKQSKH---ILALAVSSDGRYLASGGLDRHIH 245
             P   +L S G+ D          G+  K  +    +L+++ S DGR ++SG  D  + 
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVR 395

Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298
           LWD      ++   GH   V+ L F      L SGS D T+++W+ +      
Sbjct: 396 LWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSV 448

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 253 EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290
           E ++   GH GPV+ + F      L SGS D T+K+W+
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 253 EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290
           + ++   GH GPV+ + F    + L SGS D TV++W+
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 25/171 (14%)

Query: 170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP----QGRATKQSKHILA 225
           D  K F+AS+DG+I+ W +            EE L  +   DP    QG   K    I++
Sbjct: 87  DPQKLFTASEDGTIMGWGI-----------PEEGLTQN-ISDPIVHLQGHTKKVG--IVS 132

Query: 226 LAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRT 285
              S+    LAS G D  +++WD    + ++    H   ++ L +    S L + S D+ 
Sbjct: 133 FHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK 191

Query: 286 VKIWNAEDRAYISTLFGHQS--EVLTIDCLRKERVLTVG----RDRSMQLW 330
           + I +  D   +S++  H S      +   RK+ ++T+G    + R + LW
Sbjct: 192 LNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLW 242

Length = 493

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 19/111 (17%)

Query: 148 ATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSH 207
            T +    L+   +V +V+ S D     S S DG++  WD+S+G  ++ L          
Sbjct: 359 RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD--------- 409

Query: 208 GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF 258
                       +  + +L  S DG+ LASG  D  I LWD +      +F
Sbjct: 410 ----------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 220 SKHILALAVSSDGRYLASGGLDRHIHLWD 248
           +  + ++A S DG+YLASG  D  I LWD
Sbjct: 12  TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 220 SKHILALAVSSDGRYLASGGLDRHIHLWD 248
           +  + ++A S DG  LASG  D  + +WD
Sbjct: 11  TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 34  RRKIDYDDDDIESADSEDYDDEVEKSGPEESEGEEEEEETADEKRKRVATAYLEKIREIA 93
           R  I +D+D+    D+++          EE E  EE +   +E+ + V +    +     
Sbjct: 153 RFNIVWDNDE----DNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNREL 208

Query: 94  RREKEEEEDGDEGRE-VGEKEGER 116
             E+EEE +G +  E V + EGER
Sbjct: 209 NEEEEEEAEGSDDGEDVVDYEGER 232

Length = 279

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 15/107 (14%)

Query: 38  DYDDDDIESA------------DSEDYDDEVEKSGPEESEGEEEEEETADEKRKRVATAY 85
           D+DD++ E              D ED DD+V+ S  EE + E+EEE+     + +   A 
Sbjct: 3   DWDDEEFEPPAPPAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKAL 62

Query: 86  LEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQLEES 132
             KI E   +EK + E  ++G    E++   D L  K+  ++  EES
Sbjct: 63  KAKIEE---KEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEES 106

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated

 Score = 42.5 bits (101), Expect = 5e-04
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 11/119 (9%)

Query: 24  DPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSGPEESEGEEEEEETAD-----EKR 78
           D    GE + R  ID   D     D      E+E+   +E E EEE+E          + 
Sbjct: 157 DRLENGERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESEL 216

Query: 79  KRVATAYLEKIREIARREKEEEEDGDEGREVGEKE--GERDSLVAKI----LQQEQLEE 131
                   + + +  ++ ++ +E   EGR    K+    R+ L  ++    L  +Q++E
Sbjct: 217 PEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKEELKSLRLTSKQIDE 275

Length = 619

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWD 187
           + L  H   VT+VA S D     S S DG+I  WD
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWD 187
           R L  H   VT+VA S D +   S S DG++  WD
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	513
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG2055	514	consensus WD40 repeat protein [General function pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.98
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.91
KOG4227	609	consensus WD40 repeat protein [General function pr	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.87
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.86
KOG0649	325	consensus WD40 repeat protein [General function pr	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG1963	792	consensus WD40 repeat protein [General function pr	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
KOG1963	792	consensus WD40 repeat protein [General function pr	99.83
KOG1334	559	consensus WD40 repeat protein [General function pr	99.83
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG0649	325	consensus WD40 repeat protein [General function pr	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.8
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.79
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.77
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.77
KOG2139	445	consensus WD40 repeat protein [General function pr	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.76
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
KOG2321	703	consensus WD40 repeat protein [General function pr	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.72
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.71
KOG1310	758	consensus WD40 repeat protein [General function pr	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
PRK03629	429	tolB translocation protein TolB; Provisional	99.67
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
KOG2315	566	consensus Predicted translation initiation factor	99.67
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.65
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.62
KOG1334	559	consensus WD40 repeat protein [General function pr	99.62
KOG2139	445	consensus WD40 repeat protein [General function pr	99.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.58
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
PRK05137	435	tolB translocation protein TolB; Provisional	99.58
KOG2321	703	consensus WD40 repeat protein [General function pr	99.57
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
PRK04922	433	tolB translocation protein TolB; Provisional	99.55
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.55
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.55
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.54
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.51
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.5
KOG2314	698	consensus Translation initiation factor 3, subunit	99.49
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.48
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.46
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.45
PRK04792	448	tolB translocation protein TolB; Provisional	99.44
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.44
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.4
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.39
KOG2314	698	consensus Translation initiation factor 3, subunit	99.39
PRK00178	430	tolB translocation protein TolB; Provisional	99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.36
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.36
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.36
COG4946	668	Uncharacterized protein related to the periplasmic	99.36
KOG4547	541	consensus WD40 repeat-containing protein [General	99.35
KOG4547	541	consensus WD40 repeat-containing protein [General	99.35
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.34
PRK04792	448	tolB translocation protein TolB; Provisional	99.34
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.33
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.32
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.29
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.29
KOG2315	566	consensus Predicted translation initiation factor	99.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.28
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.27
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.27
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.25
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.22
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.21
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.2
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.19
COG4946	668	Uncharacterized protein related to the periplasmic	99.19
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.17
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.17
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.15
PRK04043	419	tolB translocation protein TolB; Provisional	99.11
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.08
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.07
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	99.06
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.06
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.04
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.04
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.03
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.02
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.02
PRK04043	419	tolB translocation protein TolB; Provisional	99.0
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.98
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.96
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.96
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.94
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.93
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.9
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.9
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.89
KOG2695	425	consensus WD40 repeat protein [General function pr	98.88
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.86
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.86
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.85
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.85
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.84
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.84
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.83
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.83
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.83
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.8
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.8
KOG2695	425	consensus WD40 repeat protein [General function pr	98.77
KOG3621	726	consensus WD40 repeat-containing protein [General	98.77
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.76
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.73
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.71
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.65
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.64
PRK02888	635	nitrous-oxide reductase; Validated	98.59
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.52
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.5
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.47
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.47
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.46
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.46
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.45
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.43
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.42
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.35
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.34
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.33
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.32
PRK02888	635	nitrous-oxide reductase; Validated	98.29
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.28
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.27
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.27
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.26
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.2
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.16
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.12
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.08
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.07
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.07
KOG3621	726	consensus WD40 repeat-containing protein [General	98.02
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	98.01
COG3391	381	Uncharacterized conserved protein [Function unknow	98.01
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.98
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.97
KOG2395	644	consensus Protein involved in vacuole import and d	97.96
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.94
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.93
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.89
COG3391	381	Uncharacterized conserved protein [Function unknow	97.89
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.87
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.87
PRK13616	591	lipoprotein LpqB; Provisional	97.87
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.86
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.86
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.83
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.83
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.8
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.79
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.79
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.78
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.75
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.74
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.73
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.71
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.69
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.66
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.62
KOG2395	644	consensus Protein involved in vacuole import and d	97.61
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.6
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.49
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.45
PRK13616	591	lipoprotein LpqB; Provisional	97.37
KOG2444	238	consensus WD40 repeat protein [General function pr	97.36
PRK10115	686	protease 2; Provisional	97.23
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.22
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.18
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.12
PHA02713	557	hypothetical protein; Provisional	97.12
PHA02713	557	hypothetical protein; Provisional	97.1
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.09
KOG2444	238	consensus WD40 repeat protein [General function pr	97.07
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.96
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.95
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.94
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.94
PRK10115	686	protease 2; Provisional	96.94
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.87
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.86
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.85
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.77
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.77
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.72
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.67
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.61
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.61
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.5
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.49
PRK13684	334	Ycf48-like protein; Provisional	96.47
COG5167	776	VID27 Protein involved in vacuole import and degra	96.39
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.34
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.33
PHA03098	534	kelch-like protein; Provisional	96.3
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.3
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.19
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.17
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.12
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.12
KOG2247	615	consensus WD40 repeat-containing protein [General	96.08
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.95
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.95
COG5167	776	VID27 Protein involved in vacuole import and degra	95.89
PHA02790	480	Kelch-like protein; Provisional	95.7
PHA02790	480	Kelch-like protein; Provisional	95.67
PHA03098	534	kelch-like protein; Provisional	95.62
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.5
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.42
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.34
PRK13684	334	Ycf48-like protein; Provisional	95.29
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.19
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.09
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.92
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.9
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.74
COG4590	733	ABC-type uncharacterized transport system, permeas	94.69
KOG2247	615	consensus WD40 repeat-containing protein [General	94.63
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.56
COG5276	370	Uncharacterized conserved protein [Function unknow	94.53
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.52
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.44
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.43
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.43
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.39
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.31
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.11
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	94.02
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.87
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	93.75
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.69
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.64
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.47
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.47
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.31
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.31
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.25
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.15
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	93.11
COG5276	370	Uncharacterized conserved protein [Function unknow	92.98
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.78
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.76
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.65
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.6
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.55
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.34
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.98
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.83
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.38
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.34
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.06
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.99
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.72
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.72
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.35
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.32
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	90.2
PLN02153	341	epithiospecifier protein	90.07
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	89.73
COG4590	733	ABC-type uncharacterized transport system, permeas	89.59
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.45
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	89.39
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.87
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.65
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.4
KOG1189	960	consensus Global transcriptional regulator, cell d	87.74
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.61
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.17
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.1
PF12768	281	Rax2: Cortical protein marker for cell polarity	86.71
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.1
PLN02153	341	epithiospecifier protein	86.07
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.03
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.81
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.78
PLN02193	470	nitrile-specifier protein	85.43
PF03066	149	Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301	85.18
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	84.99
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	84.91
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	84.15
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	84.1

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.6e-59  Score=406.93  Aligned_cols=469  Identities=50%  Similarity=0.829  Sum_probs=394.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCcccccCCCCCcccccccccCCHHHHHhH
Q 010296            1 MKYKNTKKKGPAPRGKGKFSINQDPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSGPEESEGEEEEEETADEKRKR   80 (513)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ee~~~~~~~~   80 (513)
                      ||...+|+..+|.+++...+....||...++..++..-.++++.++.++|++++-   ...++++|+|.++|+..++|.|
T Consensus         1 mk~~~kkkg~~a~~~gK~~~~~~~~~~~~~~~~~~~~~~~~ed~eei~Sd~Een~---~~g~~e~e~e~~~Eta~ekr~R   77 (479)
T KOG0299|consen    1 MKDGKKKKGKGAKRKGKPGSGGGKPFKSEEEAERKKNRDDDEDAEEIESDEEENS---LAGEEEEEDEFEEETAGEKRLR   77 (479)
T ss_pred             CCccccccCccccCCCCCCCCCCCCccccchhhccccCCchhhhhhhcccccccc---ccchhhhcccchhcchhHHHHH
Confidence            6777444445667777777888888877666555211111111222222211111   1115556667778899999999


Q ss_pred             HHHHHHHHHHHHHhhhccccccCcccccccccccchhHHHHHHhhHHHHHhcCceeEEeeccccCCCcccchhhhhccCC
Q 010296           81 VATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQ  160 (513)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  160 (513)
                      +++.++.+.++..+ +..+            .....+..++..|+.++.+..|+.++.++.++..+.... ++.+..|.-
T Consensus        78 lA~e~L~~i~e~~E-~~~d------------~~~~~~e~va~rLked~le~~Gr~~r~~a~~v~~~~s~~-~~~~~~H~~  143 (479)
T KOG0299|consen   78 LAEEYLDEIREIEE-DNFD------------ADDLDDELVASRLKEDVLEQSGRVRRLVADKVQAPESSD-FRVIGKHQL  143 (479)
T ss_pred             HHHHHHHHHHhhhh-cccc------------cchhhHHHHHHHHHHHHHHhcceeehhhhhhcccccccc-ceeeccccC
Confidence            99999998872221 1110            112233689999999999999999999999999999888 899999999


Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL  240 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  240 (513)
                      +|+||+++|+.+++++++.+++|.-|++.+++....+++...++..+........ ..|...|.+++.+++|+|||+|+.
T Consensus       144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dgkylatgg~  222 (479)
T KOG0299|consen  144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDGKYLATGGR  222 (479)
T ss_pred             cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcCCCcEEEecCC
Confidence            9999999999999999999999999999999998888888777776665544444 599999999999999999999999


Q ss_pred             CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEE
Q 010296          241 DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLT  320 (513)
Q Consensus       241 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  320 (513)
                      |..|.||+..+.+.++.+.+|.+.|.+++|-.....|++++.|++|++|++.....+.++.+|+..|..|......++++
T Consensus       223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vt  302 (479)
T KOG0299|consen  223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVT  302 (479)
T ss_pred             CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEE
Confidence            99999999999999999999999999999999889999999999999999999999999999999999999998899986


Q ss_pred             Ee-CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcC
Q 010296          321 VG-RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEG  399 (513)
Q Consensus       321 ~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                      ++ .|+++++|++.....+.+.++...+.|++|..+..|++|+.+|.|.+|++.+.+|+++....|+.....        
T Consensus       303 VGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~--------  374 (479)
T KOG0299|consen  303 VGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL--------  374 (479)
T ss_pred             eccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCc--------
Confidence            55 999999999999899999999999999999999999999999999999999999999999888754221        


Q ss_pred             ccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCC
Q 010296          400 KISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSG  479 (513)
Q Consensus       400 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  479 (513)
                                       ....++.||++|+..|...++|+|+.+|.|++|.+..+...+.++..++..+.|++++|+++|
T Consensus       375 -----------------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sg  437 (479)
T KOG0299|consen  375 -----------------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSG  437 (479)
T ss_pred             -----------------cccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCC
Confidence                             012333689999999999999999999999999999998889999999999999999999999


Q ss_pred             CEEEEEecCCCcccccccCCCcccceEEEeccc
Q 010296          480 QFLIAGVGQEPRLGRWGHLPAARNGVLVHPIKL  512 (513)
Q Consensus       480 ~~l~~~~~~dg~v~~W~~~~~~~~~~~~~~l~~  512 (513)
                      ++|++|.|...++..|-+.+..++...+.++.|
T Consensus       438 k~ivagiGkEhRlGRW~~~k~~~~~~~v~~~~l  470 (479)
T KOG0299|consen  438 KRIVAGIGKEHRLGRWWCLKSGKNSGVVSPRRL  470 (479)
T ss_pred             CEEEEecccccccceeeEeecccccceeeeeee
Confidence            999999999999999999999999888887765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-50  Score=344.41  Aligned_cols=292  Identities=24%  Similarity=0.412  Sum_probs=258.7

Q ss_pred             ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ..+-..+.||.++|.|++|+|+|..|+||+.|.++++||+.+.....+                   ..+|..-|.|++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvaw  165 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAW  165 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEE
Confidence            456677899999999999999999999999999999999999887664                   4899999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCccee-eeccCcCCCeEEEEEec-----CCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGHRGPVSCLTFRQ-----GTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      +|||+.||+|+.||.|++||..+++++ ..|.+|...|++++|.|     ..++|++++.||.|+|||+..+.++..+.+
T Consensus       166 sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg  245 (480)
T KOG0271|consen  166 SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG  245 (480)
T ss_pred             CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc
Confidence            999999999999999999999988765 67999999999999965     567899999999999999999999999999


Q ss_pred             ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeec-----------C---------------
Q 010296          303 HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFIS-----------N---------------  355 (513)
Q Consensus       303 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~-----------~---------------  355 (513)
                      |..+|+|+.|-.++.+++++.|++|++|+...+... .+.+|...|+.++.+.           .               
T Consensus       246 HT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al  325 (480)
T KOG0271|consen  246 HTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL  325 (480)
T ss_pred             CccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence            999999999998999999999999999999887655 6788888888887761           0               


Q ss_pred             -----------CeEEEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcc
Q 010296          356 -----------DEFLSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYS  423 (513)
Q Consensus       356 -----------~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  423 (513)
                                 .++++|+.|.++.+|+....+ ++..+                                     .+|..
T Consensus       326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm-------------------------------------tgHq~  368 (480)
T KOG0271|consen  326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM-------------------------------------TGHQA  368 (480)
T ss_pred             HHHHHhhccCcceeEEecCCceEEEecccccccchhhh-------------------------------------hchhh
Confidence                       148999999999999976543 55544                                     44555


Q ss_pred             eEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          424 WVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       424 ~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      -|+.+.||||++++|+++-|..|++|+-.++ +.+..+..  |-++|..|+|+.|.++|+++ +.|.+|++|++.+.
T Consensus       369 lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRG--Hv~~VYqvawsaDsRLlVS~-SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  369 LVNHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRG--HVAAVYQVAWSADSRLLVSG-SKDSTLKVWDVRTK  441 (480)
T ss_pred             heeeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhh--ccceeEEEEeccCccEEEEc-CCCceEEEEEeeee
Confidence            5999999999999999999999999999998 55555554  89999999999999999998 99999999998754

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.6e-49  Score=342.65  Aligned_cols=280  Identities=19%  Similarity=0.328  Sum_probs=259.7

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC--CCE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD--GRY  234 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~  234 (513)
                      +-+.+|..+.|++++..|+||+.+|.++||+..+...+.++                   .+|...|.++.|+|.  +..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-------------------~gH~~~v~~~~fhP~~~~~~  233 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-------------------RGHTSRVGAAVFHPVDSDLN  233 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-------------------eccccceeeEEEccCCCccc
Confidence            66889999999999999999999999999999998776654                   899999999999996  668


Q ss_pred             EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296          235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  314 (513)
                      ||+|+.||++++|++.+..++..+.+|...|..++|+|+|++|+|++.|.+-++||++++..+....+|...|.+++|++
T Consensus       234 lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~  313 (459)
T KOG0272|consen  234 LATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP  313 (459)
T ss_pred             eeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             CCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCC
Q 010296          315 KERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGL  391 (513)
Q Consensus       315 ~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  391 (513)
                      +|.++ +|+.|..-+|||++++.++ .+.+|...|..+.|+|+|+ +++|+.|++++|||++...+++++.         
T Consensus       314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip---------  384 (459)
T KOG0272|consen  314 DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP---------  384 (459)
T ss_pred             CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc---------
Confidence            99777 8889999999999999887 6778999999999999997 8899999999999999999988874         


Q ss_pred             CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEE
Q 010296          392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFV  470 (513)
Q Consensus       392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v  470 (513)
                                                  +|..-|+.++|+| .|.+|+|++.|++++||...+. .+++.+..  |.+.|
T Consensus       385 ----------------------------AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaG--He~kV  433 (459)
T KOG0272|consen  385 ----------------------------AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAG--HEGKV  433 (459)
T ss_pred             ----------------------------cccchhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcC--Cccce
Confidence                                        4444599999999 7899999999999999999888 66666665  89999


Q ss_pred             EEEEeecCCCEEEEEecCCCcccccc
Q 010296          471 NSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       471 ~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      .++.++|++.+++++ +.|.++++|.
T Consensus       434 ~s~Dis~d~~~i~t~-s~DRT~KLW~  458 (459)
T KOG0272|consen  434 ISLDISPDSQAIATS-SFDRTIKLWR  458 (459)
T ss_pred             EEEEeccCCceEEEe-ccCceeeecc
Confidence            999999999999999 9999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.6e-49  Score=337.35  Aligned_cols=296  Identities=26%  Similarity=0.411  Sum_probs=264.9

Q ss_pred             eccccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC
Q 010296          140 ASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ  219 (513)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (513)
                      ..++|++....+..+.++|...|.|++|+|||+.||+|+.||+|++||..+++++-.                  .+.+|
T Consensus       138 TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~------------------~l~gH  199 (480)
T KOG0271|consen  138 TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR------------------ALRGH  199 (480)
T ss_pred             eEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc------------------cccCc
Confidence            456899999999999999999999999999999999999999999999999887653                  36899


Q ss_pred             cccEEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          220 SKHILALAVSS-----DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       220 ~~~v~~~~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      ...|++++|.|     ..++||+++.||.|+|||+..+.++..+.+|+.+|+|+.|-.+ .+|++++.|++|++|+...|
T Consensus       200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG  278 (480)
T KOG0271|consen  200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG  278 (480)
T ss_pred             ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccch
Confidence            99999999987     5679999999999999999999999999999999999999765 48999999999999999999


Q ss_pred             ceeEEeecccCCeEEEEeeCC-------------------------------------CeEEEEeCCCcEEEEecCCCe-
Q 010296          295 AYISTLFGHQSEVLTIDCLRK-------------------------------------ERVLTVGRDRSMQLWKVPEES-  336 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~-------------------------------------~~~~~~~~d~~i~iwd~~~~~-  336 (513)
                      .+...+.+|...|+.++.+.+                                     .++++++.|.++.+|+....+ 
T Consensus       279 ~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk  358 (480)
T KOG0271|consen  279 KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK  358 (480)
T ss_pred             hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence            999999999999999988711                                     148899999999999986544 


Q ss_pred             ee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCC
Q 010296          337 RL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPG  414 (513)
Q Consensus       337 ~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  414 (513)
                      ++ ...+|..-|..+.|+|+++ +++++.|..|++|+.++|+.+.++.                                
T Consensus       359 pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR--------------------------------  406 (480)
T KOG0271|consen  359 PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR--------------------------------  406 (480)
T ss_pred             chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh--------------------------------
Confidence            33 6778999999999999997 6799999999999999999988874                                


Q ss_pred             CcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC-cccEEEEEEeecCCCEEEEEecCCCccc
Q 010296          415 SYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFAKSGQFLIAGVGQEPRLG  493 (513)
Q Consensus       415 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~~~~dg~v~  493 (513)
                           +|-..|+.++|+.|.++|++|+.|.++++|++++.    +....++ |...|.++.|+|||+.+++| |.|..++
T Consensus       407 -----GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk----Kl~~DLpGh~DEVf~vDwspDG~rV~sg-gkdkv~~  476 (480)
T KOG0271|consen  407 -----GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK----KLKQDLPGHADEVFAVDWSPDGQRVASG-GKDKVLR  476 (480)
T ss_pred             -----hccceeEEEEeccCccEEEEcCCCceEEEEEeeee----eecccCCCCCceEEEEEecCCCceeecC-CCceEEE
Confidence                 45555999999999999999999999999999987    2333333 89999999999999999998 9999999


Q ss_pred             ccc
Q 010296          494 RWG  496 (513)
Q Consensus       494 ~W~  496 (513)
                      +|.
T Consensus       477 lw~  479 (480)
T KOG0271|consen  477 LWR  479 (480)
T ss_pred             eec
Confidence            995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.1e-45  Score=302.73  Aligned_cols=285  Identities=24%  Similarity=0.430  Sum_probs=255.0

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      ++|++|.+.|+++.|++|+++|++++.||.+.|||.-+....+.+                   .-....|..++|+|.|
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-------------------pl~s~WVMtCA~sPSg  109 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-------------------PLPSSWVMTCAYSPSG  109 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-------------------ecCceeEEEEEECCCC
Confidence            789999999999999999999999999999999999887766544                   2345679999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCc------ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC
Q 010296          233 RYLASGGLDRHIHLWDTRIQ------EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE  306 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  306 (513)
                      +++|+|+.|+...||++.+.      ...+.+.+|.+.+.|+.|.++ .+|+|++.|.+..+||+.+++.+..|.+|.+.
T Consensus       110 ~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD  188 (343)
T KOG0286|consen  110 NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGD  188 (343)
T ss_pred             CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCccc
Confidence            99999999999999999855      345678999999999999884 67999999999999999999999999999999


Q ss_pred             eEEEEeeC-CC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEee
Q 010296          307 VLTIDCLR-KE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       307 v~~~~~~~-~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      |.+++++| ++ .|++++.|+..++||++.+... .|.+|...|.++.|.|+|. |++|+.|+++++||++..+.+..+.
T Consensus       189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys  268 (343)
T KOG0286|consen  189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS  268 (343)
T ss_pred             EEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence            99999999 54 7789999999999999998766 7899999999999999996 9999999999999999999888876


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeee
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLY  462 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~  462 (513)
                      ..                                   .....|++++||..|++|++|..|.++.+||.-.+ .....+.
T Consensus       269 ~~-----------------------------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~  312 (343)
T KOG0286|consen  269 HD-----------------------------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLA  312 (343)
T ss_pred             cC-----------------------------------cccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEee
Confidence            32                                   22234999999999999999999999999999877 3444454


Q ss_pred             ecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          463 NLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       463 ~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      .  |...|+|+..+|||..+++| +.|..|+||.
T Consensus       313 G--HeNRvScl~~s~DG~av~Tg-SWDs~lriW~  343 (343)
T KOG0286|consen  313 G--HENRVSCLGVSPDGMAVATG-SWDSTLRIWA  343 (343)
T ss_pred             c--cCCeeEEEEECCCCcEEEec-chhHheeecC
Confidence            4  99999999999999999999 9999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.6e-44  Score=311.59  Aligned_cols=253  Identities=20%  Similarity=0.333  Sum_probs=234.2

Q ss_pred             cccCCCcccchhhhhccCCCeEEEEECCC--CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC
Q 010296          142 RVQKPEATDEFRVLLKHRQSVTAVALSED--DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ  219 (513)
Q Consensus       142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (513)
                      ++|..+....+.+|.+|++.|.++.|+|.  +..||||+.||++++|++.+...+..                   +.+|
T Consensus       200 kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~-------------------l~gH  260 (459)
T KOG0272|consen  200 KVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD-------------------LEGH  260 (459)
T ss_pred             eEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh-------------------hhcc
Confidence            46788888999999999999999999997  66899999999999999998777664                   4799


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST  299 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  299 (513)
                      ...|..++|+|+|++|+|++.|.+-++||+.++..+....+|...|.+++|.|+|.++++|+.|..-+|||+++++++..
T Consensus       261 ~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~  340 (459)
T KOG0272|consen  261 LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF  340 (459)
T ss_pred             hhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccCCeEEEEeeCCCeE-EEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeec-CCe-EEEEeCCCCEEEEecCCC
Q 010296          300 LFGHQSEVLTIDCLRKERV-LTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFIS-NDE-FLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~-~~~-~~~~~~dg~i~iwd~~~~  375 (513)
                      +.+|..+|.++.|+|+|+. ++|+.|++++|||++....+ .+..|.+-|..+.|+| .|. |++++.|++++||...+.
T Consensus       341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~  420 (459)
T KOG0272|consen  341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW  420 (459)
T ss_pred             ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence            9999999999999999965 58999999999999987765 6788999999999998 454 779999999999999999


Q ss_pred             CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      .++..+.                                     +|.+.|.++.+++++.+|+|++.|.++++|.
T Consensus       421 ~~~ksLa-------------------------------------GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  421 SPLKSLA-------------------------------------GHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccchhhc-------------------------------------CCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9998884                                     4555599999999999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-42  Score=281.16  Aligned_cols=293  Identities=24%  Similarity=0.353  Sum_probs=244.1

Q ss_pred             chhhhhccCCCeEEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          151 EFRVLLKHRQSVTAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ...++.+|++.|+.++..+. ...|++++.|.++.+|++......              ...++..+.+|...|..++.+
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~--------------~G~~~r~~~GHsH~v~dv~~s   72 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK--------------YGVPVRRLTGHSHFVSDVVLS   72 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc--------------cCceeeeeeccceEecceEEc
Confidence            34578899999999999987 567789999999999999765321              123445678999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc-cCCeE
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH-QSEVL  308 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~  308 (513)
                      ++|+++++++.|+++++||+.+++..+.|.+|...|.+++|+++.+.+++|+.|.+|++|++............ ...|.
T Consensus        73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs  152 (315)
T KOG0279|consen   73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS  152 (315)
T ss_pred             cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999998765443333322 78999


Q ss_pred             EEEeeCCC---eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          309 TIDCLRKE---RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       309 ~~~~~~~~---~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      |+.|+|+.   .+++++.|++|++||+++.+.. .+.+|...++.+.++|+|. +++|+.||.+.+||++.++.++.+..
T Consensus       153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a  232 (315)
T KOG0279|consen  153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA  232 (315)
T ss_pred             EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC
Confidence            99999973   6779999999999999987766 7889999999999999997 66999999999999999999888754


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                      ..                                      .|.+++|+|+.-+|+.+... .|+|||+.+. ..+..+..
T Consensus       233 ~~--------------------------------------~v~sl~fspnrywL~~at~~-sIkIwdl~~~-~~v~~l~~  272 (315)
T KOG0279|consen  233 FD--------------------------------------IVNSLCFSPNRYWLCAATAT-SIKIWDLESK-AVVEELKL  272 (315)
T ss_pred             CC--------------------------------------eEeeEEecCCceeEeeccCC-ceEEEeccch-hhhhhccc
Confidence            33                                      39999999998777766544 5999999887 22222211


Q ss_pred             c--C-----cccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          464 L--P-----LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       464 ~--~-----~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      -  .     ..-...+++|++||..|+++ -.|+.|++|.+.
T Consensus       273 d~~g~s~~~~~~~clslaws~dG~tLf~g-~td~~irv~qv~  313 (315)
T KOG0279|consen  273 DGIGPSSKAGDPICLSLAWSADGQTLFAG-YTDNVIRVWQVA  313 (315)
T ss_pred             cccccccccCCcEEEEEEEcCCCcEEEee-ecCCcEEEEEee
Confidence            0  0     12235778999999999999 889999999764

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.2e-41  Score=287.40  Aligned_cols=294  Identities=25%  Similarity=0.420  Sum_probs=259.5

Q ss_pred             CcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296          147 EATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL  226 (513)
Q Consensus       147 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (513)
                      .+.+..+.+.+|.+.|.|+++.|...+|+||+.|++|+|||+.+++...++                   .+|...|..+
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-------------------tGhi~~vr~v  199 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-------------------TGHIETVRGV  199 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-------------------cchhheeeee
Confidence            356788999999999999999999999999999999999999999988755                   7899999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC
Q 010296          227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE  306 (513)
Q Consensus       227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  306 (513)
                      ++|+-..||++++.|+.|+.||+...+.++.+.+|-..|.|++.+|.-..|++|+.|.+++|||+++...+..+.+|..+
T Consensus       200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~  279 (460)
T KOG0285|consen  200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP  279 (460)
T ss_pred             eecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeC-CCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          307 VLTIDCLR-KERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       307 v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      |.++.+.| +.++++++.|++|++||++.++.. ....|...+.+++.+|... |++++.| .|+-|++..+..+..+  
T Consensus       280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl--  356 (460)
T KOG0285|consen  280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL--  356 (460)
T ss_pred             ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc--
Confidence            99999988 679999999999999999988765 6778889999999999876 5555554 6999999999877765  


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                                                         ..|...|.+++...|+ ++++|+.+|.|.+||.+++. .++....
T Consensus       357 -----------------------------------sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~-nyQ~~~t  399 (460)
T KOG0285|consen  357 -----------------------------------SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGH-NYQRGQT  399 (460)
T ss_pred             -----------------------------------ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCc-ccccccc
Confidence                                               3444449999998886 88999999999999999883 2333221


Q ss_pred             ------cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          464 ------LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       464 ------~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                            +.....|.+.+|...|..|+++ ..|.+|++|.-...
T Consensus       400 ~vqpGSl~sEagI~as~fDktg~rlit~-eadKtIk~~keDe~  441 (460)
T KOG0285|consen  400 IVQPGSLESEAGIFASCFDKTGSRLITG-EADKTIKMYKEDEH  441 (460)
T ss_pred             cccCCccccccceeEEeecccCceEEec-cCCcceEEEecccc
Confidence                  1234568999999999999999 99999999965443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-41  Score=285.98  Aligned_cols=288  Identities=24%  Similarity=0.437  Sum_probs=260.3

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+                   .+|...|..|+|+
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-------------------rGHt~sv~di~~~  159 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-------------------RGHTDSVFDISFD  159 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-------------------hccccceeEEEEe
Confidence            344567789999999999999999999999999999999999987644                   8999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCC-cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          230 SDGRYLASGGLDRHIHLWDTRI-QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      ..|++|++++.|-.+++||..+ .+++..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|...|.
T Consensus       160 a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr  239 (406)
T KOG0295|consen  160 ASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR  239 (406)
T ss_pred             cCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE
Confidence            9999999999999999999876 567888889999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecC---------------C-eEEEEeCCCCEEEE
Q 010296          309 TIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISN---------------D-EFLSGSDDGSIELW  370 (513)
Q Consensus       309 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~---------------~-~~~~~~~dg~i~iw  370 (513)
                      .+..+.||.++ +++.|.+|++|-+.++.+. .++.|..+|.|++|.|.               + .+++++.|++|++|
T Consensus       240 ~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w  319 (406)
T KOG0295|consen  240 MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW  319 (406)
T ss_pred             EEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence            99999999777 7889999999999988665 67889999999998652               1 36799999999999


Q ss_pred             ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      |+.++.++.++                                     .+|..||..++|+|.|+||+++..|+++++||
T Consensus       320 dv~tg~cL~tL-------------------------------------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd  362 (406)
T KOG0295|consen  320 DVSTGMCLFTL-------------------------------------VGHDNWVRGVAFSPGGKYILSCADDKTLRVWD  362 (406)
T ss_pred             eccCCeEEEEE-------------------------------------ecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence            99999999998                                     56778899999999999999999999999999


Q ss_pred             eCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          451 IESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      +++. +..+.+.  +|...|+++.|+.+..++++| +-|.++++|..
T Consensus       363 l~~~-~cmk~~~--ah~hfvt~lDfh~~~p~VvTG-sVdqt~KvwEc  405 (406)
T KOG0295|consen  363 LKNL-QCMKTLE--AHEHFVTSLDFHKTAPYVVTG-SVDQTVKVWEC  405 (406)
T ss_pred             eccc-eeeeccC--CCcceeEEEecCCCCceEEec-cccceeeeeec
Confidence            9998 4444444  488899999999999999999 99999999964

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.8e-40  Score=268.38  Aligned_cols=277  Identities=18%  Similarity=0.340  Sum_probs=233.6

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI  251 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~  251 (513)
                      -+|+++|.|.+|++|...+|.+..++                   ....+.|..+...|+++.||+++. ..|++||+++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTi-------------------qh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S   70 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTI-------------------QHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNS   70 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEE-------------------ecCccceeeEEEcCCcchhhhccC-CeeEEEEccC
Confidence            47889999999999999999998876                   334567999999999999999884 6799999998


Q ss_pred             cc--eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC-CeEEEEeCCCcEE
Q 010296          252 QE--HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQ  328 (513)
Q Consensus       252 ~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~  328 (513)
                      +.  ++.+|.+|...|+++.|..+|+.+++|+.||+++|||++...+.+.+. |..+|+++..+|+ +.|+++..+|.|+
T Consensus        71 ~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~ir  149 (311)
T KOG0315|consen   71 NNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIR  149 (311)
T ss_pred             CCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEE
Confidence            75  588999999999999999999999999999999999999976666555 7899999999996 5889999999999


Q ss_pred             EEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296          329 LWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH  405 (513)
Q Consensus       329 iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  405 (513)
                      +||+......  ........+.++.+.|+|. ++++...|+.++|++-+......+...+..                  
T Consensus       150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~------------------  211 (311)
T KOG0315|consen  150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF------------------  211 (311)
T ss_pred             EEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe------------------
Confidence            9999987654  3344457899999999997 667778899999999875544444332221                  


Q ss_pred             CCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE
Q 010296          406 SENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~  485 (513)
                                   ..|.+.+..+.+||++++||++|.|.+++||++.+..+.-..+.  .|...+..++||.||+||+++
T Consensus       212 -------------~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTa  276 (311)
T KOG0315|consen  212 -------------QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTA  276 (311)
T ss_pred             -------------ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEec
Confidence                         66778899999999999999999999999999988622222222  378899999999999999999


Q ss_pred             ecCCCcccccccCCCccc
Q 010296          486 VGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       486 ~~~dg~v~~W~~~~~~~~  503 (513)
                       +.|+.+++|++..+.+.
T Consensus       277 -ssd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  277 -SSDHTARLWDLSAGKEV  293 (311)
T ss_pred             -CCCCceeecccccCcee
Confidence             88899999999887643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4e-39  Score=274.54  Aligned_cols=319  Identities=18%  Similarity=0.223  Sum_probs=258.4

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      +..|..|+++|++++.+|+.++++|||.|..-.||++.++.....                   +.+|...|+++.|+.+
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~Fshd  117 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSFSHD  117 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEEccC
Confidence            457889999999999999999999999999999999999986654                   4899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEE
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID  311 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  311 (513)
                      |.+||+|..+|.|+||...++.....+......|.-|.|+|-+..|++|+.||.|.+|.+.++...+.+.+|..++++-.
T Consensus       118 gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~  197 (399)
T KOG0296|consen  118 GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE  197 (399)
T ss_pred             ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence            99999999999999999999998888876677888999999999999999999999999999888889999999999999


Q ss_pred             eeCCC-eEEEEeCCCcEEEEecCCCeeeEEec--CCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296          312 CLRKE-RVLTVGRDRSMQLWKVPEESRLVFRA--PASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPL  387 (513)
Q Consensus       312 ~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (513)
                      |.|+| +++++..||+|++|++.+++++....  ......++.++..+. ++.|+.++.+++....+++.+.......+.
T Consensus       198 f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~  277 (399)
T KOG0296|consen  198 FIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPE  277 (399)
T ss_pred             ccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcc
Confidence            99998 56688899999999999998774332  234566777777775 668888999999998888887776631111


Q ss_pred             c--------cCCCCc-----------ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEE
Q 010296          388 L--------DGLKNF-----------EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRL  448 (513)
Q Consensus       388 ~--------~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~v  448 (513)
                      .        ..+.+.           ..-.+.|.++......+    -+...|...|+.+.|-+ ..+|++++.+|.|+.
T Consensus       278 l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~----R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~  352 (399)
T KOG0296|consen  278 LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL----RHICEHEDGVTKLKWLN-TDYLLTACANGKVRQ  352 (399)
T ss_pred             ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh----heeccCCCceEEEEEcC-cchheeeccCceEEe
Confidence            1        111111           11112222222211111    12245677799999999 689999999999999


Q ss_pred             EEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          449 WAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       449 wd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      ||.+++ +....+..  |...|.+++++|+.++++++ +.|++.+++++.
T Consensus       353 wDaRtG-~l~~~y~G--H~~~Il~f~ls~~~~~vvT~-s~D~~a~VF~v~  398 (399)
T KOG0296|consen  353 WDARTG-QLKFTYTG--HQMGILDFALSPQKRLVVTV-SDDNTALVFEVP  398 (399)
T ss_pred             eecccc-ceEEEEec--CchheeEEEEcCCCcEEEEe-cCCCeEEEEecC
Confidence            999999 44444443  89999999999999999999 999999998763

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5e-40  Score=288.86  Aligned_cols=303  Identities=22%  Similarity=0.362  Sum_probs=251.3

Q ss_pred             chhhhhccCCCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          151 EFRVLLKHRQSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      .++.+. |..+|.+++|+|-.. .|++|+.|-+.++|++.........   ...++ +.. .........+..|++++|+
T Consensus       171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~---q~~lr-h~~-~~~~~s~~~nkdVT~L~Wn  244 (524)
T KOG0273|consen  171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST---QLVLR-HCI-REGGKSVPSNKDVTSLDWN  244 (524)
T ss_pred             ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch---hhhhh-hhh-hhhcccCCccCCcceEEec
Confidence            344555 999999999999766 8899999999999999751110000   00000 000 0000112335679999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEE
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLT  309 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  309 (513)
                      .+|..||+|+.+|.+++|+. .|..+.+|..|.++|.++.|+..|.||++++.|+++.+||..++.....+.-|..+...
T Consensus       245 ~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD  323 (524)
T KOG0273|consen  245 NDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD  323 (524)
T ss_pred             CCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccc
Confidence            99999999999999999995 57888999999999999999999999999999999999999999999999889888889


Q ss_pred             EEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296          310 IDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPL  387 (513)
Q Consensus       310 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (513)
                      +.|-.+..|++++.|+.|+++.+....+. ++.+|...|.++.|.|.+. |++++.|++++||..........+.     
T Consensus       324 VdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-----  398 (524)
T KOG0273|consen  324 VDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-----  398 (524)
T ss_pred             eEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-----
Confidence            99999999999999999999999877665 7888999999999999997 6799999999999988877766663     


Q ss_pred             ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC---------CEEEEecCCCcEEEEEeCCCCcce
Q 010296          388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS---------DLAASGAGNGSVRLWAIESETKDI  458 (513)
Q Consensus       388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~g~~dg~v~vwd~~~~~~~~  458 (513)
                                                      .|...|..+.|+|.|         ..|++++.|++|++||+..+ .++
T Consensus       399 --------------------------------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i  445 (524)
T KOG0273|consen  399 --------------------------------AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPI  445 (524)
T ss_pred             --------------------------------hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-cee
Confidence                                            344448999999865         47999999999999999998 455


Q ss_pred             eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          459 QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       459 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ..+.  .|..+|.+|+|||+|+|||+| +.||.|.+|+...++
T Consensus       446 ~~f~--kH~~pVysvafS~~g~ylAsG-s~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  446 HTLM--KHQEPVYSVAFSPNGRYLASG-SLDGCVHIWSTKTGK  485 (524)
T ss_pred             Eeec--cCCCceEEEEecCCCcEEEec-CCCCeeEeccccchh
Confidence            5443  399999999999999999999 999999999887664

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=9e-40  Score=268.79  Aligned_cols=275  Identities=26%  Similarity=0.413  Sum_probs=233.1

Q ss_pred             hcCceeEEeecccc--CCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCC
Q 010296          131 ESGRVRRVIASRVQ--KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHG  208 (513)
Q Consensus       131 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  208 (513)
                      ...+....+.+.+-  +.....+++.+.||...|..+..+++|++.++++.|+++++||+.+++..+.|           
T Consensus        33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-----------  101 (315)
T KOG0279|consen   33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-----------  101 (315)
T ss_pred             EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-----------
Confidence            33444555555553  34556678899999999999999999999999999999999999999766644           


Q ss_pred             CCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecC--CCeEEEEeCCCc
Q 010296          209 AKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQG--TSELFSGSFDRT  285 (513)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~  285 (513)
                              .+|...|.+++|+|+.+.+++|+.|.+|++|++........... +...|+|+.|+|+  ..+|++++.|++
T Consensus       102 --------~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt  173 (315)
T KOG0279|consen  102 --------VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT  173 (315)
T ss_pred             --------EecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence                    79999999999999999999999999999999875444333332 3789999999998  678999999999


Q ss_pred             EEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCC
Q 010296          286 VKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDD  364 (513)
Q Consensus       286 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d  364 (513)
                      |++||+++.+....+.+|.+.++.+.++|||.++ +|+.||.+.+||++.++.+....+...|.+++|+|+...++...+
T Consensus       174 vKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~  253 (315)
T KOG0279|consen  174 VKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATA  253 (315)
T ss_pred             EEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccC
Confidence            9999999999999999999999999999999766 888999999999999999999999999999999999987777777


Q ss_pred             CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC
Q 010296          365 GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG  444 (513)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg  444 (513)
                      ..|+|||+.++..+..+.......                            ..........+++|+++|..|++|-.|+
T Consensus       254 ~sIkIwdl~~~~~v~~l~~d~~g~----------------------------s~~~~~~~clslaws~dG~tLf~g~td~  305 (315)
T KOG0279|consen  254 TSIKIWDLESKAVVEELKLDGIGP----------------------------SSKAGDPICLSLAWSADGQTLFAGYTDN  305 (315)
T ss_pred             CceEEEeccchhhhhhcccccccc----------------------------ccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence            789999999999888776432210                            0012223378899999999999999999


Q ss_pred             cEEEEEeC
Q 010296          445 SVRLWAIE  452 (513)
Q Consensus       445 ~v~vwd~~  452 (513)
                      .|++|.+.
T Consensus       306 ~irv~qv~  313 (315)
T KOG0279|consen  306 VIRVWQVA  313 (315)
T ss_pred             cEEEEEee
Confidence            99999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-38  Score=283.77  Aligned_cols=306  Identities=17%  Similarity=0.271  Sum_probs=251.5

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI  223 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (513)
                      ..-++.+.-.++..|..-|+|+.|+|||.+++|++.||+|.+||=.+++.+..+.                ...+|.+.|
T Consensus       175 feGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~----------------~~~aHkGsI  238 (603)
T KOG0318|consen  175 FEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELE----------------DSDAHKGSI  238 (603)
T ss_pred             eeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEec----------------CCCCccccE
Confidence            3345556667788899999999999999999999999999999999999887661                135899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeee-------------------------------------------ccC
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA-------------------------------------------FPG  260 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------------------------------~~~  260 (513)
                      ++|+|+||+..|++++.|.+++|||+.+.+++.+                                           +.+
T Consensus       239 falsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G  318 (603)
T KOG0318|consen  239 FALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG  318 (603)
T ss_pred             EEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc
Confidence            9999999999999999999999999877654433                                           358


Q ss_pred             cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe-ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-
Q 010296          261 HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-  338 (513)
Q Consensus       261 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-  338 (513)
                      |...|+++..+|++++|++|+.||.|.-|+..++..-... .+|...|.+++.+..+.+++++.|.++++.++...... 
T Consensus       319 HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~  398 (603)
T KOG0318|consen  319 HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK  398 (603)
T ss_pred             cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccc
Confidence            9999999999999999999999999999999988765443 67999999999998899999999999999976422100 


Q ss_pred             -------------------------------EEe--------cCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCee
Q 010296          339 -------------------------------VFR--------APASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPV  378 (513)
Q Consensus       339 -------------------------------~~~--------~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~  378 (513)
                                                     .+.        .......+++++|++. +++|+.||.|+||.+......
T Consensus       399 ~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~  478 (603)
T KOG0318|consen  399 SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK  478 (603)
T ss_pred             cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc
Confidence                                           000        1123455778888886 678999999999998876543


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcce
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDI  458 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~  458 (513)
                      .....                                   ..|..+|+++++||++.+||+|...+.|.+||+.+...  
T Consensus       479 ee~~~-----------------------------------~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--  521 (603)
T KOG0318|consen  479 EEAKL-----------------------------------LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--  521 (603)
T ss_pred             ceeee-----------------------------------ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--
Confidence            33221                                   44556699999999999999999999999999998743  


Q ss_pred             eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296          459 QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       459 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                      ..-...-|...|++|+|+|+..++|+| +-|-.|.||++.+..+.
T Consensus       522 ~~~~w~FHtakI~~~aWsP~n~~vATG-SlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  522 KTNRWAFHTAKINCVAWSPNNKLVATG-SLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             ecceeeeeeeeEEEEEeCCCceEEEec-cccceEEEEEccChhhh
Confidence            333333389999999999999999999 99999999999887765

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-38  Score=260.58  Aligned_cols=290  Identities=21%  Similarity=0.318  Sum_probs=236.5

Q ss_pred             cchhhhhccCCCeEEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          150 DEFRVLLKHRQSVTAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ..++.+.+|++.|..++|+|- |..|||||.|+.|+||+...+......    .           ..-.+|...|.+++|
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck----~-----------vld~~hkrsVRsvAw   69 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCK----T-----------VLDDGHKRSVRSVAW   69 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEE----E-----------eccccchheeeeeee
Confidence            346778899999999999998 889999999999999999853221110    0           013479999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCc--ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC---CceeEEeecc
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQ--EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED---RAYISTLFGH  303 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~  303 (513)
                      +|.|++|++++.|.++.||.-..+  +++.++.+|...|.|++|+++|.+||+|+.|..|.||.+..   ..++..+..|
T Consensus        70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H  149 (312)
T KOG0645|consen   70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH  149 (312)
T ss_pred             cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence            999999999999999999986544  67899999999999999999999999999999999999874   3568889999


Q ss_pred             cCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCe----eeEEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCe
Q 010296          304 QSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEES----RLVFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       304 ~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~  377 (513)
                      ...|..+.|+|. +.|++++.|++|++|.-....    ...+.+|...|.+++|.+.| +|++++.|++++||.+.+.  
T Consensus       150 tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--  227 (312)
T KOG0645|consen  150 TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--  227 (312)
T ss_pred             cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--
Confidence            999999999995 567799999999999876322    34677888899999999988 6999999999999986522  


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC--C
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE--T  455 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~--~  455 (513)
                         +.                                    ..|...+..++|.  ...|++++.|+.|+||.-...  .
T Consensus       228 ---~~------------------------------------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~  266 (312)
T KOG0645|consen  228 ---LS------------------------------------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDE  266 (312)
T ss_pred             ---cc------------------------------------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCC
Confidence               11                                    3444559999998  448999999999999987653  1


Q ss_pred             cceeeee--ecCcccEEEEEEeecC-CCEEEEEecCCCcccccccC
Q 010296          456 KDIQPLY--NLPLVGFVNSLAFAKS-GQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       456 ~~~~~~~--~~~~~~~v~~v~~sp~-~~~l~~~~~~dg~v~~W~~~  498 (513)
                      ..+..+.  ...|...|++|+|.|. ...|+++ |+||.|++|.+.
T Consensus       267 p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~-~DDG~v~~W~l~  311 (312)
T KOG0645|consen  267 PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASG-GDDGIVNFWELE  311 (312)
T ss_pred             chHHHHHhhhcccccccceEEEcCCCCCceeec-CCCceEEEEEec
Confidence            1222221  2236778999999996 4566666 999999999764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.9e-40  Score=291.46  Aligned_cols=294  Identities=17%  Similarity=0.307  Sum_probs=247.2

Q ss_pred             cccchhhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCC-CccccccCCChhhhccCCCCCCCCCCCCCcccEEE
Q 010296          148 ATDEFRVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSS-GKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA  225 (513)
Q Consensus       148 ~~~~~~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (513)
                      +...++++.+|+..|+++.|.| .+.+|++|+.|+.|+||++.. +.++++                   +.+|..+|..
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vrd  263 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVRD  263 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhhh
Confidence            3456778999999999999999 889999999999999999987 666664                   4799999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeeccc
Q 010296          226 LAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQ  304 (513)
Q Consensus       226 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  304 (513)
                      ++|+++|..|++++.|+.|++||+++|+++..+. -...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-
T Consensus       264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL  342 (503)
T KOG0282|consen  264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL  342 (503)
T ss_pred             hhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh
Confidence            9999999999999999999999999999999987 45678999999998 778899999999999999999999999999


Q ss_pred             CCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEE--ecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEE
Q 010296          305 SEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVF--RAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       305 ~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~  380 (513)
                      +.|..+.|.+++ ++++.+.+++++||+.+....+.+  ........|+..+|++. +++-+.|+.|.||.+...-.+..
T Consensus       343 g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk  422 (503)
T KOG0282|consen  343 GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK  422 (503)
T ss_pred             hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH
Confidence            999999999987 788999999999999988776633  34445677899999987 66778999999998654322211


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP  460 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~  460 (513)
                      -+.                                +......++-..+.|||||.+|++|+.||.+.+||.++- +.+..
T Consensus       423 kK~--------------------------------feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~  469 (503)
T KOG0282|consen  423 KKR--------------------------------FEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSK  469 (503)
T ss_pred             hhh--------------------------------hcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhc
Confidence            110                                001223345788999999999999999999999999886 45555


Q ss_pred             eeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          461 LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       461 ~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      +..  |.+++..+.|+|...--++++|.+|.|++|+
T Consensus       470 lka--h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  470 LKA--HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ccc--CCcceEEEEecCCCcceeEecccCceeEecC
Confidence            554  7899999999998876665669999999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.5e-38  Score=263.30  Aligned_cols=252  Identities=23%  Similarity=0.374  Sum_probs=229.3

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-  294 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-  294 (513)
                      +.+|...|+++.|+++.++|++++.||.+.|||.-+...++.++-....|..++|+|.|+++++|+.|+...||++.+. 
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d  130 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD  130 (343)
T ss_pred             ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc
Confidence            4699999999999999999999999999999999999888888888999999999999999999999999999999865 


Q ss_pred             -----ceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeec-CC-eEEEEeCCCC
Q 010296          295 -----AYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFIS-ND-EFLSGSDDGS  366 (513)
Q Consensus       295 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~-~~-~~~~~~~dg~  366 (513)
                           +..+.+.+|.+.+.++.|.+++.+++++.|.++.+||+.+++.. .+.+|...|.++.++| ++ .|++|+-|+.
T Consensus       131 ~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~  210 (343)
T KOG0286|consen  131 AEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS  210 (343)
T ss_pred             ccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc
Confidence                 34567889999999999999999999999999999999998876 7889999999999999 55 4999999999


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV  446 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v  446 (513)
                      .+|||++.+.+.++|..+                                     ..-|++++|.|+|.-|++|+.|++.
T Consensus       211 aklWD~R~~~c~qtF~gh-------------------------------------esDINsv~ffP~G~afatGSDD~tc  253 (343)
T KOG0286|consen  211 AKLWDVRSGQCVQTFEGH-------------------------------------ESDINSVRFFPSGDAFATGSDDATC  253 (343)
T ss_pred             eeeeeccCcceeEeeccc-------------------------------------ccccceEEEccCCCeeeecCCCcee
Confidence            999999999999998544                                     3449999999999999999999999


Q ss_pred             EEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccceE
Q 010296          447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVL  506 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~  506 (513)
                      |+||++.. +.+..+.......+|++|+||..|++|++| ..|.++.+||..++++.+++
T Consensus       254 RlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfag-y~d~~c~vWDtlk~e~vg~L  311 (343)
T KOG0286|consen  254 RLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAG-YDDFTCNVWDTLKGERVGVL  311 (343)
T ss_pred             EEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEee-ecCCceeEeeccccceEEEe
Confidence            99999998 555555554557889999999999999999 89999999999999887776

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8e-39  Score=265.87  Aligned_cols=289  Identities=19%  Similarity=0.289  Sum_probs=241.2

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      .++..+.+|.+.|+.+.|+|+|.+|||||.|..|.+|++.......                  ..+.+|.++|..+.|.
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~   99 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGM   99 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeec
Confidence            4556788999999999999999999999999999999975433221                  1346999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      ++++.|++++.|.+|+.||+++|+.++.+++|..-|+++.-+.-|.. +.+++.|+++++||+++...++++. ...+++
T Consensus       100 ~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt  178 (338)
T KOG0265|consen  100 RDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT  178 (338)
T ss_pred             cCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence            99999999999999999999999999999999999999996555554 5588999999999999988888775 567899


Q ss_pred             EEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe----eEEe
Q 010296          309 TIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP----VYIV  381 (513)
Q Consensus       309 ~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~----~~~~  381 (513)
                      ++.|...+ .+++++-|+.|++||++.+... ...+|...|+.+..++.|. +++-+.|.++++||++...+    +..+
T Consensus       179 Av~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if  258 (338)
T KOG0265|consen  179 AVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF  258 (338)
T ss_pred             EEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe
Confidence            99998865 7889999999999999877655 7889999999999999996 67999999999999986543    3333


Q ss_pred             ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296          382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL  461 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~  461 (513)
                      ..+.                                 .........++|+|+++.+.+|+.|..+++||.... ..  .+
T Consensus       259 ~g~~---------------------------------hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r-~~--ly  302 (338)
T KOG0265|consen  259 QGHI---------------------------------HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR-RI--LY  302 (338)
T ss_pred             ecch---------------------------------hhhhhhcceeeccCCCCccccccccceEEEeecccc-cE--EE
Confidence            3211                                 111122667899999999999999999999999875 22  22


Q ss_pred             eecCcccEEEEEEeecCCCEEEEEecCCCcccc
Q 010296          462 YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGR  494 (513)
Q Consensus       462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~  494 (513)
                      ....|.+.|++++|+|...+|.++ +.|.+|.+
T Consensus       303 klpGh~gsvn~~~Fhp~e~iils~-~sdk~i~l  334 (338)
T KOG0265|consen  303 KLPGHYGSVNEVDFHPTEPIILSC-SSDKTIYL  334 (338)
T ss_pred             EcCCcceeEEEeeecCCCcEEEEe-ccCceeEe
Confidence            223489999999999999999999 88888765

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.7e-38  Score=277.97  Aligned_cols=277  Identities=19%  Similarity=0.329  Sum_probs=244.0

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      +..|++++|+.+|.+||+|+.||.++||+..... +.                   .+..|.++|.++.|+..|+||+++
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~-------------------tl~~HkgPI~slKWnk~G~yilS~  294 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS-------------------TLGQHKGPIFSLKWNKKGTYILSG  294 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCchh-hh-------------------hhhccCCceEEEEEcCCCCEEEec
Confidence            3679999999999999999999999999977543 33                   247899999999999999999999


Q ss_pred             eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeE
Q 010296          239 GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERV  318 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  318 (513)
                      +.|+++.+||..++...+.+.-|..+-..+.|-.+ ..+++++.|+.|+|+.+....++.++.+|.+.|.++.|.|.+.|
T Consensus       295 ~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~L  373 (524)
T KOG0273|consen  295 GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSL  373 (524)
T ss_pred             cCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCce
Confidence            99999999999999999999999988788899754 56899999999999999999999999999999999999998866


Q ss_pred             E-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCC----------eEEEEeCCCCEEEEecCCCCeeEEeecCCC
Q 010296          319 L-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISND----------EFLSGSDDGSIELWSLLRKKPVYIVKNAHP  386 (513)
Q Consensus       319 ~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~----------~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  386 (513)
                      + +++.|++++||++...... .+..|...|..+.|+|.|          .+++++.|++|++||+..+.++..+     
T Consensus       374 LaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-----  448 (524)
T KOG0273|consen  374 LASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-----  448 (524)
T ss_pred             EEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-----
Confidence            5 8999999999998665544 678888899999999854          2789999999999999999999998     


Q ss_pred             cccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCc
Q 010296          387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPL  466 (513)
Q Consensus       387 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~  466 (513)
                                                      ..|..+|.+++|+|+|+++|+|+.||.|.+|+++++    +.+..+..
T Consensus       449 --------------------------------~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~----~l~~s~~~  492 (524)
T KOG0273|consen  449 --------------------------------MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG----KLVKSYQG  492 (524)
T ss_pred             --------------------------------ccCCCceEEEEecCCCcEEEecCCCCeeEeccccch----heeEeecC
Confidence                                            445556999999999999999999999999999988    44555556


Q ss_pred             ccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          467 VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       467 ~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .+.|..|+|+.+|.+|.++ -.|+.+++-|+.
T Consensus       493 ~~~Ifel~Wn~~G~kl~~~-~sd~~vcvldlr  523 (524)
T KOG0273|consen  493 TGGIFELCWNAAGDKLGAC-ASDGSVCVLDLR  523 (524)
T ss_pred             CCeEEEEEEcCCCCEEEEE-ecCCCceEEEec
Confidence            7889999999999988888 778888876653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4e-40  Score=284.40  Aligned_cols=281  Identities=21%  Similarity=0.340  Sum_probs=242.0

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ..+|..|.|.|+|+.|+||+..|.+.+|+..+-....                   ....|..+|.++.|++++.++++|
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt-------------------ilQaHDs~Vr~m~ws~~g~wmiSg  156 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFET-------------------ILQAHDSPVRTMKWSHNGTWMISG  156 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHH-------------------HhhhhcccceeEEEccCCCEEEEc
Confidence            4589999999999999999999999999985433222                   246899999999999999999999


Q ss_pred             eCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC-C
Q 010296          239 GLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-E  316 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~  316 (513)
                      +.+|.|++|+..-.. +..+.+ |...|.+++|+|+...+++|+.||+|+|||....+.-..+.+|.-.|.+++|+|. +
T Consensus       157 D~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg  235 (464)
T KOG0284|consen  157 DKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG  235 (464)
T ss_pred             CCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc
Confidence            999999999976544 444444 5599999999999999999999999999999999888889999999999999995 6


Q ss_pred             eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296          317 RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF  394 (513)
Q Consensus       317 ~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
                      .+++++.|..|++||.+++.++ .+..|...|..+.|++++. |++++.|..+++||+++.+.++++..           
T Consensus       236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~-----------  304 (464)
T KOG0284|consen  236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG-----------  304 (464)
T ss_pred             eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc-----------
Confidence            7779999999999999999887 6778899999999999986 78999999999999998888877754           


Q ss_pred             ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEE
Q 010296          395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSL  473 (513)
Q Consensus       395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v  473 (513)
                                                |...|+++.|+| ...+|.+|+.||.|..|.+... .++.. ....|.+.|+++
T Consensus       305 --------------------------Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~~-i~~AHd~~iwsl  356 (464)
T KOG0284|consen  305 --------------------------HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLGE-IPPAHDGEIWSL  356 (464)
T ss_pred             --------------------------chhhheeeccccccccceeeccCCCceEEEecccc-ccccC-CCcccccceeee
Confidence                                      334499999999 4568999999999999999843 22222 223488999999


Q ss_pred             EeecCCCEEEEEecCCCcccccccCC
Q 010296          474 AFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       474 ~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      +|+|-|..|++| +.|.++++|....
T Consensus       357 ~~hPlGhil~tg-snd~t~rfw~r~r  381 (464)
T KOG0284|consen  357 AYHPLGHILATG-SNDRTVRFWTRNR  381 (464)
T ss_pred             eccccceeEeec-CCCcceeeeccCC
Confidence            999999999998 9999999997543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.1e-38  Score=298.15  Aligned_cols=299  Identities=22%  Similarity=0.346  Sum_probs=244.5

Q ss_pred             ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChh-------------hhccCCCCCCCCC
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEE-------------VLKSHGAKDPQGR  215 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~  215 (513)
                      ..++.++..-...++|..|++++.+||.|..|..|++|.+...+... +.....             .............
T Consensus       368 Sic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~-lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~  446 (707)
T KOG0263|consen  368 SICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK-LKDASDLSNIDTESADVDVDMLDDDSSGTSRT  446 (707)
T ss_pred             cEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhcc-ccchhhhccccccccchhhhhccccCCceeEE
Confidence            34455555556789999999999999999999999999998543211 110000             0000111222334


Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      +.+|.++|+.+.|+|+.++|++|+.|++|++|.+.+..++..+++|..+|+.+.|+|.|-|++|++.|++.++|......
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~  526 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK  526 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296          296 YISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL  372 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~  372 (513)
                      +++.+.+|.+.|.|+.|+|+. ++++|+.|.+|++||+.++..+ .+.+|..+|.+++|+|+|+ |++|+.||.|.|||+
T Consensus       527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl  606 (707)
T KOG0263|consen  527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL  606 (707)
T ss_pred             chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence            999999999999999999987 5558999999999999988776 7889999999999999997 779999999999999


Q ss_pred             CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                      .+++++..+..+                                     .+.|.++.||.+|..||+|+.|++|++||+.
T Consensus       607 ~~~~~v~~l~~H-------------------------------------t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  607 ANGSLVKQLKGH-------------------------------------TGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             CCCcchhhhhcc-------------------------------------cCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            999998887543                                     4449999999999999999999999999986


Q ss_pred             CCCcce-------e-------------eeeec-CcccEEEEEEeecCCCEEEEE
Q 010296          453 SETKDI-------Q-------------PLYNL-PLVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       453 ~~~~~~-------~-------------~~~~~-~~~~~v~~v~~sp~~~~l~~~  485 (513)
                      ......       .             .+..+ ....+|.+|.|...+..|++|
T Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  650 KVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             hhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence            542220       0             01111 134578888888776555554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1e-36  Score=280.68  Aligned_cols=285  Identities=29%  Similarity=0.488  Sum_probs=246.7

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      ++.+.+|.++|++++|+|++++|++++.+|.|++|++.++.....                   ...|...+..+.|+|+
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~   62 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD   62 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence            356789999999999999999999999999999999988765443                   2567788999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEE
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID  311 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  311 (513)
                      +++|++++.+|.|++|++.+++.+..+..|...|.++.|++++.++++++.++.|.+|++.+++.+..+..|...+.++.
T Consensus        63 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  142 (289)
T cd00200          63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA  142 (289)
T ss_pred             CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence            99999999999999999999888888888999999999999988888888899999999998888888888999999999


Q ss_pred             eeCCCeEEEEeC-CCcEEEEecCCCeee-EEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296          312 CLRKERVLTVGR-DRSMQLWKVPEESRL-VFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLL  388 (513)
Q Consensus       312 ~~~~~~~~~~~~-d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  388 (513)
                      |+|++.+++++. ++.|++||+...... .+..+...+.++.|+|++ .+++++.++.|++||+..++++..+..     
T Consensus       143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----  217 (289)
T cd00200         143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-----  217 (289)
T ss_pred             EcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh-----
Confidence            999887776555 999999999876654 555677789999999998 588888899999999998777666532     


Q ss_pred             cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCccc
Q 010296          389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG  468 (513)
Q Consensus       389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~  468 (513)
                                                      +...+.+++|+|++.++++++.+|.|++|++.++ .....+.  .|..
T Consensus       218 --------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~--~~~~  262 (289)
T cd00200         218 --------------------------------HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQTLS--GHTN  262 (289)
T ss_pred             --------------------------------cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEEcc--ccCC
Confidence                                            2234999999999999999988999999999876 3344444  3678


Q ss_pred             EEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          469 FVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      .|.+++|+|++++|+++ +.||.|++|+
T Consensus       263 ~i~~~~~~~~~~~l~~~-~~d~~i~iw~  289 (289)
T cd00200         263 SVTSLAWSPDGKRLASG-SADGTIRIWD  289 (289)
T ss_pred             cEEEEEECCCCCEEEEe-cCCCeEEecC
Confidence            89999999999999999 8999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.7e-37  Score=251.14  Aligned_cols=276  Identities=16%  Similarity=0.353  Sum_probs=230.6

Q ss_pred             ccccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCc
Q 010296          141 SRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQS  220 (513)
Q Consensus       141 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (513)
                      -++|......+.++++...+.|+.+.+.|++++||+++. ..|++||+.++...                 |...+.+|.
T Consensus        22 IRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-----------------Pv~t~e~h~   83 (311)
T KOG0315|consen   22 IRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-----------------PVATFEGHT   83 (311)
T ss_pred             eeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-----------------ceeEEeccC
Confidence            467899999999999988999999999999999999986 67999999987642                 334568999


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296          221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      ..|+++.|..+|+++++|+.||+++|||++...+.+.+. |..+|+++..+|+...|++|..+|.|++||+....+...+
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l  162 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL  162 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence            999999999999999999999999999999976666666 8899999999999999999999999999999998776655


Q ss_pred             ec-ccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-------EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEE
Q 010296          301 FG-HQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-------VFRAPASSLECCCFISNDE-FLSGSDDGSIELW  370 (513)
Q Consensus       301 ~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-------~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iw  370 (513)
                      .. ....|.++...|+|..+ ++...|++++|++......       .+..|...+..+.++|+++ |++++.|.+++||
T Consensus       163 iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw  242 (311)
T KOG0315|consen  163 IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW  242 (311)
T ss_pred             CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence            43 44578999999999666 5667899999999764322       5778899999999999997 7899999999999


Q ss_pred             ecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296          371 SLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW  449 (513)
Q Consensus       371 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw  449 (513)
                      +..+. +.-..+                                     .+|..|+..++||.+|.||+||+.|+.+++|
T Consensus       243 n~~~~~kle~~l-------------------------------------~gh~rWvWdc~FS~dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  243 NTDDFFKLELVL-------------------------------------TGHQRWVWDCAFSADGEYLVTASSDHTARLW  285 (311)
T ss_pred             ecCCceeeEEEe-------------------------------------ecCCceEEeeeeccCccEEEecCCCCceeec
Confidence            99887 222222                                     5677889999999999999999999999999


Q ss_pred             EeCCCCcceeeeeecCcccEEEEEEe
Q 010296          450 AIESETKDIQPLYNLPLVGFVNSLAF  475 (513)
Q Consensus       450 d~~~~~~~~~~~~~~~~~~~v~~v~~  475 (513)
                      ++..+ +.+.....  |.....|++.
T Consensus       286 ~~~~~-k~v~qy~g--h~K~~vc~~l  308 (311)
T KOG0315|consen  286 DLSAG-KEVRQYQG--HHKAAVCVAL  308 (311)
T ss_pred             ccccC-ceeeecCC--cccccEEEEe
Confidence            99988 33333322  4444455544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-38  Score=272.37  Aligned_cols=299  Identities=20%  Similarity=0.298  Sum_probs=247.0

Q ss_pred             CcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296          147 EATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL  226 (513)
Q Consensus       147 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (513)
                      .+.+..+++..|+..|.-+.||++|+|||+++.|.+..||.+.....+..                ..++.+|..+|..+
T Consensus       212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~yi  275 (519)
T KOG0293|consen  212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSYI  275 (519)
T ss_pred             CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEEE
Confidence            45567788999999999999999999999999999999999876554221                12457899999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc-c
Q 010296          227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH-Q  304 (513)
Q Consensus       227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~  304 (513)
                      .||||.++|++|+.+..+.+||+.+|.....+.. |...+.+++|.|||..+++|+.|++|..||+... .+....+. .
T Consensus       276 ~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~  354 (519)
T KOG0293|consen  276 MWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRD  354 (519)
T ss_pred             EECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhccccccc
Confidence            9999999999999999999999999998877763 4578999999999999999999999999999654 34344333 2


Q ss_pred             CCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEE-EEeCCCCEEEEecCCCCeeEEee
Q 010296          305 SEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       305 ~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      ..|.+++..+|| .+++.+.|..|++|+..+...........++++++.+.+++++ +.-.+..|++||+...+.+..+.
T Consensus       355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~  434 (519)
T KOG0293|consen  355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF  434 (519)
T ss_pred             ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence            468999999998 5568889999999999877666666777899999999999855 77789999999999777666655


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAIESETKDIQPL  461 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~~~~~~~~~~~  461 (513)
                      ++..                                   ...|..-||-. +..++++||.|+.|+||+..++ +++..+
T Consensus       435 Ghkq-----------------------------------~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~L  478 (519)
T KOG0293|consen  435 GHKQ-----------------------------------GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVL  478 (519)
T ss_pred             cccc-----------------------------------cceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEee
Confidence            4321                                   22255556654 4479999999999999999998 666666


Q ss_pred             eecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          462 YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      .+  |...|+||+|+|..+.+++++|+||+|+||...+.
T Consensus       479 sG--Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  479 SG--HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             cC--CcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            65  88999999999999877777699999999987654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-37  Score=247.28  Aligned_cols=287  Identities=21%  Similarity=0.308  Sum_probs=243.8

Q ss_pred             ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      .+.++.+..|.++|.++.|+-+|+|.+||+.|.+|++|+...+.+++++                   .+|...|..++.
T Consensus         7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-------------------sghG~EVlD~~~   67 (307)
T KOG0316|consen    7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-------------------SGHGHEVLDAAL   67 (307)
T ss_pred             chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-------------------cCCCceeeeccc
Confidence            4567788899999999999999999999999999999999999988865                   789999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC--ceeEEeecccCC
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR--AYISTLFGHQSE  306 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~  306 (513)
                      +.|+..|++|+.|..|.+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++.  ++++.+......
T Consensus        68 s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~  147 (307)
T KOG0316|consen   68 SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG  147 (307)
T ss_pred             cccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc
Confidence            999999999999999999999999999999999999999999999999999999999999999864  568888888888


Q ss_pred             eEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296          307 VLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       307 v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      |.++... ...+++++.||+++.||++.+... ......+|++++|++++. .++++-++++++.|-.+|+.+...+.+.
T Consensus       148 V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk  225 (307)
T KOG0316|consen  148 VSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK  225 (307)
T ss_pred             eeEEEec-ccEEEeeccCCcEEEEEeecceee-hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc
Confidence            9998875 456889999999999999988754 233456899999999997 6789999999999999999988876543


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP  465 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~  465 (513)
                      .                                   ..+-...+++.....+++|++||.|++||+... ..+..+..  
T Consensus       226 n-----------------------------------~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~-~~~sk~~~--  267 (307)
T KOG0316|consen  226 N-----------------------------------MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE-TQISKLSV--  267 (307)
T ss_pred             c-----------------------------------ceeeeeeeecccceeEEeccCCceEEEEEeccc-eeeeeecc--
Confidence            2                                   122456677777789999999999999999887 22222221  


Q ss_pred             cccE-EEEEEeecCCCEEEEEecCCCcccccc
Q 010296          466 LVGF-VNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       466 ~~~~-v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      +... |++++++|.-..+++++  ++.+.+|-
T Consensus       268 ~~~v~v~dl~~hp~~~~f~~A~--~~~~~~~~  297 (307)
T KOG0316|consen  268 VSTVIVTDLSCHPTMDDFITAT--GHGDLFWY  297 (307)
T ss_pred             CCceeEEeeecccCccceeEec--CCceecee
Confidence            3444 79999999988888773  34566773

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-36  Score=282.49  Aligned_cols=298  Identities=18%  Similarity=0.300  Sum_probs=249.6

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCC-ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKD-GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      ...+....++.+.--..+|..++|+..|.+||.|+.. |.+.||++++..-+..                   ..+|...
T Consensus       292 yelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK-------------------QQgH~~~  352 (893)
T KOG0291|consen  292 YELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK-------------------QQGHSDR  352 (893)
T ss_pred             EecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-------------------ccccccc
Confidence            4445556667776677899999999999999988754 8999999998765543                   3689999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      +++++++|||.++|+|+.||.|+|||..++-|+.+|..|+..|+.++|+..++.|++.+.||+|+.||+...+..+++..
T Consensus       353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~  432 (893)
T KOG0291|consen  353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS  432 (893)
T ss_pred             eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888864


Q ss_pred             c-cCCeEEEEeeCCCeEEEEe-CC-CcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCC-C
Q 010296          303 H-QSEVLTIDCLRKERVLTVG-RD-RSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRK-K  376 (513)
Q Consensus       303 ~-~~~v~~~~~~~~~~~~~~~-~d-~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~-~  376 (513)
                      . +....|++..|.|.+++++ .| =.|++|++.+++.+ .+.+|.++|.+++|+|.+. |+++++|.+|++||+-.. .
T Consensus       433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~  512 (893)
T KOG0291|consen  433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG  512 (893)
T ss_pred             CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc
Confidence            3 3356788888889888555 44 35999999999988 7889999999999999986 889999999999998654 3


Q ss_pred             eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCc
Q 010296          377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETK  456 (513)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~  456 (513)
                      .+.++...+.                                      +..++|+|+|+-|++++-||.|.+||+....+
T Consensus       513 ~vEtl~i~sd--------------------------------------vl~vsfrPdG~elaVaTldgqItf~d~~~~~q  554 (893)
T KOG0291|consen  513 TVETLEIRSD--------------------------------------VLAVSFRPDGKELAVATLDGQITFFDIKEAVQ  554 (893)
T ss_pred             eeeeEeeccc--------------------------------------eeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence            3444443332                                      99999999999999999999999999976521


Q ss_pred             ceeee------------------eecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          457 DIQPL------------------YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       457 ~~~~~------------------~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      . ..+                  .......+.+.+++|+||.+|++| |....|++|++..+
T Consensus       555 ~-~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg-G~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  555 V-GSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG-GESNSICIYDVPEG  614 (893)
T ss_pred             e-ccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec-CCcccEEEEECchh
Confidence            1 000                  000123578999999999999999 99999999987655

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3e-36  Score=290.26  Aligned_cols=289  Identities=26%  Similarity=0.404  Sum_probs=247.1

Q ss_pred             hhhhc-cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCc--cccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          153 RVLLK-HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK--GVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       153 ~~~~~-h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ..+.+ |...|+|+.|+|+|++|++++.++.+++|+..+..  ...                   .+.+|...|..++|+
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs  212 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFS  212 (456)
T ss_pred             eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEEC
Confidence            34434 48899999999999999999999999999996665  222                   236899999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeC-CCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          230 SDGRYLASGGLDRHIHLWDT-RIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      |++.++++++.|++|+|||+ ..+..++++.+|...|++++|+|.++++++|+.|++|+|||+++++++..+.+|...|.
T Consensus       213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is  292 (456)
T KOG0266|consen  213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS  292 (456)
T ss_pred             CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence            99999999999999999999 55688999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCeEE-EEeCCCcEEEEecCCCee--e-EEecCCC--CeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEe
Q 010296          309 TIDCLRKERVL-TVGRDRSMQLWKVPEESR--L-VFRAPAS--SLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       309 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~--~-~~~~~~~--~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                      +++|++++.++ +++.|+.|++||+.++..  . ....+..  .+.++.|+|++. +++++.|+.+++|++..+..+..+
T Consensus       293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence            99999988555 778899999999999883  2 3333333  589999999996 778999999999999999988887


Q ss_pred             ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296          382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL  461 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~  461 (513)
                      ..+...                                  ...+.+..+++.+.++++|+.|+.|++|++.++ ..++.+
T Consensus       373 ~~~~~~----------------------------------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l  417 (456)
T KOG0266|consen  373 TGHSNL----------------------------------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRL  417 (456)
T ss_pred             cccCCc----------------------------------ceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhh
Confidence            654321                                  012566667889999999999999999999986 444444


Q ss_pred             eecCc-ccEEEEEEeecCCCEEEEEec--CCCcccccccC
Q 010296          462 YNLPL-VGFVNSLAFAKSGQFLIAGVG--QEPRLGRWGHL  498 (513)
Q Consensus       462 ~~~~~-~~~v~~v~~sp~~~~l~~~~~--~dg~v~~W~~~  498 (513)
                      ..  | ...+..+.|+|...+++++ +  .|+.+++|...
T Consensus       418 ~~--h~~~~~~~~~~~~~~~~~~s~-s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  418 EG--HSKAAVSDLSSHPTENLIASS-SFEGDGLIRLWKYD  454 (456)
T ss_pred             cC--CCCCceeccccCCCcCeeeec-CcCCCceEEEecCC
Confidence            44  5 7889999999999999988 5  78999999653

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.6e-37  Score=286.85  Aligned_cols=243  Identities=23%  Similarity=0.446  Sum_probs=217.2

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-------------------------------eeeeccCcCCCeEEE
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE-------------------------------HIQAFPGHRGPVSCL  268 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-------------------------------~~~~~~~~~~~v~~~  268 (513)
                      ...++|..|++++.+||.|..|..|++|.+...+                               ...++.+|.++|...
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            4569999999999999999999999999976311                               123467899999999


Q ss_pred             EEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCC
Q 010296          269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASS  346 (513)
Q Consensus       269 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~  346 (513)
                      .|+|+.++|++++.|++|++|.+.+..++..+.+|..+|+.+.|+|.| +|++++.|++.++|........ .+.+|.+.
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD  537 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD  537 (707)
T ss_pred             eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc
Confidence            999999999999999999999999999999999999999999999988 5669999999999999876665 78899999


Q ss_pred             eeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296          347 LECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV  425 (513)
Q Consensus       347 v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  425 (513)
                      |.|+.|+|+.. +++|+.|.+|++||+.+|..++.+.                                     +|.++|
T Consensus       538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-------------------------------------GH~~~V  580 (707)
T KOG0263|consen  538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-------------------------------------GHKGPV  580 (707)
T ss_pred             cceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-------------------------------------CCCCce
Confidence            99999999986 7799999999999999999999884                                     455669


Q ss_pred             EEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296          426 SSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       426 ~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                      ++++|||+|++|++|+.||.|.|||+.++ ..+..+..  |.+.|.++.||.+|..||++ |.|.+|++||+......
T Consensus       581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~--Ht~ti~SlsFS~dg~vLasg-g~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  581 TALAFSPCGRYLASGDEDGLIKIWDLANG-SLVKQLKG--HTGTIYSLSFSRDGNVLASG-GADNSVRLWDLTKVIEL  654 (707)
T ss_pred             EEEEEcCCCceEeecccCCcEEEEEcCCC-cchhhhhc--ccCceeEEEEecCCCEEEec-CCCCeEEEEEchhhccc
Confidence            99999999999999999999999999998 45555555  79999999999999999999 99999999998766544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.4e-35  Score=303.63  Aligned_cols=292  Identities=15%  Similarity=0.194  Sum_probs=232.8

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCC
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGR  233 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~  233 (513)
                      +..|.+.|++++|+|++++||+|+.|++|+||++.........           ...+... ..+...|.+++|+| .+.
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~-----------~~~~~~~-~~~~~~v~~l~~~~~~~~  546 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD-----------IHYPVVE-LASRSKLSGICWNSYIKS  546 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc-----------cccceEE-ecccCceeeEEeccCCCC
Confidence            4458999999999999999999999999999998642110000           0000001 12345799999987 478


Q ss_pred             EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEe
Q 010296          234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDC  312 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  312 (513)
                      +|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||++++..+..+.. ...+.++.|
T Consensus       547 ~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~  625 (793)
T PLN00181        547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQF  625 (793)
T ss_pred             EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEE
Confidence            999999999999999999999999999999999999997 788999999999999999999988888774 467899999


Q ss_pred             eC-CC-eEEEEeCCCcEEEEecCCCee--eEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCC------CeeEEee
Q 010296          313 LR-KE-RVLTVGRDRSMQLWKVPEESR--LVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK------KPVYIVK  382 (513)
Q Consensus       313 ~~-~~-~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~------~~~~~~~  382 (513)
                      ++ ++ .+++++.|+.|++||++....  ..+..|...|.++.|.+...+++++.|++|+|||+..+      +++..+ 
T Consensus       626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-  704 (793)
T PLN00181        626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-  704 (793)
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-
Confidence            65 45 566899999999999987642  35678888999999987677999999999999998753      233333 


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee--
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP--  460 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~--  460 (513)
                                                          .+|...+.+++|+|++.+|++|+.||.|++|+..........  
T Consensus       705 ------------------------------------~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~  748 (793)
T PLN00181        705 ------------------------------------MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF  748 (793)
T ss_pred             ------------------------------------cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence                                                334455899999999999999999999999998654211100  


Q ss_pred             --------eeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          461 --------LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       461 --------~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                              +....+...|.+++|+|++.+|+++ +.+|.|++|++
T Consensus       749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~-~~dG~I~i~~~  792 (793)
T PLN00181        749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAA-NSTGNIKILEM  792 (793)
T ss_pred             ccCCcccccccCCCCcEEEEEEEcCCCCeEEEe-cCCCcEEEEec
Confidence                    0111245679999999999999999 88999999986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.8e-35  Score=262.52  Aligned_cols=332  Identities=17%  Similarity=0.230  Sum_probs=225.5

Q ss_pred             cccchhhhhccCCCeEEEEECCCCCe-EEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296          148 ATDEFRVLLKHRQSVTAVALSEDDSK-GFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL  226 (513)
Q Consensus       148 ~~~~~~~~~~h~~~V~~~~~s~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (513)
                      .....-.+.||...|++++|-|...+ ++||+.|++|.+|+=.-.+...                   ....|..-|.|+
T Consensus       136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~-------------------s~r~HskFV~~V  196 (603)
T KOG0318|consen  136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKS-------------------SFREHSKFVNCV  196 (603)
T ss_pred             CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeee-------------------cccccccceeeE
Confidence            34556678899999999999998764 7899999999999854333322                   357789999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc---CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc
Q 010296          227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP---GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH  303 (513)
Q Consensus       227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  303 (513)
                      .|+|||.+|++.+.||+|.+||-.+++.+..+.   +|.+.|.+++|+||++.+++++.|.+++|||+.+.+++.++...
T Consensus       197 RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~  276 (603)
T KOG0318|consen  197 RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG  276 (603)
T ss_pred             EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence            999999999999999999999999999999987   79999999999999999999999999999999888776665422


Q ss_pred             c---CCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCee
Q 010296          304 Q---SEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKPV  378 (513)
Q Consensus       304 ~---~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~  378 (513)
                      .   .....+.|. .+.|++.+.+|+|.+++....... .+.+|...|+++..++++ .|++|+.||.|.-|+..++..-
T Consensus       277 ~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  277 STVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             CchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence            1   122233333 445555555555555555544432 455555555555555554 5555555555555555443211


Q ss_pred             -----------EEeecCC-C------------------------------cccCCCCcccCcCccccccCCCCC-CC-CC
Q 010296          379 -----------YIVKNAH-P------------------------------LLDGLKNFEQDEGKISNGHSENGN-LN-PG  414 (513)
Q Consensus       379 -----------~~~~~~~-~------------------------------~~~~~~~~~~~~~~i~~~~~~~~~-~~-~~  414 (513)
                                 ..+.... .                              .++.......++....+.....-. +. ..
T Consensus       356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~  435 (603)
T KOG0318|consen  356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT  435 (603)
T ss_pred             ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence                       1111100 0                              000000000010000000000000 00 00


Q ss_pred             CcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccc
Q 010296          415 SYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGR  494 (513)
Q Consensus       415 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~  494 (513)
                      ............+++++|++..++.|+.||.|+||.+.... .........|.++|++|++|||+.|||++ ...+.|-+
T Consensus       436 ~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~-l~ee~~~~~h~a~iT~vaySpd~~yla~~-Da~rkvv~  513 (603)
T KOG0318|consen  436 KVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE-LKEEAKLLEHRAAITDVAYSPDGAYLAAG-DASRKVVL  513 (603)
T ss_pred             cceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCc-ccceeeeecccCCceEEEECCCCcEEEEe-ccCCcEEE
Confidence            00001122337899999999999999999999999998863 23334455699999999999999999999 88999999


Q ss_pred             cccCCCc
Q 010296          495 WGHLPAA  501 (513)
Q Consensus       495 W~~~~~~  501 (513)
                      |++....
T Consensus       514 yd~~s~~  520 (603)
T KOG0318|consen  514 YDVASRE  520 (603)
T ss_pred             EEcccCc
Confidence            9987654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.9e-37  Score=249.98  Aligned_cols=290  Identities=17%  Similarity=0.287  Sum_probs=257.0

Q ss_pred             hhhccCCCeEEEEECC---CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          154 VLLKHRQSVTAVALSE---DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      +-.+|+.+|..++|||   +|-+|++++.|+.-.+-+-+++.-+-++                   .+|.+.|++..+..
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-------------------eghkgavw~~~l~~   69 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-------------------EGHKGAVWSATLNK   69 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-------------------eccCcceeeeecCc
Confidence            4568999999999986   7889999999999888888887766644                   89999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc-eeEEeecccCCeEE
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA-YISTLFGHQSEVLT  309 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~  309 (513)
                      +....|+++.|-+.+|||.-+|..+..|. |..-|.+++|+.+.++|++|+.+..++|||++..+ +...+.+|.+.|..
T Consensus        70 na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~  148 (334)
T KOG0278|consen   70 NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRT  148 (334)
T ss_pred             hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCccee
Confidence            98899999999999999999999999987 99999999999999999999999999999998754 46678899999999


Q ss_pred             EEeeC-CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296          310 IDCLR-KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLL  388 (513)
Q Consensus       310 ~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  388 (513)
                      +.|.. +..+++.+.|++|++||.+++..+.......+|.++.++++|.+++....+.|.+||..+..++..++....  
T Consensus       149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~n--  226 (334)
T KOG0278|consen  149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCN--  226 (334)
T ss_pred             EEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccc--
Confidence            99976 557888899999999999999999888888999999999999999999999999999999988887764332  


Q ss_pred             cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCccc
Q 010296          389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG  468 (513)
Q Consensus       389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~  468 (513)
                                                          |.+..++|+..++++|+.|..++.||..++.. +... ...|.+
T Consensus       227 ------------------------------------V~SASL~P~k~~fVaGged~~~~kfDy~TgeE-i~~~-nkgh~g  268 (334)
T KOG0278|consen  227 ------------------------------------VESASLHPKKEFFVAGGEDFKVYKFDYNTGEE-IGSY-NKGHFG  268 (334)
T ss_pred             ------------------------------------cccccccCCCceEEecCcceEEEEEeccCCce-eeec-ccCCCC
Confidence                                                89999999999999999999999999999833 3332 235899


Q ss_pred             EEEEEEeecCCCEEEEEecCCCcccccccCCCcccc
Q 010296          469 FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNG  504 (513)
Q Consensus       469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~  504 (513)
                      +|.||.|+|+|...++| +.||+|+||-+.++...+
T Consensus       269 pVhcVrFSPdGE~yAsG-SEDGTirlWQt~~~~~~~  303 (334)
T KOG0278|consen  269 PVHCVRFSPDGELYASG-SEDGTIRLWQTTPGKTYG  303 (334)
T ss_pred             ceEEEEECCCCceeecc-CCCceEEEEEecCCCchh
Confidence            99999999999999999 999999999887765443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-36  Score=272.86  Aligned_cols=282  Identities=20%  Similarity=0.306  Sum_probs=249.0

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      .+.+..|+..|.++.|||..++++++-..|.|.||+.++...++.+                   .-..-+|.+..|-+-
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-------------------eV~~~PvRa~kfiaR   66 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-------------------EVSEVPVRAAKFIAR   66 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-------------------eecccchhhheeeec
Confidence            3456679999999999999999999999999999999999888765                   344667999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-ceeEEeecccCCeEEE
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-AYISTLFGHQSEVLTI  310 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~  310 (513)
                      .+++++|+.|..|+||+..+++.+..|..|...|.+++.+|.-.+++++|.|-+|++||.... .+.+++.+|..-|.++
T Consensus        67 knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv  146 (794)
T KOG0276|consen   67 KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV  146 (794)
T ss_pred             cceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999865 6788999999999999


Q ss_pred             EeeCC--CeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCC---eEEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296          311 DCLRK--ERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISND---EFLSGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       311 ~~~~~--~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~---~~~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                      +|+|.  +.|++++-|++|++|.+....+. ++.+|...|.|+.+.+.|   .+++|+.|.+|+|||..+..++.++..+
T Consensus       147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH  226 (794)
T KOG0276|consen  147 AFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH  226 (794)
T ss_pred             EecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc
Confidence            99994  48999999999999999876654 788999999999999988   6999999999999999999999998643


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL  464 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~  464 (513)
                                                           ...|..++|+|.-.++++|+.||+||||+..+- +.-..+.- 
T Consensus       227 -------------------------------------t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~-  267 (794)
T KOG0276|consen  227 -------------------------------------TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY-  267 (794)
T ss_pred             -------------------------------------cccceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhhc-
Confidence                                                 333999999999999999999999999998775 22222221 


Q ss_pred             CcccEEEEEEeecCCCEEEEEecCCCccc
Q 010296          465 PLVGFVNSLAFAKSGQFLIAGVGQEPRLG  493 (513)
Q Consensus       465 ~~~~~v~~v~~sp~~~~l~~~~~~dg~v~  493 (513)
                       ..+.|+||+-.+.+..+++| .+.|.|.
T Consensus       268 -gleRvW~I~~~k~~~~i~vG-~Deg~i~  294 (794)
T KOG0276|consen  268 -GLERVWCIAAHKGDGKIAVG-FDEGSVT  294 (794)
T ss_pred             -CCceEEEEeecCCCCeEEEe-ccCCcEE
Confidence             46789999999988888888 6777664

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.8e-35  Score=271.64  Aligned_cols=343  Identities=18%  Similarity=0.231  Sum_probs=273.1

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccc--c------------ccCCChhhhccCCC-CCCCCCC
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGV--K------------YLWPSEEVLKSHGA-KDPQGRA  216 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~--~------------~~~~~~~~~~~~~~-~~~~~~~  216 (513)
                      ...+.+|++.|.++-|..+...|+|.+.||.+.+|.+...-..  .            .....++....... .....-+
T Consensus       182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l  261 (893)
T KOG0291|consen  182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL  261 (893)
T ss_pred             eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence            5678899999999999999999999999999999998722100  0            00000000000000 0001112


Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCc
Q 010296          217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRA  295 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~  295 (513)
                      ......|++.+|++..+.||+|-..|.+.+|.+..-.+++.+.-...+|..++|+..|..|+.|+. -|.+.||+..+..
T Consensus       262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs  341 (893)
T KOG0291|consen  262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES  341 (893)
T ss_pred             cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence            223377999999999999999999999999999999999999888889999999999999998776 4899999999999


Q ss_pred             eeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296          296 YISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL  372 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~  372 (513)
                      .+....+|...+.+++++|||.++ +|+.||.|++||...+-+. ++..|.+.|+.+.|+..|+ +++.+-||+|+.||+
T Consensus       342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl  421 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL  421 (893)
T ss_pred             eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence            999999999999999999999655 8889999999999988776 8889999999999999987 779999999999999


Q ss_pred             CCCCeeEEeecCCCcccCCCCcccCcCcc----------ccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC
Q 010296          373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKI----------SNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG  442 (513)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  442 (513)
                      ...+..+++....+..-...+..+.+..+          .+|....|++.-.   ..+|.++|.+++|+|.+..|++||+
T Consensus       422 kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi---LsGHEgPVs~l~f~~~~~~LaS~SW  498 (893)
T KOG0291|consen  422 KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI---LSGHEGPVSGLSFSPDGSLLASGSW  498 (893)
T ss_pred             cccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh---hcCCCCcceeeEEccccCeEEeccc
Confidence            99999999887776654444444444333          3333334433222   2789999999999999999999999


Q ss_pred             CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          443 NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       443 dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      |.+||+|++-.......++   .+...+..++|+|+|+-|+++ .-||.|.+||...+.
T Consensus       499 DkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVa-TldgqItf~d~~~~~  553 (893)
T KOG0291|consen  499 DKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVA-TLDGQITFFDIKEAV  553 (893)
T ss_pred             cceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEE-EecceEEEEEhhhce
Confidence            9999999997764334433   366779999999999999999 899999999976554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.3e-37  Score=264.30  Aligned_cols=257  Identities=21%  Similarity=0.343  Sum_probs=225.6

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|.......-..+++|..+|.++.|++++.++++|..+|.|++|+..-......                   ...|...
T Consensus       122 LWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~-------------------~ahh~ea  182 (464)
T KOG0284|consen  122 LWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII-------------------QAHHAEA  182 (464)
T ss_pred             EecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh-------------------hHhhhhh
Confidence            455544455567889999999999999999999999999999999765443321                   2456689


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      |++++|+|+...|++++.||+|+|||....+.-..+.+|.-.|.++.|+|....|++++.|..|++||.+++.++.++.+
T Consensus       183 IRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~  262 (464)
T KOG0284|consen  183 IRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG  262 (464)
T ss_pred             hheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh
Confidence            99999999999999999999999999998888888999999999999999999999999999999999999999999999


Q ss_pred             ccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCee
Q 010296          303 HQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKKPV  378 (513)
Q Consensus       303 ~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~  378 (513)
                      |...|..+.|++++ .|++++.|..+++||+++.+.+ .+++|...++++.|+|-.  .|.+|+.||.|..|.+...+++
T Consensus       263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~  342 (464)
T KOG0284|consen  263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL  342 (464)
T ss_pred             ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc
Confidence            99999999999987 5559999999999999965544 788899999999999965  4789999999999999877777


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      ..+.                                    .+|...|++++|+|=|.+|++|+.|.++++|.-...
T Consensus       343 ~~i~------------------------------------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  343 GEIP------------------------------------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             cCCC------------------------------------cccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence            7666                                    444555999999999999999999999999986544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.3e-36  Score=257.54  Aligned_cols=275  Identities=22%  Similarity=0.397  Sum_probs=230.7

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      ....|+|+.+.  ...+++|..|++|+|||..+..++..+                   .+|++.|.|+.|.  .+.|++
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-------------------~GHtGSVLCLqyd--~rviis  252 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-------------------TGHTGSVLCLQYD--ERVIVS  252 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-------------------hcCCCcEEeeecc--ceEEEe
Confidence            45789999994  457999999999999999988877754                   7999999999996  569999


Q ss_pred             EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc---eeEEeecccCCeEEEEeeC
Q 010296          238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA---YISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~  314 (513)
                      |+.|.+|+|||+++++++.++-.|...|..+.|+.  .++++++.|.+|.+||+....   +.+.+.+|...|+.+.|..
T Consensus       253 GSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~  330 (499)
T KOG0281|consen  253 GSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  330 (499)
T ss_pred             cCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence            99999999999999999999999999999999974  589999999999999998764   3456789999999999964


Q ss_pred             CCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296          315 KERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK  392 (513)
Q Consensus       315 ~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  392 (513)
                      . .+++++.|.+|++|++.+...+ ++.+|...|.|+.+  .++ +++|++|.+|++||+..|+++..++.+..      
T Consensus       331 k-yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe------  401 (499)
T KOG0281|consen  331 K-YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE------  401 (499)
T ss_pred             c-eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH------
Confidence            4 7789999999999999998877 67788888887765  344 67999999999999999999998865443      


Q ss_pred             CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcce------eeeeecCc
Q 010296          393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDI------QPLYNLPL  466 (513)
Q Consensus       393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~------~~~~~~~~  466 (513)
                                                     -|.++.|.  .+.+++|+.||+|+|||+..+..+.      .......|
T Consensus       402 -------------------------------LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h  448 (499)
T KOG0281|consen  402 -------------------------------LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH  448 (499)
T ss_pred             -------------------------------hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc
Confidence                                           39999995  5689999999999999998874332      22233357


Q ss_pred             ccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          467 VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       467 ~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      .+.|..+.|.  ...++++ +.|.+|.+||...+..
T Consensus       449 sgRVFrLQFD--~fqIvss-sHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  449 SGRVFRLQFD--EFQIISS-SHDDTILIWDFLNGPP  481 (499)
T ss_pred             cceeEEEeec--ceEEEec-cCCCeEEEEEcCCCCc
Confidence            8999999994  4556666 7788999999876543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-34  Score=254.03  Aligned_cols=281  Identities=16%  Similarity=0.246  Sum_probs=225.3

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC-EE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR-YL  235 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l  235 (513)
                      ...++|++|.|+|....|++|+.|++++||.+........                 ..+.-...+|.+.+|+|+|. .+
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~l-----------------qS~~l~~fPi~~a~f~p~G~~~i  273 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKL-----------------QSIHLEKFPIQKAEFAPNGHSVI  273 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhh-----------------eeeeeccCccceeeecCCCceEE
Confidence            3468999999999999999999999999999986543321                 12234467899999999999 88


Q ss_pred             EEEeCCCcEEEEeCCCcceee--eccCcC-CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEe
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQ--AFPGHR-GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDC  312 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  312 (513)
                      ++++....++.||+.+.+...  .+.++. ..+.....++++++|+..+..|.|.+....+++.+..++ ..+.|..++|
T Consensus       274 ~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~f  352 (514)
T KOG2055|consen  274 FTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTF  352 (514)
T ss_pred             EecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEE
Confidence            999999999999999887543  333333 356778889999999999999999999999999999887 7788999999


Q ss_pred             eCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCC--eeEEEeecCCe-EEEEeCCCCEEEEecCC------CCeeEEee
Q 010296          313 LRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASS--LECCCFISNDE-FLSGSDDGSIELWSLLR------KKPVYIVK  382 (513)
Q Consensus       313 ~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~-~~~~~~dg~i~iwd~~~------~~~~~~~~  382 (513)
                      +.++ .+++++.+|.|++||++...++......+.  -+++|.++++. |++|+..|.|.|||..+      .+|+..+.
T Consensus       353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d  432 (514)
T KOG2055|consen  353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD  432 (514)
T ss_pred             ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence            9988 456888899999999999987754444444  35677778885 78999999999999654      34444443


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec--CCCcEEEEEeCCCCcceee
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA--GNGSVRLWAIESETKDIQP  460 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~--~dg~v~vwd~~~~~~~~~~  460 (513)
                      +..                                     ..|++|.|+|++++||.+|  ....+|+-.+.+.    ..
T Consensus       433 NLt-------------------------------------t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~----TV  471 (514)
T KOG2055|consen  433 NLT-------------------------------------TAITSLQFNHDAQILAIASRVKKNALRLVHVPSC----TV  471 (514)
T ss_pred             hhh-------------------------------------eeeeeeeeCcchhhhhhhhhccccceEEEeccce----ee
Confidence            222                                     2399999999999999887  4578999999876    33


Q ss_pred             eeecC----cccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          461 LYNLP----LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       461 ~~~~~----~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      +..+|    .-+.|+|++|||.|.+||+| ...|+|.+|.+
T Consensus       472 FsNfP~~n~~vg~vtc~aFSP~sG~lAvG-Ne~grv~l~kL  511 (514)
T KOG2055|consen  472 FSNFPTSNTKVGHVTCMAFSPNSGYLAVG-NEAGRVHLFKL  511 (514)
T ss_pred             eccCCCCCCcccceEEEEecCCCceEEee-cCCCceeeEee
Confidence            33333    35679999999999999999 99999999975

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.8e-35  Score=271.21  Aligned_cols=339  Identities=19%  Similarity=0.279  Sum_probs=258.7

Q ss_pred             EeeccccCCCcccchhhhhc-cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCC
Q 010296          138 VIASRVQKPEATDEFRVLLK-HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRA  216 (513)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (513)
                      ...-++|..+....++.++. |++||.-++|+|.+..|++|+.|+.|+|||+..+.+.+.+                   
T Consensus        83 s~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-------------------  143 (775)
T KOG0319|consen   83 SQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-------------------  143 (775)
T ss_pred             cceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-------------------
Confidence            34556788888899999998 9999999999999999999999999999999999988865                   


Q ss_pred             CCCcccEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCcce-eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 010296          217 TKQSKHILALAVSSDGR--YLASGGLDRHIHLWDTRIQEH-IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED  293 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  293 (513)
                      .+|.+.|.++.|+|+-+  .|++|..|+.+++||+.+... +..+..|.+.|++++|++++..+++++.|..+.|||+.+
T Consensus       144 kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~  223 (775)
T KOG0319|consen  144 KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ  223 (775)
T ss_pred             cCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh
Confidence            89999999999999755  588999999999999996654 888899999999999999999999999999999998732


Q ss_pred             CceeEEe-------------------------------------------------------------------------
Q 010296          294 RAYISTL-------------------------------------------------------------------------  300 (513)
Q Consensus       294 ~~~~~~~-------------------------------------------------------------------------  300 (513)
                      .+...++                                                                         
T Consensus       224 ~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQ  303 (775)
T KOG0319|consen  224 YKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQ  303 (775)
T ss_pred             hhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccc
Confidence            2111100                                                                         


Q ss_pred             ----------------ecccCCeEEEEeeC--CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-eEEEE
Q 010296          301 ----------------FGHQSEVLTIDCLR--KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND-EFLSG  361 (513)
Q Consensus       301 ----------------~~~~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~  361 (513)
                                      .+....|..+.|..  +..+++++..+.+++|++.+..+..+.+|...|.++.....| .|++|
T Consensus       304 nl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~  383 (775)
T KOG0319|consen  304 NLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATG  383 (775)
T ss_pred             eEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEe
Confidence                            12233444555433  235678888899999999988888999999999999966666 68899


Q ss_pred             eCCCCEEEEecCCCCe----eEEeecCCCcccCCCCcccCcCccccccCCCCCC----------------CCCCcCCCCC
Q 010296          362 SDDGSIELWSLLRKKP----VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNL----------------NPGSYHSSSA  421 (513)
Q Consensus       362 ~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~~~~~~~~~~  421 (513)
                      +.|.++++|.+..+..    +... ..|........+......+.+..+....+                ....+....|
T Consensus       384 sKD~svilWr~~~~~~~~~~~a~~-~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH  462 (775)
T KOG0319|consen  384 SKDKSVILWRLNNNCSKSLCVAQA-NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH  462 (775)
T ss_pred             cCCceEEEEEecCCcchhhhhhhh-cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence            9999999998844322    1111 22222222222222222222111111111                1112234567


Q ss_pred             cceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          422 YSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       422 ~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      ..-|++++++|+.++|||||.|.+.+||++... .....+..  |...|.+|.|+|..+.|+++ +.|++|+||.....
T Consensus       463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsG--H~RGvw~V~Fs~~dq~laT~-SgD~TvKIW~is~f  537 (775)
T KOG0319|consen  463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSG--HTRGVWCVSFSKNDQLLATC-SGDKTVKIWSISTF  537 (775)
T ss_pred             cccccceEecCCCceEEecccccceeeecccCc-eEEEEeeC--CccceEEEEeccccceeEec-cCCceEEEEEeccc
Confidence            888999999999999999999999999999955 44555554  89999999999999999999 89999999987653

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.7e-35  Score=250.38  Aligned_cols=254  Identities=14%  Similarity=0.249  Sum_probs=216.1

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|.......+..+.+|+..|+|+.|+.+|.+||||+.+|.|+||...++.....+                   ......
T Consensus        90 lW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~-------------------~~e~~d  150 (399)
T KOG0296|consen   90 LWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL-------------------DQEVED  150 (399)
T ss_pred             EEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe-------------------ecccCc
Confidence            4556666678889999999999999999999999999999999999999877654                   234556


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      |.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..++++-.|.|+|++++++..||+|++|++.+++++..+..
T Consensus       151 ieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~  230 (399)
T KOG0296|consen  151 IEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQ  230 (399)
T ss_pred             eEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecc
Confidence            88899999999999999999999999999888999999999999999999999999999999999999999988766541


Q ss_pred             c---------------------------------------------------cCCeEEEEeeCC---Ce-EEEEeCCCcE
Q 010296          303 H---------------------------------------------------QSEVLTIDCLRK---ER-VLTVGRDRSM  327 (513)
Q Consensus       303 ~---------------------------------------------------~~~v~~~~~~~~---~~-~~~~~~d~~i  327 (513)
                      .                                                   ...+.++.+.|-   =. .++++.||+|
T Consensus       231 ~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i  310 (399)
T KOG0296|consen  231 AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTI  310 (399)
T ss_pred             cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceE
Confidence            0                                                   001111122221   11 3467789999


Q ss_pred             EEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCC
Q 010296          328 QLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSE  407 (513)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  407 (513)
                      .|||+..........|..+|..+.|.+...+++++.+|.|++||.++|+.+.++                          
T Consensus       311 ~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y--------------------------  364 (399)
T KOG0296|consen  311 AIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTY--------------------------  364 (399)
T ss_pred             EEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEE--------------------------
Confidence            999999888888888999999999999667999999999999999999999888                          


Q ss_pred             CCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          408 NGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       408 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                                 .+|...|.+++++|++++++|+|.|++.+||++.
T Consensus       365 -----------~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  365 -----------TGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             -----------ecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence                       4555669999999999999999999999999864

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=9.4e-36  Score=257.88  Aligned_cols=297  Identities=20%  Similarity=0.288  Sum_probs=249.2

Q ss_pred             CCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE
Q 010296          145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL  224 (513)
Q Consensus       145 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  224 (513)
                      +.-+......+..|.+.|..+.|-++...|+||+.|..|++|++...+...                 ...+.+..++|+
T Consensus       161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~it  223 (459)
T KOG0288|consen  161 DTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNIT  223 (459)
T ss_pred             cccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCcc
Confidence            334556677888999999999999999999999999999999998776221                 113467788899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeeccc
Q 010296          225 ALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQ  304 (513)
Q Consensus       225 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  304 (513)
                      ++.|.++++++++++.|+.+++|++...+...++.+|+..|+++.|......+++|+.|.+|++||+....|..++. ..
T Consensus       224 ~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~  302 (459)
T KOG0288|consen  224 SIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PG  302 (459)
T ss_pred             eeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-cc
Confidence            99999999999999999999999999999999999999999999998877779999999999999999988887765 34


Q ss_pred             CCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          305 SEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       305 ~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      ..+..|.+. ...++++..|++|++||+++..........+.|+++..++++. +++++.|.++.++|+++......+..
T Consensus       303 S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA  381 (459)
T KOG0288|consen  303 SQCNDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA  381 (459)
T ss_pred             ccccceEec-ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence            455666654 4456788899999999999998887777777999999999996 88889999999999999988877753


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                      ..-                                 ....-.+.+.|||++.|+++||.||.|+||++.++ +.-..+..
T Consensus       382 ~g~---------------------------------k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~  427 (459)
T KOG0288|consen  382 EGF---------------------------------KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSL  427 (459)
T ss_pred             ccc---------------------------------ccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEecc
Confidence            221                                 11112889999999999999999999999999998 33333333


Q ss_pred             cCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W  495 (513)
                      ......|++++|+|.|.+|+++ +.++.+.+|
T Consensus       428 s~s~~aI~s~~W~~sG~~Llsa-dk~~~v~lW  458 (459)
T KOG0288|consen  428 STSNAAITSLSWNPSGSGLLSA-DKQKAVTLW  458 (459)
T ss_pred             CCCCcceEEEEEcCCCchhhcc-cCCcceEec
Confidence            2223379999999999999999 999999999

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.9e-35  Score=273.84  Aligned_cols=287  Identities=20%  Similarity=0.338  Sum_probs=247.6

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY  234 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  234 (513)
                      +..-+..|..++|+|...+++++-..|.|++||..-+.++..+                   ..|.++|..++|+|.+.+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-------------------deHdGpVRgv~FH~~qpl   65 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-------------------DEHDGPVRGVDFHPTQPL   65 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-------------------hccCCccceeeecCCCCe
Confidence            4456788999999999999999999999999999999988755                   789999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296          235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  314 (513)
                      |++|+.|..|+||+..+.+++.++.+|-..|..+.|++.-.+++++|.|.+|+||+..+++++..+.+|..-|.|..|+|
T Consensus        66 FVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp  145 (1202)
T KOG0292|consen   66 FVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP  145 (1202)
T ss_pred             EEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -CCeEEEEeCCCcEEEEecCCCe------------------------------eeEEecCCCCeeEEEeecCC-eEEEEe
Q 010296          315 -KERVLTVGRDRSMQLWKVPEES------------------------------RLVFRAPASSLECCCFISND-EFLSGS  362 (513)
Q Consensus       315 -~~~~~~~~~d~~i~iwd~~~~~------------------------------~~~~~~~~~~v~~~~~~~~~-~~~~~~  362 (513)
                       ...+++++-|.+|++||+..-+                              ...+.+|...|..++|+|.- .+++|+
T Consensus       146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~  225 (1202)
T KOG0292|consen  146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA  225 (1202)
T ss_pred             ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence             4577799999999999985311                              01356788899999999976 478999


Q ss_pred             CCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC
Q 010296          363 DDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG  442 (513)
Q Consensus       363 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  442 (513)
                      .|..|++|.+...+.=.. ..                                  -.+|...|+++-|+|...++++.|.
T Consensus       226 DDRqVKlWrmnetKaWEv-Dt----------------------------------crgH~nnVssvlfhp~q~lIlSnsE  270 (1202)
T KOG0292|consen  226 DDRQVKLWRMNETKAWEV-DT----------------------------------CRGHYNNVSSVLFHPHQDLILSNSE  270 (1202)
T ss_pred             CcceeeEEEeccccceee-hh----------------------------------hhcccCCcceEEecCccceeEecCC
Confidence            999999999876442111 10                                  0566677999999999999999999


Q ss_pred             CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          443 NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       443 dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      |++|+|||+... ..++.+..  ..+..+.++-+|..+++++|  .|+.+.++.+...
T Consensus       271 DksirVwDm~kR-t~v~tfrr--endRFW~laahP~lNLfAAg--HDsGm~VFkleRE  323 (1202)
T KOG0292|consen  271 DKSIRVWDMTKR-TSVQTFRR--ENDRFWILAAHPELNLFAAG--HDSGMIVFKLERE  323 (1202)
T ss_pred             CccEEEEecccc-cceeeeec--cCCeEEEEEecCCcceeeee--cCCceEEEEEccc
Confidence            999999999887 45555554  46789999999999988776  4555667876654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.7e-34  Score=245.45  Aligned_cols=283  Identities=23%  Similarity=0.390  Sum_probs=235.3

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC---C
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG---R  233 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~  233 (513)
                      .|.+.|.++...  +++++||+.||.++||+..... ...                   ..+|.++|.+++|....   .
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~~-------------------~~Ght~~ik~v~~v~~n~~~~  160 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IKT-------------------IVGHTGPIKSVAWVIKNSSSC  160 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCce-EEE-------------------EecCCcceeeeEEEecCCccc
Confidence            489999999988  7899999999999999987544 332                   36999999988886543   3


Q ss_pred             EEEEEeCCCcEEEEeCCCcce----eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC-----------------
Q 010296          234 YLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE-----------------  292 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-----------------  292 (513)
                      .|++++.|.++++|.++.+..    +..-.+|...|-++...+++..+++|+.|.+|.||+..                 
T Consensus       161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~  240 (423)
T KOG0313|consen  161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK  240 (423)
T ss_pred             eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence            599999999999999887653    33445899999999999999999999999999999931                 


Q ss_pred             --------CCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeC
Q 010296          293 --------DRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSD  363 (513)
Q Consensus       293 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~  363 (513)
                              ++.++..+.+|..+|.++.|++.+.+++++.|.+|+.||+.++...........+.|+..+|... +++|+.
T Consensus       241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss  320 (423)
T KOG0313|consen  241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS  320 (423)
T ss_pred             hhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCC
Confidence                    12356678899999999999998899999999999999999999988778888999999999775 779999


Q ss_pred             CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecC
Q 010296          364 DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAG  442 (513)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~  442 (513)
                      |..|++||.+++.-.....                                  ...+|..+|.++.|+|.. ..|++|+.
T Consensus       321 dr~irl~DPR~~~gs~v~~----------------------------------s~~gH~nwVssvkwsp~~~~~~~S~S~  366 (423)
T KOG0313|consen  321 DRHIRLWDPRTGDGSVVSQ----------------------------------SLIGHKNWVSSVKWSPTNEFQLVSGSY  366 (423)
T ss_pred             CCceeecCCCCCCCceeEE----------------------------------eeecchhhhhheecCCCCceEEEEEec
Confidence            9999999998863211111                                  016777889999999965 57889999


Q ss_pred             CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          443 NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       443 dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      ||++++||+++...++-.+..  |...|.++.|+ .+.+|++| |.|.+|+++...+
T Consensus       367 D~t~klWDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSG-GaD~~l~i~~~~~  419 (423)
T KOG0313|consen  367 DNTVKLWDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSG-GADNKLRIFKGSP  419 (423)
T ss_pred             CCeEEEEEeccCCCcceeecc--CCceEEEEecc-CCceEEec-cCcceEEEecccc
Confidence            999999999998545555544  88999999997 45678888 9999999986544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.1e-35  Score=248.17  Aligned_cols=253  Identities=20%  Similarity=0.308  Sum_probs=229.6

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC-ccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG-KGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      +|+....+..+.++||++.|..|+|+..|++|++++.|-.+++||..+. .+++                   ...+|..
T Consensus       134 v~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k-------------------s~~gh~h  194 (406)
T KOG0295|consen  134 VFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK-------------------SLIGHEH  194 (406)
T ss_pred             EEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH-------------------HhcCccc
Confidence            4666778889999999999999999999999999999999999999863 3333                   2468899


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      .|.+++|-|.|.++++++.|.+|+.|++.++.++.+|.+|...|..+..+.||..+++++.|.+|++|-+.++++...+.
T Consensus       195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR  274 (406)
T KOG0295|consen  195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR  274 (406)
T ss_pred             ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCeEEEEeeCC----------C------eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeC
Q 010296          302 GHQSEVLTIDCLRK----------E------RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSD  363 (513)
Q Consensus       302 ~~~~~v~~~~~~~~----------~------~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~  363 (513)
                      .|.-+|-+++|.|.          +      .+.+++.|++|++||+.++.++ .+.+|...|..++|+|.|+ |+++..
T Consensus       275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD  354 (406)
T KOG0295|consen  275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD  354 (406)
T ss_pred             ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec
Confidence            99999999999762          1      3558899999999999999877 7889999999999999997 669999


Q ss_pred             CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC
Q 010296          364 DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN  443 (513)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  443 (513)
                      |+++++||+++++++.++.                                     .|...++++.|..+..+++||+-|
T Consensus       355 Dktlrvwdl~~~~cmk~~~-------------------------------------ah~hfvt~lDfh~~~p~VvTGsVd  397 (406)
T KOG0295|consen  355 DKTLRVWDLKNLQCMKTLE-------------------------------------AHEHFVTSLDFHKTAPYVVTGSVD  397 (406)
T ss_pred             CCcEEEEEeccceeeeccC-------------------------------------CCcceeEEEecCCCCceEEecccc
Confidence            9999999999999998885                                     333449999999999999999999


Q ss_pred             CcEEEEEe
Q 010296          444 GSVRLWAI  451 (513)
Q Consensus       444 g~v~vwd~  451 (513)
                      ..+++|..
T Consensus       398 qt~KvwEc  405 (406)
T KOG0295|consen  398 QTVKVWEC  405 (406)
T ss_pred             ceeeeeec
Confidence            99999974

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.5e-35  Score=245.12  Aligned_cols=290  Identities=20%  Similarity=0.295  Sum_probs=243.0

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      +..+.+-|..|+|||+||++|+.||.|-||++.+|+..+-+.           ...+..+--+..+|.|+.||.|...||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-----------YQAqd~fMMmd~aVlci~FSRDsEMlA  279 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-----------YQAQDNFMMMDDAVLCISFSRDSEMLA  279 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-----------hhhhcceeecccceEEEeecccHHHhh
Confidence            456779999999999999999999999999999998765331           011113345778999999999999999


Q ss_pred             EEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  315 (513)
                      +|+.||.|+||.+.+|.+++.|. .|+..|+|+.|+.++..+++++.|.++++.-+.+|+++..+.+|...|+...|.++
T Consensus       280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d  359 (508)
T KOG0275|consen  280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD  359 (508)
T ss_pred             ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence            99999999999999999999997 79999999999999999999999999999999999999999999999999999998


Q ss_pred             C-eEEEEeCCCcEEEEecCCCeeeE-Ee--cCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecCCCccc
Q 010296          316 E-RVLTVGRDRSMQLWKVPEESRLV-FR--APASSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLD  389 (513)
Q Consensus       316 ~-~~~~~~~d~~i~iwd~~~~~~~~-~~--~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  389 (513)
                      | .+++++.||+|++|+.++..++. +.  +...+|..+...|.+  .++++...++|+|.++. |+.+..+.....   
T Consensus       360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR---  435 (508)
T KOG0275|consen  360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR---  435 (508)
T ss_pred             CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc---
Confidence            8 67799999999999999888763 32  344577788877766  48899999999999864 556666653321   


Q ss_pred             CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccE
Q 010296          390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGF  469 (513)
Q Consensus       390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  469 (513)
                                                     ..+...+.+.||.|.++++.+.|+.++.|.+.++ ..-..+..  |...
T Consensus       436 -------------------------------EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~V--hEkd  481 (508)
T KOG0275|consen  436 -------------------------------EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPV--HEKD  481 (508)
T ss_pred             -------------------------------cCCceEEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeec--cccc
Confidence                                           1122567789999999999999999999999998 33333332  6677


Q ss_pred             EEEEEeecCCCEEEEEecCCCcccccc
Q 010296          470 VNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       470 v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      |..++-+|..+.||+- +.||.+++|.
T Consensus       482 vIGl~HHPHqNllAsY-sEDgllKLWk  507 (508)
T KOG0275|consen  482 VIGLTHHPHQNLLASY-SEDGLLKLWK  507 (508)
T ss_pred             ccccccCcccchhhhh-cccchhhhcC
Confidence            8889999998888887 9999999995

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.8e-33  Score=250.31  Aligned_cols=291  Identities=16%  Similarity=0.224  Sum_probs=220.2

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      -..+++|+..|+++++.|.|..|++|+.|.+|++||+.........+.              .........|.++.|++.
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr--------------~l~P~E~h~i~sl~ys~T  225 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR--------------QLQPCETHQINSLQYSVT  225 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhh--------------ccCcccccccceeeecCC
Confidence            346789999999999999999999999999999999987553321110              012234556999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceee------------eccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCce-e
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQ------------AFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAY-I  297 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~  297 (513)
                      |..|++.+....++|+|-...+.+.            .-++|...++|.+|+|..+ .+++++.||+++||++...+. +
T Consensus       226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~  305 (641)
T KOG0772|consen  226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL  305 (641)
T ss_pred             CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence            9999988888999999965433322            2367999999999999764 588999999999999986543 3


Q ss_pred             EEee-----cccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCee----eEEecCCC--CeeEEEeecCCe-EEEEeCC
Q 010296          298 STLF-----GHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESR----LVFRAPAS--SLECCCFISNDE-FLSGSDD  364 (513)
Q Consensus       298 ~~~~-----~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~----~~~~~~~~--~v~~~~~~~~~~-~~~~~~d  364 (513)
                      ..+.     +..-++++++|++++.++ +++.||.|.+|+......    .....|..  .|+|+.|+++|. |++-+.|
T Consensus       306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D  385 (641)
T KOG0772|consen  306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD  385 (641)
T ss_pred             eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence            3332     234478999999999666 778899999999854332    24455655  899999999997 7799999


Q ss_pred             CCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec--
Q 010296          365 GSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA--  441 (513)
Q Consensus       365 g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~--  441 (513)
                      +++++||++..+ ++......                                   ....+-+.++|||+.++|++|.  
T Consensus       386 ~tLKvWDLrq~kkpL~~~tgL-----------------------------------~t~~~~tdc~FSPd~kli~TGtS~  430 (641)
T KOG0772|consen  386 DTLKVWDLRQFKKPLNVRTGL-----------------------------------PTPFPGTDCCFSPDDKLILTGTSA  430 (641)
T ss_pred             CceeeeeccccccchhhhcCC-----------------------------------CccCCCCccccCCCceEEEecccc
Confidence            999999998754 44443321                                   1112267899999999999986  


Q ss_pred             ----CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296          442 ----GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       442 ----~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W  495 (513)
                          ..|.+.+||..+. ..+..+..  ....|..+.|+|.-+.|+++ +.||.++++
T Consensus       431 ~~~~~~g~L~f~d~~t~-d~v~ki~i--~~aSvv~~~WhpkLNQi~~g-sgdG~~~vy  484 (641)
T KOG0772|consen  431 PNGMTAGTLFFFDRMTL-DTVYKIDI--STASVVRCLWHPKLNQIFAG-SGDGTAHVY  484 (641)
T ss_pred             cCCCCCceEEEEeccce-eeEEEecC--CCceEEEEeecchhhheeee-cCCCceEEE
Confidence                3478999998776 22222222  36778899999998888888 667888877

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.8e-33  Score=228.41  Aligned_cols=276  Identities=17%  Similarity=0.220  Sum_probs=236.3

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-C
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-D  231 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~  231 (513)
                      +.+++|.+.|.+|+|+-+|..|++|+.|+++.+|++........+                 ...+|...|-.++|+| +
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~~   76 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPKH   76 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCCC
Confidence            667899999999999999999999999999999999877544433                 4578999999999998 5


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEE
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID  311 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  311 (513)
                      ...|++++.|.+|++||+++++++..+....+. .-+.|+|+|.++++++.|..|.+.|.++.+.+.... ....+.-++
T Consensus        77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~  154 (313)
T KOG1407|consen   77 PDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEIS  154 (313)
T ss_pred             CcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeee
Confidence            678999999999999999999999888754444 458999999999999999999999999988776654 556678888


Q ss_pred             eeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296          312 CLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLL  388 (513)
Q Consensus       312 ~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  388 (513)
                      |+.++.++ .....|.|.|.....-+++ .+..|.....|+.|+|.|+ |++|+.|..+.+||+...-+++.+..     
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-----  229 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-----  229 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-----
Confidence            88766544 5555699999998876665 6788999999999999996 88999999999999999888888743     


Q ss_pred             cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCccc
Q 010296          389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG  468 (513)
Q Consensus       389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~  468 (513)
                                                      +.-+|..|.||.+|++||+||.|..|-|=++.++    ..+..+++.+
T Consensus       230 --------------------------------ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG----d~~~eI~~~~  273 (313)
T KOG1407|consen  230 --------------------------------LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG----DRVWEIPCEG  273 (313)
T ss_pred             --------------------------------ccCceEEEEeccCcceeeccCccceEEeEecccC----CeEEEeeccC
Confidence                                            3334999999999999999999999999999999    4556667889


Q ss_pred             EEEEEEeecCCCEEEEEecC
Q 010296          469 FVNSLAFAKSGQFLIAGVGQ  488 (513)
Q Consensus       469 ~v~~v~~sp~~~~l~~~~~~  488 (513)
                      +...|+|+|...+||.++++
T Consensus       274 ~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  274 PTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             CceeEEecCCCceeeEEecC
Confidence            99999999999999988543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-33  Score=229.46  Aligned_cols=286  Identities=16%  Similarity=0.260  Sum_probs=239.8

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR  233 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  233 (513)
                      .++||..+|+.|.|+.+|.+|++|+.|.++.||-..+|+.+-++                   .+|.+.|+|++...+.+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-------------------~GHtGavW~~Did~~s~   65 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-------------------DGHTGAVWCCDIDWDSK   65 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-------------------cCCCceEEEEEecCCcc
Confidence            57899999999999999999999999999999999888887754                   89999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-----CCcEEEEeCC-------CCceeEEee
Q 010296          234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-----DRTVKIWNAE-------DRAYISTLF  301 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~-------~~~~~~~~~  301 (513)
                      +|++|+.|.++++||+.+|+++..++ ...+|..+.|+++|++++.+..     .+.|.++|++       ...+...+.
T Consensus        66 ~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~  144 (327)
T KOG0643|consen   66 HLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP  144 (327)
T ss_pred             eeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence            99999999999999999999999998 6678999999999998876654     4679999998       445677788


Q ss_pred             cccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe
Q 010296          302 GHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~  377 (513)
                      .+...++.+.|.|-+ .+++|..+|.|.+||++++...  ....|...|+.+.++++.. |++++.|.+-++||..+...
T Consensus       145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v  224 (327)
T KOG0643|consen  145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV  224 (327)
T ss_pred             CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceee
Confidence            888999999999976 5568889999999999998665  3456788999999999985 88999999999999999999


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC--
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET--  455 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~--  455 (513)
                      +.++....+                                      |++.+++|....++.|+.....-|=-.....  
T Consensus       225 ~Kty~te~P--------------------------------------vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GK  266 (327)
T KOG0643|consen  225 LKTYTTERP--------------------------------------VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGK  266 (327)
T ss_pred             EEEeeeccc--------------------------------------ccceecccccceEEecCCceeeeeeeecccccc
Confidence            998876554                                      9999999988888777654333222222110  


Q ss_pred             -----------cceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          456 -----------KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       456 -----------~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                                 ..+..+.  .|-++|++|+|+|+|+..++| |.||.|++....+.
T Consensus       267 FEArFyh~i~eEEigrvk--GHFGPINsvAfhPdGksYsSG-GEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  267 FEARFYHLIFEEEIGRVK--GHFGPINSVAFHPDGKSYSSG-GEDGYVRLHHFDSN  319 (327)
T ss_pred             hhhhHHHHHHHHHhcccc--ccccCcceeEECCCCcccccC-CCCceEEEEEeccc
Confidence                       0111122  388999999999999999988 99999999865543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-33  Score=262.11  Aligned_cols=295  Identities=18%  Similarity=0.299  Sum_probs=251.2

Q ss_pred             CCCcccchhhhhccCCCeEEEEE-CCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296          145 KPEATDEFRVLLKHRQSVTAVAL-SEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI  223 (513)
Q Consensus       145 ~~~~~~~~~~~~~h~~~V~~~~~-s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (513)
                      +.........+.|..+.|..|+| .|..++||+++..+.+++|++.+..+.                    .+.+|...|
T Consensus       309 d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--------------------ii~GH~e~v  368 (775)
T KOG0319|consen  309 DEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--------------------IIPGHTEAV  368 (775)
T ss_pred             EccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE--------------------EEeCchhhe
Confidence            45666777888899999999998 467899999999999999988877654                    247999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcc----eeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCce--
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAY--  296 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~--  296 (513)
                      .++....+|-+|++|+.|.++++|.++.+.    ++....+|.+.|.+++++..+ .+|+++|.|++|++|++...+.  
T Consensus       369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~  448 (775)
T KOG0319|consen  369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA  448 (775)
T ss_pred             eeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence            999966678899999999999999874432    456678899999999997755 5788999999999999976221  


Q ss_pred             ---e----EEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCC
Q 010296          297 ---I----STLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGS  366 (513)
Q Consensus       297 ---~----~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~  366 (513)
                         +    .+...|...|++++++|+..++ +|+.|.+.++|++...... ++.+|...+.|+.|++..+ +++++.|++
T Consensus       449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T  528 (775)
T KOG0319|consen  449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT  528 (775)
T ss_pred             ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence               1    1235699999999999988665 8999999999999966655 7899999999999999986 779999999


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV  446 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v  446 (513)
                      |+||.+.+..++.++.                                     +|...|..+.|-.+++.|++++.||.|
T Consensus       529 vKIW~is~fSClkT~e-------------------------------------GH~~aVlra~F~~~~~qliS~~adGli  571 (775)
T KOG0319|consen  529 VKIWSISTFSCLKTFE-------------------------------------GHTSAVLRASFIRNGKQLISAGADGLI  571 (775)
T ss_pred             EEEEEeccceeeeeec-------------------------------------CccceeEeeeeeeCCcEEEeccCCCcE
Confidence            9999999999999995                                     444559999999999999999999999


Q ss_pred             EEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      +||++++. .....+..  |...|++++-+|...++++| +.||+|.+|.-.+.
T Consensus       572 KlWnikt~-eC~~tlD~--H~DrvWaL~~~~~~~~~~tg-g~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  572 KLWNIKTN-ECEMTLDA--HNDRVWALSVSPLLDMFVTG-GGDGRIIFWKDVTE  621 (775)
T ss_pred             EEEeccch-hhhhhhhh--ccceeEEEeecCccceeEec-CCCeEEEEeecCcH
Confidence            99999998 45555554  89999999999999988888 99999999965443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.3e-33  Score=240.13  Aligned_cols=265  Identities=20%  Similarity=0.348  Sum_probs=234.8

Q ss_pred             cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      .+|+....+...++.||...|..+++|+...||++++.|+.|+.||+...+.++.+                   .+|-.
T Consensus       176 kIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-------------------hGHlS  236 (460)
T KOG0285|consen  176 KIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-------------------HGHLS  236 (460)
T ss_pred             EEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-------------------ccccc
Confidence            36888888999999999999999999999999999999999999999999988754                   79999


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      .|+|++.+|.-..|++|+.|.+++|||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++||++.++...++.
T Consensus       237 ~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt  316 (460)
T KOG0285|consen  237 GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT  316 (460)
T ss_pred             eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee
Confidence            99999999999999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             cccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEE
Q 010296          302 GHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  380 (513)
                      .|...|.+++.+|...+++.+....|+-|++..+..+ .+.+|...+.+++...++.+++|+.+|.|.+||.+++-..+.
T Consensus       317 ~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~  396 (460)
T KOG0285|consen  317 HHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQR  396 (460)
T ss_pred             cccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCccccc
Confidence            9999999999999887776666678999999887765 567888899999999999999999999999999999866554


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      +......                     |.        ......|++.+|...|..|++|..|.+|++|.-...
T Consensus       397 ~~t~vqp---------------------GS--------l~sEagI~as~fDktg~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  397 GQTIVQP---------------------GS--------LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             ccccccC---------------------Cc--------cccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence            4321110                     00        112233999999999999999999999999986554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2e-33  Score=233.87  Aligned_cols=251  Identities=22%  Similarity=0.356  Sum_probs=215.5

Q ss_pred             CCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEE
Q 010296          211 DPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIW  289 (513)
Q Consensus       211 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  289 (513)
                      .|.....+|.+.|+.+.|+|+|.+||+|+.|..|.+|++. ..+-...+++|.+.|..+.|.++++.|++++.|.+|+.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            3455678999999999999999999999999999999954 345567788999999999999999999999999999999


Q ss_pred             eCCCCceeEEeecccCCeEEEEeeCCC-eEE-EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-eEEEEeCCCC
Q 010296          290 NAEDRAYISTLFGHQSEVLTIDCLRKE-RVL-TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND-EFLSGSDDGS  366 (513)
Q Consensus       290 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~  366 (513)
                      |++++++++.+++|..-|+++....-| .++ +++.|+++++||+++...+........++++.|...+ .+++|+-|+.
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence            999999999999999999999855545 444 7778999999999998888777778899999999887 4899999999


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV  446 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v  446 (513)
                      |++||++....++++.                                     +|..+|+.+..+|+|.++.+-+.|.+|
T Consensus       198 ikvWd~r~~d~~~~ls-------------------------------------Gh~DtIt~lsls~~gs~llsnsMd~tv  240 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLS-------------------------------------GHADTITGLSLSRYGSFLLSNSMDNTV  240 (338)
T ss_pred             eeeeccccCcceEEee-------------------------------------cccCceeeEEeccCCCccccccccceE
Confidence            9999999999998884                                     455559999999999999999999999


Q ss_pred             EEEEeCCC---CcceeeeeecCcc--cEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          447 RLWAIESE---TKDIQPLYNLPLV--GFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       447 ~vwd~~~~---~~~~~~~~~~~~~--~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      ++||++..   .+.+..+....|.  -....++|+|++.++.++ +.|..+.+||...
T Consensus       241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag-s~dr~vyvwd~~~  297 (338)
T KOG0265|consen  241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG-SADRFVYVWDTTS  297 (338)
T ss_pred             EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccc-cccceEEEeeccc
Confidence            99999754   2224444443332  335678999999999888 8899999998765

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.3e-32  Score=226.75  Aligned_cols=306  Identities=19%  Similarity=0.345  Sum_probs=232.1

Q ss_pred             hhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCC-ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          154 VLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSG-KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      .-..-.+.|.+|+||| ...+|+.++.||+||+|+++.. ....                  .....|.++|.+++|+.+
T Consensus        22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsdd   83 (347)
T KOG0647|consen   22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDD   83 (347)
T ss_pred             cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccC
Confidence            3345578999999999 4556668999999999999874 2221                  123578999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC--eEEEEeCCCcEEEEeCCCCceeEEeecccCCeEE
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS--ELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLT  309 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  309 (513)
                      |..+++|+.|+.+++||+.+++ +..+..|.++|.++.|-+...  .|+||++|.+|+.||++...++.++. -...+++
T Consensus        84 gskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa  161 (347)
T KOG0647|consen   84 GSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA  161 (347)
T ss_pred             CceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence            9999999999999999999995 455667999999999988665  68999999999999999988888876 5667777


Q ss_pred             EEeeCCCeEEEEeCCCcEEEEecCCCeee---EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCC--CeeEEeec
Q 010296          310 IDCLRKERVLTVGRDRSMQLWKVPEESRL---VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRK--KPVYIVKN  383 (513)
Q Consensus       310 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~--~~~~~~~~  383 (513)
                      +..- ...++++..++.|.+|++..+...   ........+.|++..++.. ++.|+..|.+-|..+..+  +.-.+++.
T Consensus       162 ~Dv~-~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC  240 (347)
T KOG0647|consen  162 ADVL-YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC  240 (347)
T ss_pred             hhcc-CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence            7653 345667888999999999765443   2223445678888887764 899999999999988876  33444443


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                      +.....                     .       ...-..|++|+|+|.-..|+|++.||++.+||-... ..++..  
T Consensus       241 HR~~~~---------------------~-------~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s--  289 (347)
T KOG0647|consen  241 HRSTNS---------------------V-------NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTS--  289 (347)
T ss_pred             eccCCC---------------------C-------CCceEEecceEeecccceEEEecCCceEEEecchhh-hhhhcc--
Confidence            332110                     0       011234999999999999999999999999998776 222222  


Q ss_pred             cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccceEEEecc
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIK  511 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~~~~l~  511 (513)
                      ..+..+|++.+|+.+|.++|.+.|.|-.-.-=...+..++.+++++..
T Consensus       290 ~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~~~~~I~l~~~~  337 (347)
T KOG0647|consen  290 ETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNNPQYKPQIFLHPVS  337 (347)
T ss_pred             CcCCCccceeEecCCCCEEEEEeecccccccccCCCCCCCeEEEeecc
Confidence            337899999999999999999989882221112344556778887754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.9e-33  Score=245.06  Aligned_cols=277  Identities=19%  Similarity=0.287  Sum_probs=232.0

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ..+|++++|+|..++=+.....-.|.||+..+......+                   ......|+++.|..||++|++|
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~-------------------srFk~~v~s~~fR~DG~LlaaG   86 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTF-------------------SRFKDVVYSVDFRSDGRLLAAG   86 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhH-------------------HhhccceeEEEeecCCeEEEcc
Confidence            478999999997665333333468999999887766643                   4557789999999999999999


Q ss_pred             eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-
Q 010296          239 GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-  316 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  316 (513)
                      ...|.|+|+|+.+...++.+.+|+.+|..+.|+|.++. |++|+.|+.+++||+.+......+.+|...|.|.+|+|.. 
T Consensus        87 D~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~  166 (487)
T KOG0310|consen   87 DESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAND  166 (487)
T ss_pred             CCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCC
Confidence            99999999998887788999999999999999997654 6688889999999999988766889999999999999954 


Q ss_pred             -eEEEEeCCCcEEEEecCCC-eeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296          317 -RVLTVGRDRSMQLWKVPEE-SRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF  394 (513)
Q Consensus       317 -~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
                       .+++|+.||.|++||++.. ..+....|..+|..+.+.|.|.+++......|+|||+.+|..+....            
T Consensus       167 hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~------------  234 (487)
T KOG0310|consen  167 HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSM------------  234 (487)
T ss_pred             eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhh------------
Confidence             4669999999999999987 56677889999999999999876666667789999999664433322            


Q ss_pred             ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEE
Q 010296          395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLA  474 (513)
Q Consensus       395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~  474 (513)
                                              ..|...|+|+++..++..|++|+-|+.|++|++.+.    +........++|.+++
T Consensus       235 ------------------------~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~----Kvv~s~~~~~pvLsia  286 (487)
T KOG0310|consen  235 ------------------------FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY----KVVHSWKYPGPVLSIA  286 (487)
T ss_pred             ------------------------hcccceEEEEEeecCCceEeecccccceEEEEccce----EEEEeeecccceeeEE
Confidence                                    224455999999999999999999999999997664    5566666789999999


Q ss_pred             eecCCCEEEEEecCCCccccc
Q 010296          475 FAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       475 ~sp~~~~l~~~~~~dg~v~~W  495 (513)
                      .+|+++.+++| ..+|.+.+=
T Consensus       287 vs~dd~t~viG-msnGlv~~r  306 (487)
T KOG0310|consen  287 VSPDDQTVVIG-MSNGLVSIR  306 (487)
T ss_pred             ecCCCceEEEe-cccceeeee
Confidence            99999999999 778777655

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.1e-34  Score=244.44  Aligned_cols=292  Identities=15%  Similarity=0.273  Sum_probs=239.7

Q ss_pred             cchhhhhccCCCeEEEEECCCC-CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          150 DEFRVLLKHRQSVTAVALSEDD-SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ..+..|.+|...|.|++=+|.. ..+++|+.||.|+|||+....+...+                   ..|.+.|..|++
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-------------------~AH~G~V~Gi~v  117 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-------------------KAHEGLVRGICV  117 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-------------------ecccCceeeEEe
Confidence            4456778999999999999987 78999999999999999988877754                   789999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      ..  ..+++++.|.+|+.|.+.. .++.++. ....+..+.-+..+..++||+.  .|.|||.....++..+.-....|.
T Consensus       118 ~~--~~~~tvgdDKtvK~wk~~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~  191 (433)
T KOG0268|consen  118 TQ--TSFFTVGDDKTVKQWKIDG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSIS  191 (433)
T ss_pred             cc--cceEEecCCcceeeeeccC-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCcee
Confidence            86  6788999999999999764 4666665 3455677777777778888875  599999998889998887888899


Q ss_pred             EEEeeCCC--eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCC-eeEEeecC
Q 010296          309 TIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKK-PVYIVKNA  384 (513)
Q Consensus       309 ~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~-~~~~~~~~  384 (513)
                      ++.|+|-.  .|+++++|+.|.+||++...++...........++|+|... |++++.|..++.||++... ++...   
T Consensus       192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~---  268 (433)
T KOG0268|consen  192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH---  268 (433)
T ss_pred             EEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhh---
Confidence            99999964  45577799999999999998886666666777899999765 8899999999999998754 33222   


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL  464 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~  464 (513)
                                                        ..|.+.|.++.|||.|+-|++||.|.+|+||.++.+. . ..++..
T Consensus       269 ----------------------------------~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-S-RdiYht  312 (433)
T KOG0268|consen  269 ----------------------------------KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-S-RDIYHT  312 (433)
T ss_pred             ----------------------------------cccceeEEEeccCCCcchhccccccceEEEeecCCCc-c-hhhhhH
Confidence                                              4455669999999999999999999999999998872 1 122211


Q ss_pred             CcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccceE
Q 010296          465 PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVL  506 (513)
Q Consensus       465 ~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~  506 (513)
                      .-...|.||.||-|.+|+++| ++|+.|++|......+.+++
T Consensus       313 kRMq~V~~Vk~S~Dskyi~SG-Sdd~nvRlWka~Aseklgv~  353 (433)
T KOG0268|consen  313 KRMQHVFCVKYSMDSKYIISG-SDDGNVRLWKAKASEKLGVI  353 (433)
T ss_pred             hhhheeeEEEEeccccEEEec-CCCcceeeeecchhhhcCCC
Confidence            235679999999999999999 99999999987777666654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-32  Score=254.92  Aligned_cols=284  Identities=19%  Similarity=0.297  Sum_probs=245.0

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      ..+.+|+..|.++++|.+...+++|+ .+.|+||+..+.++++++                     ...-+.+..|-|.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi---------------------~~~y~l~~~Fvpgd  424 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTI---------------------TCGYILASKFVPGD  424 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEe---------------------ccccEEEEEecCCC
Confidence            35679999999999999988787776 478999999999998876                     12368899999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC-----Cce--eEEe-----
Q 010296          233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED-----RAY--ISTL-----  300 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~--~~~~-----  300 (513)
                      +++++|...|.+.+||+.+...+.++++|.+.|++++.+|++..+++|+.|.+|++||..-     +..  +-.+     
T Consensus       425 ~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt  504 (888)
T KOG0306|consen  425 RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT  504 (888)
T ss_pred             ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence            9999999999999999999999999999999999999999999999999999999999742     111  1111     


Q ss_pred             ecccCCeEEEEeeCCCeEEEEe-CCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe
Q 010296          301 FGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~  377 (513)
                      ..-...|.|+.++|++++++++ -|++|++|-+.+-+.. .+.+|.-+|.|+..+|++. +++|+.|.+|+||-+.-|.+
T Consensus       505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC  584 (888)
T KOG0306|consen  505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC  584 (888)
T ss_pred             EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence            1246689999999999888655 7999999999987765 7789999999999999997 77999999999999999988


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcc
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKD  457 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~  457 (513)
                      ...+                                     .+|...|+++.|.|...++++++.|+.|+-||-..- ..
T Consensus       585 HKS~-------------------------------------fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF-e~  626 (888)
T KOG0306|consen  585 HKSF-------------------------------------FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF-EE  626 (888)
T ss_pred             hhhh-------------------------------------hcccCceeEEEEcccceeEEEecCcceEEeechhhh-hh
Confidence            7776                                     445555999999999999999999999999997765 45


Q ss_pred             eeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          458 IQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       458 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      ++.+..  |...|+|++.+|+|.+++++ +.|.+|++|....
T Consensus       627 iq~L~~--H~~ev~cLav~~~G~~vvs~-shD~sIRlwE~td  665 (888)
T KOG0306|consen  627 IQKLDG--HHSEVWCLAVSPNGSFVVSS-SHDKSIRLWERTD  665 (888)
T ss_pred             heeecc--chheeeeeEEcCCCCeEEec-cCCceeEeeeccC
Confidence            555554  88999999999999999999 9999999997654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=5.8e-32  Score=235.83  Aligned_cols=324  Identities=16%  Similarity=0.277  Sum_probs=265.3

Q ss_pred             chhHHHHHHhhHHHHHhcCceeE--EeeccccCCCcccchhhhhccC-------CCeEEEEECCCCCeEEEEeCCceEEE
Q 010296          115 ERDSLVAKILQQEQLEESGRVRR--VIASRVQKPEATDEFRVLLKHR-------QSVTAVALSEDDSKGFSASKDGSILH  185 (513)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~-------~~V~~~~~s~~~~~l~t~~~dg~v~i  185 (513)
                      ....++.............+..+  .++..+.......++.....|.       -.|+++...|..+.++||+.|..+.+
T Consensus       166 ~s~~i~~~l~~~aq~ls~~rKkrg~k~p~~la~~d~~~~~~q~ash~gLH~t~~pgi~ald~~~s~~~ilTGG~d~~av~  245 (506)
T KOG0289|consen  166 LSPEIIQKLEDKAQVLSQERKKRGKKLPEKLATTDELSCLLQVASHTGLHSTSTPGITALDIIPSSSKILTGGEDKTAVL  245 (506)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhccccCCcccccHHHHHHHHhcCCCcceeccCCCCeeEEeecCCCCcceecCCCCceEE
Confidence            34445555554444444444333  6777777777777777766665       46889999998889999999999999


Q ss_pred             EeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCe
Q 010296          186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPV  265 (513)
Q Consensus       186 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v  265 (513)
                      +|..+++.+..+                   .+|...|+.+.|+|+...+++++.|..|+||.............|..+|
T Consensus       246 ~d~~s~q~l~~~-------------------~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V  306 (506)
T KOG0289|consen  246 FDKPSNQILATL-------------------KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPV  306 (506)
T ss_pred             Eecchhhhhhhc-------------------cCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccc
Confidence            999998888754                   8999999999999999999999999999999998888888888999999


Q ss_pred             EEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc--cCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEe
Q 010296          266 SCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH--QSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFR  341 (513)
Q Consensus       266 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~  341 (513)
                      +.+..+|.|.||++++.|++..+.|++++.++......  .-.+++.+|+|||.++ ++..|+.|++||+..+... .|.
T Consensus       307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp  386 (506)
T KOG0289|consen  307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP  386 (506)
T ss_pred             eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence            99999999999999999999999999999988776532  2358999999999777 7889999999999988765 788


Q ss_pred             cCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCC
Q 010296          342 APASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSS  420 (513)
Q Consensus       342 ~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  420 (513)
                      +|.++|..++|+.+|+ +++++.|+.|++||++..+...++......                                 
T Consensus       387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~---------------------------------  433 (506)
T KOG0289|consen  387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK---------------------------------  433 (506)
T ss_pred             CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc---------------------------------
Confidence            8999999999999997 779999999999999998877777643321                                 


Q ss_pred             CcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC-cccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          421 AYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       421 ~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                         .+.++.|.+.|.+|+.++.+  |+||-+....+.+..+.... |.+..+++.|....++|+++ |.|..++++.
T Consensus       434 ---~v~s~~fD~SGt~L~~~g~~--l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~-smd~~l~~~a  504 (506)
T KOG0289|consen  434 ---EVNSLSFDQSGTYLGIAGSD--LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAST-SMDAILRLYA  504 (506)
T ss_pred             ---cceeEEEcCCCCeEEeecce--eEEEEEecccccceeeehhhhcccccceeeecccceEEeec-cchhheEEee
Confidence               38999999999999999776  55555543334455554443 67789999999999999999 8888877764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.7e-32  Score=222.50  Aligned_cols=252  Identities=25%  Similarity=0.356  Sum_probs=205.8

Q ss_pred             cccchhhh-hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296          148 ATDEFRVL-LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL  226 (513)
Q Consensus       148 ~~~~~~~~-~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (513)
                      ...+...+ .+|+..|.+++|+|.|++|++|+.|.++.||.-..+.....                 ..+.+|.+.|.|+
T Consensus        49 s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv-----------------~~lEGHEnEVK~V  111 (312)
T KOG0645|consen   49 SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECV-----------------ATLEGHENEVKCV  111 (312)
T ss_pred             cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEE-----------------eeeeccccceeEE
Confidence            34444444 37999999999999999999999999999999776543321                 1458999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCc---ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC---CCceeEEe
Q 010296          227 AVSSDGRYLASGGLDRHIHLWDTRIQ---EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE---DRAYISTL  300 (513)
Q Consensus       227 ~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~  300 (513)
                      +|+++|++||+++.|..|-||.+..+   .++..+..|+..|..+.|+|...+|++++.|.+|++|.-.   .-.++.++
T Consensus       112 aws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl  191 (312)
T KOG0645|consen  112 AWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL  191 (312)
T ss_pred             EEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe
Confidence            99999999999999999999998744   4678899999999999999999999999999999999876   23678999


Q ss_pred             ecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCC--Ce
Q 010296          301 FGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK--KP  377 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~--~~  377 (513)
                      .+|...|.+++|.+.| ++++++.|++++||-..+.   ....|...+..+.|. ++.+++++.|+.|++|.....  .+
T Consensus       192 ~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p  267 (312)
T KOG0645|consen  192 DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEP  267 (312)
T ss_pred             cCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCc
Confidence            9999999999999977 8899999999999986532   223455678888898 888999999999999986532  11


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC-CCEEEEecCCCcEEEEEeC
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG-SDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g~~dg~v~vwd~~  452 (513)
                      ...+..                                -....|..-|+++.|.|. ..+|++|+.||.|++|.+.
T Consensus       268 ~~~l~~--------------------------------~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  268 SWNLLA--------------------------------KKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             hHHHHH--------------------------------hhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            111100                                001445556999999994 6899999999999999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-33  Score=228.21  Aligned_cols=251  Identities=20%  Similarity=0.382  Sum_probs=227.8

Q ss_pred             CcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296          147 EATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL  226 (513)
Q Consensus       147 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (513)
                      ....=+.++.+|.+.|.+..++.+....|+++.|-+-+|||..++..+..+                    .|..-|.++
T Consensus        47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--------------------~hkhivk~~  106 (334)
T KOG0278|consen   47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--------------------EHKHIVKAV  106 (334)
T ss_pred             CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--------------------hhhheeeeE
Confidence            444556788999999999999999999999999999999999999988765                    678889999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCcc-eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296          227 AVSSDGRYLASGGLDRHIHLWDTRIQE-HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS  305 (513)
Q Consensus       227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  305 (513)
                      +|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|....+.+++++.|++|++||.+++..++++. ...
T Consensus       107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s  185 (334)
T KOG0278|consen  107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNS  185 (334)
T ss_pred             EecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCC
Confidence            999999999999999999999998654 567788999999999999988999999999999999999999999987 678


Q ss_pred             CeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296          306 EVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       306 ~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                      +|+++.++++|++++....+.|.+||..+-..+........|.+.+.+|+.. |++|+.|..++.||..++..+..+.  
T Consensus       186 ~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n--  263 (334)
T KOG0278|consen  186 PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN--  263 (334)
T ss_pred             CCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecc--
Confidence            8999999999999999999999999999988888777788899999999875 8899999999999999998877642  


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                                        .+|.++|.|+.|+|+|...++||.||+|+||.+..+
T Consensus       264 ----------------------------------kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  264 ----------------------------------KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             ----------------------------------cCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence                                              556677999999999999999999999999998776

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-32  Score=226.74  Aligned_cols=294  Identities=23%  Similarity=0.393  Sum_probs=250.9

Q ss_pred             cccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          148 ATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       148 ~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      ....++.+.||.+.|..++.....+.+.+++.|.+.+||.++++.++..+                   .+|.+.|.+|+
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-------------------~GH~GSVNsik  197 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-------------------TGHTGSVNSIK  197 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-------------------cccccceeeEE
Confidence            45667889999999999999988889999999999999999999998855                   89999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeC------CC----------------------------------cceeeeccCcCCCeEE
Q 010296          228 VSSDGRYLASGGLDRHIHLWDT------RI----------------------------------QEHIQAFPGHRGPVSC  267 (513)
Q Consensus       228 ~s~~~~~l~s~~~dg~i~vwd~------~~----------------------------------~~~~~~~~~~~~~v~~  267 (513)
                      |++.+.++++++.|++..||..      ..                                  ..++..|.+|.+.|.+
T Consensus       198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a  277 (481)
T KOG0300|consen  198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA  277 (481)
T ss_pred             eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence            9999999999999999999971      11                                  0134567889999999


Q ss_pred             EEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCe--eeEEecCC
Q 010296          268 LTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEES--RLVFRAPA  344 (513)
Q Consensus       268 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~--~~~~~~~~  344 (513)
                      ..|...|+.++++++|.+..+||+.++..+..+.+|....+.++.+|..+|+ +.+.|.+.++||++..-  ...|.+|.
T Consensus       278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt  357 (481)
T KOG0300|consen  278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT  357 (481)
T ss_pred             hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc
Confidence            9999999999999999999999999999999999999999999999988776 78889999999998543  23789999


Q ss_pred             CCeeEEEeecCCeEEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcc
Q 010296          345 SSLECCCFISNDEFLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYS  423 (513)
Q Consensus       345 ~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  423 (513)
                      ..|+++.|..+.++++|+.|.+|+|||+++. .++.++....+                                     
T Consensus       358 dtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~-------------------------------------  400 (481)
T KOG0300|consen  358 DTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSP-------------------------------------  400 (481)
T ss_pred             cceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCc-------------------------------------
Confidence            9999999999999999999999999999886 46666654433                                     


Q ss_pred             eEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee--eecCcccEEEEEEeecCCC--EEEEEecCCCcccccccCC
Q 010296          424 WVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL--YNLPLVGFVNSLAFAKSGQ--FLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       424 ~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~--~~~~~~~~v~~v~~sp~~~--~l~~~~~~dg~v~~W~~~~  499 (513)
                       ++.++++..+.+|+.--.+..|++||++.. ......  ....|...|+|++|..+..  -|+++ |-|..+.-|.+..
T Consensus       401 -~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftc-GFDR~v~gW~in~  477 (481)
T KOG0300|consen  401 -ANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTC-GFDRMVAGWKINT  477 (481)
T ss_pred             -cceeEeecCCceEEeccCCceEEEEecCCC-ccccCCcccccccceeeeeeeccccCcccccccc-cccceeeeeEecc
Confidence             889999999899999999999999999875 222211  2234778899999986644  46677 8999999998765


Q ss_pred             C
Q 010296          500 A  500 (513)
Q Consensus       500 ~  500 (513)
                      .
T Consensus       478 p  478 (481)
T KOG0300|consen  478 P  478 (481)
T ss_pred             c
Confidence            4

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-32  Score=259.03  Aligned_cols=310  Identities=14%  Similarity=0.231  Sum_probs=223.7

Q ss_pred             chhhhh-ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          151 EFRVLL-KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       151 ~~~~~~-~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ..+.+. +|.+.|.+|.||+||+|||+||.|+.|+||.+........-......+.      +.....+...++..-.-.
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~------~~~~~~s~~~p~~s~~~~  331 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMY------FEYNANSQIEPSTSSEEK  331 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhh------hhhhhccccCcccccccc
Confidence            334555 8999999999999999999999999999999987443211000000000      000000000000000000


Q ss_pred             CCCC--EEEEEeCCCcEEEEeCC----CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc
Q 010296          230 SDGR--YLASGGLDRHIHLWDTR----IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH  303 (513)
Q Consensus       230 ~~~~--~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  303 (513)
                      ..++  ..-.+.....+ +....    ..+++..|.+|.+.|..|.|+.+ ++|++++.|.+|++|++....|+..|. |
T Consensus       332 ~~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-H  408 (712)
T KOG0283|consen  332 ISSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-H  408 (712)
T ss_pred             ccccccccccccCCccc-cCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-c
Confidence            0011  11122222222 22211    34678889999999999999976 689999999999999999999999987 9


Q ss_pred             cCCeEEEEeeC--CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEE
Q 010296          304 QSEVLTIDCLR--KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       304 ~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~  380 (513)
                      ..-|+|++|+|  +.+|++|+-|+.|+||++...+.........-|++++|.|+|. .++|+.+|.+++|+....+....
T Consensus       409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence            99999999999  4578899999999999999998887777778999999999997 66999999999999999887776


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCccee
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETKDIQ  459 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~  459 (513)
                      +........                            ...+. .|+.+.|.|.. ..|++.+.|..|||||.++. ..+.
T Consensus       489 ~~I~~~~~K----------------------------k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~  538 (712)
T KOG0283|consen  489 FHIRLHNKK----------------------------KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVH  538 (712)
T ss_pred             eeEeeccCc----------------------------cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhh
Confidence            653322110                            02222 69999999854 35777788999999999776 5566


Q ss_pred             eeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          460 PLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       460 ~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      .+..+.....-....|+.||++|+++ ++|..|++|+....
T Consensus       539 KfKG~~n~~SQ~~Asfs~Dgk~IVs~-seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  539 KFKGFRNTSSQISASFSSDGKHIVSA-SEDSWVYIWKNDSF  578 (712)
T ss_pred             hhcccccCCcceeeeEccCCCEEEEe-ecCceEEEEeCCCC
Confidence            66665555556677999999999999 79999999997443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.8e-32  Score=254.08  Aligned_cols=225  Identities=19%  Similarity=0.323  Sum_probs=201.2

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+-.-...+..+..|.++|..++|+|.+.++++||.|..|+||++.+.+++.++                   .+|..-
T Consensus        35 lWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-------------------~GHlDY   95 (1202)
T KOG0292|consen   35 LWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-------------------LGHLDY   95 (1202)
T ss_pred             eehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-------------------ccccce
Confidence            5666777888999999999999999999999999999999999999999988755                   799999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc-------
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA-------  295 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------  295 (513)
                      |..+.|++.-.+++++|.|.+|+||++.+++++..+.+|...|.|..|+|....++++|.|.+|+|||+..-+       
T Consensus        96 VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg  175 (1202)
T KOG0292|consen   96 VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG  175 (1202)
T ss_pred             eEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999984210       


Q ss_pred             ----------------------eeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee---EEecCCCCeeE
Q 010296          296 ----------------------YISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL---VFRAPASSLEC  349 (513)
Q Consensus       296 ----------------------~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~v~~  349 (513)
                                            ....+.+|...|+-++|+|.- .+++|+.|..|++|.+...+..   +..+|...|.+
T Consensus       176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss  255 (1202)
T KOG0292|consen  176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS  255 (1202)
T ss_pred             CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcce
Confidence                                  123457899999999999965 5668999999999999766554   67899999999


Q ss_pred             EEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCC
Q 010296          350 CCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHP  386 (513)
Q Consensus       350 ~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  386 (513)
                      +.|+|... +++.+.|++|+|||+...+.+.++...+.
T Consensus       256 vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend  293 (1202)
T KOG0292|consen  256 VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND  293 (1202)
T ss_pred             EEecCccceeEecCCCccEEEEecccccceeeeeccCC
Confidence            99999764 77999999999999999999999875543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.4e-33  Score=237.73  Aligned_cols=255  Identities=22%  Similarity=0.405  Sum_probs=214.0

Q ss_pred             cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      .+|+.....+.+.+.||++.|.|+.|.  .+.|++|+.|.+|+|||+++++++.++                   .+|..
T Consensus       220 kiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-------------------ihHce  278 (499)
T KOG0281|consen  220 KIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-------------------IHHCE  278 (499)
T ss_pred             EEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-------------------hhhcc
Confidence            357788889999999999999999995  468999999999999999999998865                   68999


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc---eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQE---HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      .|..+.|+  ..++++++.|.+|.|||+.+..   +.+.+.+|...|+.+.|+.  +++++++.|.+|++|++.++.+++
T Consensus       279 aVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvR  354 (499)
T KOG0281|consen  279 AVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVR  354 (499)
T ss_pred             eeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeeh
Confidence            99999998  5699999999999999997654   3466789999999999964  699999999999999999999999


Q ss_pred             EeecccCCeEEEEeeCCCeE-EEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC
Q 010296          299 TLFGHQSEVLTIDCLRKERV-LTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKK  376 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  376 (513)
                      ++.+|...|.|+.+  .++| ++|++|.+|++||+..+.++ .+.+|..-|.|+.|.. .++++|+.||+|+|||+..+.
T Consensus       355 tl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~-krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  355 TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             hhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC-ceeeeccccceEEEEeccccc
Confidence            99999999999887  4555 48899999999999999887 6788989999999854 479999999999999998764


Q ss_pred             eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      ........-                            ...+...|.+.|..+.|.  ...+++++.|.+|.|||+.++
T Consensus       432 dpra~~~~~----------------------------Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  432 DPRAPASTL----------------------------CLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             CCcccccch----------------------------HHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCC
Confidence            322111000                            001114566679999995  457899999999999999887

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.5e-32  Score=261.37  Aligned_cols=247  Identities=27%  Similarity=0.500  Sum_probs=211.3

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeC-CCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDV-SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ..+.+.+|...|++++|+|++.++++++.|++|+|||+ ..+..++++                   .+|...|++++|+
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-------------------~gH~~~v~~~~f~  255 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-------------------KGHSTYVTSVAFS  255 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe-------------------cCCCCceEEEEec
Confidence            66777899999999999999999999999999999999 444666644                   7999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc--eeEEeecccCC-
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA--YISTLFGHQSE-  306 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~-  306 (513)
                      |+++++++|+.|++|+|||+++++++..+.+|...|++++|++++++|++++.|+.|+|||+.++.  ++..+..+... 
T Consensus       256 p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  335 (456)
T KOG0266|consen  256 PDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA  335 (456)
T ss_pred             CCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999998  56666666555 


Q ss_pred             -eEEEEeeCCCe-EEEEeCCCcEEEEecCCCeee-EEecCCCCee---EEEeecCCe-EEEEeCCCCEEEEecCCCCeeE
Q 010296          307 -VLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL-VFRAPASSLE---CCCFISNDE-FLSGSDDGSIELWSLLRKKPVY  379 (513)
Q Consensus       307 -v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~---~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~  379 (513)
                       ++++.|+|++. +++++.|+.+++|++...... .+..|...+.   ....++.+. +++|+.|+.|++|++.++..+.
T Consensus       336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~  415 (456)
T KOG0266|consen  336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ  415 (456)
T ss_pred             ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh
Confidence             99999999885 558888999999999977655 5556655432   233455665 7799999999999999987777


Q ss_pred             EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec--CCCcEEEEEeC
Q 010296          380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA--GNGSVRLWAIE  452 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~--~dg~v~vwd~~  452 (513)
                      .+..+.                                    ...+..+.++|...++++++  .|+.|++|...
T Consensus       416 ~l~~h~------------------------------------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  416 RLEGHS------------------------------------KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             hhcCCC------------------------------------CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            765431                                    33489999999999999998  78899999754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7e-31  Score=220.92  Aligned_cols=287  Identities=17%  Similarity=0.247  Sum_probs=231.5

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      .+.+..-.+.|++|.|+++|.+|++++.|.+++|||..+++.++++                   ..+.-.|..+.|...
T Consensus         7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-------------------~skkyG~~~~~Fth~   67 (311)
T KOG1446|consen    7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-------------------NSKKYGVDLACFTHH   67 (311)
T ss_pred             ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-------------------ecccccccEEEEecC
Confidence            3455556889999999999999999999999999999999988865                   445556888888777


Q ss_pred             CCEEEEEeC--CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEE
Q 010296          232 GRYLASGGL--DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLT  309 (513)
Q Consensus       232 ~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  309 (513)
                      .+.++.++.  |.+|+..++.+.+.++.|.||...|++|+.+|-+..+++++.|++|++||++..++...+.....  ..
T Consensus        68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi  145 (311)
T KOG1446|consen   68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PI  145 (311)
T ss_pred             CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cc
Confidence            777777765  88999999999999999999999999999999999999999999999999998888777653333  45


Q ss_pred             EEeeCCCeEEEEeCC-CcEEEEecCCCee---eEEe---cCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEe
Q 010296          310 IDCLRKERVLTVGRD-RSMQLWKVPEESR---LVFR---APASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       310 ~~~~~~~~~~~~~~d-~~i~iwd~~~~~~---~~~~---~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                      ++|.|.|.+++.+.. ..|++||++.-..   ..+.   ........+.|+|+|+ ++.++..+.+++.|.-+|..+.++
T Consensus       146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf  225 (311)
T KOG1446|consen  146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF  225 (311)
T ss_pred             eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence            678899977755554 4999999986421   2222   3356788999999997 678888999999999999988887


Q ss_pred             ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296          382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL  461 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~  461 (513)
                      .......                                  .--...+|+|+++++++|+.||+|.+|++.++. .+..+
T Consensus       226 s~~~~~~----------------------------------~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~-~v~~~  270 (311)
T KOG1446|consen  226 SGYPNAG----------------------------------NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK-KVAVL  270 (311)
T ss_pred             eeccCCC----------------------------------CcceeEEECCCCcEEEEecCCCcEEEEEcCCCc-EeeEe
Confidence            6433210                                  013577899999999999999999999999983 33333


Q ss_pred             eecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          462 YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .. ++.+++.++.|+|.-.+++++   +..+-+|-..
T Consensus       271 ~~-~~~~~~~~~~fnP~~~mf~sa---~s~l~fw~p~  303 (311)
T KOG1446|consen  271 RG-PNGGPVSCVRFNPRYAMFVSA---SSNLVFWLPD  303 (311)
T ss_pred             cC-CCCCCccccccCCceeeeeec---CceEEEEecc
Confidence            33 268899999999998877777   3478888544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-32  Score=218.75  Aligned_cols=245  Identities=17%  Similarity=0.268  Sum_probs=210.3

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      .+..+.++|.++.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.+...|++|+.|..|.+||+.+|
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG   91 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG   91 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEeecccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeee---EEecCCCCeeEEEeecCCeEEEEeCCCCEEEE
Q 010296          295 AYISTLFGHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL---VFRAPASSLECCCFISNDEFLSGSDDGSIELW  370 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iw  370 (513)
                      +.++.+.+|.+.|+.+.|+.... +++++.|.++++||.++....   .+......|.++.+.. ..+++|+.||+++.|
T Consensus        92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~DGtvRty  170 (307)
T KOG0316|consen   92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSVDGTVRTY  170 (307)
T ss_pred             eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeeccCCcEEEE
Confidence            99999999999999999998765 558999999999999876543   3444556677776643 358899999999999


Q ss_pred             ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      |++.|....-..                                       ..+|++++|+++++..++++-|++|++.|
T Consensus       171 diR~G~l~sDy~---------------------------------------g~pit~vs~s~d~nc~La~~l~stlrLlD  211 (307)
T KOG0316|consen  171 DIRKGTLSSDYF---------------------------------------GHPITSVSFSKDGNCSLASSLDSTLRLLD  211 (307)
T ss_pred             Eeecceeehhhc---------------------------------------CCcceeEEecCCCCEEEEeeccceeeecc
Confidence            999987544332                                       12399999999999999999999999999


Q ss_pred             eCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          451 IESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      -.++ +.++..........-...+++.....+++| +.||.|.+||+..+.
T Consensus       212 k~tG-klL~sYkGhkn~eykldc~l~qsdthV~sg-SEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  212 KETG-KLLKSYKGHKNMEYKLDCCLNQSDTHVFSG-SEDGKVYFWDLVDET  260 (307)
T ss_pred             cchh-HHHHHhcccccceeeeeeeecccceeEEec-cCCceEEEEEeccce
Confidence            9998 666666664445556677888777888887 999999999987654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=2.8e-32  Score=227.95  Aligned_cols=308  Identities=17%  Similarity=0.226  Sum_probs=238.3

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccc---cccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGV---KYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ...+..|++++.+.+|+|||.++|||+.|-.|+|.|+...-..   ..+.+... ..   .......+..|...|+++.|
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~-qa---~hPvIRTlYDH~devn~l~F  180 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT-QA---RHPVIRTLYDHVDEVNDLDF  180 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc-cc---CCceEeehhhccCcccceee
Confidence            3456789999999999999999999999999999998732111   10100000 00   01223467889999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeeecc--CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe---ecc
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFP--GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL---FGH  303 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~  303 (513)
                      +|....|++|+.|++|+++|+......+.++  ....+|.++.|+|.|.+|+.|..-.++++||+.+.++....   ..|
T Consensus       181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh  260 (430)
T KOG0640|consen  181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH  260 (430)
T ss_pred             cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence            9999999999999999999987543332222  25678999999999999999999999999999998876543   358


Q ss_pred             cCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEE--ecC-CCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCee
Q 010296          304 QSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVF--RAP-ASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPV  378 (513)
Q Consensus       304 ~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~--~~~-~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~  378 (513)
                      .+.|+++.+++.+.+. +++.||.|++||--+++++..  ..| ...|.+..|..+++ +++.+.|..+++|.+.+++++
T Consensus       261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l  340 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML  340 (430)
T ss_pred             ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence            8899999999988655 899999999999988877632  233 45788889999997 668999999999999999999


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCcEEEEEeCCCCcc
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGSVRLWAIESETKD  457 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~  457 (513)
                      .........                                +....-+...|+....+++.-. ..+.+.-||.++..+ 
T Consensus       341 ~~YtGAg~t--------------------------------grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr-  387 (430)
T KOG0640|consen  341 KEYTGAGTT--------------------------------GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR-  387 (430)
T ss_pred             EEEecCCcc--------------------------------cchhhhhhhhhcCccceEEccccccCceeeccccchhh-
Confidence            988754321                                1111134455666666766554 346899999988733 


Q ss_pred             eeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          458 IQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       458 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                       ..+....|.+.+..+.-||.+.-++++ ++|.+.++|-..
T Consensus       388 -~~l~slgHn~a~R~i~HSP~~p~FmTc-sdD~raRFWyrr  426 (430)
T KOG0640|consen  388 -VALLSLGHNGAVRWIVHSPVEPAFMTC-SDDFRARFWYRR  426 (430)
T ss_pred             -hhhcccCCCCCceEEEeCCCCCceeee-cccceeeeeeec
Confidence             445556799999999999999999999 999999999543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.2e-32  Score=219.70  Aligned_cols=280  Identities=19%  Similarity=0.328  Sum_probs=222.9

Q ss_pred             eEEEEECCC-CCeEEEEe-------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-C
Q 010296          162 VTAVALSED-DSKGFSAS-------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-G  232 (513)
Q Consensus       162 V~~~~~s~~-~~~l~t~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~  232 (513)
                      =+++.|||- .++||++.       ..|++.|-++.....+...                 ....-...+..++|+++ .
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~-----------------~s~d~~D~LfdV~Wse~~e   73 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQEC-----------------QSYDTEDGLFDVAWSENHE   73 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEE-----------------EeeecccceeEeeecCCCc
Confidence            367899992 33344332       3688999998755444322                 11234667999999995 4


Q ss_pred             CEEEEEeCCCcEEEEeCC-CcceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEE
Q 010296          233 RYLASGGLDRHIHLWDTR-IQEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI  310 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  310 (513)
                      +.+++++.||++++||+. ...++..++.|...|.++.|++-. ..+++++.|++|++|+...++.+.++.+|...|+..
T Consensus        74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a  153 (311)
T KOG0277|consen   74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA  153 (311)
T ss_pred             ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE
Confidence            578888899999999964 345789999999999999998854 457788999999999999999999999999999999


Q ss_pred             EeeCC--CeEEEEeCCCcEEEEecCCC-eeeEEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCC-eeEEeecC
Q 010296          311 DCLRK--ERVLTVGRDRSMQLWKVPEE-SRLVFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKK-PVYIVKNA  384 (513)
Q Consensus       311 ~~~~~--~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~-~~~~~~~~  384 (513)
                      .|+|.  +.+++++.|+++++||++.. +.+.+..|...+.|+.|+.-+  .+++|+.|+.|++||+++.+ |+..+   
T Consensus       154 ~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL---  230 (311)
T KOG0277|consen  154 AFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL---  230 (311)
T ss_pred             ecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee---
Confidence            99994  56779999999999999764 445688888999999998765  37899999999999998864 44444   


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                                                        .+|.-.|..+.|||.. .+||+++.|=++||||...+...+.....
T Consensus       231 ----------------------------------~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~  276 (311)
T KOG0277|consen  231 ----------------------------------NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH  276 (311)
T ss_pred             ----------------------------------cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc
Confidence                                              4455569999999965 68999999999999999866444444443


Q ss_pred             cCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                        |...|..+.||+-..-.++.+|.|..+.||+.
T Consensus       277 --HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  277 --HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             --cceEEeccccccccCceeeecccccceeeecc
Confidence              88999999999876655555599999999973

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.4e-30  Score=218.08  Aligned_cols=297  Identities=19%  Similarity=0.314  Sum_probs=228.9

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      -...|+.|.|+|.+..|+++++||++++|++........                    ..|..++.+++|.+ ...+++
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~   70 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT   70 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence            367899999999999999999999999999998755443                    37899999999997 557899


Q ss_pred             EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe
Q 010296          238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER  317 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  317 (513)
                      |+.||.|+++|+.++.... +..|..+|.||.+++-...+++|++|++|++||.+....+..+. ....|.++... +.+
T Consensus        71 G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~-g~~  147 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS-GNR  147 (323)
T ss_pred             eccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc-CCE
Confidence            9999999999999887554 44599999999999988899999999999999999866665554 44478888764 568


Q ss_pred             EEEEeCCCcEEEEecCCCeeeE---EecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCC----CeeEEeecCCCccc
Q 010296          318 VLTVGRDRSMQLWKVPEESRLV---FRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRK----KPVYIVKNAHPLLD  389 (513)
Q Consensus       318 ~~~~~~d~~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~  389 (513)
                      |++|+.+..+.+||+++.....   .......+.|+++.|++. +++++.+|.|.+=.+...    +..+.++.+.....
T Consensus       148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~  227 (323)
T KOG1036|consen  148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK  227 (323)
T ss_pred             EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC
Confidence            8899999999999999866543   333456788999999765 999999999988655554    33334433221110


Q ss_pred             CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccE
Q 010296          390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGF  469 (513)
Q Consensus       390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  469 (513)
                      .                            .....+|++|+|+|-...||||+.||.|.+||+.+. +.+..+..  ....
T Consensus       228 ~----------------------------~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~--~~~S  276 (323)
T KOG1036|consen  228 D----------------------------TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAK--YETS  276 (323)
T ss_pred             C----------------------------ceEEEEeceeEeccccceEEecCCCceEEEccCcch-hhhhhccC--CCCc
Confidence            0                            122245999999999999999999999999999987 44444444  2567


Q ss_pred             EEEEEeecCCCEEEEEecCCCcccccccCCCcccceEEEecc
Q 010296          470 VNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIK  511 (513)
Q Consensus       470 v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~~~~l~  511 (513)
                      |.+++|+-+|..||++++.--.-.  +..+...+++.|+.|.
T Consensus       277 I~slsfs~dG~~LAia~sy~ye~~--~~~~~~~~~i~I~~l~  316 (323)
T KOG1036|consen  277 ISSLSFSMDGSLLAIASSYQYERA--DTPTHERNAIFIRDLT  316 (323)
T ss_pred             eEEEEeccCCCeEEEEechhhhcC--CCCCCCCCceEEEecc
Confidence            999999999999999965432111  1124456777777653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=3.9e-31  Score=243.69  Aligned_cols=283  Identities=23%  Similarity=0.381  Sum_probs=236.6

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE-EEEc
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVS  229 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s  229 (513)
                      .-+.+.+|..-|..+++.+.. .++++|.||++++|+-.....+...                 .+.+|.+-|.+ ++|-
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~y~   67 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSICYA   67 (745)
T ss_pred             eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccceec
Confidence            346788999999999987654 7999999999999998666544321                 23456666666 7777


Q ss_pred             C-CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          230 S-DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       230 ~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      + ++-.|++|+.|.+|.+|.+.+..++.++++|...|.++....++. |++||+|.++++|-.  +++...+.+|+..|+
T Consensus        68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVW  144 (745)
T KOG0301|consen   68 ESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVW  144 (745)
T ss_pred             cccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchhee
Confidence            5 455699999999999999999999999999999999999887776 999999999999986  556677999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296          309 TIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLL  388 (513)
Q Consensus       309 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  388 (513)
                      ++...|.+.+++|+.|.+|++|.- .....++.+|...|..+++.+++.|++++.||.|++|++ ++.++...       
T Consensus       145 Av~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~-------  215 (745)
T KOG0301|consen  145 AVASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEM-------  215 (745)
T ss_pred             eeeecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeee-------
Confidence            999999999999999999999986 333447889999999999999999999999999999998 77777776       


Q ss_pred             cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCccc
Q 010296          389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG  468 (513)
Q Consensus       389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~  468 (513)
                                                    .+|...|.+++..+++..++++++|++++||+...   ..+.+..  ...
T Consensus       216 ------------------------------~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e---~~q~I~l--Ptt  260 (745)
T KOG0301|consen  216 ------------------------------HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE---CVQVITL--PTT  260 (745)
T ss_pred             ------------------------------eccceEEEEEEecCCCCeEEEecCCceEEEeecCc---eEEEEec--Ccc
Confidence                                          45556699999888889999999999999999863   3333332  244


Q ss_pred             EEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          469 FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      .|+++.+-++|. |++| +.||.||+|...+.
T Consensus       261 siWsa~~L~NgD-Ivvg-~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  261 SIWSAKVLLNGD-IVVG-GSDGRVRVFTVDKD  290 (745)
T ss_pred             ceEEEEEeeCCC-EEEe-ccCceEEEEEeccc
Confidence            799999999887 5566 78999999987654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.8e-31  Score=244.10  Aligned_cols=334  Identities=18%  Similarity=0.279  Sum_probs=259.0

Q ss_pred             cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      ++|+.......-++.+|..+|+++.|...|..|++||.|+.|.+||+-.......                   +.+|..
T Consensus        90 qif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r-------------------L~GHkd  150 (888)
T KOG0306|consen   90 QIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR-------------------LRGHKD  150 (888)
T ss_pred             EeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE-------------------eecchH
Confidence            4566666677788999999999999999999999999999999999987776654                   489999


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC--------
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED--------  293 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------  293 (513)
                      .|+.+-|....++|++.+.|+.|++||+.+..+..+.-.|.+.|+++++.+  +.+++++.|+.+++|++..        
T Consensus       151 ~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~  228 (888)
T KOG0306|consen  151 SITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETN  228 (888)
T ss_pred             HHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccccccccc
Confidence            999999998889999999999999999999999999999999999999988  7799999999999998700        


Q ss_pred             ---------------------------Cc---------------------------------------------------
Q 010296          294 ---------------------------RA---------------------------------------------------  295 (513)
Q Consensus       294 ---------------------------~~---------------------------------------------------  295 (513)
                                                 .+                                                   
T Consensus       229 ~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~  308 (888)
T KOG0306|consen  229 RYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS  308 (888)
T ss_pred             ccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence                                       00                                                   


Q ss_pred             --------------------------e------------------------------eEEeecccCCeEEEEeeCCCeEE
Q 010296          296 --------------------------Y------------------------------ISTLFGHQSEVLTIDCLRKERVL  319 (513)
Q Consensus       296 --------------------------~------------------------------~~~~~~~~~~v~~~~~~~~~~~~  319 (513)
                                                .                              ...+.+|...|.+++++.+..++
T Consensus       309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~  388 (888)
T KOG0306|consen  309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILL  388 (888)
T ss_pred             HHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceee
Confidence                                      0                              00012466678888888888788


Q ss_pred             EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCc
Q 010296          320 TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDE  398 (513)
Q Consensus       320 ~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (513)
                      ..+..+.|++|+..+.+++...... .+.+..|.|.+. +++|...|.+.+||+.+...+.++..+....-.+...+...
T Consensus       389 ~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~  467 (888)
T KOG0306|consen  389 ASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK  467 (888)
T ss_pred             eecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence            8888899999999988887554444 788889999886 77999999999999999888877774444333332222222


Q ss_pred             CccccccCC-------------CCC----CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296          399 GKISNGHSE-------------NGN----LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL  461 (513)
Q Consensus       399 ~~i~~~~~~-------------~~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~  461 (513)
                      +.+......             ++.    +....-....-...|.|+.+||||++||++--|++|+||-+.+. +....+
T Consensus       468 g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsL  546 (888)
T KOG0306|consen  468 GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSL  546 (888)
T ss_pred             ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeee
Confidence            222211111             010    00000011122345999999999999999999999999999987 333334


Q ss_pred             eecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          462 YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      +  .|.-||.|+.+|||++++++| |.|..|++|.+.-+.
T Consensus       547 Y--GHkLPV~smDIS~DSklivTg-SADKnVKiWGLdFGD  583 (888)
T KOG0306|consen  547 Y--GHKLPVLSMDISPDSKLIVTG-SADKNVKIWGLDFGD  583 (888)
T ss_pred             c--ccccceeEEeccCCcCeEEec-cCCCceEEeccccch
Confidence            4  499999999999999999999 999999999877653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=243.40  Aligned_cols=248  Identities=19%  Similarity=0.391  Sum_probs=213.9

Q ss_pred             CCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 010296          215 RATKQSKHILALAVSS-DGRYLASGGLDRHIHLWDTRI-QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE  292 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  292 (513)
                      .+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +.++++|.+|..+|..++|+++|..+++++.|+.|++||+.
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE  288 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE  288 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc
Confidence            4679999999999999 899999999999999999876 88999999999999999999999999999999999999999


Q ss_pred             CCceeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEE
Q 010296          293 DRAYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIE  368 (513)
Q Consensus       293 ~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~  368 (513)
                      +|+++..+. ....++|+.|+|++  .|++|+.|+.|+.||++++..+ .+..|-..|..+.|.++|. |++.+.|++++
T Consensus       289 TG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~r  367 (503)
T KOG0282|consen  289 TGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVR  367 (503)
T ss_pred             cceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEE
Confidence            999999886 55678999999976  6779999999999999999876 5667778999999999985 99999999999


Q ss_pred             EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEE
Q 010296          369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRL  448 (513)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~v  448 (513)
                      ||+...+-++..+.....                                    ....++..+|+++++++-+.|+.|.+
T Consensus       368 iWe~~~~v~ik~i~~~~~------------------------------------hsmP~~~~~P~~~~~~aQs~dN~i~i  411 (503)
T KOG0282|consen  368 IWENRIPVPIKNIADPEM------------------------------------HTMPCLTLHPNGKWFAAQSMDNYIAI  411 (503)
T ss_pred             EEEcCCCccchhhcchhh------------------------------------ccCcceecCCCCCeehhhccCceEEE
Confidence            999998877765543221                                    22789999999999999999999999


Q ss_pred             EEeCCCCc--ceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          449 WAIESETK--DIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       449 wd~~~~~~--~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      |.+....+  .-+.+......|.-..|.|||||.+|++| ..||.+.+||..+.
T Consensus       412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG-dsdG~v~~wdwkt~  464 (503)
T KOG0282|consen  412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG-DSDGKVNFWDWKTT  464 (503)
T ss_pred             EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee-cCCccEEEeechhh
Confidence            99865421  11233333346777889999999999999 99999999997654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=6.3e-31  Score=252.02  Aligned_cols=281  Identities=25%  Similarity=0.396  Sum_probs=240.6

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      .|...|.|..|+  ..++++++.+++|++|+..++..+..                  .+.+|.+.|++++|..-+.+|+
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv  265 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV  265 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence            367789999998  56899999999999999999887764                  1479999999999998788999


Q ss_pred             EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE  316 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  316 (513)
                      +|+.|.+++|||..+|+++..+.+|...|.++...+  .++++|+.|.+|++|++.++.++..+.+|..+|+++... .+
T Consensus       266 sgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~  342 (537)
T KOG0274|consen  266 SGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EP  342 (537)
T ss_pred             EEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CC
Confidence            999999999999999999999999999999998765  468889999999999999999999999999999999998 77


Q ss_pred             eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCc
Q 010296          317 RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNF  394 (513)
Q Consensus       317 ~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~  394 (513)
                      .+++++.|++|++|++.+.+++ .+.+|...|.++.+.+...+++|+.|++|++||+.++ +++.++..+..        
T Consensus       343 ~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--------  414 (537)
T KOG0274|consen  343 LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--------  414 (537)
T ss_pred             EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcc--------
Confidence            8899999999999999988887 6788999999998877667999999999999999999 88887754332        


Q ss_pred             ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEE
Q 010296          395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLA  474 (513)
Q Consensus       395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~  474 (513)
                                                   .+..+.+  .+++|++++.||+|++||..++ ..++.+... +.+.|.+++
T Consensus       415 -----------------------------~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~-~~~~v~~l~  461 (537)
T KOG0274|consen  415 -----------------------------LVSSLLL--RDNFLVSSSADGTIKLWDAEEG-ECLRTLEGR-HVGGVSALA  461 (537)
T ss_pred             -----------------------------ccccccc--ccceeEeccccccEEEeecccC-ceeeeeccC-CcccEEEee
Confidence                                         2544444  4569999999999999999998 455555443 567888888


Q ss_pred             eecCCCEEEEEecCCCcccccccCCCcccc
Q 010296          475 FAKSGQFLIAGVGQEPRLGRWGHLPAARNG  504 (513)
Q Consensus       475 ~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~  504 (513)
                      +.  ...++++ +.++++++||+..+....
T Consensus       462 ~~--~~~il~s-~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  462 LG--KEEILCS-SDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             cC--cceEEEE-ecCCeeEEEecccCchhh
Confidence            76  3556666 899999999988775443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-30  Score=218.97  Aligned_cols=268  Identities=20%  Similarity=0.260  Sum_probs=217.5

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      .++-.+..|.++|++++.  ++.|+|+||.|-+|+|||+.....+..+                   ..|.+.|+++.|.
T Consensus        34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l-------------------l~HagsitaL~F~   92 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL-------------------LSHAGSITALKFY   92 (362)
T ss_pred             eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce-------------------eccccceEEEEec
Confidence            345667899999999999  5799999999999999999988776644                   6789999999999


Q ss_pred             CCCC--EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296          230 SDGR--YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV  307 (513)
Q Consensus       230 ~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  307 (513)
                      +.-.  .|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.+++.++.+.|+.++.||+-+|+....++ -....
T Consensus        93 ~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~a  171 (362)
T KOG0294|consen   93 PPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKA  171 (362)
T ss_pred             CCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcc
Confidence            9765  89999999999999999999999999999999999999999999999999999999999988765554 23334


Q ss_pred             EEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296          308 LTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPL  387 (513)
Q Consensus       308 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (513)
                      ..+.|+|.|..++.+....|-+|.+..............+.|+.|...+.+++|..++.|.+||.....+...+.     
T Consensus       172 t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-----  246 (362)
T KOG0294|consen  172 TLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFL-----  246 (362)
T ss_pred             eeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeee-----
Confidence            559999998756555566799999887776655555567888889888899999999999999999988877773     


Q ss_pred             ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE--ecCCCEEEEecCCCcEEEEEeCCCCc-ceeeeeec
Q 010296          388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV--CGGSDLAASGAGNGSVRLWAIESETK-DIQPLYNL  464 (513)
Q Consensus       388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~g~~dg~v~vwd~~~~~~-~~~~~~~~  464 (513)
                                                      +|...|-.+.+  .|.+.+|+|+|.||.|+|||+....+ ....+..+
T Consensus       247 --------------------------------AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~  294 (362)
T KOG0294|consen  247 --------------------------------AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAEL  294 (362)
T ss_pred             --------------------------------cchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEe
Confidence                                            44455777774  46778999999999999999987522 22233333


Q ss_pred             CcccEEEEEEee
Q 010296          465 PLVGFVNSLAFA  476 (513)
Q Consensus       465 ~~~~~v~~v~~s  476 (513)
                      .....++|+...
T Consensus       295 n~~~RltCl~~~  306 (362)
T KOG0294|consen  295 NTNVRLTCLRVK  306 (362)
T ss_pred             ecCCccceeeeh
Confidence            335556665543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-29  Score=202.44  Aligned_cols=300  Identities=14%  Similarity=0.146  Sum_probs=231.4

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      ..+..|.+++|+|.|.+.++|+...+++|.....-..++.-.   +. ..............|.+.|+|.+|+|+|.+|+
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~h---ea-~~~pp~v~~kr~khhkgsiyc~~ws~~gelia  105 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAH---EA-AKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA  105 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCccccc---cc-ccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence            356789999999999999999999999998765332221100   00 00000011123467899999999999999999


Q ss_pred             EEeCCCcEEEEeCCCcce-----eeeccCcCCCeEEEEEecC----CCeEEEEe-CCCcEEEEeCCCCceeEEeecccCC
Q 010296          237 SGGLDRHIHLWDTRIQEH-----IQAFPGHRGPVSCLTFRQG----TSELFSGS-FDRTVKIWNAEDRAYISTLFGHQSE  306 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~  306 (513)
                      +|+.|.+|++.-++...+     -..|.-|.+.|..++|..+    +..|++++ .|..|++-|..+++....+.+|.+.
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh  185 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH  185 (350)
T ss_pred             ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence            999999999987654332     2345669999999999643    45566554 4788999999999999999999999


Q ss_pred             eEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEec--------CCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe
Q 010296          307 VLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRA--------PASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       307 v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~  377 (513)
                      |.++---.+..+++++.|.+|++||++-+..+....        ..+.|..+++.|.|+ +++|-.|....+||++.+++
T Consensus       186 ilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~  265 (350)
T KOG0641|consen  186 ILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM  265 (350)
T ss_pred             EEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence            998865556678899999999999999887763322        125688999999998 66888999999999999999


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC-c
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET-K  456 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~-~  456 (513)
                      ++.+..                                     |...|.|+.|||...||++++.|..|++-|+...- .
T Consensus       266 iq~f~p-------------------------------------hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~  308 (350)
T KOG0641|consen  266 IQRFHP-------------------------------------HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH  308 (350)
T ss_pred             eeeeCC-------------------------------------CccceeEEEeCCCceEEEEecccceEEEeecccchhh
Confidence            998843                                     44449999999999999999999999999997641 1


Q ss_pred             ceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          457 DIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       457 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .+..+....|...+..+.|+|..-.++++ +.|.++.+|-..
T Consensus       309 el~~~vv~ehkdk~i~~rwh~~d~sfiss-sadkt~tlwa~~  349 (350)
T KOG0641|consen  309 ELPIMVVAEHKDKAIQCRWHPQDFSFISS-SADKTATLWALN  349 (350)
T ss_pred             cCceEEEEeccCceEEEEecCccceeeec-cCcceEEEeccC
Confidence            22222333478888889999998777777 899999999653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.5e-30  Score=237.05  Aligned_cols=251  Identities=28%  Similarity=0.465  Sum_probs=216.6

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI  223 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (513)
                      |+.........+..|...|.++.|+|++++|++++.+|.|++|++.++.....+                   ..|...|
T Consensus        36 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~-------------------~~~~~~i   96 (289)
T cd00200          36 WDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-------------------TGHTSYV   96 (289)
T ss_pred             EEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-------------------eccCCcE
Confidence            444444456677889999999999999999999999999999999987555433                   4677789


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH  303 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  303 (513)
                      .++.|+|++.++++++.++.|.+|++.+++.+..+..|...|.+++|+|++.++++++.++.|++||+++++.+..+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~  176 (289)
T cd00200          97 SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH  176 (289)
T ss_pred             EEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC
Confidence            99999999889998888999999999989988889899999999999999888888888999999999999888888889


Q ss_pred             cCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEe-cCCCCeeEEEeecCCeEE-EEeCCCCEEEEecCCCCeeEE
Q 010296          304 QSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFR-APASSLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       304 ~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~dg~i~iwd~~~~~~~~~  380 (513)
                      ...+.++.|+|++ .+++++.++.|++|++......... .+...+.++.|++++.++ +++.+|.|++|++.+++++..
T Consensus       177 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~  256 (289)
T cd00200         177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT  256 (289)
T ss_pred             ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEE
Confidence            8899999999988 6778888999999999987666444 777799999999987655 555599999999998887777


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      +..                                     +...|.+++|+|++++|++++.||.|++|+
T Consensus       257 ~~~-------------------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         257 LSG-------------------------------------HTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ccc-------------------------------------cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            652                                     223399999999999999999999999996

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-30  Score=230.02  Aligned_cols=239  Identities=18%  Similarity=0.314  Sum_probs=197.8

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      .+|...|.+++.++||+|||+|+.|..|.||+..+.+.++.+                   .+|.+.|.+++|-.....|
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-------------------~ghr~~V~~L~fr~gt~~l  259 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-------------------KGHRGAVSSLAFRKGTSEL  259 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc-------------------cccccceeeeeeecCccce
Confidence            489999999999999999999999999999999999887754                   7999999999999888899


Q ss_pred             EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  315 (513)
                      ++++.|+.|++|++.....+.++.+|...|.+|....-++.+-+|+.|+++++|++.. .....+.++.+.+-|++|..+
T Consensus       260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~  338 (479)
T KOG0299|consen  260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND  338 (479)
T ss_pred             eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc
Confidence            9999999999999999999999999999999999888777777888999999999944 334456788999999999999


Q ss_pred             CeEEEEeCCCcEEEEecCCCeeeEEe--cC-----------CCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe-eEE
Q 010296          316 ERVLTVGRDRSMQLWKVPEESRLVFR--AP-----------ASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP-VYI  380 (513)
Q Consensus       316 ~~~~~~~~d~~i~iwd~~~~~~~~~~--~~-----------~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~-~~~  380 (513)
                      ..|++|+.+|.|.+|++...+++...  .|           ...|++++..|... +++|+.+|.|++|-+..+-. +..
T Consensus       339 ~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~  418 (479)
T KOG0299|consen  339 EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL  418 (479)
T ss_pred             cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence            99999999999999999888776321  11           12678888888875 77999999999999987722 111


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCcEEEE
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGSVRLW  449 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v~vw  449 (513)
                      +..                                   ....+.|++|+|+++|++|++|. ....+-=|
T Consensus       419 l~~-----------------------------------ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  419 LYS-----------------------------------LSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             eee-----------------------------------cccccEEEEEEEccCCCEEEEeccccccccee
Confidence            110                                   22335599999999999776663 33333333

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-31  Score=241.56  Aligned_cols=244  Identities=19%  Similarity=0.327  Sum_probs=221.1

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      +..+...|.++.|+|...+++++-.+|.|.||+.++...+..+.-..-+|.+..|-+-.+.+++|+.|..|+||+..+++
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e   88 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE   88 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence            34578899999999999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             eeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCe--eeEEecCCCCeeEEEeecCC--eEEEEeCCCCEEEE
Q 010296          296 YISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEES--RLVFRAPASSLECCCFISND--EFLSGSDDGSIELW  370 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iw  370 (513)
                      .+..+..|..-|++++.+|.. .+++++.|-+|++|+....-  ...+.+|...|++++|.|..  .|++++-|++|+||
T Consensus        89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW  168 (794)
T KOG0276|consen   89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW  168 (794)
T ss_pred             eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence            999999999999999999965 77799999999999998754  34889999999999999976  49999999999999


Q ss_pred             ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC--CEEEEecCCCcEEE
Q 010296          371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS--DLAASGAGNGSVRL  448 (513)
Q Consensus       371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~g~~dg~v~v  448 (513)
                      .+.+..+..++..+                                     ...|+|+.+-+.|  .+|++|+.|.+|+|
T Consensus       169 slgs~~~nfTl~gH-------------------------------------ekGVN~Vdyy~~gdkpylIsgaDD~tiKv  211 (794)
T KOG0276|consen  169 SLGSPHPNFTLEGH-------------------------------------EKGVNCVDYYTGGDKPYLISGADDLTIKV  211 (794)
T ss_pred             EcCCCCCceeeecc-------------------------------------ccCcceEEeccCCCcceEEecCCCceEEE
Confidence            99999999998633                                     3349999998855  69999999999999


Q ss_pred             EEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          449 WAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       449 wd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      ||..+. ..++++..  |...|..+.|+|.-+.+++| +.||+|+||+..+-
T Consensus       212 WDyQtk-~CV~TLeG--Ht~Nvs~v~fhp~lpiiisg-sEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  212 WDYQTK-SCVQTLEG--HTNNVSFVFFHPELPIIISG-SEDGTVRIWNSKTY  259 (794)
T ss_pred             eecchH-HHHHHhhc--ccccceEEEecCCCcEEEEe-cCCccEEEecCcce
Confidence            999997 66777776  88889999999999999999 99999999976553

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.98  E-value=7.7e-31  Score=254.33  Aligned_cols=299  Identities=19%  Similarity=0.241  Sum_probs=232.6

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEe--CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSAS--KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      +..+...|.+|..+|+|..++|||  .|+.++||+...--.....+       .............|.+.|+|+.|+|||
T Consensus         9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~-------~~~l~k~l~~m~~h~~sv~CVR~S~dG   81 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEK-------NENLPKHLCTMDDHDGSVNCVRFSPDG   81 (942)
T ss_pred             cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhh-------hcccchhheeeccccCceeEEEECCCC
Confidence            345577899999999999999999  89999999976322111100       001233444567899999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCC------------------cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          233 RYLASGGLDRHIHLWDTRI------------------QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      .+||+|+.|+.|.||....                  .+.+..+.+|...|..++|+|++.+|++++.|++|.||+..+.
T Consensus        82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence            9999999999999998662                  1356788899999999999999999999999999999999999


Q ss_pred             ceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeE-Ee------cCCCCeeEEEeecCCeEE-EE----
Q 010296          295 AYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLV-FR------APASSLECCCFISNDEFL-SG----  361 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~-~~------~~~~~v~~~~~~~~~~~~-~~----  361 (513)
                      +.+..+.+|.+.|..+.|.|-|+++ +-+.|++|++|.+..-.... ..      .....+..+.|+|+|.++ +.    
T Consensus       162 ~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n  241 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN  241 (942)
T ss_pred             eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence            9999999999999999999988655 78899999999976644332 11      223457789999999754 32    


Q ss_pred             eCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC-----CC-
Q 010296          362 SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG-----SD-  435 (513)
Q Consensus       362 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~-  435 (513)
                      +.-.++.|.+..+.+.-..+                                     .+|..++.++.|+|.     .+ 
T Consensus       242 ~~~~~~~IieR~tWk~~~~L-------------------------------------vGH~~p~evvrFnP~lfe~~~~n  284 (942)
T KOG0973|consen  242 GGKSTIAIIERGTWKVDKDL-------------------------------------VGHSAPVEVVRFNPKLFERNNKN  284 (942)
T ss_pred             CCcceeEEEecCCceeeeee-------------------------------------ecCCCceEEEEeChHHhcccccc
Confidence            22345677776665555444                                     556666999999871     11 


Q ss_pred             -----------EEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          436 -----------LAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       436 -----------~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                                 .+|+|+.|++|-||..... +++.....+ ....|..++|+|||-.|+++ +.||+|.+..+...
T Consensus       285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~vi~~l-f~~SI~DmsWspdG~~Lfac-S~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFVIHNL-FNKSIVDMSWSPDGFSLFAC-SLDGTVALIHFEEK  357 (942)
T ss_pred             CCccCCCcceEEEEEecCCccEEEEecCCC-Cchhhhhhh-hcCceeeeeEcCCCCeEEEE-ecCCeEEEEEcchH
Confidence                       6889999999999999665 343333332 36779999999999999999 99999999977543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=4e-31  Score=229.16  Aligned_cols=252  Identities=19%  Similarity=0.331  Sum_probs=205.4

Q ss_pred             CCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE
Q 010296          146 PEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA  225 (513)
Q Consensus       146 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (513)
                      ....+..+++.+|..+|..|.||||.++|++|+.+..+.+||+.++.....+                  ..+|...+.+
T Consensus       256 d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y------------------~~~~~~S~~s  317 (519)
T KOG0293|consen  256 DVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY------------------PSGLGFSVSS  317 (519)
T ss_pred             CcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc------------------ccCcCCCcce
Confidence            3336668899999999999999999999999999999999999999987755                  2345688999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeeccc
Q 010296          226 LAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQ  304 (513)
Q Consensus       226 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  304 (513)
                      ++|.|||..+++|+.|++|..||+. |.......+ ....|.++++++||+++++.+.|..|++++..+......+. ..
T Consensus       318 c~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~  395 (519)
T KOG0293|consen  318 CAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EE  395 (519)
T ss_pred             eEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-cc
Confidence            9999999999999999999999986 444555554 23569999999999999999999999999998766554433 56


Q ss_pred             CCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCC--eeEEEeecCC--eEEEEeCCCCEEEEecCCCCee
Q 010296          305 SEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASS--LECCCFISND--EFLSGSDDGSIELWSLLRKKPV  378 (513)
Q Consensus       305 ~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~--v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~  378 (513)
                      .+|++++.+.+++++ +.-.+..+++||+.....+ .+.+|...  +..-||-..+  .+++|+.|+.|+||+..+++++
T Consensus       396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll  475 (519)
T KOG0293|consen  396 QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL  475 (519)
T ss_pred             CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee
Confidence            789999999999877 5557999999999966554 45555543  2233443322  3779999999999999999999


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCC
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~  454 (513)
                      ..+.                                     +|...|++++|+|.. .+||+++.||+||||-....
T Consensus       476 ~~Ls-------------------------------------GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  476 AVLS-------------------------------------GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             Eeec-------------------------------------CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            9984                                     455569999999954 68999999999999987643

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=2.4e-29  Score=241.06  Aligned_cols=277  Identities=17%  Similarity=0.218  Sum_probs=208.8

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCC-CCCCCCCCCCcccEEEEEEcC-CCCEE
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGA-KDPQGRATKQSKHILALAVSS-DGRYL  235 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l  235 (513)
                      |-..|....+++++..+++++.+.....|+...+..+..+       ...+. ......+.+|...|++++|+| ++.+|
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~-------~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L   91 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKH-------TDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL   91 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeec-------cccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence            4456777778888888899999999999987765432211       00000 011123578999999999999 88999


Q ss_pred             EEEeCCCcEEEEeCCCc-------ceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296          236 ASGGLDRHIHLWDTRIQ-------EHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV  307 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  307 (513)
                      ++|+.|++|++||+.++       .++..+.+|...|.+++|+|++ ++|++++.|++|+|||+.+++.+..+.+|...|
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V  171 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQI  171 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence            99999999999999765       3567788999999999999985 689999999999999999999999999999999


Q ss_pred             EEEEeeCCCe-EEEEeCCCcEEEEecCCCeee-EEecCCCC-eeEEEeecCC-eEEEEe----CCCCEEEEecCCCC-ee
Q 010296          308 LTIDCLRKER-VLTVGRDRSMQLWKVPEESRL-VFRAPASS-LECCCFISND-EFLSGS----DDGSIELWSLLRKK-PV  378 (513)
Q Consensus       308 ~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~-v~~~~~~~~~-~~~~~~----~dg~i~iwd~~~~~-~~  378 (513)
                      .+++|+|++. +++++.|+.|++||++++..+ .+..|... +..+.|.+++ .+++++    .|+.|++||+++.. ++
T Consensus       172 ~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~  251 (493)
T PTZ00421        172 TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY  251 (493)
T ss_pred             EEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence            9999999885 558889999999999988765 44555543 3456777765 455443    47999999998754 33


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCcEEEEEeCCCCcc
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGSVRLWAIESETKD  457 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~  457 (513)
                      .......                                    ...+....|++++++|++|+ .||.|++|++.++. .
T Consensus       252 ~~~~~d~------------------------------------~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~-~  294 (493)
T PTZ00421        252 STVDLDQ------------------------------------SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER-L  294 (493)
T ss_pred             eEeccCC------------------------------------CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc-e
Confidence            3222111                                    11266678999999999887 59999999999872 2


Q ss_pred             eeeeeecCcccEEEEEEeecCC
Q 010296          458 IQPLYNLPLVGFVNSLAFAKSG  479 (513)
Q Consensus       458 ~~~~~~~~~~~~v~~v~~sp~~  479 (513)
                      +. ...+....++..++|.|.-
T Consensus       295 ~~-~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        295 TF-CSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             EE-EeeccCCCCCcceEecccc
Confidence            22 2333355678888888853

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3e-30  Score=237.88  Aligned_cols=254  Identities=24%  Similarity=0.333  Sum_probs=220.9

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCC-Ccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATK-QSK  221 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  221 (513)
                      +|+...........-+...|+++.|+++|.+|++|..+|.|.|||....+.+..+                   .. |..
T Consensus       201 lW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~-------------------~~~h~~  261 (484)
T KOG0305|consen  201 LWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL-------------------RGSHAS  261 (484)
T ss_pred             EEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc-------------------cCCcCc
Confidence            3555444433333344899999999999999999999999999999988877654                   44 899


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeee-ccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA-FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      .|-+++|.  +..+.+|+.++.|..+|++..+.... +.+|...|..++|++++.+|++|+.|+.+.|||.....++..+
T Consensus       262 rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~  339 (484)
T KOG0305|consen  262 RVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF  339 (484)
T ss_pred             eeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE
Confidence            99999998  77899999999999999998876555 8889999999999999999999999999999999888889999


Q ss_pred             ecccCCeEEEEeeC--CCeEEEEe--CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE--EEeCCCCEEEEecC
Q 010296          301 FGHQSEVLTIDCLR--KERVLTVG--RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL--SGSDDGSIELWSLL  373 (513)
Q Consensus       301 ~~~~~~v~~~~~~~--~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~--~~~~dg~i~iwd~~  373 (513)
                      ..|...|.+++|+|  .+.|++|+  .|+.|++||..++..+........|..+.|++... |+  .|..++.|.||++.
T Consensus       340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p  419 (484)
T KOG0305|consen  340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP  419 (484)
T ss_pred             eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence            99999999999999  45677655  69999999999999998888889999999999874 55  45678899999999


Q ss_pred             CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296          374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~  453 (513)
                      +.+.+..+                                     .+|...|..++++|+|..+++|+.|.++++|++-.
T Consensus       420 s~~~~~~l-------------------------------------~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  420 SMKLVAEL-------------------------------------LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             ccceeeee-------------------------------------cCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            98887777                                     55666699999999999999999999999999976


Q ss_pred             C
Q 010296          454 E  454 (513)
Q Consensus       454 ~  454 (513)
                      .
T Consensus       463 ~  463 (484)
T KOG0305|consen  463 E  463 (484)
T ss_pred             C
Confidence            4

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.9e-30  Score=226.48  Aligned_cols=253  Identities=19%  Similarity=0.303  Sum_probs=214.9

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI  223 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (513)
                      +........+.+......|+++.|..||++||+|...|.|+|||+.+...+..                   +..|..+|
T Consensus        53 y~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~-------------------~~ah~apv  113 (487)
T KOG0310|consen   53 YSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ-------------------LYAHQAPV  113 (487)
T ss_pred             EecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH-------------------HhhccCce
Confidence            34444555666777889999999999999999999999999999776555543                   37899999


Q ss_pred             EEEEEcCC-CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCC-ceeEEe
Q 010296          224 LALAVSSD-GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDR-AYISTL  300 (513)
Q Consensus       224 ~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~  300 (513)
                      ..+.|+|+ +..|++|+.|+.+++||+.+......+.+|+..|.|.+|+|... .++||+.||.|++||++.. ..+..+
T Consensus       114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el  193 (487)
T KOG0310|consen  114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL  193 (487)
T ss_pred             eEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence            99999995 55778899999999999999988778999999999999999654 6889999999999999987 556666


Q ss_pred             ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe
Q 010296          301 FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~  377 (513)
                      . |..+|-.+.+.|.|.+++......|++||+.++...  ....|...|+|+.+..++. |++++-|+.|++||+.+.+.
T Consensus       194 n-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv  272 (487)
T KOG0310|consen  194 N-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV  272 (487)
T ss_pred             c-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE
Confidence            5 999999999999988887777889999999965544  3344899999999998875 99999999999999999888


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      +..+....+                                      |.+++.+|+++.++.|..+|.+.+-+....
T Consensus       273 v~s~~~~~p--------------------------------------vLsiavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  273 VHSWKYPGP--------------------------------------VLSIAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             EEeeecccc--------------------------------------eeeEEecCCCceEEEecccceeeeehhhcc
Confidence            888765433                                      999999999999999999998887754443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=4.9e-29  Score=258.68  Aligned_cols=250  Identities=19%  Similarity=0.315  Sum_probs=205.9

Q ss_pred             cCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCEE
Q 010296          158 HRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRYL  235 (513)
Q Consensus       158 h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l  235 (513)
                      +...|.+++|+| .+.+|++++.||+|+|||+.++..+..+                   .+|...|++++|+| ++.+|
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-------------------~~H~~~V~~l~~~p~~~~~L  591 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-------------------KEHEKRVWSIDYSSADPTLL  591 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-------------------cCCCCCEEEEEEcCCCCCEE
Confidence            456899999987 4789999999999999999988766543                   67999999999997 78999


Q ss_pred             EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEe-cCCCeEEEEeCCCcEEEEeCCCCc-eeEEeecccCCeEEEEee
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRA-YISTLFGHQSEVLTIDCL  313 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~  313 (513)
                      ++|+.||+|++||+.++..+..+..+ ..|.++.|+ +++.+|++|+.||.|++||+++.. .+..+.+|...|.++.|.
T Consensus       592 ~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~  670 (793)
T PLN00181        592 ASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV  670 (793)
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe
Confidence            99999999999999999988888754 689999995 568999999999999999998765 466778899999999998


Q ss_pred             CCCeEEEEeCCCcEEEEecCCC-------eeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296          314 RKERVLTVGRDRSMQLWKVPEE-------SRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       314 ~~~~~~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      +...+++++.|++|++||+...       ....+.+|...+.+++|++++. |++|+.|+.|++|+.....++..+....
T Consensus       671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~  750 (793)
T PLN00181        671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT  750 (793)
T ss_pred             CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence            7778889999999999999743       2235677888899999999875 7799999999999988776665543221


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      .....                        ......+...|.+++|+|++.+|++|+.+|.|+||++
T Consensus       751 ~~~~~------------------------~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        751 IDPVS------------------------GLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCccc------------------------ccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            11000                        0000233456999999999999999999999999996

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.6e-29  Score=233.03  Aligned_cols=276  Identities=21%  Similarity=0.308  Sum_probs=228.3

Q ss_pred             EEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCC
Q 010296          163 TAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDR  242 (513)
Q Consensus       163 ~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  242 (513)
                      +-+.|+ ..+.||+|. ...|++|+..++......                   ..+...|+++.|+++|.+|++|..+|
T Consensus       181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~-------------------~~~~~~vtSv~ws~~G~~LavG~~~g  239 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELC-------------------SFGEELVTSVKWSPDGSHLAVGTSDG  239 (484)
T ss_pred             hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeE-------------------ecCCCceEEEEECCCCCEEEEeecCC
Confidence            345677 345666665 457999999988854422                   22377899999999999999999999


Q ss_pred             cEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE-eecccCCeEEEEeeCCC-eEE
Q 010296          243 HIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST-LFGHQSEVLTIDCLRKE-RVL  319 (513)
Q Consensus       243 ~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~  319 (513)
                      .|.|||..+.+.+..+.+ |...|.+++|.  +..+.+|+.++.|..+|++..+.... +.+|...|..+.|++++ .++
T Consensus       240 ~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lA  317 (484)
T KOG0305|consen  240 TVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLA  317 (484)
T ss_pred             eEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeec
Confidence            999999999999999998 99999999998  56789999999999999998776554 88899999999999998 555


Q ss_pred             EEeCCCcEEEEecCCCee-eEEecCCCCeeEEEeecCC--eEEEE--eCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296          320 TVGRDRSMQLWKVPEESR-LVFRAPASSLECCCFISND--EFLSG--SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF  394 (513)
Q Consensus       320 ~~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~--~~~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
                      +++.|+.+.|||...... ..+..|...|..++|+|-.  .||+|  +.|++|++||..+++.+..+.....        
T Consensus       318 SGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ--------  389 (484)
T KOG0305|consen  318 SGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ--------  389 (484)
T ss_pred             cCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc--------
Confidence            899999999999955444 4788999999999999964  47754  4799999999999998887754333        


Q ss_pred             ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe--cCCCcEEEEEeCCCCcceeeeeecCcccEEEE
Q 010296          395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG--AGNGSVRLWAIESETKDIQPLYNLPLVGFVNS  472 (513)
Q Consensus       395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g--~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~  472 (513)
                                                    |++|.|++..+-|+++  ..++.|.||++.+. +.+..+..  |...|..
T Consensus       390 ------------------------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~g--H~~RVl~  436 (484)
T KOG0305|consen  390 ------------------------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLG--HTSRVLY  436 (484)
T ss_pred             ------------------------------eeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecC--CcceeEE
Confidence                                          9999999998766664  35678999999986 44444444  8999999


Q ss_pred             EEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296          473 LAFAKSGQFLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       473 v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                      +++||||..+++| +.|.++++|++-...+.
T Consensus       437 la~SPdg~~i~t~-a~DETlrfw~~f~~~~~  466 (484)
T KOG0305|consen  437 LALSPDGETIVTG-AADETLRFWNLFDERPK  466 (484)
T ss_pred             EEECCCCCEEEEe-cccCcEEeccccCCCCc
Confidence            9999999999999 78889999998775433

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=9.7e-29  Score=237.73  Aligned_cols=247  Identities=17%  Similarity=0.199  Sum_probs=189.7

Q ss_pred             EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCcc--
Q 010296          177 ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GRYLASGGLDRHIHLWDTRIQE--  253 (513)
Q Consensus       177 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~--  253 (513)
                      |+.++.|++|+......+.                   .+.+|...|.+++|+|+ +.+|++|+.|++|+||++.++.  
T Consensus        50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~  110 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES  110 (568)
T ss_pred             CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            5567888888876544333                   34789999999999996 7899999999999999997642  


Q ss_pred             ------eeeeccCcCCCeEEEEEecCCCeE-EEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCC
Q 010296          254 ------HIQAFPGHRGPVSCLTFRQGTSEL-FSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDR  325 (513)
Q Consensus       254 ------~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~  325 (513)
                            ++..+.+|...|.+++|+|++..+ ++++.|++|+|||+++++.+..+. |...|.+++|+++|.++ +++.|+
T Consensus       111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~  189 (568)
T PTZ00420        111 VKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGK  189 (568)
T ss_pred             ccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCC
Confidence                  344678899999999999998764 689999999999999998777775 66789999999998666 567899


Q ss_pred             cEEEEecCCCeee-EEecCCCCeeEE-----EeecCC-eEEEEeCCC----CEEEEecCC-CCeeEEeecCCCcccCCCC
Q 010296          326 SMQLWKVPEESRL-VFRAPASSLECC-----CFISND-EFLSGSDDG----SIELWSLLR-KKPVYIVKNAHPLLDGLKN  393 (513)
Q Consensus       326 ~i~iwd~~~~~~~-~~~~~~~~v~~~-----~~~~~~-~~~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~  393 (513)
                      .|++||++++..+ .+..|...+.+.     .|++++ .+++++.++    .|+|||++. .+++..+....        
T Consensus       190 ~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~--------  261 (568)
T PTZ00420        190 HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN--------  261 (568)
T ss_pred             EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC--------
Confidence            9999999988766 456676654332     234555 477777664    799999995 56666553221        


Q ss_pred             cccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEE
Q 010296          394 FEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSL  473 (513)
Q Consensus       394 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v  473 (513)
                                                 +.+.+......++|.++++|+.|+.|++|++..+  .+..+..+.+..++.++
T Consensus       262 ---------------------------~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~--~~~~l~~~~s~~p~~g~  312 (568)
T PTZ00420        262 ---------------------------ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG--SIRKVNEYKSCSPFRSF  312 (568)
T ss_pred             ---------------------------CccceEEeeeCCCCCEEEEEECCCeEEEEEccCC--cEEeecccccCCCccce
Confidence                                       1122444455667899999999999999999876  35556666677889999


Q ss_pred             EeecCCC
Q 010296          474 AFAKSGQ  480 (513)
Q Consensus       474 ~~sp~~~  480 (513)
                      +|.|...
T Consensus       313 ~f~Pkr~  319 (568)
T PTZ00420        313 GFLPKQI  319 (568)
T ss_pred             EEccccc
Confidence            9999744

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=7.1e-30  Score=219.28  Aligned_cols=250  Identities=21%  Similarity=0.374  Sum_probs=209.9

Q ss_pred             cccchhhhhccCCCeEEEEECCCC---CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE
Q 010296          148 ATDEFRVLLKHRQSVTAVALSEDD---SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL  224 (513)
Q Consensus       148 ~~~~~~~~~~h~~~V~~~~~s~~~---~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  224 (513)
                      .++...++.+|.++|.+++|.-..   ..|++++.|.++++|.++.+......               .....+|...|-
T Consensus       133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~---------------~~~~~GHk~~V~  197 (423)
T KOG0313|consen  133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA---------------LKVCRGHKRSVD  197 (423)
T ss_pred             CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH---------------HhHhccccccee
Confidence            456778889999999988885433   35999999999999999887654322               112349999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCC-------------------------cceeeeccCcCCCeEEEEEecCCCeEEE
Q 010296          225 ALAVSSDGRYLASGGLDRHIHLWDTRI-------------------------QEHIQAFPGHRGPVSCLTFRQGTSELFS  279 (513)
Q Consensus       225 ~~~~s~~~~~l~s~~~dg~i~vwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~  279 (513)
                      ++...++|..+++|+.|..|.||+..+                         +.++..+.+|..+|.++.|++ ...+++
T Consensus       198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS  276 (423)
T KOG0313|consen  198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYS  276 (423)
T ss_pred             EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEe
Confidence            999999999999999999999999321                         234667889999999999998 678999


Q ss_pred             EeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeE-EEEeCCCcEEEEecCCCee----eEEecCCCCeeEEEeec
Q 010296          280 GSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERV-LTVGRDRSMQLWKVPEESR----LVFRAPASSLECCCFIS  354 (513)
Q Consensus       280 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~~~~~~  354 (513)
                      ++.|.+|+.||+.++..+..+. ....++++.++|...+ ++++.|..|++||.+++.-    ..+.+|...|.++.|+|
T Consensus       277 ~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp  355 (423)
T KOG0313|consen  277 VSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP  355 (423)
T ss_pred             ecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence            9999999999999999988876 5667899999997655 5888999999999987642    36889999999999999


Q ss_pred             CC--eEEEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe
Q 010296          355 ND--EFLSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC  431 (513)
Q Consensus       355 ~~--~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  431 (513)
                      ..  +|++|+.|+++++||+++.+ +++.+.                                     +|...|.++.|.
T Consensus       356 ~~~~~~~S~S~D~t~klWDvRS~k~plydI~-------------------------------------~h~DKvl~vdW~  398 (423)
T KOG0313|consen  356 TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA-------------------------------------GHNDKVLSVDWN  398 (423)
T ss_pred             CCceEEEEEecCCeEEEEEeccCCCcceeec-------------------------------------cCCceEEEEecc
Confidence            87  38899999999999999987 888884                                     444559999997


Q ss_pred             cCCCEEEEecCCCcEEEEEeC
Q 010296          432 GGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       432 ~~~~~l~~g~~dg~v~vwd~~  452 (513)
                      . +.+|++|+.|.+|+|+.-.
T Consensus       399 ~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  399 E-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             C-CceEEeccCcceEEEeccc
Confidence            4 5699999999999998754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1e-28  Score=207.45  Aligned_cols=300  Identities=17%  Similarity=0.244  Sum_probs=217.6

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      .+..|++|.+.|++++|+.||++|+|++.|++|+||++........     ..++          ..-..+..+.+.|+|
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH-----r~~R----------~nve~dhpT~V~Fap  142 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH-----RCIR----------QNVEYDHPTRVVFAP  142 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh-----hHhh----------ccccCCCceEEEECC
Confidence            3567899999999999999999999999999999999987443211     0011          111223478899999


Q ss_pred             CCCEEEE-EeCCCcEEEEeCCCc---ceee---------eccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee
Q 010296          231 DGRYLAS-GGLDRHIHLWDTRIQ---EHIQ---------AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI  297 (513)
Q Consensus       231 ~~~~l~s-~~~dg~i~vwd~~~~---~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  297 (513)
                      |.+-++. +-...++++|.+...   ....         .-+.|.-.|..+-...++.+|++++.|..|.+|+++ |+.+
T Consensus       143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L  221 (420)
T KOG2096|consen  143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL  221 (420)
T ss_pred             CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence            9876554 445568999976422   1111         112366677778888889999999999999999998 8888


Q ss_pred             EEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCC---C------eeeEEecCCCCeeEEEeecCCe-EEEEeCCCC
Q 010296          298 STLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPE---E------SRLVFRAPASSLECCCFISNDE-FLSGSDDGS  366 (513)
Q Consensus       298 ~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~---~------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~  366 (513)
                      ..+......-+..+.+|+|+|+ +++..--|++|.+--   +      +...+.+|.+.|..++|+++.. +++.+.||+
T Consensus       222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~  301 (420)
T KOG2096|consen  222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK  301 (420)
T ss_pred             eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc
Confidence            8887777777888999999888 677788999998732   1      1236789999999999999985 999999999


Q ss_pred             EEEEecCCC----CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC
Q 010296          367 IELWSLLRK----KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG  442 (513)
Q Consensus       367 i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  442 (513)
                      ++|||+.-.    +-.+.++....                              ......+....+.+||.|+.||.+..
T Consensus       302 wriwdtdVrY~~~qDpk~Lk~g~~------------------------------pl~aag~~p~RL~lsP~g~~lA~s~g  351 (420)
T KOG2096|consen  302 WRIWDTDVRYEAGQDPKILKEGSA------------------------------PLHAAGSEPVRLELSPSGDSLAVSFG  351 (420)
T ss_pred             EEEeeccceEecCCCchHhhcCCc------------------------------chhhcCCCceEEEeCCCCcEEEeecC
Confidence            999997531    11111111000                              00111122448999999999988765


Q ss_pred             CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          443 NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       443 dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      . .|++|..+++ +....+.. .|.+.|.+++|+++|++++++ | |..+++....++-
T Consensus       352 s-~l~~~~se~g-~~~~~~e~-~h~~~Is~is~~~~g~~~atc-G-dr~vrv~~ntpg~  405 (420)
T KOG2096|consen  352 S-DLKVFASEDG-KDYPELED-IHSTTISSISYSSDGKYIATC-G-DRYVRVIRNTPGW  405 (420)
T ss_pred             C-ceEEEEcccC-ccchhHHH-hhcCceeeEEecCCCcEEeee-c-ceeeeeecCCCch
Confidence            4 7999999887 33333332 388999999999999999998 4 4467777655553

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=2.4e-29  Score=241.22  Aligned_cols=251  Identities=24%  Similarity=0.430  Sum_probs=219.1

Q ss_pred             cccCCCcccchhh-hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCc
Q 010296          142 RVQKPEATDEFRV-LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQS  220 (513)
Q Consensus       142 ~~~~~~~~~~~~~-~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (513)
                      .+|+......+.. +.+|.+.|.+++|...+.+|++|+.|.+++|||+.++.+...+                   .+|.
T Consensus       231 ~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-------------------~gh~  291 (537)
T KOG0274|consen  231 HLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL-------------------QGHT  291 (537)
T ss_pred             EEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe-------------------cCCC
Confidence            4566677777777 9999999999999988899999999999999999999999866                   6899


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296          221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      ..|.++...  ..++++|+.|.+|++|++.++..+..+.+|.++|.++.++  +.++++|+.|++|++|++.+++++..+
T Consensus       292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl  367 (537)
T KOG0274|consen  292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL  367 (537)
T ss_pred             ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee
Confidence            999999886  4578889999999999999999999999999999999998  789999999999999999999999999


Q ss_pred             ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCC-eee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCee
Q 010296          301 FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEE-SRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPV  378 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  378 (513)
                      .+|...|+++.+.+...+++++.|++|++||+.+. +++ .+..|...+..+.+ .+..+++++.|++|++||..+++++
T Consensus       368 ~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~-~~~~Lvs~~aD~~Ik~WD~~~~~~~  446 (537)
T KOG0274|consen  368 SGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL-RDNFLVSSSADGTIKLWDAEEGECL  446 (537)
T ss_pred             cCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc-ccceeEeccccccEEEeecccCcee
Confidence            99999999998876688899999999999999998 555 56666666644443 2345889999999999999999999


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .++...                                    +...|+.+++.  ...+++++.+|.+++||++++
T Consensus       447 ~~~~~~------------------------------------~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~  484 (537)
T KOG0274|consen  447 RTLEGR------------------------------------HVGGVSALALG--KEEILCSSDDGSVKLWDLRSG  484 (537)
T ss_pred             eeeccC------------------------------------CcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence            998753                                    22337777776  458999999999999999998

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=207.17  Aligned_cols=276  Identities=18%  Similarity=0.295  Sum_probs=216.3

Q ss_pred             EEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc
Q 010296          174 GFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE  253 (513)
Q Consensus       174 l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~  253 (513)
                      |++|+....|.-+++.-.. ...      .-.....-.|...+..|..+|++++.+  +.++|+|+.|-+|+|||+....
T Consensus         4 iIvGtYE~~i~Gf~l~~~~-~~~------~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~   74 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEP-KGC------TDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK   74 (362)
T ss_pred             EEEeeeeeEEEEEEeccCc-ccc------ccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence            5677777766666654322 000      000000112344678899999999997  8999999999999999999999


Q ss_pred             eeeeccCcCCCeEEEEEecCCC--eEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEE
Q 010296          254 HIQAFPGHRGPVSCLTFRQGTS--ELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLW  330 (513)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iw  330 (513)
                      .+..+-.|.+.|+++.|.++-.  .|++|+.||.|.+|+...-.++..+++|.+.|+.++++|.++++ +.+.|+.+++|
T Consensus        75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W  154 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW  154 (362)
T ss_pred             hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence            9999999999999999998765  89999999999999999999999999999999999999999887 99999999999


Q ss_pred             ecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCC
Q 010296          331 KVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENG  409 (513)
Q Consensus       331 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  409 (513)
                      |+-.++.-...........+.|+|.|. |+.+.. ..|-||.+.+.+....+....                        
T Consensus       155 NLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~~~------------------------  209 (362)
T KOG0294|consen  155 NLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIENPK------------------------  209 (362)
T ss_pred             hhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhhccc------------------------
Confidence            998887665444445555699999996 655554 458999988877665554321                        


Q ss_pred             CCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEe--ecCCCEEEEEec
Q 010296          410 NLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAF--AKSGQFLIAGVG  487 (513)
Q Consensus       410 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~--sp~~~~l~~~~~  487 (513)
                                    .+.|+.|- ++..|++|+.|+.|.+||..+. .++..+..  |...|.++.+  .|.+.+|+++ +
T Consensus       210 --------------r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~A--H~~RVK~i~~~~~~~~~~lvTa-S  270 (362)
T KOG0294|consen  210 --------------RILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLA--HENRVKDIASYTNPEHEYLVTA-S  270 (362)
T ss_pred             --------------cceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeec--chhheeeeEEEecCCceEEEEe-c
Confidence                          15566664 4568999999999999999885 44444433  8899999985  3667888888 9


Q ss_pred             CCCcccccccCCCcc
Q 010296          488 QEPRLGRWGHLPAAR  502 (513)
Q Consensus       488 ~dg~v~~W~~~~~~~  502 (513)
                      .||.|++||+....+
T Consensus       271 SDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  271 SDGFIKVWDIDMETK  285 (362)
T ss_pred             cCceEEEEEcccccc
Confidence            999999999987743

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=9.7e-28  Score=202.09  Aligned_cols=253  Identities=16%  Similarity=0.248  Sum_probs=207.1

Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCC
Q 010296          217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDR  294 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~  294 (513)
                      ......|.+|.|+++|.+|++++.|.+|+|||..+++.+.++..+...|..++|......++.++.  |.+|+..++.+.
T Consensus        11 ~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN   90 (311)
T KOG1446|consen   11 RETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN   90 (311)
T ss_pred             ccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence            335677999999999999999999999999999999999999988889999999887777777766  889999999999


Q ss_pred             ceeEEeecccCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296          295 AYISTLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL  372 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~  372 (513)
                      +.++.+.||...|++++.+|- ..+++++.|++|++||++...+...... ..-..++|.|.|. ||++.....|++||+
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~~~~IkLyD~  169 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANGSELIKLYDL  169 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecCCCeEEEEEe
Confidence            999999999999999999994 5888999999999999997766543322 2334578999997 556666669999999


Q ss_pred             CCC--CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          373 LRK--KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       373 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      +.-  .|..++....                                  ......+.|.|||+|++|+.+...+.+++.|
T Consensus       170 Rs~dkgPF~tf~i~~----------------------------------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD  215 (311)
T KOG1446|consen  170 RSFDKGPFTTFSITD----------------------------------NDEAEWTDLEFSPDGKSILLSTNASFIYLLD  215 (311)
T ss_pred             cccCCCCceeEccCC----------------------------------CCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence            864  4555554321                                  1122389999999999999999999999999


Q ss_pred             eCCCCcceeeeeecCccc-EEEEEEeecCCCEEEEEecCCCcccccccCCCcccceE
Q 010296          451 IESETKDIQPLYNLPLVG-FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVL  506 (513)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~  506 (513)
                      .-++ .....+...+..+ .-....|+||++++++| ++||+|.+|++..+.+...+
T Consensus       216 Af~G-~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g-s~dg~i~vw~~~tg~~v~~~  270 (311)
T KOG1446|consen  216 AFDG-TVKSTFSGYPNAGNLPLSATFTPDSKFVLSG-SDDGTIHVWNLETGKKVAVL  270 (311)
T ss_pred             ccCC-cEeeeEeeccCCCCcceeEEECCCCcEEEEe-cCCCcEEEEEcCCCcEeeEe
Confidence            9998 3455555544333 22567899999999999 99999999999887765544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.4e-29  Score=204.75  Aligned_cols=240  Identities=19%  Similarity=0.309  Sum_probs=197.5

Q ss_pred             cCCCeEEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCEE
Q 010296          158 HRQSVTAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRYL  235 (513)
Q Consensus       158 h~~~V~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l  235 (513)
                      -.+.++.++|+++ .+.+++++.||+++|||+....                  .|...+..|...|.++.|++ .+..+
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~  120 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS------------------KPIHKFKEHKREVYSVDWNTVRRRIF  120 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCC------------------cchhHHHhhhhheEEeccccccceeE
Confidence            4678999999996 4577799999999999954322                  13335678999999999999 56678


Q ss_pred             EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  314 (513)
                      ++++.|++|++|+....+.++++.+|...|...+|+|. .+.+++++.|+++++||++..-....+..|...+.++.|+.
T Consensus       121 ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~k  200 (311)
T KOG0277|consen  121 LTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSK  200 (311)
T ss_pred             EeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccc
Confidence            88899999999999999999999999999999999995 56788999999999999987544445888999999999987


Q ss_pred             C--CeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296          315 K--ERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLL  388 (513)
Q Consensus       315 ~--~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  388 (513)
                      -  ..+++++.|+.|+.||++.-+..  .+.+|.-.|..+.|+|...  |++++.|-+++|||...+.......      
T Consensus       201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~------  274 (311)
T KOG0277|consen  201 YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV------  274 (311)
T ss_pred             cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh------
Confidence            3  35669999999999999876543  5678888999999999864  7899999999999987554332222      


Q ss_pred             cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEe
Q 010296          389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~  451 (513)
                                                    ..|...+..+.||+ ++.++|+++.|+.++||+-
T Consensus       275 ------------------------------~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  275 ------------------------------DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ------------------------------hccceEEeccccccccCceeeecccccceeeecc
Confidence                                          22334488899987 5579999999999999983

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=2e-28  Score=200.77  Aligned_cols=234  Identities=19%  Similarity=0.303  Sum_probs=204.0

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      +.+|..+++.|.|+.+|.+|++|+.|.++.||-..+|+.+.++.+|.+.|+|+..+.+.++|++|+.|.++++||+.+|+
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence            56899999999999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             eeEEeecccCCeEEEEeeCCCeEEEEeC------CCcEEEEecCCC-------e-eeEEecCCCCeeEEEeecCCe-EEE
Q 010296          296 YISTLFGHQSEVLTIDCLRKERVLTVGR------DRSMQLWKVPEE-------S-RLVFRAPASSLECCCFISNDE-FLS  360 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------d~~i~iwd~~~~-------~-~~~~~~~~~~v~~~~~~~~~~-~~~  360 (513)
                      ++..+. ...+|..+.|++++.++..+.      .+.|.+++++..       . ......+.+.++.+.|.|-+. +++
T Consensus        86 ~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~  164 (327)
T KOG0643|consen   86 QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA  164 (327)
T ss_pred             EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence            999887 678899999999997775554      467899999732       3 346677788999999999886 779


Q ss_pred             EeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe
Q 010296          361 GSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG  440 (513)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g  440 (513)
                      |..+|.|.+||+++++.+....                                    ..|...|+.++++++..+++|+
T Consensus       165 Ghe~G~is~~da~~g~~~v~s~------------------------------------~~h~~~Ind~q~s~d~T~FiT~  208 (327)
T KOG0643|consen  165 GHEDGSISIYDARTGKELVDSD------------------------------------EEHSSKINDLQFSRDRTYFITG  208 (327)
T ss_pred             ecCCCcEEEEEcccCceeeech------------------------------------hhhccccccccccCCcceEEec
Confidence            9999999999999987655443                                    2333449999999999999999


Q ss_pred             cCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCC
Q 010296          441 AGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEP  490 (513)
Q Consensus       441 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg  490 (513)
                      +.|.+-++||+.+.    ..+..+....||++.+++|...+++.++|++.
T Consensus       209 s~Dttakl~D~~tl----~v~Kty~te~PvN~aaisP~~d~VilgGGqeA  254 (327)
T KOG0643|consen  209 SKDTTAKLVDVRTL----EVLKTYTTERPVNTAAISPLLDHVILGGGQEA  254 (327)
T ss_pred             ccCccceeeeccce----eeEEEeeecccccceecccccceEEecCCcee
Confidence            99999999999876    44455556789999999999999998877763

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=6.9e-30  Score=214.96  Aligned_cols=242  Identities=21%  Similarity=0.319  Sum_probs=212.8

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR  233 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  233 (513)
                      .+.-|..+|.|+.|+.|..+||+|+.||.|+||.+.+|.+++.+                  ...|...|+|+.||.|+.
T Consensus       258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF------------------drAHtkGvt~l~FSrD~S  319 (508)
T KOG0275|consen  258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF------------------DRAHTKGVTCLSFSRDNS  319 (508)
T ss_pred             ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh------------------hhhhccCeeEEEEccCcc
Confidence            34468899999999999999999999999999999999999876                  358999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec--ccCCeEEEE
Q 010296          234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG--HQSEVLTID  311 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~  311 (513)
                      .+++++.|.+++|.-+.+|+++..+++|...|+...|.++|.++++++.||+|++|+..+..|+.+++.  ...+|+++.
T Consensus       320 qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~  399 (508)
T KOG0275|consen  320 QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVI  399 (508)
T ss_pred             hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEE
Confidence            999999999999999999999999999999999999999999999999999999999999999988864  345788888


Q ss_pred             eeCCC--eEEEEeCCCcEEEEecCCCeeeEEecC---CCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296          312 CLRKE--RVLTVGRDRSMQLWKVPEESRLVFRAP---ASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       312 ~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      ..|.+  .+++|...++|++.++...-...+...   .+...+++.+|.|. +.+.+.|+.++.|.+.+|+.-.++..+.
T Consensus       400 ~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE  479 (508)
T KOG0275|consen  400 LLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE  479 (508)
T ss_pred             EcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence            88854  788999999999999986655544332   34566788899997 5688999999999999999888875443


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      .                                     -+..++-+|..++||+-+.||.+++|.
T Consensus       480 k-------------------------------------dvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  480 K-------------------------------------DVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             c-------------------------------------cccccccCcccchhhhhcccchhhhcC
Confidence            3                                     278889999999999999999999995

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=8.6e-28  Score=230.42  Aligned_cols=246  Identities=14%  Similarity=0.181  Sum_probs=191.7

Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCccee-------------eeccCcCCCeEEEEEec-CCCeEEEEeCCC
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-------------QAFPGHRGPVSCLTFRQ-GTSELFSGSFDR  284 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  284 (513)
                      +...|.....++++..+++++.+..+..|+...+..+             ..+.+|.+.|++++|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            3445666667777666777777777777775443322             23678999999999999 788999999999


Q ss_pred             cEEEEeCCCC-------ceeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeec
Q 010296          285 TVKIWNAEDR-------AYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFIS  354 (513)
Q Consensus       285 ~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~  354 (513)
                      +|++||+.++       ..+..+.+|...|.+++|+|.+  .+++++.|++|++||+.++... .+..|...|.+++|+|
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp  178 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL  178 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence            9999999764       3467788999999999999964  6779999999999999987765 5567888999999999


Q ss_pred             CCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC
Q 010296          355 NDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG  433 (513)
Q Consensus       355 ~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  433 (513)
                      ++. |++++.|+.|+|||+++++.+..+..+...                                    .+..+.|+++
T Consensus       179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~------------------------------------~~~~~~w~~~  222 (493)
T PTZ00421        179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA------------------------------------KSQRCLWAKR  222 (493)
T ss_pred             CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC------------------------------------cceEEEEcCC
Confidence            986 779999999999999999988776533211                                    1456778888


Q ss_pred             CCEEEEec----CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          434 SDLAASGA----GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       434 ~~~l~~g~----~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      +.+|++++    .|+.|+|||+++...++... .......+....|++++.+|++++..|+.|++|++..+.
T Consensus       223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~-~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        223 KDLIITLGCSKSQQRQIMLWDTRKMASPYSTV-DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             CCeEEEEecCCCCCCeEEEEeCCCCCCceeEe-ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            77777654    47899999998764444322 222345567778999999999985569999999998664

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=6.6e-29  Score=241.00  Aligned_cols=268  Identities=18%  Similarity=0.243  Sum_probs=215.7

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ..+-++..|.+.|+|+.|+|||.+||+|+.|+.|.||.... ......+....-......+.....+.+|...|..++|+
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            34456678999999999999999999999999999999885 12111111111122222334445678899999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc------
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH------  303 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------  303 (513)
                      |++.+|++++.|++|.||+..+.+.+.++.+|.+.|..+.|.|-|+||++-+.|++|+||++......+.+..+      
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~  218 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL  218 (942)
T ss_pred             CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998776666655433      


Q ss_pred             cCCeEEEEeeCCCeEEEEe-----CCCcEEEEecCCCe-eeEEecCCCCeeEEEeecC------C------------eEE
Q 010296          304 QSEVLTIDCLRKERVLTVG-----RDRSMQLWKVPEES-RLVFRAPASSLECCCFISN------D------------EFL  359 (513)
Q Consensus       304 ~~~v~~~~~~~~~~~~~~~-----~d~~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~------~------------~~~  359 (513)
                      ...+..+.|+|+|.+++..     ...++.|.+-.+.+ ...+.+|..++.++.|+|.      .            .++
T Consensus       219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A  298 (942)
T KOG0973|consen  219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA  298 (942)
T ss_pred             cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence            3357889999999777443     23567777765555 3478899999999999872      1            256


Q ss_pred             EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE
Q 010296          360 SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS  439 (513)
Q Consensus       360 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  439 (513)
                      +|+.|++|.||.....+|+..+.....                                    ..|..++|+|||..|++
T Consensus       299 vgSqDrSlSVW~T~~~RPl~vi~~lf~------------------------------------~SI~DmsWspdG~~Lfa  342 (942)
T KOG0973|consen  299 VGSQDRSLSVWNTALPRPLFVIHNLFN------------------------------------KSIVDMSWSPDGFSLFA  342 (942)
T ss_pred             EecCCccEEEEecCCCCchhhhhhhhc------------------------------------CceeeeeEcCCCCeEEE
Confidence            899999999999999998887764332                                    23999999999999999


Q ss_pred             ecCCCcEEEEEeCCC
Q 010296          440 GAGNGSVRLWAIESE  454 (513)
Q Consensus       440 g~~dg~v~vwd~~~~  454 (513)
                      +|.||+|.+..+...
T Consensus       343 cS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  343 CSLDGTVALIHFEEK  357 (942)
T ss_pred             EecCCeEEEEEcchH
Confidence            999999999998753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=6.6e-29  Score=220.68  Aligned_cols=283  Identities=17%  Similarity=0.287  Sum_probs=229.4

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      .|..-|.++.+|...++++||+. |.|+|||+.......-+              .+........-|.++.++|||+.|+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pv--------------sqLdcl~rdnyiRSckL~pdgrtLi  481 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPV--------------SQLDCLNRDNYIRSCKLLPDGRTLI  481 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcc--------------ccccccCcccceeeeEecCCCceEE
Confidence            58888999999999999999996 88999999764321100              0001123356699999999999999


Q ss_pred             EEeCCCcEEEEeCCCcce--eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296          237 SGGLDRHIHLWDTRIQEH--IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  314 (513)
                      +|+.-.++.|||+..-.+  ...+....-.+.+++.+||.+..+++..||.|.|||+.....++.|.+|...+.||..++
T Consensus       482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~  561 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK  561 (705)
T ss_pred             eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC
Confidence            999999999999976543  333444445678899999999999999999999999999999999999999999999999


Q ss_pred             CC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296          315 KE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK  392 (513)
Q Consensus       315 ~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  392 (513)
                      +| +|.+|+-|++|+.||++.+..+......+.|.++...|++. +++|-.++.+.|........ +.+           
T Consensus       562 dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yql-----------  629 (705)
T KOG0639|consen  562 DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQL-----------  629 (705)
T ss_pred             CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc-eee-----------
Confidence            88 67799999999999999988876666677899999999986 77888999888876544332 222           


Q ss_pred             CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEE
Q 010296          393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNS  472 (513)
Q Consensus       393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~  472 (513)
                                                ..|...|.++.|.+.|+++++.+.|+.+..|...-+    ..++..+..++|.+
T Consensus       630 --------------------------hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG----asiFqskE~SsVls  679 (705)
T KOG0639|consen  630 --------------------------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLS  679 (705)
T ss_pred             --------------------------cccccEEEEEEecccCceeeecCchhhhhhccCccc----cceeeccccCccee
Confidence                                      344455999999999999999999999999999888    34444556788999


Q ss_pred             EEeecCCCEEEEEecCCCccccccc
Q 010296          473 LAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       473 v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      +.+|.|.+|+++| +.|..-.+|.+
T Consensus       680 CDIS~ddkyIVTG-SGdkkATVYeV  703 (705)
T KOG0639|consen  680 CDISFDDKYIVTG-SGDKKATVYEV  703 (705)
T ss_pred             eeeccCceEEEec-CCCcceEEEEE
Confidence            9999999999999 55555555543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=9.1e-28  Score=226.03  Aligned_cols=331  Identities=15%  Similarity=0.208  Sum_probs=239.0

Q ss_pred             ccccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC-
Q 010296          141 SRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ-  219 (513)
Q Consensus       141 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  219 (513)
                      -.+|.....+.+.+++++...|+++.=+|--..+|.|..+|+|.|+++..++.+..+                    .| 
T Consensus       184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF--------------------k~d  243 (910)
T KOG1539|consen  184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF--------------------KQD  243 (910)
T ss_pred             EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE--------------------Ecc
Confidence            346778888999999999999999999999999999999999999999999988766                    44 


Q ss_pred             cccEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC---
Q 010296          220 SKHILALAVSSDGRY-LASGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR---  294 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---  294 (513)
                      .+.|++++|..||+. |++|+..|.+.+||++..+.+..+. .|.+.|....|.|....+++++.|+.+++|=..++   
T Consensus       244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~  323 (910)
T KOG1539|consen  244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV  323 (910)
T ss_pred             ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence            488999999999874 6677777999999999888877766 69899999999999999999999999888843321   


Q ss_pred             -ceeEEeecccC--------------------------------------------------------------------
Q 010296          295 -AYISTLFGHQS--------------------------------------------------------------------  305 (513)
Q Consensus       295 -~~~~~~~~~~~--------------------------------------------------------------------  305 (513)
                       +.++.-.+|..                                                                    
T Consensus       324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~  403 (910)
T KOG1539|consen  324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF  403 (910)
T ss_pred             chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence             11222222333                                                                    


Q ss_pred             ----------------------------------------------CeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee
Q 010296          306 ----------------------------------------------EVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL  338 (513)
Q Consensus       306 ----------------------------------------------~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~  338 (513)
                                                                    .+++++.++.|.|+ .|.+.|.|-+|++.++...
T Consensus       404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r  483 (910)
T KOG1539|consen  404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR  483 (910)
T ss_pred             ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence                                                          34444555545444 4445666666666665544


Q ss_pred             EE----ecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCccc-------CCCCcccCcCccccccC
Q 010296          339 VF----RAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLD-------GLKNFEQDEGKISNGHS  406 (513)
Q Consensus       339 ~~----~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~  406 (513)
                      ..    ..|..+|+.++...-++ +++++.+|.+.+||..+..++..+...+....       .+.....+.-.|.+...
T Consensus       484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~  563 (910)
T KOG1539|consen  484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV  563 (910)
T ss_pred             cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence            22    25666777777766554 66788888888888877776666655443221       11111111112211111


Q ss_pred             CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEe
Q 010296          407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGV  486 (513)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~  486 (513)
                      ....+   .-...+|...|+.++|||+|++|++++.|++|++||+.++    ..+..+....+++++.|||+|.+||++.
T Consensus       564 ~t~kv---vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~----~lID~~~vd~~~~sls~SPngD~LAT~H  636 (910)
T KOG1539|consen  564 VTRKV---VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG----TLIDGLLVDSPCTSLSFSPNGDFLATVH  636 (910)
T ss_pred             hhhhh---hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc----ceeeeEecCCcceeeEECCCCCEEEEEE
Confidence            11000   0111568888999999999999999999999999999998    4444444678899999999999999995


Q ss_pred             cCCCcccccccC
Q 010296          487 GQEPRLGRWGHL  498 (513)
Q Consensus       487 ~~dg~v~~W~~~  498 (513)
                      -+...|++|...
T Consensus       637 vd~~gIylWsNk  648 (910)
T KOG1539|consen  637 VDQNGIYLWSNK  648 (910)
T ss_pred             ecCceEEEEEch
Confidence            555789999644

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6e-29  Score=227.68  Aligned_cols=290  Identities=17%  Similarity=0.337  Sum_probs=232.4

Q ss_pred             ccCCCeE---EEEEC-CCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          157 KHRQSVT---AVALS-EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       157 ~h~~~V~---~~~~s-~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      .|...|.   .+..+ |.++||+|||.||.|++|++........             ......+..|...|..++...++
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s-------------~~~~asme~HsDWVNDiiL~~~~   85 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS-------------TPYIASMEHHSDWVNDIILCGNG   85 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc-------------cchhhhhhhhHhHHhhHHhhcCC
Confidence            4555565   45554 4677899999999999999875443210             00123567899999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCc--ceeeeccCcCCCeEEEEE-ecCCCeEEEEeCCCcEEEEeCCCCc--eeEE--------
Q 010296          233 RYLASGGLDRHIHLWDTRIQ--EHIQAFPGHRGPVSCLTF-RQGTSELFSGSFDRTVKIWNAEDRA--YIST--------  299 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~--------  299 (513)
                      +.|++++.|-+|++|+...+  -++.++..|...|.|+++ .++...+++|+.|+.|.+||+.++.  .+..        
T Consensus        86 ~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s  165 (735)
T KOG0308|consen   86 KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS  165 (735)
T ss_pred             CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence            99999999999999999877  577889999999999999 7788889999999999999999772  2222        


Q ss_pred             ee-cccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCC
Q 010296          300 LF-GHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       300 ~~-~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~  375 (513)
                      +. ++...|++++.++.+.++ +|+..+.|++||.++...+ .+.+|...|.++..+++|. ++++++||+|++||+...
T Consensus       166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ  245 (735)
T ss_pred             CCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence            22 678899999999988555 7888999999999987765 7789999999999999995 999999999999999999


Q ss_pred             CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC
Q 010296          376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET  455 (513)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~  455 (513)
                      +++.++..+.                                     ..|+++..+|+-.++++|+.||.|+.=|+.+..
T Consensus       246 rCl~T~~vH~-------------------------------------e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  246 RCLATYIVHK-------------------------------------EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             ceeeeEEecc-------------------------------------CceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence            9999975433                                     339999999999999999999999999999862


Q ss_pred             cceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          456 KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       456 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      . ...+..  ...+|..+..+....-+-++ ..|+.|+.|.....
T Consensus       289 ~-~tlick--~daPv~~l~~~~~~~~~Wvt-Ttds~I~rW~~~~~  329 (735)
T KOG0308|consen  289 K-STLICK--EDAPVLKLHLHEHDNSVWVT-TTDSSIKRWKLEPD  329 (735)
T ss_pred             h-heEeec--CCCchhhhhhccccCCceee-eccccceecCCccc
Confidence            2 233333  45678878777544443444 67899999976543

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.5e-27  Score=228.01  Aligned_cols=230  Identities=15%  Similarity=0.175  Sum_probs=178.4

Q ss_pred             EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeCCCCc--------eeEEeecccCCeE
Q 010296          238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNAEDRA--------YISTLFGHQSEVL  308 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~  308 (513)
                      |+..+.|++|++.....+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++.        ++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            566789999998888888899999999999999997 7899999999999999997642        3446788999999


Q ss_pred             EEEeeCCCe-E-EEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296          309 TIDCLRKER-V-LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       309 ~~~~~~~~~-~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      +++|+|++. + ++++.|++|++||+.++.......+...|.+++|+++|. |++++.|+.|+|||+++++.+..+..+.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~  209 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD  209 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence            999999763 3 578899999999999887664444667899999999997 6678889999999999999888775432


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC----cEEEEEeCCCCcceeee
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG----SVRLWAIESETKDIQPL  461 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg----~v~vwd~~~~~~~~~~~  461 (513)
                      ..                                .....+....|++++.+|++++.++    .|+|||++....++..+
T Consensus       210 g~--------------------------------~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~  257 (568)
T PTZ00420        210 GG--------------------------------KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM  257 (568)
T ss_pred             CC--------------------------------ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence            21                                0011134455678999999988764    79999999754555544


Q ss_pred             eecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          462 YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      ....+.+.+......++|.++++| +.|+.|++|++..+
T Consensus       258 ~ld~~~~~L~p~~D~~tg~l~lsG-kGD~tIr~~e~~~~  295 (568)
T PTZ00420        258 SIDNASAPLIPHYDESTGLIYLIG-KGDGNCRYYQHSLG  295 (568)
T ss_pred             EecCCccceEEeeeCCCCCEEEEE-ECCCeEEEEEccCC
Confidence            332234444444445567777777 89999999998765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=8.4e-29  Score=220.74  Aligned_cols=250  Identities=19%  Similarity=0.324  Sum_probs=198.7

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce----eeec-cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEe
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAF-PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN  290 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  290 (513)
                      +.+|+..|.++++.|.|..|++|+.|.+|++||+.....    .+.+ +.....|.+++|++.+..|++.+....++|+|
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D  242 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD  242 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence            357888899999999999999999999999999874321    1122 23456899999999999999999999999999


Q ss_pred             CCCCceeEE------------eecccCCeEEEEeeCC--CeEEEEeCCCcEEEEecCCCeee--EE-----ecCCCCeeE
Q 010296          291 AEDRAYIST------------LFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEESRL--VF-----RAPASSLEC  349 (513)
Q Consensus       291 ~~~~~~~~~------------~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~--~~-----~~~~~~v~~  349 (513)
                      -.....+..            .++|...++|.+|+|.  +.|++++.||++++|++...+..  ++     .+...+++.
T Consensus       243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts  322 (641)
T KOG0772|consen  243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS  322 (641)
T ss_pred             cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence            765544333            2578889999999996  47999999999999999764432  11     123457889


Q ss_pred             EEeecCCe-EEEEeCCCCEEEEecCCC--CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEE
Q 010296          350 CCFISNDE-FLSGSDDGSIELWSLLRK--KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS  426 (513)
Q Consensus       350 ~~~~~~~~-~~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~  426 (513)
                      |+|++++. |++|+.||.|.+|+....  .+...+...|..                                  ...|+
T Consensus       323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~----------------------------------g~~It  368 (641)
T KOG0772|consen  323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP----------------------------------GQDIT  368 (641)
T ss_pred             eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC----------------------------------CCcee
Confidence            99999997 779999999999998554  334444433322                                  11399


Q ss_pred             EEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecC-----CCcccccccCC
Q 010296          427 SVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ-----EPRLGRWGHLP  499 (513)
Q Consensus       427 ~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~-----dg~v~~W~~~~  499 (513)
                      ||+||++|++|++-+.|++++|||++...+++.....++..-+-+.++|||+.++|++|++.     .|.+.+++..+
T Consensus       369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t  446 (641)
T KOG0772|consen  369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT  446 (641)
T ss_pred             EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence            99999999999999999999999999988888888887777788899999999999998653     36677776554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=3.5e-28  Score=198.75  Aligned_cols=246  Identities=17%  Similarity=0.247  Sum_probs=203.2

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceee--eccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNA  291 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~  291 (513)
                      ...+|...|.+++|+.+|..|++|+.|+++.+|++...+...  ...+|.+.|-.++|+|. ...|++++.|.+|++||+
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence            356788999999999999999999999999999998775543  35679999999999874 467889999999999999


Q ss_pred             CCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-eEEEEeCCCCEEE
Q 010296          292 EDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND-EFLSGSDDGSIEL  369 (513)
Q Consensus       292 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~i  369 (513)
                      ++++++..+....+. .-+.|+|++ ++++++.|..|.+.|.++.+..........+.-++|+..+ .|+.....|+|.|
T Consensus        95 r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I  173 (313)
T KOG1407|consen   95 RSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI  173 (313)
T ss_pred             ccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence            999999888754444 456788866 6778889999999999998887666666677778887555 4666677899999


Q ss_pred             EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296          370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW  449 (513)
Q Consensus       370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw  449 (513)
                      ......+++..++                                     .|+....|+.|+|+|++||+|+.|..+.+|
T Consensus       174 LsypsLkpv~si~-------------------------------------AH~snCicI~f~p~GryfA~GsADAlvSLW  216 (313)
T KOG1407|consen  174 LSYPSLKPVQSIK-------------------------------------AHPSNCICIEFDPDGRYFATGSADALVSLW  216 (313)
T ss_pred             Eeccccccccccc-------------------------------------cCCcceEEEEECCCCceEeeccccceeecc
Confidence            9999999998885                                     333448999999999999999999999999


Q ss_pred             EeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          450 AIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       450 d~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      |+... ...+.+..  +.-+|+.+.||.||++||++ +.|..|-|=++.++.+
T Consensus       217 D~~EL-iC~R~isR--ldwpVRTlSFS~dg~~lASa-SEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  217 DVDEL-ICERCISR--LDWPVRTLSFSHDGRMLASA-SEDHFIDIAEVETGDR  265 (313)
T ss_pred             ChhHh-hhheeecc--ccCceEEEEeccCcceeecc-CccceEEeEecccCCe
Confidence            99875 33334433  67899999999999999999 9998887766666543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=3.6e-28  Score=224.75  Aligned_cols=324  Identities=17%  Similarity=0.196  Sum_probs=250.9

Q ss_pred             EEeeccccCCCcccchhhhhccCCCeEEEEECCC-----------CCeEEEEeCCceEEEEeCCCCccccccCCCh----
Q 010296          137 RVIASRVQKPEATDEFRVLLKHRQSVTAVALSED-----------DSKGFSASKDGSILHWDVSSGKGVKYLWPSE----  201 (513)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-----------~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~----  201 (513)
                      .+..|.+.++........+.-|...|+.+.--|.           ...+.||+.|++|++|++..+..-..+..+.    
T Consensus       347 SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~  426 (1080)
T KOG1408|consen  347 SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN  426 (1080)
T ss_pred             eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence            3445666666677777778889999999887661           2358899999999999998754333321110    


Q ss_pred             -----------hhhccCC---CCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEE
Q 010296          202 -----------EVLKSHG---AKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSC  267 (513)
Q Consensus       202 -----------~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  267 (513)
                                 ..+...+   ..............+.+++.+|+|++||+|..-|+++||++...+....+..|...|.|
T Consensus       427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilc  506 (1080)
T KOG1408|consen  427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILC  506 (1080)
T ss_pred             hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEE
Confidence                       0000000   01111233445667999999999999999999999999999999999999999999999


Q ss_pred             EEEec---CCCeEEEEeCCCcEEEEeCCC-CceeEEeecccCCeEEEEeeCCC---eEEEEeCCCcEEEEecCCCe-eeE
Q 010296          268 LTFRQ---GTSELFSGSFDRTVKIWNAED-RAYISTLFGHQSEVLTIDCLRKE---RVLTVGRDRSMQLWKVPEES-RLV  339 (513)
Q Consensus       268 ~~~~~---~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~i~iwd~~~~~-~~~  339 (513)
                      +.|+.   ..++|++++.|..|+|||+.. ..++.++.+|...|+++.|.-.|   ++++++.|..|.+--.+... -..
T Consensus       507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~  586 (1080)
T KOG1408|consen  507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL  586 (1080)
T ss_pred             EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee
Confidence            99975   246799999999999999865 45678889999999999998755   78899999888764433211 111


Q ss_pred             -----EecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCC
Q 010296          340 -----FRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNP  413 (513)
Q Consensus       340 -----~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  413 (513)
                           .......+..+.+.|... +++++.|..|+||++.+++..+.|+..+.                           
T Consensus       587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~---------------------------  639 (1080)
T KOG1408|consen  587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD---------------------------  639 (1080)
T ss_pred             ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc---------------------------
Confidence                 122335677888888875 77999999999999999999999986543                           


Q ss_pred             CCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccc
Q 010296          414 GSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLG  493 (513)
Q Consensus       414 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~  493 (513)
                             +.+....+...|.|.|||+.+.|.++.++|+.++ ..+..+..  |...|+.+.|.+|.++|++. +.||.|.
T Consensus       640 -------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~G--HsE~VTG~kF~nDCkHlISv-sgDgCIF  708 (1080)
T KOG1408|consen  640 -------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTG--HSEAVTGVKFLNDCKHLISV-SGDGCIF  708 (1080)
T ss_pred             -------CCCceEEEEECCCccEEEEeecCCceEEEEeccc-hhhhhhcC--cchheeeeeecccchhheee-cCCceEE
Confidence                   3344778899999999999999999999999998 44444444  89999999999999999999 8899999


Q ss_pred             ccccC
Q 010296          494 RWGHL  498 (513)
Q Consensus       494 ~W~~~  498 (513)
                      +|.+.
T Consensus       709 vW~lp  713 (1080)
T KOG1408|consen  709 VWKLP  713 (1080)
T ss_pred             EEECc
Confidence            99764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.3e-28  Score=203.60  Aligned_cols=280  Identities=17%  Similarity=0.236  Sum_probs=225.9

Q ss_pred             cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCC------CCccccccC---------------CC
Q 010296          142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVS------SGKGVKYLW---------------PS  200 (513)
Q Consensus       142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~------~~~~~~~~~---------------~~  200 (513)
                      .+|..+...++..+.||.+.|+||.|++.+.+++|++.|++..||...      .........               ..
T Consensus       173 ~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~  252 (481)
T KOG0300|consen  173 RIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDS  252 (481)
T ss_pred             eEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccc
Confidence            468888999999999999999999999999999999999999999832      111100000               00


Q ss_pred             hhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEE
Q 010296          201 EEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSG  280 (513)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  280 (513)
                      ......+....|...+.+|...|.+..|-..|+.+++++.|.+..+||++++.++..+.+|....+.++-+|..+++++.
T Consensus       253 ~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs  332 (481)
T KOG0300|consen  253 SEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS  332 (481)
T ss_pred             ccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEe
Confidence            01112223356777889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEeCCCC-ceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCee-eEEecCCCCeeEEEeecCCe-
Q 010296          281 SFDRTVKIWNAEDR-AYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESR-LVFRAPASSLECCCFISNDE-  357 (513)
Q Consensus       281 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~-  357 (513)
                      +.|.+.++||++.. ..+..|.+|...|+++.|..+.++++++.|.+|++||+++... +......+++..++++..+. 
T Consensus       333 SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~i  412 (481)
T KOG0300|consen  333 SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPI  412 (481)
T ss_pred             ccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCce
Confidence            99999999999853 4577899999999999999999999999999999999987654 34455667888899988885 


Q ss_pred             EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC--C
Q 010296          358 FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS--D  435 (513)
Q Consensus       358 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~  435 (513)
                      ++.--.+..|++||+...... .++...                                ..+|..-|+|++|..+.  .
T Consensus       413 IAiPhDNRqvRlfDlnG~Rla-RlPrts--------------------------------RqgHrRMV~c~AW~eehp~c  459 (481)
T KOG0300|consen  413 IAIPHDNRQVRLFDLNGNRLA-RLPRTS--------------------------------RQGHRRMVTCCAWLEEHPAC  459 (481)
T ss_pred             EEeccCCceEEEEecCCCccc-cCCccc--------------------------------ccccceeeeeeeccccCccc
Confidence            556667789999998765432 222111                                14566669999998643  3


Q ss_pred             EEEEecCCCcEEEEEeCCC
Q 010296          436 LAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       436 ~l~~g~~dg~v~vwd~~~~  454 (513)
                      -|++++-|..+.-|.++..
T Consensus       460 nLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  460 NLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccccccccceeeeeEeccc
Confidence            5788999999999998765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=7.9e-29  Score=215.10  Aligned_cols=247  Identities=18%  Similarity=0.315  Sum_probs=212.9

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc--eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE--HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE  292 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  292 (513)
                      .+..|.+.|..+.|-++...|++|+.|..|++|++...+  .+.++.+..++|+++.|.++++++++++.|+.+++|++.
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd  249 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD  249 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence            456789999999999998999999999999999987766  678888888999999999999999999999999999999


Q ss_pred             CCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEe
Q 010296          293 DRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWS  371 (513)
Q Consensus       293 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd  371 (513)
                      ..+...++.+|...|+++.|.... ++++++.|.+|++||+....+.....+...+..++.. ...+++|..|++|++||
T Consensus       250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~-~~~~~SgH~DkkvRfwD  328 (459)
T KOG0288|consen  250 SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS-ISDVISGHFDKKVRFWD  328 (459)
T ss_pred             chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec-ceeeeecccccceEEEe
Confidence            999999999999999999998765 4889999999999999988777666666666666665 33478999999999999


Q ss_pred             cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      .++..+........                                      .|+++..+++|..|.+++.|.++.+.|+
T Consensus       329 ~Rs~~~~~sv~~gg--------------------------------------~vtSl~ls~~g~~lLsssRDdtl~viDl  370 (459)
T KOG0288|consen  329 IRSADKTRSVPLGG--------------------------------------RVTSLDLSMDGLELLSSSRDDTLKVIDL  370 (459)
T ss_pred             ccCCceeeEeecCc--------------------------------------ceeeEeeccCCeEEeeecCCCceeeeec
Confidence            99999988876433                                      3999999999999999999999999999


Q ss_pred             CCCCcceeeeee--cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          452 ESETKDIQPLYN--LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       452 ~~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      ++. ...+++..  +......+.+.|||++.|+++| |.||.|+||++.++.-
T Consensus       371 Rt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG-S~dgsv~iW~v~tgKl  421 (459)
T KOG0288|consen  371 RTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG-SADGSVYIWSVFTGKL  421 (459)
T ss_pred             ccc-cEEEEeeccccccccccceeEECCCCceeeec-cCCCcEEEEEccCceE
Confidence            987 33333322  1224558999999999999999 9999999999988754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2e-27  Score=209.75  Aligned_cols=281  Identities=20%  Similarity=0.278  Sum_probs=218.5

Q ss_pred             CeEEEEe-CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296          172 SKGFSAS-KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR  250 (513)
Q Consensus       172 ~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~  250 (513)
                      .|++++. .-..|.+|.+........                   ..--.++|.+++-+|.|.+|+.|+..|.|++|.+.
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q-------------------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels  111 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQ-------------------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS  111 (476)
T ss_pred             hheeeecccCccccccccCchhhhhh-------------------hcccccceeeeecCCCceEEEeecccCcEEEEEec
Confidence            4555553 345788888765544331                   12336679999999999999999999999999999


Q ss_pred             CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC---------CCceeEEeecccCCeEEEEeeCC---CeE
Q 010296          251 IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE---------DRAYISTLFGHQSEVLTIDCLRK---ERV  318 (513)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~---~~~  318 (513)
                      +|..+..+.+|-..|+|+.|+.|+.+|++|+.||.|.+|.+.         +-+++..+..|.-+|+.+...+.   .++
T Consensus       112 sG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl  191 (476)
T KOG0646|consen  112 SGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL  191 (476)
T ss_pred             cccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceE
Confidence            999999999999999999999999999999999999999863         34567888999999999998764   589


Q ss_pred             EEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEE---eecCCCcccCCCCc
Q 010296          319 LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYI---VKNAHPLLDGLKNF  394 (513)
Q Consensus       319 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~  394 (513)
                      ++++.|.++++||+..+..+........+.++++.|..+ +++|+.+|.|.+.++........   .+..+......   
T Consensus       192 ~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~---  268 (476)
T KOG0646|consen  192 YTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQI---  268 (476)
T ss_pred             EEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccccee---
Confidence            999999999999999999888888888999999999986 77999999999988866442111   00001000000   


Q ss_pred             ccCcCccccccCCCCCCCCCCcCCCCCc--ceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEE
Q 010296          395 EQDEGKISNGHSENGNLNPGSYHSSSAY--SWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNS  472 (513)
Q Consensus       395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~  472 (513)
                                         ..+  .+|.  ..|+|++++-||.+|++|+.||.|+|||+.+. +.++.+..  ..++|+-
T Consensus       269 -------------------~~~--~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~~--~kgpVtn  324 (476)
T KOG0646|consen  269 -------------------NVL--VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK-QCIRTLQT--SKGPVTN  324 (476)
T ss_pred             -------------------eee--ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH-HHHHHHhh--hccccce
Confidence                               001  2333  37999999999999999999999999999987 44444432  5789999


Q ss_pred             EEeecCCCEEEEEecCCCcccccccC
Q 010296          473 LAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       473 v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      +.+.|=-+-.+.+.+....+-.|+..
T Consensus       325 L~i~~~~~~~~l~~~~~ps~~~~~lk  350 (476)
T KOG0646|consen  325 LQINPLERGIILFEHKQPSLPNPHLK  350 (476)
T ss_pred             eEeeccccceecccccCccCCchHhh
Confidence            99977666566554566666666543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.4e-26  Score=220.56  Aligned_cols=276  Identities=15%  Similarity=0.190  Sum_probs=227.7

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC-ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG-KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY  234 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  234 (513)
                      .+|+..-+.|+|.|+|.+|+||+.||.|++|+..+. +...++                   ..+...|++++..  +.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-------------------~~~g~~v~~ia~~--s~~   68 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-------------------DISGELVSSIACY--SNH   68 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-------------------hccCceeEEEeec--ccc
Confidence            379999999999999999999999999999998765 332222                   2266778888775  559


Q ss_pred             EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296          235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  314 (513)
                      |++|+.+++|.+|.+.+++.-..+...+-++.+++|+.+|++++.|+.|-.|++.++........+.+|.++|.++.|+|
T Consensus        69 f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p  148 (933)
T KOG1274|consen   69 FLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP  148 (933)
T ss_pred             eEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence            99999999999999998887666666778999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEE-EEeCCCcEEEEecCCCeeeEEec---------CCCCeeEEEeecC-CeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          315 KERVL-TVGRDRSMQLWKVPEESRLVFRA---------PASSLECCCFISN-DEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       315 ~~~~~-~~~~d~~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~-~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      .+.|+ +.+.||.|++|++..+.......         ....+..++|+|+ |.|++.+.|+.|.+|+..++...+.+..
T Consensus       149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~  228 (933)
T KOG1274|consen  149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD  228 (933)
T ss_pred             CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence            98776 67789999999998876542111         1345667899999 4799999999999999999998888765


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                      .+.                                   ...++.++|+|+|+|||+++.+|.|.|||+.+...       
T Consensus       229 ~~~-----------------------------------ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------  266 (933)
T KOG1274|consen  229 KLS-----------------------------------SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-------  266 (933)
T ss_pred             ccc-----------------------------------ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-------
Confidence            332                                   12289999999999999999999999999987411       


Q ss_pred             cCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W  495 (513)
                      ......|.+++|.|+...|-.. ...|...+|
T Consensus       267 ~~~~~~Vc~~aw~p~~n~it~~-~~~g~~~~~  297 (933)
T KOG1274|consen  267 HEFKRAVCCEAWKPNANAITLI-TALGTLGVS  297 (933)
T ss_pred             ccccceeEEEecCCCCCeeEEE-eeccccccC
Confidence            1245679999999998876555 455666666

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.9e-28  Score=194.50  Aligned_cols=249  Identities=18%  Similarity=0.286  Sum_probs=201.0

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc---ceeeeccCcCCCeEEEEEec--CCCeEEEEeCCCcEEEEe
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ---EHIQAFPGHRGPVSCLTFRQ--GTSELFSGSFDRTVKIWN  290 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd  290 (513)
                      ...|...|..+...--|+.||+++.|++|+|+.++..   +++..|.+|.++|+.++|..  -|.+|++++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            4678888999888888999999999999999998754   46788999999999999965  789999999999999999


Q ss_pred             CCCCce--eEEeecccCCeEEEEeeCCC---eEEEEeCCCcEEEEecCCCe----eeEEecCCCCeeEEEeecC---C--
Q 010296          291 AEDRAY--ISTLFGHQSEVLTIDCLRKE---RVLTVGRDRSMQLWKVPEES----RLVFRAPASSLECCCFISN---D--  356 (513)
Q Consensus       291 ~~~~~~--~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~---~--  356 (513)
                      -.+++.  ......|...|++++|.|.+   .|++++.||.|.+++.+...    ......|.-.|++++|.|.   |  
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            888753  34556799999999999964   45688999999999987652    2356788889999999875   2  


Q ss_pred             ----------eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEE
Q 010296          357 ----------EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS  426 (513)
Q Consensus       357 ----------~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~  426 (513)
                                +|++|+.|..|+||+...+.-...-    .                               ...|..+|.
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~----~-------------------------------l~~H~dwVR  211 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER----T-------------------------------LEGHKDWVR  211 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhh----h-------------------------------hhhcchhhh
Confidence                      3899999999999998876221111    0                               067888899


Q ss_pred             EEEEecCC----CEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          427 SVTVCGGS----DLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       427 ~~~~s~~~----~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      .++|+|.-    .+||+++.||+|.||-......+.+.....+....+..+.||+.|..|+++ +.|..|.+|.-...
T Consensus       212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs-~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVS-GGDNKVTLWKENVD  288 (299)
T ss_pred             hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEe-cCCcEEEEEEeCCC
Confidence            99999954    589999999999999987542333222222256789999999999999999 78889999965443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.3e-27  Score=200.20  Aligned_cols=253  Identities=22%  Similarity=0.310  Sum_probs=202.8

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------------c------ceeeeccCcCCCeEEEEEecCCCe
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI------------Q------EHIQAFPGHRGPVSCLTFRQGTSE  276 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~  276 (513)
                      .+..|..++.+.+|+|||.++++|+.|..|+|.|++.            +      -.++++..|...|+++.|+|....
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            4568999999999999999999999999999999761            1      246778889999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCceeEE--eecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeE----EecCCCCeeE
Q 010296          277 LFSGSFDRTVKIWNAEDRAYIST--LFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLV----FRAPASSLEC  349 (513)
Q Consensus       277 l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~----~~~~~~~v~~  349 (513)
                      |++++.|++|+++|+......+.  ......+|.++.|+|.|.++ ++.....+++||+.+-++..    -..|...|++
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~  266 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQ  266 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeE
Confidence            99999999999999976433222  22356689999999998766 66667899999999988763    3456788999


Q ss_pred             EEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296          350 CCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV  428 (513)
Q Consensus       350 ~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  428 (513)
                      +.+++.+. +++++.||.|+|||--+++++.++...|..                                   ..|++.
T Consensus       267 V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g-----------------------------------sevcSa  311 (430)
T KOG0640|consen  267 VRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG-----------------------------------SEVCSA  311 (430)
T ss_pred             EEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC-----------------------------------ceeeeE
Confidence            99999997 779999999999999999999999876653                                   239999


Q ss_pred             EEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCccc---EEEEEEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296          429 TVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG---FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       429 ~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~---~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                      .|..+|+++++.+.|..|++|.+.++ +.++........+   .-+...|+....|++.---..+.+.-||..++.+.
T Consensus       312 ~Ftkn~kyiLsSG~DS~vkLWEi~t~-R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~  388 (430)
T KOG0640|consen  312 VFTKNGKYILSSGKDSTVKLWEISTG-RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV  388 (430)
T ss_pred             EEccCCeEEeecCCcceeeeeeecCC-ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence            99999999999999999999999998 5555555432222   23445677676776665344567778877665543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.6e-27  Score=193.05  Aligned_cols=251  Identities=17%  Similarity=0.238  Sum_probs=200.9

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC--C
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS--D  231 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~  231 (513)
                      .-..|.+-|..+...-.|+.||||+.|++|+||.+.+.....                +...+.+|.++|+.++|..  .
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~   69 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKF   69 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeeccccc
Confidence            345799999999999999999999999999999998766422                1225689999999999965  7


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcce--eeeccCcCCCeEEEEEecC--CCeEEEEeCCCcEEEEeCCCC-c--eeEEeeccc
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEH--IQAFPGHRGPVSCLTFRQG--TSELFSGSFDRTVKIWNAEDR-A--YISTLFGHQ  304 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~-~--~~~~~~~~~  304 (513)
                      |.+||++++||.|.||.-.+++-  ...+..|...|++++|.|.  |-.|++++.||.|.|.+.+.. .  .......|.
T Consensus        70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~  149 (299)
T KOG1332|consen   70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE  149 (299)
T ss_pred             CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence            99999999999999999887743  3455679999999999886  456889999999999998764 2  123346799


Q ss_pred             CCeEEEEeeCC---C------------eEEEEeCCCcEEEEecCCCee---eEEecCCCCeeEEEeecCC-----eEEEE
Q 010296          305 SEVLTIDCLRK---E------------RVLTVGRDRSMQLWKVPEESR---LVFRAPASSLECCCFISND-----EFLSG  361 (513)
Q Consensus       305 ~~v~~~~~~~~---~------------~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~-----~~~~~  361 (513)
                      -.|++++|.|.   |            +|++++.|+.|+||......-   ..+..|...|..++|.|.-     .++++
T Consensus       150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~  229 (299)
T KOG1332|consen  150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC  229 (299)
T ss_pred             cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence            99999999884   2            488999999999999988532   2578899999999999864     38899


Q ss_pred             eCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296          362 SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA  441 (513)
Q Consensus       362 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  441 (513)
                      +.||++.||..............                                  ......+..+.||+.|++|++++
T Consensus       230 SqDg~viIwt~~~e~e~wk~tll----------------------------------~~f~~~~w~vSWS~sGn~LaVs~  275 (299)
T KOG1332|consen  230 SQDGTVIIWTKDEEYEPWKKTLL----------------------------------EEFPDVVWRVSWSLSGNILAVSG  275 (299)
T ss_pred             cCCCcEEEEEecCccCccccccc----------------------------------ccCCcceEEEEEeccccEEEEec
Confidence            99999999987632111111111                                  11223499999999999999999


Q ss_pred             CCCcEEEEEeCCC
Q 010296          442 GNGSVRLWAIESE  454 (513)
Q Consensus       442 ~dg~v~vwd~~~~  454 (513)
                      .|+.|.+|.-+..
T Consensus       276 GdNkvtlwke~~~  288 (299)
T KOG1332|consen  276 GDNKVTLWKENVD  288 (299)
T ss_pred             CCcEEEEEEeCCC
Confidence            9999999987654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=1.2e-25  Score=208.68  Aligned_cols=275  Identities=12%  Similarity=0.103  Sum_probs=201.2

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL-ASGGLDRHIHLWDTR  250 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~  250 (513)
                      ..+++++.|+.|++||+.+++.+..+                   ..+ ..+.+++|+|+++.+ ++++.++.|++||+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~-------------------~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTF-------------------PVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEE-------------------ECC-CCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            56889999999999999988766544                   222 336789999999876 566778999999999


Q ss_pred             CcceeeeccCcCCCeEEEEEecCCCeEEEE-eCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCC-cE
Q 010296          251 IQEHIQAFPGHRGPVSCLTFRQGTSELFSG-SFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDR-SM  327 (513)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~-~i  327 (513)
                      +++.+..+..+.. +..++|+|+++.++++ +.++.|++||+.+.+.+..+. +...+.+++|+|++.++ ++..++ .+
T Consensus        62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~  139 (300)
T TIGR03866        62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMA  139 (300)
T ss_pred             CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeE
Confidence            9988877765443 5678999999987654 568999999999988777665 33456889999998665 444443 56


Q ss_pred             EEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296          328 QLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH  405 (513)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  405 (513)
                      .+|+..+............+.+++|++++. ++ ++..++.|++||+.+++.+..+.......                 
T Consensus       140 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-----------------  202 (300)
T TIGR03866       140 HFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV-----------------  202 (300)
T ss_pred             EEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccc-----------------
Confidence            778988776654333344567789999986 43 44568999999999988776654221100                 


Q ss_pred             CCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE-ecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEE
Q 010296          406 SENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS-GAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIA  484 (513)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~  484 (513)
                                   .........++|+|+++++++ .+.++.|.+||+.++ +....+   .+...+.+++|+|+|++|++
T Consensus       203 -------------~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~~~---~~~~~~~~~~~~~~g~~l~~  265 (300)
T TIGR03866       203 -------------HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVLDYL---LVGQRVWQLAFTPDEKYLLT  265 (300)
T ss_pred             -------------ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEE---EeCCCcceEEECCCCCEEEE
Confidence                         000011456889999998654 355678999999876 222222   23457899999999999998


Q ss_pred             EecCCCcccccccCCCcc
Q 010296          485 GVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       485 ~~~~dg~v~~W~~~~~~~  502 (513)
                      +.+.++.|.+||......
T Consensus       266 ~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       266 TNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             EcCCCCeEEEEECCCCcE
Confidence            867899999999987653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.4e-26  Score=202.37  Aligned_cols=252  Identities=17%  Similarity=0.225  Sum_probs=206.8

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI  223 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (513)
                      .+.+..+.+.++.||+..|+.+.|+|+...+++++.|..|+||.........                   ....|..+|
T Consensus       246 ~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~-------------------~~~~h~~~V  306 (506)
T KOG0289|consen  246 FDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT-------------------SSRPHEEPV  306 (506)
T ss_pred             EecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc-------------------ccccccccc
Confidence            3445567788999999999999999999999999999999999987766443                   346899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCc--CCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGH--RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      +.+..+|.|.||++++.|++..+.|++++..+......  .-.+++.+|+|||..|.+|..||.|+|||+.++..+..|.
T Consensus       307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp  386 (506)
T KOG0289|consen  307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP  386 (506)
T ss_pred             eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence            99999999999999999999999999999987766532  2348999999999999999999999999999999999999


Q ss_pred             cccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEE--ecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCC--C
Q 010296          302 GHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVF--RAPASSLECCCFISNDE-FLSGSDDGSIELWSLLR--K  375 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~--~  375 (513)
                      +|.++|..++|+.+|+++ +++.|+.|++||++.......  ......+.++.|.+.|. +++++.+=+|++++-.+  .
T Consensus       387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W  466 (506)
T KOG0289|consen  387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW  466 (506)
T ss_pred             CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence            999999999999999766 778888899999997765422  22334699999999997 55666665555555333  3


Q ss_pred             CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      ..+..+                                     ..|.+..+++.|....+++++++.|..++|+.+
T Consensus       467 ~~~~~~-------------------------------------~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  467 TEIKEL-------------------------------------ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeeehh-------------------------------------hhcccccceeeecccceEEeeccchhheEEeec
Confidence            333333                                     223344889999999999999999999888864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=3.8e-25  Score=197.11  Aligned_cols=293  Identities=17%  Similarity=0.310  Sum_probs=222.7

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI  223 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (513)
                      |+-.........+.....|....|+|....|+.....+.+..|++..+...+..-    ++           .......|
T Consensus       185 WdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~----~f-----------ek~ekk~V  249 (626)
T KOG2106|consen  185 WDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQG----IF-----------EKREKKFV  249 (626)
T ss_pred             hhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEee----cc-----------ccccceEE
Confidence            3333344444555667889999999976655554456899999999887655320    00           01122679


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc--------
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA--------  295 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------  295 (513)
                      .|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+| +|+.|..|..||-.-.+        
T Consensus       250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe  327 (626)
T KOG2106|consen  250 LCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPE  327 (626)
T ss_pred             EEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCch
Confidence            9999999986 7899999999999998888877777999999999999998755 59999999999832100        


Q ss_pred             ---ee-----------------------------EEeecccCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCeeeEEec
Q 010296          296 ---YI-----------------------------STLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEESRLVFRA  342 (513)
Q Consensus       296 ---~~-----------------------------~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~  342 (513)
                         .+                             ....+|......++.+|. ..+++++.|+.+++|+  ..+......
T Consensus       328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~  405 (626)
T KOG2106|consen  328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI  405 (626)
T ss_pred             hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE
Confidence               00                             011346667777787775 4677888899999998  455555555


Q ss_pred             CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296          343 PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY  422 (513)
Q Consensus       343 ~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  422 (513)
                      ...++.|+.|+|.|.++.|+..|...+.|..+...+..-..                                      .
T Consensus       406 ~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d--------------------------------------~  447 (626)
T KOG2106|consen  406 IEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD--------------------------------------N  447 (626)
T ss_pred             ecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec--------------------------------------C
Confidence            66778888888888888888888888888888544443322                                      2


Q ss_pred             ceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296          423 SWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       423 ~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W  495 (513)
                      .++++++|+|+|.+||.|+.|+.|+||-+.............. ..+|+.+.||+|+++|.+- +-|-.|..|
T Consensus       448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~-gs~ithLDwS~Ds~~~~~~-S~d~eiLyW  518 (626)
T KOG2106|consen  448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS-GSPITHLDWSSDSQFLVSN-SGDYEILYW  518 (626)
T ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec-CceeEEeeecCCCceEEec-cCceEEEEE
Confidence            3399999999999999999999999999998766666665543 4899999999999999998 788899999

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.2e-26  Score=214.35  Aligned_cols=239  Identities=21%  Similarity=0.376  Sum_probs=206.9

Q ss_pred             cchhhhhccCCCeEE-EEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          150 DEFRVLLKHRQSVTA-VALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~-~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      ...+.+.+|.+.|.+ ++|-+ ++-.|++|+.|.+|.+|.+.......++                   .+|...|.|+.
T Consensus        48 l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-------------------kgH~snVC~ls  108 (745)
T KOG0301|consen   48 LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-------------------KGHKSNVCSLS  108 (745)
T ss_pred             ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh-------------------hccccceeeee
Confidence            344567789999988 88886 5556999999999999999988876654                   89999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296          228 VSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV  307 (513)
Q Consensus       228 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  307 (513)
                      ...++. |++||.|.++++|-.  +++...+.+|...|+++++-|.. .++||+.|.+|++|.-  ++.+.++.+|..-|
T Consensus       109 ~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~V  182 (745)
T KOG0301|consen  109 IGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCV  182 (745)
T ss_pred             cCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhhe
Confidence            888887 999999999999975  56777799999999999999987 8999999999999985  77899999999999


Q ss_pred             EEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEE-eecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCC
Q 010296          308 LTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCC-FISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHP  386 (513)
Q Consensus       308 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  386 (513)
                      +.+++.+++.|++|+.||.|++|++.........+|...+.++. +.+++.+++++.|++++||+..  .+.+.+.....
T Consensus       183 RgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt  260 (745)
T KOG0301|consen  183 RGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT  260 (745)
T ss_pred             eeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc
Confidence            99999999999999999999999998777889999999999999 4455678999999999999976  66666654332


Q ss_pred             cccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296          387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       387 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~  453 (513)
                      .                                     |+++.+-++|. |++|+.||.||||....
T Consensus       261 s-------------------------------------iWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  261 S-------------------------------------IWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             c-------------------------------------eEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            2                                     88999888885 67788899999999873

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.5e-27  Score=215.49  Aligned_cols=334  Identities=19%  Similarity=0.297  Sum_probs=237.7

Q ss_pred             hcCceeEEeeccccCCC---cccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCc--cccccCCChhhhc
Q 010296          131 ESGRVRRVIASRVQKPE---ATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK--GVKYLWPSEEVLK  205 (513)
Q Consensus       131 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~  205 (513)
                      ..||..-+..+.+....   ....+..++.|...|+.++...+++.|++++.|-+|++|+...+.  ++.          
T Consensus        42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s----------  111 (735)
T KOG0308|consen   42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS----------  111 (735)
T ss_pred             ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh----------
Confidence            34555445544443222   233578899999999999999999999999999999999998763  333          


Q ss_pred             cCCCCCCCCCCCCCcccEEEEEE-cCCCCEEEEEeCCCcEEEEeCCCcc--ee--------eecc-CcCCCeEEEEEecC
Q 010296          206 SHGAKDPQGRATKQSKHILALAV-SSDGRYLASGGLDRHIHLWDTRIQE--HI--------QAFP-GHRGPVSCLTFRQG  273 (513)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~i~vwd~~~~~--~~--------~~~~-~~~~~v~~~~~~~~  273 (513)
                               .+..|..-|.|+++ .++..++|+|+.|+.|.+||++++.  .+        ..+. ++..+|++++.++.
T Consensus       112 ---------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t  182 (735)
T KOG0308|consen  112 ---------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT  182 (735)
T ss_pred             ---------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence                     34789999999999 7888999999999999999999772  22        2233 78889999999999


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEE
Q 010296          274 TSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCC  351 (513)
Q Consensus       274 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~  351 (513)
                      |..|++|+..+.|++||.++.+.+..+.+|...|.++..+++| +++++++||+|++||+....++ ++..|...++++.
T Consensus       183 ~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~  262 (735)
T KOG0308|consen  183 GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ  262 (735)
T ss_pred             ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence            9999999999999999999999999999999999999999988 7889999999999999988877 7888888999999


Q ss_pred             eecCC-eEEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcC-ccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296          352 FISND-EFLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEG-KISNGHSENGNLNPGSYHSSSAYSWVSSV  428 (513)
Q Consensus       352 ~~~~~-~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  428 (513)
                      .+|.= .+.+|+.||.|..=|+++. +....++..++...-.. ...+.+ .+....+.-..+.           .....
T Consensus       263 ~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~-~~~~~~~WvtTtds~I~rW~-----------~~~~~  330 (735)
T KOG0308|consen  263 SSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHL-HEHDNSVWVTTTDSSIKRWK-----------LEPDI  330 (735)
T ss_pred             eCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhh-ccccCCceeeeccccceecC-----------Ccccc
Confidence            98775 4889999999999999984 44444444433211000 000000 0000000000000           01122


Q ss_pred             EEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          429 TVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       429 ~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      .+++.+.+.. -+.+....+.+...     .+...++...+|...++-.|.+++++= ...|.+.+||+....+
T Consensus       331 ~l~~s~~~~~-~~T~~~~~~~~~~~-----tp~~vi~Gg~ai~k~~mL~dkRhVlTk-Da~gnv~lwDIl~~~~  397 (735)
T KOG0308|consen  331 ALSVSGDLDF-FSTDSNNHSCDLTN-----TPDSVIPGGAAIKKHAMLNDKRHVLTK-DAKGNVALWDILACVK  397 (735)
T ss_pred             ccccCCCCCc-ccccCCCccccccC-----CCceeccCchhhhhhhhhcCcceEeee-cCCCCEEEEEeeeeee
Confidence            3333333333 22222233333211     111222334456666777888999998 8899999999877654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.1e-27  Score=204.77  Aligned_cols=253  Identities=17%  Similarity=0.297  Sum_probs=209.2

Q ss_pred             eccccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC
Q 010296          140 ASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ  219 (513)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (513)
                      ..++|+.....++.++.+|.+.|..|+++.  ..++++|.|.+|+.|.+... .+.++                    ..
T Consensus        90 ~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~ti--------------------lg  146 (433)
T KOG0268|consen   90 EVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTI--------------------LG  146 (433)
T ss_pred             eEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceee--------------------ec
Confidence            345788999999999999999999999987  77999999999999998763 33322                    23


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeE
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      ...++.|.-+..+..++||+.  .|.|||.....++..+.-....|.++.|+|.... |++|+.|+.|.+||++++.++.
T Consensus       147 ~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~  224 (433)
T KOG0268|consen  147 KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK  224 (433)
T ss_pred             cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc
Confidence            445677777777788999885  5999999999999999888889999999997654 6677799999999999999887


Q ss_pred             EeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296          299 TLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~  374 (513)
                      .+. ....-+.|+|+|.+ .|+++..|..++.||++.....  .+..|.+.|..+.|+|.|. |++|+.|.+|+||..+.
T Consensus       225 KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~  303 (433)
T KOG0268|consen  225 KVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH  303 (433)
T ss_pred             eee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCC
Confidence            765 45556889999966 5668889999999999875443  6788999999999999997 99999999999999988


Q ss_pred             CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      +...-.....                                    .-..|.|+.||.|.+++++||.|+.|++|.....
T Consensus       304 ~~SRdiYhtk------------------------------------RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  304 GHSRDIYHTK------------------------------------RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             CcchhhhhHh------------------------------------hhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence            7644333211                                    1122999999999999999999999999998654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=5.6e-26  Score=189.06  Aligned_cols=303  Identities=17%  Similarity=0.260  Sum_probs=223.2

Q ss_pred             hhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-
Q 010296          153 RVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-  230 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-  230 (513)
                      .....|.+.|+++...+ .|+|+++|+.||.|.|||++.......-    ..+..+..........+|.-.|.++.|-| 
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s----~li~k~~c~v~~~h~~~Hky~iss~~WyP~  112 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS----GLIAKHKCIVAKQHENGHKYAISSAIWYPI  112 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc----cceeheeeeccccCCccceeeeeeeEEeee
Confidence            34557999999999998 5899999999999999999875521100    00000000112224568999999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecC---CCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG---TSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV  307 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  307 (513)
                      |...|.+++.|.+++|||..+.+....|+ -.+.|.+-+|+|-   ..++++|..+-.|++.|+.+|.+.+.+.+|...|
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v  191 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV  191 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence            66788899999999999999999888887 5678888888883   3467788899999999999999999999999999


Q ss_pred             EEEEeeCCCe--EEEEeCCCcEEEEecCCC-eee---------------EEecCCCCeeEEEeecCCe-EEEEeCCCCEE
Q 010296          308 LTIDCLRKER--VLTVGRDRSMQLWKVPEE-SRL---------------VFRAPASSLECCCFISNDE-FLSGSDDGSIE  368 (513)
Q Consensus       308 ~~~~~~~~~~--~~~~~~d~~i~iwd~~~~-~~~---------------~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~  368 (513)
                      .++.|+|...  |++++.||.|++||++.. .+.               ....|.+.+..++|..++. +++++.|..++
T Consensus       192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r  271 (397)
T KOG4283|consen  192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR  271 (397)
T ss_pred             EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence            9999999763  448899999999999754 111               1234667889999999986 78999999999


Q ss_pred             EEecCCCCeeEEeec--CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296          369 LWSLLRKKPVYIVKN--AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV  446 (513)
Q Consensus       369 iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v  446 (513)
                      +|+..+|.....-..  .+..                               ..+.. +. +. +.+...++---.++.+
T Consensus       272 ~wn~~~G~ntl~~~g~~~~n~-------------------------------~~~~~-~~-~~-~~~s~vfv~~p~~~~l  317 (397)
T KOG4283|consen  272 VWNMESGRNTLREFGPIIHNQ-------------------------------TTSFA-VH-IQ-SMDSDVFVLFPNDGSL  317 (397)
T ss_pred             EeecccCcccccccccccccc-------------------------------cccce-EE-Ee-ecccceEEEEecCCeE
Confidence            999988753221110  0000                               00000 11 22 2233344444445788


Q ss_pred             EEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .++++-++ ..+..+..  |...|.|.++-|+-+.+.++ ..|+.|..|-..
T Consensus       318 all~~~sg-s~ir~l~~--h~k~i~c~~~~~~fq~~~tg-~~d~ni~~w~p~  365 (397)
T KOG4283|consen  318 ALLNLLEG-SFVRRLST--HLKRINCAAYRPDFEQCFTG-DMNGNIYMWSPA  365 (397)
T ss_pred             EEEEccCc-eEEEeeec--ccceeeEEeecCchhhhhcc-ccCCcccccccc
Confidence            88888777 33444443  67789999999999999999 999999999763

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=4.4e-25  Score=196.69  Aligned_cols=298  Identities=17%  Similarity=0.274  Sum_probs=232.8

Q ss_pred             eccccCCCcccchhhhhccCCCeEEEEECC--CCCeEEEE--eCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCC
Q 010296          140 ASRVQKPEATDEFRVLLKHRQSVTAVALSE--DDSKGFSA--SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGR  215 (513)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (513)
                      -.++|+......++.+......|+|++|++  .|.+|+..  +.+..+.|||.+.+......                  
T Consensus       135 hvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v------------------  196 (626)
T KOG2106|consen  135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV------------------  196 (626)
T ss_pred             eeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcc------------------
Confidence            345678777777888877888999999998  35565543  56778999999877654422                  


Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeee---ccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeC
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA---FPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNA  291 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  291 (513)
                       ...+..|....|+|....|++....+.+.+|+++.+.....   |.. ....|.|++|.++|. +++|.++|.|.||+.
T Consensus       197 -k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~  274 (626)
T KOG2106|consen  197 -KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSK  274 (626)
T ss_pred             -eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeC
Confidence             34566789999999665555544578999999988765543   333 235799999999876 789999999999999


Q ss_pred             CCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCe-----------------------------------
Q 010296          292 EDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES-----------------------------------  336 (513)
Q Consensus       292 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~-----------------------------------  336 (513)
                      .+.+..+....|.+.|.+++...+|.+++++.|+.|..||-.-.+                                   
T Consensus       275 ~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G  354 (626)
T KOG2106|consen  275 GTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG  354 (626)
T ss_pred             CCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence            988887777799999999999999999999999999999832110                                   


Q ss_pred             ------eeEEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCC
Q 010296          337 ------RLVFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENG  409 (513)
Q Consensus       337 ------~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  409 (513)
                            .+...+|......++.+|.. .|++++.|+.+++|+  ..++..+.....+                       
T Consensus       355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~-----------------------  409 (626)
T KOG2106|consen  355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDP-----------------------  409 (626)
T ss_pred             eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCc-----------------------
Confidence                  01123455667778888876 488999999999999  5566655544333                       


Q ss_pred             CCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCC
Q 010296          410 NLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQE  489 (513)
Q Consensus       410 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~d  489 (513)
                                     +.|+.|+|.| .+|.|...|...+.|+.+. ..+. +..  ...++++|+|+|+|.+||+| +.|
T Consensus       410 ---------------~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~-~~~--d~~~ls~v~ysp~G~~lAvg-s~d  468 (626)
T KOG2106|consen  410 ---------------AECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVT-IHT--DNEQLSVVRYSPDGAFLAVG-SHD  468 (626)
T ss_pred             ---------------eeEeeccCcc-eEEEeeccceEEEEecccc-eeEE-EEe--cCCceEEEEEcCCCCEEEEe-cCC
Confidence                           8899999999 9999999999999999885 3332 322  37899999999999999999 999


Q ss_pred             CcccccccCCCccc
Q 010296          490 PRLGRWGHLPAARN  503 (513)
Q Consensus       490 g~v~~W~~~~~~~~  503 (513)
                      +.|.||.+..+.+.
T Consensus       469 ~~iyiy~Vs~~g~~  482 (626)
T KOG2106|consen  469 NHIYIYRVSANGRK  482 (626)
T ss_pred             CeEEEEEECCCCcE
Confidence            99999988766543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.9e-25  Score=177.15  Aligned_cols=251  Identities=22%  Similarity=0.250  Sum_probs=201.7

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      .....-+.|.+.|+|.+|+|+|.+|+||+.|.+|++.-+....+..+              .+...+.-|.+.|..++|-
T Consensus        80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~--------------g~dle~nmhdgtirdl~fl  145 (350)
T KOG0641|consen   80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT--------------GHDLEFNMHDGTIRDLAFL  145 (350)
T ss_pred             EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc--------------CcceeeeecCCceeeeEEe
Confidence            33455668999999999999999999999999999987765443321              1222456788999999996


Q ss_pred             CC----CCEEEEEe-CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec--
Q 010296          230 SD----GRYLASGG-LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG--  302 (513)
Q Consensus       230 ~~----~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--  302 (513)
                      .+    +.+|++++ .|..|++-|...|+..+.+.+|++.|.++ ++-++-.+++|+.|.+|++||++-..++.++..  
T Consensus       146 d~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~  224 (350)
T KOG0641|consen  146 DDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF  224 (350)
T ss_pred             cCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcc
Confidence            53    55777765 47788888999999999999999999876 334678899999999999999999888877632  


Q ss_pred             -----ccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296          303 -----HQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       303 -----~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~  374 (513)
                           ....|.+++..|.|+++ ++-.|..+.+||++.+..+ .+..|...|.|+.|+|... +++++.|..|++-|+..
T Consensus       225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence                 23578999999999877 6667999999999999877 6778889999999999986 77999999999999865


Q ss_pred             CC----eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          375 KK----PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       375 ~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      .-    ++...                                     ..|...+..+.|+|..--+++.+.|.++.+|-
T Consensus       305 dla~el~~~vv-------------------------------------~ehkdk~i~~rwh~~d~sfisssadkt~tlwa  347 (350)
T KOG0641|consen  305 DLAHELPIMVV-------------------------------------AEHKDKAIQCRWHPQDFSFISSSADKTATLWA  347 (350)
T ss_pred             chhhcCceEEE-------------------------------------EeccCceEEEEecCccceeeeccCcceEEEec
Confidence            31    22222                                     33444488899999998899999999999998


Q ss_pred             eC
Q 010296          451 IE  452 (513)
Q Consensus       451 ~~  452 (513)
                      ++
T Consensus       348 ~~  349 (350)
T KOG0641|consen  348 LN  349 (350)
T ss_pred             cC
Confidence            64

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=2.1e-26  Score=209.19  Aligned_cols=292  Identities=17%  Similarity=0.183  Sum_probs=223.8

Q ss_pred             CCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE
Q 010296          145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL  224 (513)
Q Consensus       145 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  224 (513)
                      .+.+..+...+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.++.++                    ...+.|.
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--------------------~~d~~I~  445 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--------------------QFDSEIR  445 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--------------------eecceeE
Confidence            44566777788999999999999999999999999999999999999999865                    3355799


Q ss_pred             EEEEcCCCC--EEEEEeCCCcEEEEeCCCcc-------------------------------------eeeeccCcCCCe
Q 010296          225 ALAVSSDGR--YLASGGLDRHIHLWDTRIQE-------------------------------------HIQAFPGHRGPV  265 (513)
Q Consensus       225 ~~~~s~~~~--~l~s~~~dg~i~vwd~~~~~-------------------------------------~~~~~~~~~~~v  265 (513)
                      ||+|+|.+.  .||++-. ..+.|.+..-|.                                     -+...-.|...|
T Consensus       446 ~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i  524 (733)
T KOG0650|consen  446 SVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI  524 (733)
T ss_pred             EEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc
Confidence            999999765  3444433 335554422110                                     011222377889


Q ss_pred             EEEEEecCCCeEEEEeC---CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEe
Q 010296          266 SCLTFRQGTSELFSGSF---DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFR  341 (513)
Q Consensus       266 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~  341 (513)
                      ..|.|+..|.||++...   ...|.|+++.......-|....+.|.++.|+|....+..+....|++||+.....+ .+.
T Consensus       525 ~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~  604 (733)
T KOG0650|consen  525 RQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLL  604 (733)
T ss_pred             ceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHh
Confidence            99999999999998765   35799999987776666666788899999999877676677789999999875544 334


Q ss_pred             cCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCC
Q 010296          342 APASSLECCCFISND-EFLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSS  419 (513)
Q Consensus       342 ~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  419 (513)
                      .....|..++++|.| .+++|+.|+.+..||+.-. ++..++.                                     
T Consensus       605 tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr-------------------------------------  647 (733)
T KOG0650|consen  605 TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR-------------------------------------  647 (733)
T ss_pred             cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh-------------------------------------
Confidence            445578889999988 5999999999999999765 4444443                                     


Q ss_pred             CCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC-----CcceeeeeecC-cc----cEEEEEEeecCCCEEEEEecCC
Q 010296          420 SAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE-----TKDIQPLYNLP-LV----GFVNSLAFAKSGQFLIAGVGQE  489 (513)
Q Consensus       420 ~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~-----~~~~~~~~~~~-~~----~~v~~v~~sp~~~~l~~~~~~d  489 (513)
                      -|...+++++|++.-.+|++|+.||++.|+.-.--     ...+.++..+. |.    ..|..+.|+|...+|+++ |.|
T Consensus       648 ~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsA-GAd  726 (733)
T KOG0650|consen  648 LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSA-GAD  726 (733)
T ss_pred             hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEec-CCC
Confidence            23344999999999999999999999999874321     12344444332 32    348889999999999999 999


Q ss_pred             Cccccc
Q 010296          490 PRLGRW  495 (513)
Q Consensus       490 g~v~~W  495 (513)
                      |+|++|
T Consensus       727 ~tirlf  732 (733)
T KOG0650|consen  727 GTIRLF  732 (733)
T ss_pred             ceEEee
Confidence            999999

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=1.5e-26  Score=203.88  Aligned_cols=266  Identities=17%  Similarity=0.224  Sum_probs=204.8

Q ss_pred             hccCCCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CC
Q 010296          156 LKHRQSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GR  233 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~  233 (513)
                      .-|.+.|+.+.+-|... .+||.+..+.|.|||..........         .+...|...+.+|...-++|+|++. ..
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~~~~g  191 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNRQQEG  191 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccccccce
Confidence            46999999999999665 5557788999999998765433211         1123455577889988899999995 45


Q ss_pred             EEEEEeCCCcEEEEeCCCcc-------eeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCC--CCceeEEeecc
Q 010296          234 YLASGGLDRHIHLWDTRIQE-------HIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAE--DRAYISTLFGH  303 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~  303 (513)
                      +|++++.|+.|++||+....       +...+.+|...|..++|++-. ..|++++.|+.+.|||++  +.++.....+|
T Consensus       192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah  271 (422)
T KOG0264|consen  192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH  271 (422)
T ss_pred             eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc
Confidence            79999999999999987432       346678899999999999954 567799999999999999  55666777889


Q ss_pred             cCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCee--eEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCe
Q 010296          304 QSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESR--LVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       304 ~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~  377 (513)
                      .+.|.|++|+|-+  .|++++.|++|.+||++....  ..+..|...|.++.|+|...  |++++.|+.+.|||+..-..
T Consensus       272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~  351 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE  351 (422)
T ss_pred             CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence            9999999999943  455888999999999987554  47889999999999999874  78999999999999876332


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCE-EEEecCCCcEEEEEeCC
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDL-AASGAGNGSVRLWAIES  453 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~g~~dg~v~vwd~~~  453 (513)
                      .+.-......                       ..-..|...+|...|..+.|+|+..+ |++.+.|+.+.||....
T Consensus       352 eq~~eda~dg-----------------------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  352 EQSPEDAEDG-----------------------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccChhhhccC-----------------------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            2211100000                       00011233678888999999998865 66778999999999864

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.2e-25  Score=187.91  Aligned_cols=244  Identities=20%  Similarity=0.282  Sum_probs=189.2

Q ss_pred             CCcccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-ccee-eeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          218 KQSKHILALAVSS-DGRYLASGGLDRHIHLWDTRI-QEHI-QAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       218 ~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      .....|.+|+||| ...+|++++.||+|++|+++. +..+ .....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            4567899999999 556677999999999999986 3333 334569999999999999999999999999999999999


Q ss_pred             ceeEEeecccCCeEEEEeeCCC---eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEe
Q 010296          295 AYISTLFGHQSEVLTIDCLRKE---RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWS  371 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd  371 (513)
                      + +..+..|..+|.++.|.+..   .|++|+.|.+|++||++....+........+.++..-. ..++++..+..|.+|+
T Consensus       105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~-pm~vVata~r~i~vyn  182 (347)
T KOG0647|consen  105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY-PMAVVATAERHIAVYN  182 (347)
T ss_pred             C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC-ceeEEEecCCcEEEEE
Confidence            5 55667799999999998754   46799999999999999888776666666666654432 2477888999999999


Q ss_pred             cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      +.++........                                   ....-.+.|++..++....+.|+-.|.+-|..+
T Consensus       183 L~n~~te~k~~~-----------------------------------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i  227 (347)
T KOG0647|consen  183 LENPPTEFKRIE-----------------------------------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI  227 (347)
T ss_pred             cCCCcchhhhhc-----------------------------------CcccceeeEEEEEecCCceEeeeecceEEEEec
Confidence            977643222110                                   111222899999999988999999999999999


Q ss_pred             CCCCcce-eeeeecC-------cccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          452 ESETKDI-QPLYNLP-------LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       452 ~~~~~~~-~~~~~~~-------~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      ..+.... -.+....       .-..|++|+|+|....|+++ |.||++.+||...
T Consensus       228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTa-GsDGtf~FWDkda  282 (347)
T KOG0647|consen  228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTA-GSDGTFSFWDKDA  282 (347)
T ss_pred             CCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEe-cCCceEEEecchh
Confidence            8752211 1111111       13468999999999999999 9999999998754

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=6.2e-26  Score=200.00  Aligned_cols=246  Identities=17%  Similarity=0.281  Sum_probs=196.6

Q ss_pred             CCCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCcc----------eeeeccCcCCCeEEEEEecCC-CeEEEEeCC
Q 010296          216 ATKQSKHILALAVSSDG-RYLASGGLDRHIHLWDTRIQE----------HIQAFPGHRGPVSCLTFRQGT-SELFSGSFD  283 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  283 (513)
                      ...|.+.|+.+.+-|+. ..+|+++..+.|+|||.....          +-.++.+|...-.+|+|++.. -+|++++.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            35688899999999965 466777888999999975322          223678898878889998864 468899999


Q ss_pred             CcEEEEeCCCCc-------eeEEeecccCCeEEEEeeCC--CeEEEEeCCCcEEEEecCCC--ee-eEEecCCCCeeEEE
Q 010296          284 RTVKIWNAEDRA-------YISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEE--SR-LVFRAPASSLECCC  351 (513)
Q Consensus       284 g~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~--~~-~~~~~~~~~v~~~~  351 (513)
                      ++|++||+....       ....+.+|...|..++|++-  ..|.+++.|+.+.|||++++  +. .....|...+.|++
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~  279 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA  279 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence            999999997532       34567899999999999984  45669999999999999953  22 25678899999999


Q ss_pred             eecCCe--EEEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296          352 FISNDE--FLSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV  428 (513)
Q Consensus       352 ~~~~~~--~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  428 (513)
                      |+|-+.  |++|+.|++|.+||+++.. ++.++                                     ..|...|.+|
T Consensus       280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~-------------------------------------e~H~dev~~V  322 (422)
T KOG0264|consen  280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTF-------------------------------------EGHEDEVFQV  322 (422)
T ss_pred             eCCCCCceEEeccCCCcEEEeechhcccCceec-------------------------------------cCCCcceEEE
Confidence            999764  7799999999999999864 44444                                     4555569999


Q ss_pred             EEecCC-CEEEEecCCCcEEEEEeCCCCcc----------eee-eeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          429 TVCGGS-DLAASGAGNGSVRLWAIESETKD----------IQP-LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       429 ~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~----------~~~-~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      .|||.. ..||+++.|+.+.|||+..-...          ... +..-.|...|..+.|+|+..+++++.+.|+.+.||.
T Consensus       323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence            999965 68899999999999999754221          122 333347889999999999999999989999999998


Q ss_pred             cC
Q 010296          497 HL  498 (513)
Q Consensus       497 ~~  498 (513)
                      ..
T Consensus       403 ~s  404 (422)
T KOG0264|consen  403 MA  404 (422)
T ss_pred             cc
Confidence            75

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=1.7e-25  Score=197.12  Aligned_cols=299  Identities=14%  Similarity=0.150  Sum_probs=227.1

Q ss_pred             ccchhhhhccCCCeEEEEECCCC--CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDD--SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL  226 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (513)
                      ......++-|.++|++++|+|..  +++|+|..-|+|-+||+.+.+...               .....+..|..+|.+|
T Consensus       176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---------------d~v~~f~~hs~~Vs~l  240 (498)
T KOG4328|consen  176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---------------DGVYLFTPHSGPVSGL  240 (498)
T ss_pred             ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---------------CceEEeccCCccccce
Confidence            34455667899999999999965  578899999999999996332211               0111356899999999


Q ss_pred             EEcCC-CCEEEEEeCCCcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce-eEEeec
Q 010296          227 AVSSD-GRYLASGGLDRHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY-ISTLFG  302 (513)
Q Consensus       227 ~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~  302 (513)
                      .|+|. -..+++.+.||+|++-|++.+..-.  .+......+..+.|+.+...++.+..=|...+||++++.. ...+..
T Consensus       241 ~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l  320 (498)
T KOG4328|consen  241 KFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL  320 (498)
T ss_pred             EecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence            99994 5689999999999999998765433  3333455677888988888888888888999999998665 566677


Q ss_pred             ccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCe-----eeEEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecC-
Q 010296          303 HQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEES-----RLVFRAPASSLECCCFISND-EFLSGSDDGSIELWSLL-  373 (513)
Q Consensus       303 ~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~-  373 (513)
                      |...|.+++++|..  .+++++.|++++|||++.-.     .+....|...|.++.|+|.+ .+++.+.|..|+|||.. 
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~  400 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC  400 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence            88899999999954  67799999999999997532     24566788899999999986 59999999999999983 


Q ss_pred             ---CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce--EEEEEEecCCCEEEEecCCCcEEE
Q 010296          374 ---RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW--VSSVTVCGGSDLAASGAGNGSVRL  448 (513)
Q Consensus       374 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~~g~~dg~v~v  448 (513)
                         .-.+..++...+.                                  +..|  .....|.|+..++++|..-..|-|
T Consensus       401 ~sa~~~p~~~I~Hn~~----------------------------------t~RwlT~fKA~W~P~~~li~vg~~~r~IDv  446 (498)
T KOG4328|consen  401 ISAKDEPLGTIPHNNR----------------------------------TGRWLTPFKAAWDPDYNLIVVGRYPRPIDV  446 (498)
T ss_pred             ccccCCccceeeccCc----------------------------------ccccccchhheeCCCccEEEEeccCcceeE
Confidence               4445555543322                                  1122  445689999999999999889999


Q ss_pred             EEeCCCCcceeeeeecCcccEEEE-EEeecCCCEEEEEecCCCcccccccC
Q 010296          449 WAIESETKDIQPLYNLPLVGFVNS-LAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       449 wd~~~~~~~~~~~~~~~~~~~v~~-v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      +|-..+ +.+..+.. +....|.+ ..|+|-+..+++|++..|.|.||...
T Consensus       447 ~~~~~~-q~v~el~~-P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  447 FDGNGG-QMVCELHD-PESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             EcCCCC-EEeeeccC-ccccccccceeecccccceeccCCccceEEEEecC
Confidence            998776 33333332 22333443 58999998888888899999999543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.8e-26  Score=211.47  Aligned_cols=286  Identities=15%  Similarity=0.244  Sum_probs=220.0

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRYLAS  237 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s  237 (513)
                      ....++|..+++-..|+.++. ..++||.+..........     +. .      .........+..++|+. ..++||+
T Consensus        39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~-----~~-~------k~kqn~~~S~~DVkW~~~~~NlIAT  105 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCN-----HR-F------KTKQNKFYSAADVKWGQLYSNLIAT  105 (839)
T ss_pred             ccccceEeecCCcceeEEecc-cceeeEeeCcccCCccee-----ee-c------ccccceeeehhhcccccchhhhhee
Confidence            456778888899888998886 467888776443211100     00 0      00011122355677875 4679999


Q ss_pred             EeCCCcEEEEeCCC---cceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEee
Q 010296          238 GGLDRHIHLWDTRI---QEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL  313 (513)
Q Consensus       238 ~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  313 (513)
                      ++..|.|.+||+..   .+.+..|..|...++++.|++.. .+|++|+.||+|++||++......++.+....|+.+.|+
T Consensus       106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs  185 (839)
T KOG0269|consen  106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS  185 (839)
T ss_pred             ecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence            99999999999986   56777899999999999999865 567899999999999999999999999889999999999


Q ss_pred             CC--CeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCC--eeEEeecCCC
Q 010296          314 RK--ERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKK--PVYIVKNAHP  386 (513)
Q Consensus       314 ~~--~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~  386 (513)
                      |.  ..|+++...|.+++||++.....  .+..|.++|.|+.|+|++. |++|+.|+.|+||++.+.+  ++.++...  
T Consensus       186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi--  263 (839)
T KOG0269|consen  186 PGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI--  263 (839)
T ss_pred             cCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec--
Confidence            84  57889999999999999976654  6789999999999999875 7899999999999998654  34444332  


Q ss_pred             cccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EEEEec--CCCcEEEEEeCCCCcceeeeee
Q 010296          387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LAASGA--GNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       387 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~--~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                                                          .+|.++.|-|... .||+++  .|-.|+|||++..--+...+..
T Consensus       264 ------------------------------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e  307 (839)
T KOG0269|consen  264 ------------------------------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE  307 (839)
T ss_pred             ------------------------------------ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence                                                2399999999775 466654  5778999999987555555554


Q ss_pred             cCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                        |...++.++|-.....++-.++.||+|..-.+
T Consensus       308 --H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  308 --HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             --cCccccceeccCCCceeeEeecCccHHHHhhh
Confidence              88899999997755555555599998865533

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=8.5e-26  Score=201.02  Aligned_cols=255  Identities=16%  Similarity=0.297  Sum_probs=212.7

Q ss_pred             ccccCCCcccchhhhhc--cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCC
Q 010296          141 SRVQKPEATDEFRVLLK--HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATK  218 (513)
Q Consensus       141 ~~~~~~~~~~~~~~~~~--h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (513)
                      |.+..+....++..|..  -..-|.++.+.|||+.|++|+.-.+|.|||+.........                 .+..
T Consensus       445 Wdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprika-----------------elts  507 (705)
T KOG0639|consen  445 WDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA-----------------ELTS  507 (705)
T ss_pred             eeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhh-----------------hcCC
Confidence            33333333334444433  3467999999999999999999999999999876543211                 1223


Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      ..-.+++++.+||.+.++++..||.|.|||+.+...++.|++|...+.||.++++|..|.+|+-|++|+.||+++++.+.
T Consensus       508 sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq  587 (705)
T KOG0639|consen  508 SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ  587 (705)
T ss_pred             cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh
Confidence            34468899999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             EeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCC
Q 010296          299 TLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKK  376 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~  376 (513)
                      ... ....|.++.++|.+..+ +|-..+.+-+..........+..|.+-|.++.|.+.|+ |++.+.|..+..|...-|.
T Consensus       588 qhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa  666 (705)
T KOG0639|consen  588 QHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  666 (705)
T ss_pred             hhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence            543 67789999999988665 55578889998888888888888999999999999997 7899999999999999888


Q ss_pred             eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      .++..+....                                      |.++.+|.+.++|+||+.|....||.+
T Consensus       667 siFqskE~Ss--------------------------------------VlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  667 SIFQSKESSS--------------------------------------VLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ceeeccccCc--------------------------------------ceeeeeccCceEEEecCCCcceEEEEE
Confidence            8776654332                                      999999999999999999998888875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.1e-24  Score=199.18  Aligned_cols=283  Identities=17%  Similarity=0.220  Sum_probs=228.7

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      .--..+|.||||+.+.+.||.+-.+|.|-||++..+=.....                 ...+....|.+++|++ +..|
T Consensus        22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v-----------------i~g~~drsIE~L~W~e-~~RL   83 (691)
T KOG2048|consen   22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV-----------------IHGPEDRSIESLAWAE-GGRL   83 (691)
T ss_pred             eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEE-----------------EecCCCCceeeEEEcc-CCeE
Confidence            344688999999999999999999999999999875433322                 1124466799999995 5567


Q ss_pred             EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE--EeecccCCeEEEEee
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS--TLFGHQSEVLTIDCL  313 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~  313 (513)
                      ++.+.+|.|.-||+.++++...+....+.|++++.+|.+..++.|+.||.+..++...++...  .+....+.|.++.|+
T Consensus        84 FS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~  163 (691)
T KOG2048|consen   84 FSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN  163 (691)
T ss_pred             EeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence            788889999999999999999999999999999999999999999999988888887776543  345567899999999


Q ss_pred             CCCe-EEEEeCCCcEEEEecCCCeeeE-----Eec----CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          314 RKER-VLTVGRDRSMQLWKVPEESRLV-----FRA----PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       314 ~~~~-~~~~~~d~~i~iwd~~~~~~~~-----~~~----~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      |++. +++|+.||.|++||...+....     ...    ...-|+++.+..++.+++|.+-|+|.+||...+..+..+..
T Consensus       164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~  243 (691)
T KOG2048|consen  164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC  243 (691)
T ss_pred             CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhh
Confidence            9986 8899999999999999887654     111    23457788888999999999999999999999988777654


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee-ee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP-LY  462 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~-~~  462 (513)
                      +.                                     .-|.+++..+++.++++++.|+.|..|...+....+.. ..
T Consensus       244 h~-------------------------------------adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~  286 (691)
T KOG2048|consen  244 HD-------------------------------------ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSR  286 (691)
T ss_pred             hh-------------------------------------cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeecc
Confidence            33                                     33999999999999999999999999998876442222 22


Q ss_pred             ecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          463 NLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       463 ~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      ...|...|.+++..++  .|++| |.|+.|.+=.
T Consensus       287 r~~h~hdvrs~av~~~--~l~sg-G~d~~l~i~~  317 (691)
T KOG2048|consen  287 RDLHAHDVRSMAVIEN--ALISG-GRDFTLAICS  317 (691)
T ss_pred             ccCCcccceeeeeecc--eEEec-ceeeEEEEcc
Confidence            2336788999999887  66666 8888776653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.7e-25  Score=195.53  Aligned_cols=263  Identities=17%  Similarity=0.307  Sum_probs=204.4

Q ss_pred             EeCC-ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcce
Q 010296          177 ASKD-GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG-LDRHIHLWDTRIQEH  254 (513)
Q Consensus       177 ~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~  254 (513)
                      ++.| ..+.+||+.+|.....+.+...             ..+|     ++..- .+.+++++. ....|.+|.+.....
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~-------------a~~~-----sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~   73 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYL-------------AQAA-----SLTAL-NNEYLLSAQLKRPLLHVWEILKKDQ   73 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCccc-------------ccch-----hhhhh-chhheeeecccCccccccccCchhh
Confidence            3444 4599999999987766522100             0011     11111 235666654 456899999876655


Q ss_pred             eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecC
Q 010296          255 IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVP  333 (513)
Q Consensus       255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~  333 (513)
                      .....--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.|+ .|++++.||.|.+|.+.
T Consensus        74 ~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   74 VVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             hhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence            54344467889999999999999999999999999999999999999999999999999987 56699999999999873


Q ss_pred             C----------CeeeEEecCCCCeeEEEeecCC---eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCc
Q 010296          334 E----------ESRLVFRAPASSLECCCFISND---EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGK  400 (513)
Q Consensus       334 ~----------~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (513)
                      .          .....+..|.-+|+.+...+.|   ++++++.|.++++||+..+..+.++.....              
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s--------------  219 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS--------------  219 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc--------------
Confidence            2          1123677888899999888765   589999999999999999998888765443              


Q ss_pred             cccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC---------------cceeeeeecC
Q 010296          401 ISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET---------------KDIQPLYNLP  465 (513)
Q Consensus       401 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~---------------~~~~~~~~~~  465 (513)
                                              +.++++.|..+.+++|+.+|.|.+.++....               ..+..+.  .
T Consensus       220 ------------------------i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~--G  273 (476)
T KOG0646|consen  220 ------------------------IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV--G  273 (476)
T ss_pred             ------------------------ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec--c
Confidence                                    9999999999999999999999999886542               0111122  2


Q ss_pred             ccc--EEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          466 LVG--FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       466 ~~~--~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      |.+  .|+|++++-||..|++| +.||.|++||+..
T Consensus       274 h~~~~~ITcLais~DgtlLlSG-d~dg~VcvWdi~S  308 (476)
T KOG0646|consen  274 HENESAITCLAISTDGTLLLSG-DEDGKVCVWDIYS  308 (476)
T ss_pred             ccCCcceeEEEEecCccEEEee-CCCCCEEEEecch
Confidence            555  89999999999999999 9999999999753

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.94  E-value=2.5e-25  Score=187.98  Aligned_cols=307  Identities=19%  Similarity=0.344  Sum_probs=218.5

Q ss_pred             hhhccCCCeEEEEECC-----CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          154 VLLKHRQSVTAVALSE-----DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~-----~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ....|+.+|..++|++     .-..++|+|. ..+.+|.......+..+       ..       ..-..|....+.++|
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~l-------q~-------y~D~d~~Esfytcsw   97 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLL-------QS-------YADEDHDESFYTCSW   97 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeee-------ee-------ccCCCCCcceEEEEE
Confidence            4557899999999985     2345666664 57888887654422221       00       012246777888888


Q ss_pred             cCC----CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEe---
Q 010296          229 SSD----GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTL---  300 (513)
Q Consensus       229 s~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~---  300 (513)
                      +-+    ..+||.|+.-|.|+|.|+.++++...+.+|...|+.+.|+|.. +++++++.|.+|++|++++..++..+   
T Consensus        98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~  177 (385)
T KOG1034|consen   98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV  177 (385)
T ss_pred             EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence            763    4588999999999999999999999999999999999999976 57889999999999999999998876   


Q ss_pred             ecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-----------------------------EEecCCCCeeEE
Q 010296          301 FGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-----------------------------VFRAPASSLECC  350 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-----------------------------~~~~~~~~v~~~  350 (513)
                      .+|...|.++.|++++ +++++|.|.+|++|++......                             ....|...|.|+
T Consensus       178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv  257 (385)
T KOG1034|consen  178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV  257 (385)
T ss_pred             ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence            5799999999999987 6779999999999999743211                             011233344444


Q ss_pred             EeecCCeEEEEeCCCCEEEEecC-CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEE
Q 010296          351 CFISNDEFLSGSDDGSIELWSLL-RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVT  429 (513)
Q Consensus       351 ~~~~~~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~  429 (513)
                      .|.- ..+++-+-++.|..|... -.+.+..++.......-+.                      .+.-....-|....+
T Consensus       258 rw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~----------------------~~~~~~c~iWfirf~  314 (385)
T KOG1034|consen  258 RWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILG----------------------EFDYPMCDIWFIRFA  314 (385)
T ss_pred             HHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeee----------------------EeccCccceEEEEEe
Confidence            4443 246677788899999873 2222222211111100000                      010122233455667


Q ss_pred             EecCCCEEEEecCCCcEEEEEeCCCCcc-eeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          430 VCGGSDLAASGAGNGSVRLWAIESETKD-IQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       430 ~s~~~~~l~~g~~dg~v~vwd~~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      |.|-+++||.|...|.|++||+...... ..++........|...+||.||.+|+.. .+|++|..||...
T Consensus       315 ~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v-cdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  315 FDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV-CDDGTVWRWDRVS  384 (385)
T ss_pred             ecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEE-eCCCcEEEEEeec
Confidence            7788899999999999999999887442 2233333346789999999999999988 8999999998653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.3e-24  Score=182.41  Aligned_cols=243  Identities=15%  Similarity=0.229  Sum_probs=192.0

Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      ....|.+|.|+|.+..|+++++||++++|++........++ |..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence            36679999999999999999999999999999887766666 999999999987 4679999999999999999886543


Q ss_pred             EeecccCCeEEEEeeC-CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCe
Q 010296          299 TLFGHQSEVLTIDCLR-KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  377 (513)
                       +..|..+|.||.+++ .+.+++++.|++|++||.+.............|.++.... ..|++|+.+..|.+||+++...
T Consensus        90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g-~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen   90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG-NRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             -eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccC-CEEEEeecCceEEEEEcccccc
Confidence             456999999999987 5789999999999999999755544344444777776643 3688999999999999998764


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC---
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE---  454 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~---  454 (513)
                      ......                                   ......+.|+++-|++.=+++++-||.|.+=.++..   
T Consensus       168 ~~q~re-----------------------------------S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~  212 (323)
T KOG1036|consen  168 PFQRRE-----------------------------------SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA  212 (323)
T ss_pred             hhhhcc-----------------------------------ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH
Confidence            442221                                   222234999999998888999999999888666554   


Q ss_pred             -Ccceeeeee-------cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          455 -TKDIQPLYN-------LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       455 -~~~~~~~~~-------~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                       .+.. .+..       ....-+|++++|+|-...||+| |.||.|.+||..+..+
T Consensus       213 ~skky-aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTg-GsDG~V~~Wd~~~rKr  266 (323)
T KOG1036|consen  213 QSKKY-AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATG-GSDGIVNIWDLFNRKR  266 (323)
T ss_pred             hhhce-eEEeeecccCCceEEEEeceeEeccccceEEec-CCCceEEEccCcchhh
Confidence             1111 1111       1123589999999999999999 9999999999876544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.9e-25  Score=183.94  Aligned_cols=286  Identities=11%  Similarity=0.121  Sum_probs=206.2

Q ss_pred             eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC
Q 010296          162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD  241 (513)
Q Consensus       162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  241 (513)
                      -.|+.|++.|.+||+|+.||.|.|||+.+......                   +.+|..+|++++||++|+.|++++.|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~sl~WS~dgr~LltsS~D   86 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPITSLCWSRDGRKLLTSSRD   86 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhh-------------------hhccccceeEEEecCCCCEeeeecCC
Confidence            78999999999999999999999999998775553                   47899999999999999999999999


Q ss_pred             CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccC----CeEEEEeeCCC
Q 010296          242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQS----EVLTIDCLRKE  316 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~  316 (513)
                      ..|.+||+..|.+++.+. ...+|+...|+|.....+ ++-.+..-.+.++..+.....-....+    ...+..|.+.|
T Consensus        87 ~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g  165 (405)
T KOG1273|consen   87 WSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG  165 (405)
T ss_pred             ceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence            999999999999998887 778999999999654433 333444455555554221111111111    11233466666


Q ss_pred             -eEEEEeCCCcEEEEecCCCeee-EEecC-CCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCee---EEeecCCCccc
Q 010296          317 -RVLTVGRDRSMQLWKVPEESRL-VFRAP-ASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPV---YIVKNAHPLLD  389 (513)
Q Consensus       317 -~~~~~~~d~~i~iwd~~~~~~~-~~~~~-~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~  389 (513)
                       .+++|...|.+.+++..+..++ .++.. ...|..+.++..|. |+..+.|..|+.|++..--..   ......+.   
T Consensus       166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K---  242 (405)
T KOG1273|consen  166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK---  242 (405)
T ss_pred             CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH---
Confidence             5568889999999999988776 23333 36788899998886 779999999999997631100   00000000   


Q ss_pred             CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CCcEEEEEeCCCCcceeeeeecCccc
Q 010296          390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NGSVRLWAIESETKDIQPLYNLPLVG  468 (513)
Q Consensus       390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~~  468 (513)
                                                +........-.+++||.+|.|+++|+. -..++||.-..+ ..++.+.+. ...
T Consensus       243 --------------------------~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~-kgE  294 (405)
T KOG1273|consen  243 --------------------------LQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGT-KGE  294 (405)
T ss_pred             --------------------------HHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc-ceeeeecCC-chh
Confidence                                      000111122568899999999988874 457999999888 556666542 235


Q ss_pred             EEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          469 FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      ....|.|+|-...+++-  ..|.|++|.+..-
T Consensus       295 ~l~DV~whp~rp~i~si--~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  295 ELLDVNWHPVRPIIASI--ASGVVYIWAVVQV  324 (405)
T ss_pred             heeecccccceeeeeec--cCCceEEEEeecc
Confidence            67889999998877766  6789999987543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=204.99  Aligned_cols=319  Identities=19%  Similarity=0.307  Sum_probs=233.3

Q ss_pred             eEEEEECCC--CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          162 VTAVALSED--DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       162 V~~~~~s~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      |+++. ||.  -+.++.|+..|.+.||++.+++.+.++                   .++...|+++.-+|--..+|.|.
T Consensus       162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f-------------------~~~~s~IT~ieqsPaLDVVaiG~  221 (910)
T KOG1539|consen  162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTF-------------------QEFFSRITAIEQSPALDVVAIGL  221 (910)
T ss_pred             eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEe-------------------cccccceeEeccCCcceEEEEec
Confidence            77664 453  466899999999999999999999866                   56778999999999888999999


Q ss_pred             CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeEEee-cccCCeEEEEeeCCC-
Q 010296          240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYISTLF-GHQSEVLTIDCLRKE-  316 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-  316 (513)
                      .+|+|.+++++.++.+..|+...+.|++++|..||+. |++|+..|.+.+||+...+.+..+. .|.+.|....|.+.. 
T Consensus       222 ~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep  301 (910)
T KOG1539|consen  222 ENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP  301 (910)
T ss_pred             cCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence            9999999999999999999954699999999999976 5567777999999999988877665 788899999998876 


Q ss_pred             eEEEEeCCCcEEEEecCCCe----ee-EEecCCCCeeEEEee-cCCe-EEEEeCCCCEEEEecCCCCe------------
Q 010296          317 RVLTVGRDRSMQLWKVPEES----RL-VFRAPASSLECCCFI-SNDE-FLSGSDDGSIELWSLLRKKP------------  377 (513)
Q Consensus       317 ~~~~~~~d~~i~iwd~~~~~----~~-~~~~~~~~v~~~~~~-~~~~-~~~~~~dg~i~iwd~~~~~~------------  377 (513)
                      .+++++.|+.+++|-..++.    .+ ...+|..+..|+.|. .+++ +++++.|++++.+++.....            
T Consensus       302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~  381 (910)
T KOG1539|consen  302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR  381 (910)
T ss_pred             eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence            45588899999988665432    22 445788899999998 5565 66889999888887643110            


Q ss_pred             ----------------eEEeecCC-------------CcccCCC------------Ccc---------------------
Q 010296          378 ----------------VYIVKNAH-------------PLLDGLK------------NFE---------------------  395 (513)
Q Consensus       378 ----------------~~~~~~~~-------------~~~~~~~------------~~~---------------------  395 (513)
                                      +..+....             .......            .+.                     
T Consensus       382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN  461 (910)
T KOG1539|consen  382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN  461 (910)
T ss_pred             cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence                            00000000             0000000            000                     


Q ss_pred             -----cCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee---------
Q 010296          396 -----QDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL---------  461 (513)
Q Consensus       396 -----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~---------  461 (513)
                           ...+.|.......|...........|..+|+.++...-++.+++++.+|.+.+|++.... .+..+         
T Consensus       462 F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l~~~~~~i  540 (910)
T KOG1539|consen  462 FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLRLGSSITGI  540 (910)
T ss_pred             eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeeccCCCccee
Confidence                 001111111112222222222346788899999999999999999999999999998752 11000         


Q ss_pred             -----------------------------eec-CcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          462 -----------------------------YNL-PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       462 -----------------------------~~~-~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                                                   ..+ .|...|++++|||||++|+++ +.|++|++||+.++..
T Consensus       541 v~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa-smD~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  541 VYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA-SMDSTIRTWDLPTGTL  610 (910)
T ss_pred             eeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe-ecCCcEEEEeccCcce
Confidence                                         000 477899999999999999999 9999999999988754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.4e-25  Score=212.62  Aligned_cols=240  Identities=22%  Similarity=0.312  Sum_probs=176.2

Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC----------cCCCeEEEEEec---CCCe--EEEEeC
Q 010296          218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG----------HRGPVSCLTFRQ---GTSE--LFSGSF  282 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----------~~~~v~~~~~~~---~~~~--l~~~~~  282 (513)
                      .|.+.|+++.||+||+|||+|+.||.|+||.+...+....-.+          -.+.+..+..++   .++.  .-.+..
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            8999999999999999999999999999999865332111000          000111111111   0111  112222


Q ss_pred             CCcEEEEeCC----CCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC--
Q 010296          283 DRTVKIWNAE----DRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND--  356 (513)
Q Consensus       283 dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--  356 (513)
                      ... .+....    ..+++..+.+|.+.|..+.|+.++.||+++.|.+|++|++....++....|...|+|++|+|-.  
T Consensus       345 s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDr  423 (712)
T KOG0283|consen  345 SPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDR  423 (712)
T ss_pred             Ccc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCC
Confidence            222 222222    2356778899999999999999999999999999999999999999999999999999999965  


Q ss_pred             eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCE
Q 010296          357 EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDL  436 (513)
Q Consensus       357 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  436 (513)
                      +|++|+-||.|+||++...+.+.-....                                      .-|++++|+|+|++
T Consensus       424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--------------------------------------~lITAvcy~PdGk~  465 (712)
T KOG0283|consen  424 YFISGSLDGKVRLWSISDKKVVDWNDLR--------------------------------------DLITAVCYSPDGKG  465 (712)
T ss_pred             cEeecccccceEEeecCcCeeEeehhhh--------------------------------------hhheeEEeccCCce
Confidence            5999999999999999887766544322                                      12999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCCcceeeeeecCc------ccEEEEEEeecCCC-EEEEEecCCCcccccccC
Q 010296          437 AASGAGNGSVRLWAIESETKDIQPLYNLPL------VGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       437 l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~------~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~~  498 (513)
                      .++|+.+|..++|++... +.........+      ...|+.+.|.|... .++++ +.|.+|||+|..
T Consensus       466 avIGt~~G~C~fY~t~~l-k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~  532 (712)
T KOG0283|consen  466 AVIGTFNGYCRFYDTEGL-KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGR  532 (712)
T ss_pred             EEEEEeccEEEEEEccCC-eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEecc
Confidence            999999999999999876 22221111111      23799999998765 35555 689999999983

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=1.4e-24  Score=198.93  Aligned_cols=293  Identities=16%  Similarity=0.218  Sum_probs=209.0

Q ss_pred             cCCCeEE--EEECC---CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          158 HRQSVTA--VALSE---DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       158 h~~~V~~--~~~s~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      |.-++.-  ..|++   ....|+.+..+|.|.++|.......    ....         .......|...|..+.|-|..
T Consensus        46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr----~ee~---------~lk~~~aH~nAifDl~wapge  112 (720)
T KOG0321|consen   46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR----LEER---------QLKKPLAHKNAIFDLKWAPGE  112 (720)
T ss_pred             CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcc----hhhh---------hhcccccccceeEeeccCCCc
Confidence            4444443  66665   3457889999999999998654322    0000         011346899999999999976


Q ss_pred             CEEEEEeCCCcEEEEeCCCcceeee--ccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCce-------------
Q 010296          233 RYLASGGLDRHIHLWDTRIQEHIQA--FPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAY-------------  296 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-------------  296 (513)
                      ..|++++.|.++++||+.+.+++..  +.+|.+.|.+++|.|... .|++|+.||.|.|||++-...             
T Consensus       113 ~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~  192 (720)
T KOG0321|consen  113 SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR  192 (720)
T ss_pred             eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence            7899999999999999999998877  889999999999999665 577999999999999863220             


Q ss_pred             --------------eEEeecccCC----eEEEEeeCCCeEEEEeC-CCcEEEEecCCCeeeE---------EecC---CC
Q 010296          297 --------------ISTLFGHQSE----VLTIDCLRKERVLTVGR-DRSMQLWKVPEESRLV---------FRAP---AS  345 (513)
Q Consensus       297 --------------~~~~~~~~~~----v~~~~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~---------~~~~---~~  345 (513)
                                    +.....+...    |+.+.|-.+..|++++. |+.|+|||++......         +..+   ..
T Consensus       193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~  272 (720)
T KOG0321|consen  193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV  272 (720)
T ss_pred             ccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee
Confidence                          0111123333    44555655668887776 9999999998765432         1122   33


Q ss_pred             CeeEEEeecCC-eEEEEeCCCCEEEEecCCCC--eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296          346 SLECCCFISND-EFLSGSDDGSIELWSLLRKK--PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY  422 (513)
Q Consensus       346 ~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  422 (513)
                      .+.++.....| ++++.+.|+.|++|++.+..  ++..+....                                   ..
T Consensus       273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~-----------------------------------~~  317 (720)
T KOG0321|consen  273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL-----------------------------------NS  317 (720)
T ss_pred             eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc-----------------------------------cc
Confidence            56677776666 46777789999999997753  222222110                                   01


Q ss_pred             ceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCE-EEEEecCCCcccccccCCCc
Q 010296          423 SWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQF-LIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       423 ~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ..-..-..+|++.+|++|+.|...++|.+.+.......+..  |.-.|++|+|.|..-. ++++ ++|.++++|++..+.
T Consensus       318 sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G--ht~eVt~V~w~pS~~t~v~Tc-SdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  318 SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG--HTREVTTVRWLPSATTPVATC-SDDFRVKIWRLSNGL  394 (720)
T ss_pred             eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC--cceEEEEEeeccccCCCceee-ccCcceEEEeccCch
Confidence            11334457899999999999999999999988665555554  8888999999987544 4555 999999999986543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=3.2e-23  Score=192.30  Aligned_cols=269  Identities=9%  Similarity=0.059  Sum_probs=193.0

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCCCCeE-EEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKG-FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      |+......+..+..|. .+.+++|+|+++.+ ++++.++.|++||+.+++....+                   ..+ ..
T Consensus        16 ~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-------------------~~~-~~   74 (300)
T TIGR03866        16 IDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-------------------PSG-PD   74 (300)
T ss_pred             EECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-------------------cCC-CC
Confidence            3444444555665554 46789999999977 56778899999999987765433                   112 22


Q ss_pred             EEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC-cEEEEeCCCCceeEEe
Q 010296          223 ILALAVSSDGRYLASG-GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR-TVKIWNAEDRAYISTL  300 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~  300 (513)
                      +..++|+|+++.++++ +.++.|++||+.+.+.+..+.. ...+.+++|+|++.++++++.++ .+.+||..+++.+..+
T Consensus        75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~  153 (300)
T TIGR03866        75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV  153 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence            4678999999977654 5689999999998887777753 34568899999999999888765 5678899888776554


Q ss_pred             ecccCCeEEEEeeCCCeEE-EE-eCCCcEEEEecCCCeeeEE-ecC-------CCCeeEEEeecCCe--EEEEeCCCCEE
Q 010296          301 FGHQSEVLTIDCLRKERVL-TV-GRDRSMQLWKVPEESRLVF-RAP-------ASSLECCCFISNDE--FLSGSDDGSIE  368 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~~~~-~~-~~d~~i~iwd~~~~~~~~~-~~~-------~~~v~~~~~~~~~~--~~~~~~dg~i~  368 (513)
                      . ....+.++.|++++..+ ++ ..++.|++||+.+.+.... ..+       ......++|+|++.  +++.+.++.|.
T Consensus       154 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~  232 (300)
T TIGR03866       154 L-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA  232 (300)
T ss_pred             E-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence            3 33455788999988644 44 3589999999998765422 111       11234678999986  34455677899


Q ss_pred             EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe-cCCCcEE
Q 010296          369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG-AGNGSVR  447 (513)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g-~~dg~v~  447 (513)
                      +||+.+++.+..+...+                                      .+.+++|+|+|++|+++ +.+|.|+
T Consensus       233 v~d~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~g~~l~~~~~~~~~i~  274 (300)
T TIGR03866       233 VVDAKTYEVLDYLLVGQ--------------------------------------RVWQLAFTPDEKYLLTTNGVSNDVS  274 (300)
T ss_pred             EEECCCCcEEEEEEeCC--------------------------------------CcceEEECCCCCEEEEEcCCCCeEE
Confidence            99999888766553221                                      27899999999999886 4689999


Q ss_pred             EEEeCCCCcceeeeeecCcccEEEEEEeec
Q 010296          448 LWAIESETKDIQPLYNLPLVGFVNSLAFAK  477 (513)
Q Consensus       448 vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp  477 (513)
                      +||+.++ ..+..+.   .....+.++|+|
T Consensus       275 v~d~~~~-~~~~~~~---~~~~~~~~~~~~  300 (300)
T TIGR03866       275 VIDVAAL-KVIKSIK---VGRLPWGVVVRP  300 (300)
T ss_pred             EEECCCC-cEEEEEE---cccccceeEeCC
Confidence            9999987 3334443   345568888775

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.7e-24  Score=182.00  Aligned_cols=242  Identities=14%  Similarity=0.226  Sum_probs=190.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      ..|+.|++.|.+||+|+.+|.|.|||+.+...-+.+.+|..+|++++|+++|+.|++++.|..|.+||+..|.+++.+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            7899999999999999999999999999999989999999999999999999999999999999999999999998887 


Q ss_pred             ccCCeEEEEeeCC--CeEEEEeCCCcEEEEecCCCeeeEEecCC-----CCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296          303 HQSEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEESRLVFRAPA-----SSLECCCFISNDE-FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       303 ~~~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~  374 (513)
                      ...+|+...|+|.  +.++++-.+..-.+.++.......+....     ....+..|.+.|. +++|...|.+.+++..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            7899999999994  45666656665666666543332221111     1122335677775 77999999999999999


Q ss_pred             CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .+++..++....                                    ..|..+.|+..|++|++-+.|..||.|++..-
T Consensus       185 ~e~vas~rits~------------------------------------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di  228 (405)
T KOG1273|consen  185 LECVASFRITSV------------------------------------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDI  228 (405)
T ss_pred             heeeeeeeechh------------------------------------eeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence            998888764331                                    22889999999999999999999999998732


Q ss_pred             C-----cceeeeee---cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          455 T-----KDIQPLYN---LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       455 ~-----~~~~~~~~---~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      .     ..+.+...   .-....=.+++||.+|.|+++++...+.++||....+.
T Consensus       229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs  283 (405)
T KOG1273|consen  229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS  283 (405)
T ss_pred             cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc
Confidence            0     11111111   11233446789999999999998888999999876654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.3e-24  Score=177.33  Aligned_cols=264  Identities=16%  Similarity=0.240  Sum_probs=190.2

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC--CCC
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS--DGR  233 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~  233 (513)
                      .+|.+-|+|+.|.+.|+.+|||+.|++|+|||..........               ......|.+.|..+.|.+  -|+
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~---------------Ts~Wrah~~Si~rV~WAhPEfGq   74 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC---------------TSSWRAHDGSIWRVVWAHPEFGQ   74 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE---------------eeeEEecCCcEEEEEecCccccc
Confidence            479999999999999999999999999999997554432211               123468999999999976  589


Q ss_pred             EEEEEeCCCcEEEEeCCC---------cceeeeccCcCCCeEEEEEecC--CCeEEEEeCCCcEEEEeCCCCcee-----
Q 010296          234 YLASGGLDRHIHLWDTRI---------QEHIQAFPGHRGPVSCLTFRQG--TSELFSGSFDRTVKIWNAEDRAYI-----  297 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-----  297 (513)
                      .+|+++.|+++.||.-..         .....++......|+.++|.|.  |-.|++++.||.|+||+.-....+     
T Consensus        75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L  154 (361)
T KOG2445|consen   75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL  154 (361)
T ss_pred             eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence            999999999999997421         1234456667789999999984  556899999999999987543221     


Q ss_pred             -EEee-------cccCCeEEEEeeCC---CeEEEEeCCC------cEEEEecCCCeee-----EEecCCCCeeEEEeecC
Q 010296          298 -STLF-------GHQSEVLTIDCLRK---ERVLTVGRDR------SMQLWKVPEESRL-----VFRAPASSLECCCFISN  355 (513)
Q Consensus       298 -~~~~-------~~~~~v~~~~~~~~---~~~~~~~~d~------~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~  355 (513)
                       ..+.       .+..+..|+.|+|.   ..+++.+.+.      .++||........     .+..+..+|+.++|.|+
T Consensus       155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence             1121       35667889999974   3455555544      8899987655421     45688899999999997


Q ss_pred             C-----eEEEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCc-CCCCCcceEEEE
Q 010296          356 D-----EFLSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSY-HSSSAYSWVSSV  428 (513)
Q Consensus       356 ~-----~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~i~~~  428 (513)
                      -     .+++++.|| |+||.+.... ++..-....+                   ...+.+....+ ....|.+.|..+
T Consensus       235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~-------------------~~~~~l~v~~vs~~~~H~~~VWrv  294 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAP-------------------DLMTDLPVEKVSELDDHNGEVWRV  294 (361)
T ss_pred             cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCC-------------------CCccccceEEeeeccCCCCceEEE
Confidence            3     277999999 9999987532 1110000000                   00000111111 126788889999


Q ss_pred             EEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          429 TVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       429 ~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .|+-.|..|++.+.||.||+|..+-.
T Consensus       295 ~wNmtGtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  295 RWNMTGTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             EEeeeeeEEeecCCCceeeehhhhhh
Confidence            99999999999999999999987543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.4e-23  Score=192.29  Aligned_cols=336  Identities=15%  Similarity=0.213  Sum_probs=235.3

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI  223 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (513)
                      |++....+...+....++|.+++.+|.+..++.|+.||.+..++...+......                 .+....+.|
T Consensus        95 wDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r-----------------~l~rq~sRv  157 (691)
T KOG2048|consen   95 WDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR-----------------SLMRQKSRV  157 (691)
T ss_pred             EecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe-----------------ecccccceE
Confidence            667777777788888999999999999999999999998888888777655432                 233446889


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeec-------cC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF-------PG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      .+++|+|++..|++|+.||.|++||..++..+...       .. ...-|+++.|-.+ ..|++|..-|+|.+||...+.
T Consensus       158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gT  236 (691)
T KOG2048|consen  158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGT  236 (691)
T ss_pred             EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcc
Confidence            99999999999999999999999999988776522       11 2335788888755 469999999999999999999


Q ss_pred             eeEEeecccCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCee-----eEEecCCCCeeEEEeecCCeEEEEeCCCCEEE
Q 010296          296 YISTLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEESR-----LVFRAPASSLECCCFISNDEFLSGSDDGSIEL  369 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~i  369 (513)
                      .+..+..|...|.+++..++ +++++++.|+.|..|...+...     .....|...+.+++..++ .+++|+.|..+.+
T Consensus       237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  237 LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAI  315 (691)
T ss_pred             hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceeeEEEE
Confidence            99999999999999999997 5888999999999999877643     245678889999999887 7789999999888


Q ss_pred             EecCCCCeeEEe-ecCCCcccCCCCcccCcCccccccCCCCC------------CCCCCc--CCCCCcceEEEEEEecCC
Q 010296          370 WSLLRKKPVYIV-KNAHPLLDGLKNFEQDEGKISNGHSENGN------------LNPGSY--HSSSAYSWVSSVTVCGGS  434 (513)
Q Consensus       370 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~--~~~~~~~~i~~~~~s~~~  434 (513)
                      -.....+..... +..++. ............+..+......            .....+  ........|.+.++||+|
T Consensus       316 ~~s~~~~~~~h~~~~~~p~-~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg  394 (691)
T KOG2048|consen  316 CSSREFKNMDHRQKNLFPA-SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDG  394 (691)
T ss_pred             ccccccCchhhhccccccc-cceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCC
Confidence            665542211111 111110 0001111111111111111100            000000  012234458999999999


Q ss_pred             CEEEEecCCCcEEEEEeCCCC-------------------------------------------------cceeeeeecC
Q 010296          435 DLAASGAGNGSVRLWAIESET-------------------------------------------------KDIQPLYNLP  465 (513)
Q Consensus       435 ~~l~~g~~dg~v~vwd~~~~~-------------------------------------------------~~~~~~~~~~  465 (513)
                      ++|+.+.-. .++||.+....                                                 +.+..+...+
T Consensus       395 ~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~  473 (691)
T KOG2048|consen  395 NLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQA  473 (691)
T ss_pred             CEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcccccc
Confidence            999988733 34555443310                                                 0000000001


Q ss_pred             cccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          466 LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       466 ~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ....|+.+..||+|+|||+. +..|.|.+|++.+..
T Consensus       474 ~~~~I~~l~~SsdG~yiaa~-~t~g~I~v~nl~~~~  508 (691)
T KOG2048|consen  474 KCPSISRLVVSSDGNYIAAI-STRGQIFVYNLETLE  508 (691)
T ss_pred             CCCcceeEEEcCCCCEEEEE-eccceEEEEEcccce
Confidence            23578999999999999999 799999999987654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=7.4e-24  Score=195.94  Aligned_cols=352  Identities=16%  Similarity=0.225  Sum_probs=239.0

Q ss_pred             CcccchhhhhccCCCeEEEEECCCCC---eEEEEeCCceEEEEeCCCCcccccc--------CCChhhhccCCC----CC
Q 010296          147 EATDEFRVLLKHRQSVTAVALSEDDS---KGFSASKDGSILHWDVSSGKGVKYL--------WPSEEVLKSHGA----KD  211 (513)
Q Consensus       147 ~~~~~~~~~~~h~~~V~~~~~s~~~~---~l~t~~~dg~v~iwd~~~~~~~~~~--------~~~~~~~~~~~~----~~  211 (513)
                      ........+.||.+.|.+|+|...+.   +||++|.|..||||.+.-+......        ............    ..
T Consensus       179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is  258 (764)
T KOG1063|consen  179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS  258 (764)
T ss_pred             cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence            35566778999999999999987554   7889999999999998644422200        000000000000    11


Q ss_pred             CCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc--e-----eeeccCcCCCeEEEEEecCCCeEEEEeCCC
Q 010296          212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE--H-----IQAFPGHRGPVSCLTFRQGTSELFSGSFDR  284 (513)
Q Consensus       212 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  284 (513)
                      ....+.+|..-|+++.|+|.+..|++++.|.++.+|......  -     +..+.+.........|+|+++.+++-+..|
T Consensus       259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G  338 (764)
T KOG1063|consen  259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG  338 (764)
T ss_pred             hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence            112456999999999999999999999999999999865442  1     223334556789999999999999999999


Q ss_pred             cEEEEeCCCC---ceeEEeecccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeee-----EEecCCCCeeEEEeec-
Q 010296          285 TVKIWNAEDR---AYISTLFGHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL-----VFRAPASSLECCCFIS-  354 (513)
Q Consensus       285 ~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~-  354 (513)
                      ..++|.....   .....+.+|...|..++|.|.|. +++++.|.+-++|-.-..+..     .-..|...++|+++.+ 
T Consensus       339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence            9999983332   22345678999999999999875 559999999999876522211     2345778899999998 


Q ss_pred             CCeEEEEeCCCCEEEEecCCC--CeeEEeec-----C--CCcccCCCCcccCcCccccccCCCCC---------------
Q 010296          355 NDEFLSGSDDGSIELWSLLRK--KPVYIVKN-----A--HPLLDGLKNFEQDEGKISNGHSENGN---------------  410 (513)
Q Consensus       355 ~~~~~~~~~dg~i~iwd~~~~--~~~~~~~~-----~--~~~~~~~~~~~~~~~~i~~~~~~~~~---------------  410 (513)
                      +-+|++|.....+|+|+....  +.+..+..     .  .+....+..+..+...+.......|.               
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence            556999999999999987542  00000000     0  00000111111111111100000000               


Q ss_pred             ---------------CCCCCcCCCCCcceEEEEEEecCCCEEEEecCC-----CcEEEEEeCCCCcceeeeeecCcccEE
Q 010296          411 ---------------LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN-----GSVRLWAIESETKDIQPLYNLPLVGFV  470 (513)
Q Consensus       411 ---------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~v  470 (513)
                                     +.+..-...+|...|++++.+|+|+++|+++..     ..|+||+..+. ...+.+..  |.-.|
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~--HsLTV  575 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEG--HSLTV  575 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecc--cceEE
Confidence                           001111126788889999999999999999754     46999999887 23333433  88899


Q ss_pred             EEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          471 NSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       471 ~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      +.++|||||+||++. +.|.++.+|.......
T Consensus       576 T~l~FSpdg~~LLsv-sRDRt~sl~~~~~~~~  606 (764)
T KOG1063|consen  576 TRLAFSPDGRYLLSV-SRDRTVSLYEVQEDIK  606 (764)
T ss_pred             EEEEECCCCcEEEEe-ecCceEEeeeeecccc
Confidence            999999999999999 9999999998755443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=7.5e-24  Score=195.92  Aligned_cols=297  Identities=14%  Similarity=0.225  Sum_probs=228.2

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR  233 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  233 (513)
                      .+.||.+.|+++.|+|.+..|++++.|.++.+|...+...+..-   .  ++       .+...+.....+...|+|+++
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~---~--vR-------lGe~gg~a~GF~g~lw~~n~~  329 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD---V--VR-------LGEVGGSAGGFWGGLWSPNSN  329 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE---E--EE-------eecccccccceeeEEEcCCCC
Confidence            45699999999999999999999999999999998765433211   0  00       011224456689999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCc---ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc----eeEEeecccCC
Q 010296          234 YLASGGLDRHIHLWDTRIQ---EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA----YISTLFGHQSE  306 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~  306 (513)
                      .+++-+..|..++|.....   .....+.+|...|..+.|+|.|.+|++.+.|.+-+++-.-..+    .+....-|...
T Consensus       330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD  409 (764)
T KOG1063|consen  330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD  409 (764)
T ss_pred             EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccc
Confidence            9999999999999983322   2344567899999999999999999999999999998764222    23334558888


Q ss_pred             eEEEEeeC-CCeEEEEeCCCcEEEEecCCC-------------------------------------------ee----e
Q 010296          307 VLTIDCLR-KERVLTVGRDRSMQLWKVPEE-------------------------------------------SR----L  338 (513)
Q Consensus       307 v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~-------------------------------------------~~----~  338 (513)
                      ++|+++-+ +-+|+++.....+++|+....                                           ..    .
T Consensus       410 l~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~  489 (764)
T KOG1063|consen  410 LTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA  489 (764)
T ss_pred             ceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee
Confidence            99999988 678889999999999975310                                           00    0


Q ss_pred             ------------------------------EEecCCCCeeEEEeecCCeEE-EEeCC-----CCEEEEecCCCCeeEEee
Q 010296          339 ------------------------------VFRAPASSLECCCFISNDEFL-SGSDD-----GSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       339 ------------------------------~~~~~~~~v~~~~~~~~~~~~-~~~~d-----g~i~iwd~~~~~~~~~~~  382 (513)
                                                    .+.+|...|.+++.+|++.|+ +++..     ..|++|+..+....+.+ 
T Consensus       490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-  568 (764)
T KOG1063|consen  490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-  568 (764)
T ss_pred             ecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee-
Confidence                                          022467789999999999754 55543     45899999888777766 


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee-
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL-  461 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~-  461 (513)
                                                          ..|.-.|+.|+|||+|++|++.+.|.++.+|........-..+ 
T Consensus       569 ------------------------------------~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa  612 (764)
T KOG1063|consen  569 ------------------------------------EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFA  612 (764)
T ss_pred             ------------------------------------cccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhc
Confidence                                                3444559999999999999999999999999986542211111 


Q ss_pred             eecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          462 YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      ..-.|..-|.++.|+|++.+++++ +.|.+|.+|.....
T Consensus       613 ~~k~HtRIIWdcsW~pde~~FaTa-SRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  613 CLKAHTRIIWDCSWSPDEKYFATA-SRDKKVKVWEEPDL  650 (764)
T ss_pred             cccccceEEEEcccCcccceeEEe-cCCceEEEEeccCc
Confidence            123488899999999999999999 99999999987655

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-23  Score=183.26  Aligned_cols=241  Identities=23%  Similarity=0.368  Sum_probs=187.2

Q ss_pred             EEEEEEcC-------CCCEEEEEeCCCcEEEEeCCCcce---ee------------------eccCcCCCeEEEEEecCC
Q 010296          223 ILALAVSS-------DGRYLASGGLDRHIHLWDTRIQEH---IQ------------------AFPGHRGPVSCLTFRQGT  274 (513)
Q Consensus       223 v~~~~~s~-------~~~~l~s~~~dg~i~vwd~~~~~~---~~------------------~~~~~~~~v~~~~~~~~~  274 (513)
                      ..|++|..       .|+++|.|+.+..|.|||+.-...   ..                  .-.+|+..|.+|+|+..-
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            45666643       368999999999999999752211   11                  123588889999998754


Q ss_pred             -CeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEE
Q 010296          275 -SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECC  350 (513)
Q Consensus       275 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~  350 (513)
                       +.|++||.|.+|++||+.++++...+..|...|.++.|+|..  .+++|+.|++|.+.|.+..... ....-.+.|..+
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence             468899999999999999999999999999999999999953  6779999999999999853322 334455678899


Q ss_pred             EeecCCe--EEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEE
Q 010296          351 CFISNDE--FLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSS  427 (513)
Q Consensus       351 ~~~~~~~--~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~  427 (513)
                      +|.|...  |+++..||+|+-+|++.. +++.+++                                     .|...|.+
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-------------------------------------AHd~~ISg  378 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-------------------------------------AHDDEISG  378 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCCCceeEEE-------------------------------------eccCCcce
Confidence            9998764  889999999999999986 8888875                                     44445999


Q ss_pred             EEEecCC-CEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          428 VTVCGGS-DLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       428 ~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      |++++.- .+|+|++.|+.|++|++............+ ..+...|.++.|+-.++++.+|..+.+++||+....
T Consensus       379 l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~-~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  379 LSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF-KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             EEecCCCCcceeeccccceEEEEeecCCCCcccccccc-cccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence            9998754 578999999999999997652222211111 245578889999988777666888899999987764

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=7.5e-26  Score=209.97  Aligned_cols=253  Identities=23%  Similarity=0.414  Sum_probs=212.4

Q ss_pred             CCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010296          169 EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWD  248 (513)
Q Consensus       169 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd  248 (513)
                      |.+.+++.....-.+++|+...                         +..|...|.++..-..++.+++|+.+..+-+|.
T Consensus         2 ~~~~~~m~~~~~t~Lr~~~~~~-------------------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~   56 (825)
T KOG0267|consen    2 PGMEFLMKTKRATKLRVWDTRE-------------------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWA   56 (825)
T ss_pred             Ccccccceeeeeeccccccchh-------------------------hhhhhhhhceeeeeccceeeccCCCceeecccc
Confidence            3444555666666778888663                         346777888888877889999999999999999


Q ss_pred             CCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcE
Q 010296          249 TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSM  327 (513)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i  327 (513)
                      +..-..+..|.+|..+|.++.|++...+|++|+.+|+|++||+...+.++++.+|...+.++.|+|-+.+. .++.|..+
T Consensus        57 i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~  136 (825)
T KOG0267|consen   57 IGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDL  136 (825)
T ss_pred             ccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccc
Confidence            88777788899999999999999999999999999999999999999999999999999999999988555 78889999


Q ss_pred             EEEecCCCee-eEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296          328 QLWKVPEESR-LVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH  405 (513)
Q Consensus       328 ~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  405 (513)
                      ++||++...+ ..+.+|...+.++.|+|+|. ++.|+.|.+++|||+..|+.+..|..                      
T Consensus       137 ~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~----------------------  194 (825)
T KOG0267|consen  137 KIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS----------------------  194 (825)
T ss_pred             eehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc----------------------
Confidence            9999995544 47777888899999999996 66888899999999999998888753                      


Q ss_pred             CCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE
Q 010296          406 SENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~  485 (513)
                                     |...+..+.|+|..-++++|+.|++|++||+.+. ..+....  +....|.+++|+|++..+++|
T Consensus       195 ---------------~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~--~~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  195 ---------------HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGK--PETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             ---------------ccccccccccCchhhhhccCCCCceeeeecccee-EEeeccC--CccCCceeeeecCCceeeecC
Confidence                           3344888999999999999999999999999865 2222222  236779999999999988887


Q ss_pred             e
Q 010296          486 V  486 (513)
Q Consensus       486 ~  486 (513)
                      .
T Consensus       257 ~  257 (825)
T KOG0267|consen  257 E  257 (825)
T ss_pred             c
Confidence            3

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=9.3e-26  Score=209.35  Aligned_cols=236  Identities=19%  Similarity=0.326  Sum_probs=208.7

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      +.+..|...|.|+..-..++.+++|+.|..+.+|.+.....+.                   .+.+|..+|.+|.|++..
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E   82 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSE   82 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcch
Confidence            4566899999999997788999999999999999987655443                   347999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEe
Q 010296          233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDC  312 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  312 (513)
                      .+|++|+.+|+|++||+...+.++++.+|...+.++.|+|-+.+.+.|+.|+.+++||++...|...+.+|...+..+.|
T Consensus        83 ~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~l  162 (825)
T KOG0267|consen   83 RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRL  162 (825)
T ss_pred             hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             eCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCccc
Q 010296          313 LRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLD  389 (513)
Q Consensus       313 ~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  389 (513)
                      +|+|+++ .++.|..++|||+..++.. .|..|...+..+.|+|... ++.|+.|++|++||+.+...+......     
T Consensus       163 sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-----  237 (825)
T KOG0267|consen  163 SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-----  237 (825)
T ss_pred             cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-----
Confidence            9999766 7778899999999988877 5677899999999999886 569999999999999887766655432     


Q ss_pred             CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC
Q 010296          390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG  444 (513)
Q Consensus       390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg  444 (513)
                                                      ...|.+++|+|++..+++|....
T Consensus       238 --------------------------------~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  238 --------------------------------TDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             --------------------------------cCCceeeeecCCceeeecCchhh
Confidence                                            22399999999999999987653

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6e-25  Score=205.60  Aligned_cols=242  Identities=18%  Similarity=0.253  Sum_probs=192.7

Q ss_pred             eEEEEECC-CCCeEEEEeCCceEEEEeCCCC---ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CCEEE
Q 010296          162 VTAVALSE-DDSKGFSASKDGSILHWDVSSG---KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GRYLA  236 (513)
Q Consensus       162 V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~  236 (513)
                      +..|.|+. +.++|||++..|.|.+||+...   +.+.                   .+..|...++++.|++. ..+|+
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------------------~f~EH~Rs~~~ldfh~tep~ili  150 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------------------VFNEHERSANKLDFHSTEPNILI  150 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhh-------------------HhhhhccceeeeeeccCCccEEE
Confidence            44566664 4689999999999999999862   2222                   34789999999999984 56899


Q ss_pred             EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeCCCC-ceeEEeecccCCeEEEEeeC
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNAEDR-AYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~  314 (513)
                      +|+.||+|++||++..+...++.+....|..++|+|. +..++++...|.+++||++.. ++...+..|.++|.|+.|+|
T Consensus       151 SGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP  230 (839)
T KOG0269|consen  151 SGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP  230 (839)
T ss_pred             ecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC
Confidence            9999999999999999999999999999999999995 567889999999999999874 56778889999999999999


Q ss_pred             CCe-EEEEeCCCcEEEEecCCCee--eEEecCCCCeeEEEeecCCe--EEEEe--CCCCEEEEecCCCCeeEEeecCCCc
Q 010296          315 KER-VLTVGRDRSMQLWKVPEESR--LVFRAPASSLECCCFISNDE--FLSGS--DDGSIELWSLLRKKPVYIVKNAHPL  387 (513)
Q Consensus       315 ~~~-~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~--~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~  387 (513)
                      ++. |++||.|+.|+||++.+...  ........++.++.|-|...  |++++  .|-.|+|||++..-..+.....|  
T Consensus       231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--  308 (839)
T KOG0269|consen  231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--  308 (839)
T ss_pred             CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--
Confidence            764 55999999999999986543  34455667899999999874  66554  57889999998765443333222  


Q ss_pred             ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEeCCCCcce
Q 010296          388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAIESETKDI  458 (513)
Q Consensus       388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~~~~~~~~  458 (513)
                                                        ...++.++|-. +...|.+++.||+|..-.+++...++
T Consensus       309 ----------------------------------~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~pi  346 (839)
T KOG0269|consen  309 ----------------------------------TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTPI  346 (839)
T ss_pred             ----------------------------------CccccceeccCCCceeeEeecCccHHHHhhhhcccChh
Confidence                                              23388888865 45688899999998887777664433

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=5.6e-24  Score=189.28  Aligned_cols=260  Identities=16%  Similarity=0.222  Sum_probs=208.3

Q ss_pred             eEEEEECCCCCeEEE--EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          162 VTAVALSEDDSKGFS--ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       162 V~~~~~s~~~~~l~t--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      |+++.|+.... |++  .+.|..+++|.-......  +              |. .-......-.|++......|+++|+
T Consensus        37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~--V--------------p~-~~k~~gd~~~Cv~~~s~S~y~~sgG   98 (673)
T KOG4378|consen   37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPE--V--------------PR-VRKLTGDNAFCVACASQSLYEISGG   98 (673)
T ss_pred             ceeeeccccce-EEEeecCCceeEEEecccCCCCc--c--------------ce-eeccccchHHHHhhhhcceeeeccC
Confidence            89999987654 444  456888999975543110  0              00 0001112344555555568999999


Q ss_pred             CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC-eEEEEeeCCCe-
Q 010296          240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE-VLTIDCLRKER-  317 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~-  317 (513)
                      ..+.|+|||++...+.+.+++|...|+++.++....||++++..|-|.|..+.++.....|....+. |.-+.|++..+ 
T Consensus        99 ~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~  178 (673)
T KOG4378|consen   99 QSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF  178 (673)
T ss_pred             cCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce
Confidence            9999999999988888899999999999999999999999999999999999999888777655444 55888998664 


Q ss_pred             -EEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296          318 -VLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK  392 (513)
Q Consensus       318 -~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  392 (513)
                       |.+++.+|.|.+||+.....+  ....|..+...++|+|.+.  |++.+.|..|.+||....+....+...++      
T Consensus       179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P------  252 (673)
T KOG4378|consen  179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP------  252 (673)
T ss_pred             eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC------
Confidence             348889999999999887766  4567888999999999874  77999999999999998877777765555      


Q ss_pred             CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEE
Q 010296          393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNS  472 (513)
Q Consensus       393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~  472 (513)
                                                      .+.++|+++|.+|++|+..|.|..||++....++..+..  |...|++
T Consensus       253 --------------------------------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa--h~~sVt~  298 (673)
T KOG4378|consen  253 --------------------------------LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA--HDASVTR  298 (673)
T ss_pred             --------------------------------cceeeecCCceEEEeecCCceEEEEecccCCCCceEeee--cccceeE
Confidence                                            889999999999999999999999999998777777765  7788999


Q ss_pred             EEeecCC
Q 010296          473 LAFAKSG  479 (513)
Q Consensus       473 v~~sp~~  479 (513)
                      |+|-|.-
T Consensus       299 vafq~s~  305 (673)
T KOG4378|consen  299 VAFQPSP  305 (673)
T ss_pred             EEeeecc
Confidence            9998864

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1.9e-23  Score=193.75  Aligned_cols=290  Identities=18%  Similarity=0.232  Sum_probs=220.9

Q ss_pred             eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC----------
Q 010296          162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD----------  231 (513)
Q Consensus       162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----------  231 (513)
                      ..++.|+|....|.+.-.|..++|||+..-..+...                ....-|...|+.+.--|-          
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~----------------~s~lyHS~ciW~Ve~~p~nv~~~~~acl  390 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC----------------SSMLYHSACIWDVENLPCNVHSPTAACL  390 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccce----------------eeeeeccceeeeeccccccccCcccccC
Confidence            356789999999999999999999999875543211                123356666776665441          


Q ss_pred             -CCEEEEEeCCCcEEEEeCCCcceeeec-------------------------------------cCcCCCeEEEEEecC
Q 010296          232 -GRYLASGGLDRHIHLWDTRIQEHIQAF-------------------------------------PGHRGPVSCLTFRQG  273 (513)
Q Consensus       232 -~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------------------~~~~~~v~~~~~~~~  273 (513)
                       ...|++|+.|++|++|++..+..-..+                                     -.....+.+++.+|+
T Consensus       391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~  470 (1080)
T KOG1408|consen  391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD  470 (1080)
T ss_pred             CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence             135899999999999998752110000                                     012347899999999


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC---C-eEEEEeCCCcEEEEecCCCeee--EEecCCCCe
Q 010296          274 TSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK---E-RVLTVGRDRSMQLWKVPEESRL--VFRAPASSL  347 (513)
Q Consensus       274 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v  347 (513)
                      +++|++|..-|+|+||++..-+....+..|...|.|+.|+..   . .|++++.|..|++||+..+-.+  .+..|...|
T Consensus       471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI  550 (1080)
T KOG1408|consen  471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI  550 (1080)
T ss_pred             cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence            999999999999999999998888889999999999999863   2 4558999999999999776544  677889999


Q ss_pred             eEEEeecCC---eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296          348 ECCCFISND---EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW  424 (513)
Q Consensus       348 ~~~~~~~~~---~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  424 (513)
                      +++.|.-+|   ++++++.|..|.+--.........+..++.                                ......
T Consensus       551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~--------------------------------t~~ktT  598 (1080)
T KOG1408|consen  551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQ--------------------------------TLSKTT  598 (1080)
T ss_pred             eEEEEeecCCceEEEeccCchhhheehhccccCceecccccc--------------------------------ccccce
Confidence            999998877   388999998876543332222222222211                                223345


Q ss_pred             EEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec-CcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          425 VSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL-PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       425 i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      +..++..|..+++++++.|..|+||++.++ +..+.+... .|.+....|...|.|-||+++ ..|.+|.++|...++
T Consensus       599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atS-csdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGIYLATS-CSDKTLCFVDFVSGE  674 (1080)
T ss_pred             EEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCCccEEEEe-ecCCceEEEEeccch
Confidence            999999999999999999999999999998 445555443 356888889999999999999 678899999987664

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=8.2e-23  Score=171.41  Aligned_cols=247  Identities=17%  Similarity=0.304  Sum_probs=185.3

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc----ceeeeccCcCCCeEEEEEec--CCCeEEEEeCCCcEEEE
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ----EHIQAFPGHRGPVSCLTFRQ--GTSELFSGSFDRTVKIW  289 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw  289 (513)
                      ..+|..-|+++.|.+.|+.+|+|+.|++|+|||....    .+....+.|.+.|..+.|.+  -|+.+++++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            4578899999999999999999999999999996533    45667888999999999965  47889999999999999


Q ss_pred             eCCC---------CceeEEeecccCCeEEEEeeCC--C-eEEEEeCCCcEEEEecCCCeeeE--------------EecC
Q 010296          290 NAED---------RAYISTLFGHQSEVLTIDCLRK--E-RVLTVGRDRSMQLWKVPEESRLV--------------FRAP  343 (513)
Q Consensus       290 d~~~---------~~~~~~~~~~~~~v~~~~~~~~--~-~~~~~~~d~~i~iwd~~~~~~~~--------------~~~~  343 (513)
                      .-..         -....++......|+.+.|.|.  | .+++++.||.++||+......+.              ...+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            7521         1124456677889999999994  4 67799999999999876543221              1124


Q ss_pred             CCCeeEEEeecCCe----EEEEeCC-----CCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCC
Q 010296          344 ASSLECCCFISNDE----FLSGSDD-----GSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNP  413 (513)
Q Consensus       344 ~~~v~~~~~~~~~~----~~~~~~d-----g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  413 (513)
                      ..+..|+.|+|...    |++|+.+     +.+.||...... ....+..                              
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~------------------------------  218 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE------------------------------  218 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh------------------------------
Confidence            56778899987642    5566654     478888765543 1111110                              


Q ss_pred             CCcCCCCCcceEEEEEEecCC----CEEEEecCCCcEEEEEeCCC----------------Ccceeeeeec-CcccEEEE
Q 010296          414 GSYHSSSAYSWVSSVTVCGGS----DLAASGAGNGSVRLWAIESE----------------TKDIQPLYNL-PLVGFVNS  472 (513)
Q Consensus       414 ~~~~~~~~~~~i~~~~~s~~~----~~l~~g~~dg~v~vwd~~~~----------------~~~~~~~~~~-~~~~~v~~  472 (513)
                        +  ..+..+|+.|+|.|+-    .+||+++.|| |+||++...                .-.+..+..+ .|.+.|..
T Consensus       219 --L--~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr  293 (361)
T KOG2445|consen  219 --L--PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR  293 (361)
T ss_pred             --c--CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE
Confidence              0  4556679999999953    5899999999 999999841                0122223322 38899999


Q ss_pred             EEeecCCCEEEEEecCCCcccccccC
Q 010296          473 LAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       473 v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      +.|+-.|..|+++ |+||+||+|...
T Consensus       294 v~wNmtGtiLsSt-GdDG~VRLWkan  318 (361)
T KOG2445|consen  294 VRWNMTGTILSST-GDDGCVRLWKAN  318 (361)
T ss_pred             EEEeeeeeEEeec-CCCceeeehhhh
Confidence            9999999999888 999999999644

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.5e-23  Score=198.60  Aligned_cols=250  Identities=12%  Similarity=0.175  Sum_probs=202.5

Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc-ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296          217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ-EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      ..|....+.|+|.|+|.+|++++.||.|++|+..+. ....++..+...|.+++..  +.+|++|+.+++|.+|.+..+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            478888999999999999999999999999997766 3334444477777777764  4589999999999999999988


Q ss_pred             eeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCee-eEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296          296 YISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESR-LVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL  372 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~  372 (513)
                      .-..+....-++++++++.+|.++ .|+.|-.|++.++..... ..+++|..+|.++.++|++. |++.+.||.|+||++
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~  167 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL  167 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence            766666678889999999988655 777888999999977655 47899999999999999997 668889999999999


Q ss_pred             CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                      .++....++....+...                             ......++.++|+|+|..|+..+.|+.|++|+..
T Consensus       168 ~~~~~~~tl~~v~k~n~-----------------------------~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~  218 (933)
T KOG1274|consen  168 QDGILSKTLTGVDKDNE-----------------------------FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK  218 (933)
T ss_pred             ccchhhhhcccCCcccc-----------------------------ccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence            99988877764332210                             0112338899999998888888889999999999


Q ss_pred             CCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          453 SETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      ........... .+...+.+++|+|+|+|||++ +.+|.|.|||+.+
T Consensus       219 ~we~~f~Lr~~-~~ss~~~~~~wsPnG~YiAAs-~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  219 GWELQFKLRDK-LSSSKFSDLQWSPNGKYIAAS-TLDGQILVWNVDT  263 (933)
T ss_pred             Cceeheeeccc-ccccceEEEEEcCCCcEEeee-ccCCcEEEEeccc
Confidence            88444333333 234459999999999999999 9999999999984

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=2.5e-23  Score=179.09  Aligned_cols=216  Identities=21%  Similarity=0.322  Sum_probs=170.5

Q ss_pred             hccCCCeEEEEECCCC--CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-C
Q 010296          156 LKHRQSVTAVALSEDD--SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-G  232 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~  232 (513)
                      .+|.+.|+.+..++-+  .+.++-+..|.|.||++...-  ..+ .............|...+.+|...=+.|+|||- .
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l-~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~  224 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NAL-SEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT  224 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhh-cCccccccccccCceEEecccCccceeeecccccc
Confidence            3688888888888754  456677889999999986422  111 111122222445677788899999999999993 3


Q ss_pred             CEEEEEeCCCcEEEEeCCCccee---eeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCC---ceeEEeecccC
Q 010296          233 RYLASGGLDRHIHLWDTRIQEHI---QAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDR---AYISTLFGHQS  305 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~  305 (513)
                      ..|++|..-+.|++|...++.-.   ..|.+|+..|..++|+|.. ..|++|+.||+|+|||++.+   .++.+ +.|.+
T Consensus       225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~s  303 (440)
T KOG0302|consen  225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNS  303 (440)
T ss_pred             cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCC
Confidence            35888988899999999887643   4567799999999999965 46889999999999999987   33443 78999


Q ss_pred             CeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeee----EEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCC
Q 010296          306 EVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL----VFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       306 ~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~  375 (513)
                      .|+.|.|+.... |++|+.+|+++|||++.-+.-    .+..|..+|+++.|+|..  .|++++.|.+|.|||+..-
T Consensus       304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            999999998765 668999999999999875543    788999999999999975  4889999999999998754

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=1.4e-22  Score=168.95  Aligned_cols=225  Identities=20%  Similarity=0.320  Sum_probs=179.3

Q ss_pred             CCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCcc------------ee---eeccCcCCCeEEEEEecC-CCeE
Q 010296          215 RATKQSKHILALAVSS-DGRYLASGGLDRHIHLWDTRIQE------------HI---QAFPGHRGPVSCLTFRQG-TSEL  277 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~------------~~---~~~~~~~~~v~~~~~~~~-~~~l  277 (513)
                      ....|.+.|.++...+ .|+++++|+.||.|.|||++...            ++   ..-.+|...|..+.|-|- ...+
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            3467889999999988 68999999999999999987543            10   112358889999999984 4567


Q ss_pred             EEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC---CeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEe
Q 010296          278 FSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK---ERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCF  352 (513)
Q Consensus       278 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~  352 (513)
                      .+++.|.+++|||..+.+....|+ ..+.|++-+++|-   ..|+ ++..+-.|++.|+..+... .+.+|...|.++.|
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW  196 (397)
T ss_pred             ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence            788899999999999998888776 7788999999883   3444 6667889999999998876 78899999999999


Q ss_pred             ecCCe--EEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEE
Q 010296          353 ISNDE--FLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVT  429 (513)
Q Consensus       353 ~~~~~--~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~  429 (513)
                      +|...  |++|+.||.|++||++.. .+...+..+....                       .+..-....|.+.|..++
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~-----------------------~p~~~~n~ah~gkvngla  253 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR-----------------------PPILKTNTAHYGKVNGLA  253 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc-----------------------Cccccccccccceeeeee
Confidence            99885  679999999999999876 5666665443211                       111112367888899999


Q ss_pred             EecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          430 VCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       430 ~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                      |+.++.++++.+.|..+++|+..++...+..+..
T Consensus       254 ~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~  287 (397)
T KOG4283|consen  254 WTSDARYLASCGTDDRIRVWNMESGRNTLREFGP  287 (397)
T ss_pred             ecccchhhhhccCccceEEeecccCccccccccc
Confidence            9999999999999999999999988655554433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.1e-22  Score=177.84  Aligned_cols=239  Identities=15%  Similarity=0.235  Sum_probs=190.0

Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--cceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCc
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRI--QEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  295 (513)
                      ..+.|++|.|+|....|++++.|++++||.+..  ...++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            356799999999999999999999999998753  345666666778999999999999 89999999999999998876


Q ss_pred             eeE--Eeeccc-CCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEE
Q 010296          296 YIS--TLFGHQ-SEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELW  370 (513)
Q Consensus       296 ~~~--~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iw  370 (513)
                      ...  .+.++. ..+..+..++++.++ ..|..|.|.+....++..+......+.+..++|+.+++ +++++.+|.|.+|
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            532  233333 345677778877554 88999999999999998887777788899999999986 7788899999999


Q ss_pred             ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      |++...+++.+......                                    .-+++|.|+++.|||+|+..|.|.|||
T Consensus       372 nl~~~~~~~rf~D~G~v------------------------------------~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSV------------------------------------HGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             ecCCcceEEEEeecCcc------------------------------------ceeeeeecCCCceEEeccCcceEEEec
Confidence            99999999888643321                                    167889999999999999999999999


Q ss_pred             eCCC-----CcceeeeeecCcccEEEEEEeecCCCEEEEEec-CCCccccc
Q 010296          451 IESE-----TKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVG-QEPRLGRW  495 (513)
Q Consensus       451 ~~~~-----~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-~dg~v~~W  495 (513)
                      .++.     .+++..+..  ....|++++|+||++.||.++. ....+++=
T Consensus       416 ~~s~~~s~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLV  464 (514)
T KOG2055|consen  416 GNSCFASTNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLV  464 (514)
T ss_pred             cchhhccCCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEE
Confidence            7653     123333322  4678999999999999987732 23445543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.91  E-value=2.1e-22  Score=175.15  Aligned_cols=290  Identities=17%  Similarity=0.225  Sum_probs=202.5

Q ss_pred             CCCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          159 RQSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       159 ~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      ..+|..+.|.++.. .|+||+.|..|+||-+..+..-..-          ........+..|...|+++.|+|+|.+||+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS   82 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGELLAS   82 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcCeeee
Confidence            57899999999877 9999999999999998765432200          001123356889999999999999999999


Q ss_pred             EeCCCcEEEEeCC--------C--------cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296          238 GGLDRHIHLWDTR--------I--------QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       238 ~~~dg~i~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      |+.+|.|.+|...        +        ......+.+|...|..++|+|++.++++++.|..+++||+..|+....+.
T Consensus        83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~  162 (434)
T KOG1009|consen   83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD  162 (434)
T ss_pred             cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc
Confidence            9999999999765        2        22345677899999999999999999999999999999999999999999


Q ss_pred             cccCCeEEEEeeCCCeE-EEEeCCCcEEEEecCCCeeeEEec--------------------C----CCCeeEEEeecCC
Q 010296          302 GHQSEVLTIDCLRKERV-LTVGRDRSMQLWKVPEESRLVFRA--------------------P----ASSLECCCFISND  356 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~--------------------~----~~~v~~~~~~~~~  356 (513)
                      .|...+..++|.|-+++ ++-+.|...+.+.+...+......                    |    ..-...++|+|+|
T Consensus       163 dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG  242 (434)
T KOG1009|consen  163 DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG  242 (434)
T ss_pred             ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence            99999999999997654 477777777777665443321110                    1    1223456778888


Q ss_pred             eEE-EEe----CCCCE-----EEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296          357 EFL-SGS----DDGSI-----ELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV  425 (513)
Q Consensus       357 ~~~-~~~----~dg~i-----~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  425 (513)
                      .++ +.+    ..+.+     ++|+-... +|...+...                                     ..+.
T Consensus       243 ~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~-------------------------------------~k~~  285 (434)
T KOG1009|consen  243 SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP-------------------------------------KKPA  285 (434)
T ss_pred             cEEEcccceeeeCCceeeceeEeeccccccCceeecCCC-------------------------------------Ccce
Confidence            643 221    12222     23332211 111111110                                     0111


Q ss_pred             EEEEE------------------ecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEec
Q 010296          426 SSVTV------------------CGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVG  487 (513)
Q Consensus       426 ~~~~~------------------s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~  487 (513)
                      ..+.|                  -|.+-.+|.++.+ .|+|||..+. .++..+..+ |-..|+.++|++||.+|+.+ +
T Consensus       286 lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~-~P~~~v~ni-hy~~iTDiaws~dg~~l~vS-S  361 (434)
T KOG1009|consen  286 LAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTL-EPLAVVDNI-HYSAITDIAWSDDGSVLLVS-S  361 (434)
T ss_pred             EEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccc-cceEEEeee-eeeeecceeecCCCcEEEEe-c
Confidence            12222                  2344456666665 7999999886 445444443 78899999999999999999 8


Q ss_pred             CCCcccccccCC
Q 010296          488 QEPRLGRWGHLP  499 (513)
Q Consensus       488 ~dg~v~~W~~~~  499 (513)
                      .||-..+-...+
T Consensus       362 ~DGyCS~vtfe~  373 (434)
T KOG1009|consen  362 TDGFCSLVTFEP  373 (434)
T ss_pred             cCCceEEEEEcc
Confidence            998665554443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.7e-22  Score=172.76  Aligned_cols=299  Identities=16%  Similarity=0.235  Sum_probs=217.1

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCC-CCCCCcccEEEEEEcC
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQG-RATKQSKHILALAVSS  230 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~  230 (513)
                      ..-+.+|.+.|++|.|+.++++|++|+.|..++||++......++             ..|.. .-..|...|.|++|..
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-------------~KPI~~~~~~H~SNIF~L~F~~  115 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-------------PKPIGVMEHPHRSNIFSLEFDL  115 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-------------CCCceeccCccccceEEEEEcc
Confidence            345779999999999999999999999999999999864322111             11111 2245678999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccC--cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc-e--eEEeecccC
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPG--HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA-Y--ISTLFGHQS  305 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~--~~~~~~~~~  305 (513)
                      .+++|++|..+++|.+.|+.+.+.+..+..  ..+.|..+..+|-.+.|++.+.++.|.+||.+..+ .  +..+.....
T Consensus       116 ~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~  195 (609)
T KOG4227|consen  116 ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK  195 (609)
T ss_pred             CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence            999999999999999999999998887762  23489999999999999999999999999998765 2  222333455


Q ss_pred             CeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeE-----EecC---CCCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296          306 EVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLV-----FRAP---ASSLECCCFISNDE-FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       306 ~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~-----~~~~---~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~  374 (513)
                      ...++.|+|-.  .+++.+..+.+.+||++......     +.+.   ...-..+.|+|+|. |++.-....-.+||+.+
T Consensus       196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S  275 (609)
T KOG4227|consen  196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS  275 (609)
T ss_pred             cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence            67888999954  45588889999999998765432     1222   22336778999885 66666666667788766


Q ss_pred             CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      ..+. .++..|.                    ++|..         ....+.+++|..+. .+++|+.+-.|++|.+...
T Consensus       276 ~R~~-V~k~D~N--------------------~~GY~---------N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  276 QRCF-VLKSDHN--------------------PNGYC---------NIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             ccce-eEeccCC--------------------CCcce---------eeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence            4432 2222221                    11111         12237788888765 4999999999999999643


Q ss_pred             Cc----------------------ceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          455 TK----------------------DIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       455 ~~----------------------~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      ..                      .+..+.  .|.+.++.|.|+|...+|+++ |-...++||.-
T Consensus       325 ~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr--GHRSv~NQVRF~~H~~~l~SS-GVE~~~KlWS~  386 (609)
T KOG4227|consen  325 NDSYGFTQIGHDEEEMPSEIFIEKELTVLR--GHRSVPNQVRFSQHNNLLVSS-GVENSFKLWSD  386 (609)
T ss_pred             ccccCccccCcchhhCchhheecceeEEEe--cccccccceeecCCcceEecc-chhhheecccc
Confidence            11                      111222  367788999999987777766 99999999964

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=8.2e-23  Score=179.68  Aligned_cols=258  Identities=17%  Similarity=0.241  Sum_probs=190.1

Q ss_pred             eEEEEECC-------CCCeEEEEeCCceEEEEeCCCCcccccc--CCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-
Q 010296          162 VTAVALSE-------DDSKGFSASKDGSILHWDVSSGKGVKYL--WPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-  231 (513)
Q Consensus       162 V~~~~~s~-------~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-  231 (513)
                      -.|++|..       .|+|+|.|+.|..|.|||+.-...+.-.  ....................+|+..|.+|+|+.. 
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            35666643       3689999999999999998643222100  0000000000001112234579999999999875 


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEE
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI  310 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  310 (513)
                      .+.||+|+.|.+|++||+.++++..++..|...|.++.|+|.. .+|++|+.|++|.+.|++........-...+.|-.+
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence            4589999999999999999999999999999999999999965 578899999999999999644443333467789999


Q ss_pred             EeeCCC--eEEEEeCCCcEEEEecCCCe-e-eEEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296          311 DCLRKE--RVLTVGRDRSMQLWKVPEES-R-LVFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       311 ~~~~~~--~~~~~~~d~~i~iwd~~~~~-~-~~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                      +|.+..  .++++..||+|+-+|++... + .....|..+|.++++++..  .+++++.++.|++|++....+.......
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~  415 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS  415 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc
Confidence            998854  67788899999999999863 3 3778899999999998764  5889999999999998765543332211


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCC
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .                                   .-+...|.++.|+- -+|+.|+..+.++|||+.+.
T Consensus       416 ~-----------------------------------~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  416 F-----------------------------------KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             c-----------------------------------cccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            1                                   11126677777765 36778888889999999876

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=1.8e-22  Score=173.89  Aligned_cols=242  Identities=18%  Similarity=0.306  Sum_probs=186.5

Q ss_pred             CCCCcccEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC----------------cceeeeccCcCCCeEEEEEecCC-Ce
Q 010296          216 ATKQSKHILALAVSSDG--RYLASGGLDRHIHLWDTRI----------------QEHIQAFPGHRGPVSCLTFRQGT-SE  276 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~  276 (513)
                      ..+|.+.+..+..++-+  .+.++-+..|.|.||++..                .+++.++.+|...=++|+|||-. ..
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            45677778877777754  4566667789999999742                34677888999999999999933 34


Q ss_pred             EEEEeCCCcEEEEeCCCCcee---EEeecccCCeEEEEeeC--CCeEEEEeCCCcEEEEecCCC---eeeEEecCCCCee
Q 010296          277 LFSGSFDRTVKIWNAEDRAYI---STLFGHQSEVLTIDCLR--KERVLTVGRDRSMQLWKVPEE---SRLVFRAPASSLE  348 (513)
Q Consensus       277 l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~v~  348 (513)
                      |++|..-+.|++|...++...   .-+.+|...|-.++|+|  ++.|++|+.|++|+|||++.+   ..+....|.+.|.
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            888888899999999887653   33567999999999999  467889999999999999987   4567789999999


Q ss_pred             EEEeecCCe-EEEEeCCCCEEEEecCCC---CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296          349 CCCFISNDE-FLSGSDDGSIELWSLLRK---KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW  424 (513)
Q Consensus       349 ~~~~~~~~~-~~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  424 (513)
                      .+.|+..-. |++|+.||+++|||+++-   +++..++                                     .|..+
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-------------------------------------~Hk~p  349 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-------------------------------------YHKAP  349 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-------------------------------------eccCC
Confidence            999998764 789999999999999864   4555553                                     44556


Q ss_pred             EEEEEEecCC-CEEEEecCCCcEEEEEeCCCC---------------cceeeeeecCcccEEEEEEeecCCCEEEEEecC
Q 010296          425 VSSVTVCGGS-DLAASGAGNGSVRLWAIESET---------------KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ  488 (513)
Q Consensus       425 i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~---------------~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~  488 (513)
                      |++|.|+|.. ..|++++.|.+|.|||+.-..               .+.+.++.......|..|.|++.-+-++++++-
T Consensus       350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~  429 (440)
T KOG0302|consen  350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI  429 (440)
T ss_pred             eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecc
Confidence            9999999954 678888999999999996431               122334443335568889999987766655577


Q ss_pred             CCccccc
Q 010296          489 EPRLGRW  495 (513)
Q Consensus       489 dg~v~~W  495 (513)
                      || +.||
T Consensus       430 dG-fnVf  435 (440)
T KOG0302|consen  430 DG-FNVF  435 (440)
T ss_pred             cc-eeEE
Confidence            76 4445

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.90  E-value=1.3e-22  Score=185.99  Aligned_cols=131  Identities=18%  Similarity=0.294  Sum_probs=106.9

Q ss_pred             cchhhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          150 DEFRVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ..+..+.+|...|+.+.|+| ...+||||+.|..|+||.+..+-... +            ..+...+.+..-.|-++.|
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-L------------Sape~~~g~~~~~vE~l~f  136 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-L------------SAPEIDVGGGNVIVECLRF  136 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-c------------CCcceeecCCceEEEEeec
Confidence            35667889999999999999 45678899999999999998443221 1            1122233445667899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED  293 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  293 (513)
                      +|...-|+..+..|+++|||+.+++.+..+.+|...|.++.|+.||..|++++.|..|+|||.+.
T Consensus       137 HpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  137 HPTADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             ccCcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            99655555555579999999999999999999999999999999999999999999999999874

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=5.6e-22  Score=182.83  Aligned_cols=272  Identities=14%  Similarity=0.285  Sum_probs=209.6

Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL  240 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  240 (513)
                      .|+.++|-|||..|+.+.. ..+.|||...|..+.++                   .+|...|+|++|+.+|+.+|+|+.
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtL-------------------KgHKDtVycVAys~dGkrFASG~a   73 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPL-------------------KGHKDTVYCVAYAKDGKRFASGSA   73 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCccccccc-------------------ccccceEEEEEEccCCceeccCCC
Confidence            8999999999999887764 57899999999988754                   899999999999999999999999


Q ss_pred             CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-
Q 010296          241 DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-  319 (513)
Q Consensus       241 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-  319 (513)
                      |..|.+|+..- +-+..+. |...|.||.|+|-...|++++.. ..-+|........ .. .....+.+.+|..+|+++ 
T Consensus        74 DK~VI~W~~kl-EG~LkYS-H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsWtnDGqyla  148 (1081)
T KOG1538|consen   74 DKSVIIWTSKL-EGILKYS-HNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSWTNDGQYLA  148 (1081)
T ss_pred             ceeEEEecccc-cceeeec-cCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hh-hhheeEEEeeecCCCcEEE
Confidence            99999998542 2233343 99999999999999999998764 4678887654322 21 245578899999999766 


Q ss_pred             EEeCCCcEEEEecCCCeeeEEe---cCCCCeeEEEeecCC------eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccC
Q 010296          320 TVGRDRSMQLWKVPEESRLVFR---APASSLECCCFISND------EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDG  390 (513)
Q Consensus       320 ~~~~d~~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~------~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  390 (513)
                      .|-.+|+|.+-+-.........   +...+|.+++|+|..      .+++.....++.+|.+... .+..-...      
T Consensus       149 lG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L------  221 (1081)
T KOG1538|consen  149 LGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRAL------  221 (1081)
T ss_pred             EeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccC------
Confidence            5668999999876655554443   367899999999863      2668888888888886543 22211100      


Q ss_pred             CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEE
Q 010296          391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFV  470 (513)
Q Consensus       391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v  470 (513)
                                                     .-...|+.+.++|.+++.|+.|+.+.+|--..  ..+-++..  ....|
T Consensus       222 -------------------------------~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G--vrLGTvg~--~D~WI  266 (1081)
T KOG1538|consen  222 -------------------------------NFDPCCISYFTNGEYILLGGSDKQLSLFTRDG--VRLGTVGE--QDSWI  266 (1081)
T ss_pred             -------------------------------CCCchhheeccCCcEEEEccCCCceEEEeecC--eEEeeccc--cceeE
Confidence                                           00167899999999999999999999997543  23333333  46789


Q ss_pred             EEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          471 NSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       471 ~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      +.|+..|++++++.| ..||+|..|++...
T Consensus       267 WtV~~~PNsQ~v~~G-CqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  267 WTVQAKPNSQYVVVG-CQDGTIACYNLIFS  295 (1081)
T ss_pred             EEEEEccCCceEEEE-EccCeeehhhhHHh
Confidence            999999999999999 89999999986543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=3.2e-22  Score=178.18  Aligned_cols=263  Identities=16%  Similarity=0.212  Sum_probs=196.1

Q ss_pred             EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCcc--
Q 010296          177 ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY-LASGGLDRHIHLWDTRIQE--  253 (513)
Q Consensus       177 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~vwd~~~~~--  253 (513)
                      ++....++|||+........+.                 .......+.++.|+....+ +++.+.|..|++|.-. ++  
T Consensus         8 aS~gd~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~   69 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTP   69 (673)
T ss_pred             eccCCceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEeccc-CCCC
Confidence            3334579999998776655431                 1112233899999876542 2334567889999733 32  


Q ss_pred             -e--eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-CCeEEEEeCCCcEEE
Q 010296          254 -H--IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-KERVLTVGRDRSMQL  329 (513)
Q Consensus       254 -~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~i~i  329 (513)
                       +  +....+  ..-.|++......++++|+..+.|+|||++...+.+.+++|...|+++.++- |.++++++..|.|.|
T Consensus        70 ~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii  147 (673)
T KOG4378|consen   70 EVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII  147 (673)
T ss_pred             ccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEE
Confidence             1  222222  2344555555568999999999999999998778888999999999999987 457778889999999


Q ss_pred             EecCCCeeeEEecC--CCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296          330 WKVPEESRLVFRAP--ASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH  405 (513)
Q Consensus       330 wd~~~~~~~~~~~~--~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  405 (513)
                      ..+.++.......+  ...+.-+.+++..+  |.+++.+|.|.+||+....++..+.                       
T Consensus       148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~-----------------------  204 (673)
T KOG4378|consen  148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS-----------------------  204 (673)
T ss_pred             EecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh-----------------------
Confidence            99998877644433  34566788998876  5588999999999999988887776                       


Q ss_pred             CCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEE
Q 010296          406 SENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIA  484 (513)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~  484 (513)
                                   ..|..+...|+|+|.. .+|++.+.|..|.+||+.+. .....+   ....+.++|+|+++|.+|++
T Consensus       205 -------------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l---~y~~Plstvaf~~~G~~L~a  267 (673)
T KOG4378|consen  205 -------------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRL---TYSHPLSTVAFSECGTYLCA  267 (673)
T ss_pred             -------------hhccCCcCcceecCCccceEEEecccceEEEeecccc-ccccee---eecCCcceeeecCCceEEEe
Confidence                         4455558899999954 67889999999999999876 222222   24567899999999999999


Q ss_pred             EecCCCcccccccCCC
Q 010296          485 GVGQEPRLGRWGHLPA  500 (513)
Q Consensus       485 ~~~~dg~v~~W~~~~~  500 (513)
                      | ...|.|..||+..-
T Consensus       268 G-~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  268 G-NSKGELIAYDMRST  282 (673)
T ss_pred             e-cCCceEEEEecccC
Confidence            9 88999999998654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=4.4e-21  Score=162.17  Aligned_cols=284  Identities=17%  Similarity=0.268  Sum_probs=202.3

Q ss_pred             eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc-------CCCCE
Q 010296          162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS-------SDGRY  234 (513)
Q Consensus       162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------~~~~~  234 (513)
                      ...+.|+|||..|++-+.|..+.+|++.....-... +....     ..............|+..+|-       |+..+
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-~~~~~-----~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-DGPLN-----FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCC-CCccc-----cccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence            456799999999999999999999998632211100 00000     000000112234568888886       57789


Q ss_pred             EEEEeCCCcEEEEeCCCcceeeeccC--cCC---CeEEEEEecCCCeEEEEeCCCcEEEEeC-CCCce--eEE-e----e
Q 010296          235 LASGGLDRHIHLWDTRIQEHIQAFPG--HRG---PVSCLTFRQGTSELFSGSFDRTVKIWNA-EDRAY--IST-L----F  301 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~--~~~-~----~  301 (513)
                      +++.+.+.-|++||.-+|+....+.+  |..   ...+++|+|||.+|++|. ...|+++|+ +.|+.  +.. +    .
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccc
Confidence            99999999999999999998877765  332   457899999999998875 678999999 44432  111 1    2


Q ss_pred             cccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEe-CCCCEEEEecCCC-
Q 010296          302 GHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGS-DDGSIELWSLLRK-  375 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~-~dg~i~iwd~~~~-  375 (513)
                      +..+-+.+++|+|..  .+++++....+-||.-....++ .+.+|...|+.++|.++|. |++|+ .+..|..||++.. 
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence            346678899999943  5668888888888887766665 5668999999999999985 77765 4788999999864 


Q ss_pred             CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC
Q 010296          376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET  455 (513)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~  455 (513)
                      .++..+..+....                                  ..-.-....|++++|++|+.||.|++||++...
T Consensus       285 ~pv~~L~rhv~~T----------------------------------NQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  285 DPVYALERHVGDT----------------------------------NQRILFDLDPKGEILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             chhhhhhhhccCc----------------------------------cceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence            4555554322100                                  002234556899999999999999999999853


Q ss_pred             cceeeeeecCcccEEEEEEeecCCCEEEEEecC
Q 010296          456 KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ  488 (513)
Q Consensus       456 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~  488 (513)
                      ..+..+.  .+...|+.|+++|--+++++++|.
T Consensus       331 n~~sv~~--~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  331 NEVSVTG--NYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             Ccccccc--cccccccceecCcccceeeeccCc
Confidence            4333333  367889999999999999888554

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=2e-21  Score=178.41  Aligned_cols=250  Identities=18%  Similarity=0.237  Sum_probs=180.6

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      +.....|...|..+.|-|....|++++.|.++++||+....+...-                 ...+|...|.+++|.|.
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-----------------~~~GH~~SvkS~cf~~~  155 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-----------------LNLGHTGSVKSECFMPT  155 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-----------------eecccccccchhhhccC
Confidence            4566789999999999997778899999999999999988866531                 24799999999999995


Q ss_pred             -CCEEEEEeCCCcEEEEeCCCcc---------------------------eeeeccCcCCCeEE---EEEecCCCeEEEE
Q 010296          232 -GRYLASGGLDRHIHLWDTRIQE---------------------------HIQAFPGHRGPVSC---LTFRQGTSELFSG  280 (513)
Q Consensus       232 -~~~l~s~~~dg~i~vwd~~~~~---------------------------~~~~~~~~~~~v~~---~~~~~~~~~l~~~  280 (513)
                       ...|++|+.||.|.|||++-..                           .+.....+...|.+   +.+..|...|+++
T Consensus       156 n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSa  235 (720)
T KOG0321|consen  156 NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASA  235 (720)
T ss_pred             CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeec
Confidence             5678999999999999975322                           01112234455555   5666788889988


Q ss_pred             eC-CCcEEEEeCCCCceeEEe--------ecc---cCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee---EEecCC
Q 010296          281 SF-DRTVKIWNAEDRAYISTL--------FGH---QSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL---VFRAPA  344 (513)
Q Consensus       281 ~~-dg~i~iwd~~~~~~~~~~--------~~~---~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~---~~~~~~  344 (513)
                      +. |+.|+|||++........        ..|   .-.+.++.....| ++++.+.|+.|++|++.+....   .+.++.
T Consensus       236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~  315 (720)
T KOG0321|consen  236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL  315 (720)
T ss_pred             cCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc
Confidence            87 999999999876543222        122   2234555554444 6777788999999999876543   222221


Q ss_pred             C--CeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCC
Q 010296          345 S--SLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSA  421 (513)
Q Consensus       345 ~--~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  421 (513)
                      .  ....-..+|++. +++|+.|...++|.+.+...-..+.                                    .+|
T Consensus       316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------------------------------------~Gh  359 (720)
T KOG0321|consen  316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------------------------------------LGH  359 (720)
T ss_pred             cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh------------------------------------hCc
Confidence            1  112234577876 7799999999999998765443333                                    344


Q ss_pred             cceEEEEEEecCC-CEEEEecCCCcEEEEEeCCC
Q 010296          422 YSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       422 ~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~  454 (513)
                      ...|++++|.|.. .-++|++.|..++||++..+
T Consensus       360 t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  360 TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            4559999998843 34667799999999999765

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=1.1e-21  Score=178.71  Aligned_cols=241  Identities=16%  Similarity=0.253  Sum_probs=189.8

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAED  293 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~  293 (513)
                      .+.+|.+.|.+|...|.|.+|++|+.||+|+||.+.++.++.++. ..+.|.|++|+|.+.. ++++.....+.|.+..-
T Consensus       395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            578999999999999999999999999999999999999999887 5678999999997754 33333333344443211


Q ss_pred             C-------------------------------------ceeEEeecccCCeEEEEeeCCCeEE-EEeC---CCcEEEEec
Q 010296          294 R-------------------------------------AYISTLFGHQSEVLTIDCLRKERVL-TVGR---DRSMQLWKV  332 (513)
Q Consensus       294 ~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~---d~~i~iwd~  332 (513)
                      |                                     .-+.....|...|..+.|+..|.++ +...   ...|.|+.+
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence            1                                     0122233478889999999988554 4432   467889998


Q ss_pred             CCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCC
Q 010296          333 PEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNL  411 (513)
Q Consensus       333 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  411 (513)
                      .....+ .+....+.+.++.|+|...++..+....|+|||+.....+..+.                             
T Consensus       554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~-----------------------------  604 (733)
T KOG0650|consen  554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLL-----------------------------  604 (733)
T ss_pred             ccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHh-----------------------------
Confidence            766554 45567788999999998865555567789999998876665553                             


Q ss_pred             CCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCc
Q 010296          412 NPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPR  491 (513)
Q Consensus       412 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~  491 (513)
                              ....+|.+++++|.|.-|+.|+.|+.+..||+.-..++.+.+..  |...|++|+|++.-.++++| ++||+
T Consensus       605 --------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~-sdDgt  673 (733)
T KOG0650|consen  605 --------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASG-SDDGT  673 (733)
T ss_pred             --------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeee-cCCCc
Confidence                    23355999999999999999999999999999988778887776  88899999999999998888 99999


Q ss_pred             ccccc
Q 010296          492 LGRWG  496 (513)
Q Consensus       492 v~~W~  496 (513)
                      +.++.
T Consensus       674 v~Vfh  678 (733)
T KOG0650|consen  674 VIVFH  678 (733)
T ss_pred             EEEEe
Confidence            99884

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.88  E-value=8.1e-22  Score=161.93  Aligned_cols=285  Identities=18%  Similarity=0.219  Sum_probs=196.6

Q ss_pred             ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ..++..|++|.+.|+++.|-.+++ |++|..-|.|++|++++......+                  ...|...|+.+.-
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~------------------r~~g~~~it~lq~   64 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLI------------------RLFGRLFITNLQS   64 (323)
T ss_pred             CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhh------------------hhhccceeeceee
Confidence            345667889999999999998876 899999999999999988766543                  1256778999998


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecC-----CC----eEEEEeCCC-cEEEEeCCCCceeE
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG-----TS----ELFSGSFDR-TVKIWNAEDRAYIS  298 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~----~l~~~~~dg-~i~iwd~~~~~~~~  298 (513)
                      -|+ ..|.+-+.|+.+.+|++.-+..+..   |.-.++++.|.+-     ++    .++.-+... .+++-|......+.
T Consensus        65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~  140 (323)
T KOG0322|consen   65 IPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ  140 (323)
T ss_pred             cCC-cchhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeE
Confidence            887 5688889999999999986554322   4445555655442     11    111111100 02222222211122


Q ss_pred             Ee----ecccCCeEEEEeeC-CC-e--EEEEeCCCcEEEEecCCCeee-----------EEecCCCCeeEEEeecCC-eE
Q 010296          299 TL----FGHQSEVLTIDCLR-KE-R--VLTVGRDRSMQLWKVPEESRL-----------VFRAPASSLECCCFISND-EF  358 (513)
Q Consensus       299 ~~----~~~~~~v~~~~~~~-~~-~--~~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~v~~~~~~~~~-~~  358 (513)
                      ..    .+..+.+.+..+.- .+ +  +++|-.+|.+.+||+.++..+           ....|..++.++.+.+.- +=
T Consensus       141 i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG  220 (323)
T KOG0322|consen  141 IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG  220 (323)
T ss_pred             ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC
Confidence            11    12345566666432 22 3  336668999999999986332           234567788888877542 35


Q ss_pred             EEEeCCCCEEEEecCCCC--e--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC
Q 010296          359 LSGSDDGSIELWSLLRKK--P--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS  434 (513)
Q Consensus       359 ~~~~~dg~i~iwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  434 (513)
                      ++|+.+..+..|++....  .  ...+...++                                     .|..+.+-||+
T Consensus       221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknp-------------------------------------Gv~gvrIRpD~  263 (323)
T KOG0322|consen  221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNP-------------------------------------GVSGVRIRPDG  263 (323)
T ss_pred             cCCCccccceeeeeccccCcccccceEEecCC-------------------------------------CccceEEccCC
Confidence            677788888888876431  1  111211121                                     18889999999


Q ss_pred             CEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          435 DLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       435 ~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      +++||+++|+.||||+.++. .++..+..  |.+.|++++|+|+...+|++ +.|++|.+|++
T Consensus       264 KIlATAGWD~RiRVyswrtl-~pLAVLky--Hsagvn~vAfspd~~lmAaa-skD~rISLWkL  322 (323)
T KOG0322|consen  264 KILATAGWDHRIRVYSWRTL-NPLAVLKY--HSAGVNAVAFSPDCELMAAA-SKDARISLWKL  322 (323)
T ss_pred             cEEeecccCCcEEEEEeccC-Cchhhhhh--hhcceeEEEeCCCCchhhhc-cCCceEEeeec
Confidence            99999999999999999998 56666665  88999999999999999999 99999999975

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=2.5e-21  Score=167.87  Aligned_cols=215  Identities=17%  Similarity=0.312  Sum_probs=174.4

Q ss_pred             hhhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          152 FRVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      +-.+.||+++|..++|+| +...||+||.|.+|.||.+..+.....+            ..|...+.+|...|-.++|+|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~gH~rrVg~V~wHP  141 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYGHQRRVGLVQWHP  141 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------ccceEEEeecceeEEEEeecc
Confidence            345679999999999999 5678899999999999999877655433            345556789999999999999


Q ss_pred             C-CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC-CeE
Q 010296          231 D-GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS-EVL  308 (513)
Q Consensus       231 ~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~  308 (513)
                      . .+.|++++.|.+|.+|++.+++.+.++. |...|.++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+ ...
T Consensus       142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~  220 (472)
T KOG0303|consen  142 TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPA  220 (472)
T ss_pred             cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcc
Confidence            5 5688999999999999999999998888 999999999999999999999999999999999999988777776 345


Q ss_pred             EEEeeCCCeEEEEe----CCCcEEEEecCCCee---eEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeE
Q 010296          309 TIDCLRKERVLTVG----RDRSMQLWKVPEESR---LVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVY  379 (513)
Q Consensus       309 ~~~~~~~~~~~~~~----~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~  379 (513)
                      .+.|..++.+++.+    ++..+-+||...-..   .......+.|.--.+.++..  +++|-.|+.|+.|.+....+..
T Consensus       221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~  300 (472)
T KOG0303|consen  221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFV  300 (472)
T ss_pred             eeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCcee
Confidence            56677788888666    478899998765332   23333445555555566654  5688899999999998876543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=2.6e-21  Score=170.88  Aligned_cols=252  Identities=17%  Similarity=0.231  Sum_probs=187.4

Q ss_pred             CCCCCcccEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCcc----eeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEE
Q 010296          215 RATKQSKHILALAVSSDG--RYLASGGLDRHIHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVK  287 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~  287 (513)
                      ...-+...|++++|+|..  +++|+|..-|+|-+||+.+.+    -+..+..|.++|.+|.|+|.. ..+++.+.||+|+
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR  260 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR  260 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence            345678899999999954  588899999999999995332    356677899999999999954 5799999999999


Q ss_pred             EEeCCCCce--eEEeecccCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe--EEE
Q 010296          288 IWNAEDRAY--ISTLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE--FLS  360 (513)
Q Consensus       288 iwd~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~--~~~  360 (513)
                      +-|+.+...  +..+......+..+.|+.. ..++++..=|.+.+||+++....  ....|...|..++++|..-  |++
T Consensus       261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT  340 (498)
T KOG4328|consen  261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT  340 (498)
T ss_pred             eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence            999987644  3333324445667777764 46667877789999999987653  5566777999999999873  889


Q ss_pred             EeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe
Q 010296          361 GSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG  440 (513)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g  440 (513)
                      ++.|++++|||++.......     +                            .+....|...|.+..|||.+-.|+|.
T Consensus       341 ~s~D~T~kIWD~R~l~~K~s-----p----------------------------~lst~~HrrsV~sAyFSPs~gtl~TT  387 (498)
T KOG4328|consen  341 ASLDQTAKIWDLRQLRGKAS-----P----------------------------FLSTLPHRRSVNSAYFSPSGGTLLTT  387 (498)
T ss_pred             cccCcceeeeehhhhcCCCC-----c----------------------------ceecccccceeeeeEEcCCCCceEee
Confidence            99999999999987533221     0                            01115566669999999998889999


Q ss_pred             cCCCcEEEEEeCCCCcceeeeeecCccc------EEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          441 AGNGSVRLWAIESETKDIQPLYNLPLVG------FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       441 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~------~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      +.|..|+|||..--.....++..++|..      ......|.|+..+++++ ..-..|-+++-..+
T Consensus       388 ~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg-~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  388 CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVG-RYPRPIDVFDGNGG  452 (498)
T ss_pred             ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEe-ccCcceeEEcCCCC
Confidence            9999999999852212223333333422      24457899999999998 66667888865443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=2.2e-20  Score=155.49  Aligned_cols=250  Identities=18%  Similarity=0.306  Sum_probs=190.0

Q ss_pred             CCCCcccEEEEEEcC-CCCEEEEEeCC-------CcEEEEeCCCc---------ceeeecc-CcCCCeEEEEEecCCCeE
Q 010296          216 ATKQSKHILALAVSS-DGRYLASGGLD-------RHIHLWDTRIQ---------EHIQAFP-GHRGPVSCLTFRQGTSEL  277 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~-~~~~l~s~~~d-------g~i~vwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~l  277 (513)
                      +..|.+.|+.|+-+| +.+.|+++..+       -.+.||.+...         +++..+. .+-+.|.|+.|.|++..|
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl  138 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL  138 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence            467888999999999 45566666542       24779987532         3344444 356689999999999988


Q ss_pred             EEEeCCCcEEEEeCCCCce-eEEee-----cccCCeEEEEeeC--CCeEEEEeCCCcEEEEecCCCeee--EEecCCCCe
Q 010296          278 FSGSFDRTVKIWNAEDRAY-ISTLF-----GHQSEVLTIDCLR--KERVLTVGRDRSMQLWKVPEESRL--VFRAPASSL  347 (513)
Q Consensus       278 ~~~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v  347 (513)
                      ++-. |..|.+|++..+.. +..+.     .+....++-+|+|  ++..+.+..++++..||+++....  ....|...+
T Consensus       139 asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~v  217 (370)
T KOG1007|consen  139 ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRV  217 (370)
T ss_pred             EEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhccee
Confidence            8776 88999999987655 33332     2455677888998  678888889999999999987665  456788889


Q ss_pred             eEEEeecCCe--EEEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296          348 ECCCFISNDE--FLSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW  424 (513)
Q Consensus       348 ~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  424 (513)
                      ..+.|.|+..  |++++.||.|+|||.+..+ ++..+                                     ..|..|
T Consensus       218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el-------------------------------------~~HsHW  260 (370)
T KOG1007|consen  218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL-------------------------------------PGHSHW  260 (370)
T ss_pred             eeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc-------------------------------------CCCceE
Confidence            9999999985  7899999999999998754 44444                                     677889


Q ss_pred             EEEEEEecC-CCEEEEecCCCcEEEEEeCCCC--------------------cceeeee-----e-cCcccEEEEEEeec
Q 010296          425 VSSVTVCGG-SDLAASGAGNGSVRLWAIESET--------------------KDIQPLY-----N-LPLVGFVNSLAFAK  477 (513)
Q Consensus       425 i~~~~~s~~-~~~l~~g~~dg~v~vwd~~~~~--------------------~~~~~~~-----~-~~~~~~v~~v~~sp  477 (513)
                      |.++.|+|. .++|++|+.|..|.+|...+-.                    ...+++.     . -.|...|.+++||.
T Consensus       261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs  340 (370)
T KOG1007|consen  261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS  340 (370)
T ss_pred             EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence            999999994 4688999999999999875321                    0111111     1 12678899999999


Q ss_pred             CCCEEEEEecCCCcccccccCCCccc
Q 010296          478 SGQFLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       478 ~~~~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                      -.++++++.+.||+|.|=.+.+..|-
T Consensus       341 adPWiFASLSYDGRviIs~V~r~~ky  366 (370)
T KOG1007|consen  341 ADPWIFASLSYDGRVIISSVPRFLKY  366 (370)
T ss_pred             CCCeeEEEeccCceEEeecCChhhhh
Confidence            99999999999999988766655443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.4e-21  Score=177.14  Aligned_cols=292  Identities=21%  Similarity=0.276  Sum_probs=204.2

Q ss_pred             CeEEEEeCCceEEEE--eCCCCccccccCCChhhhcc--CCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010296          172 SKGFSASKDGSILHW--DVSSGKGVKYLWPSEEVLKS--HGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLW  247 (513)
Q Consensus       172 ~~l~t~~~dg~v~iw--d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw  247 (513)
                      +..++...+....+|  ++........+. .....+.  ...+.+......|...|+.++|+|....|++++.+|.|.+|
T Consensus       243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~d-d~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~W  321 (577)
T KOG0642|consen  243 SISVGADEDLMSRLGLGTLAGLTIEDEFD-DLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLW  321 (577)
T ss_pred             CccccCchHHHHhhcccchhccccccccc-chhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhh
Confidence            345566666777777  444333222221 0000000  01122333667889999999999999999999999999999


Q ss_pred             eCCC--------cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC----------ceeEEeecccCCeEE
Q 010296          248 DTRI--------QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR----------AYISTLFGHQSEVLT  309 (513)
Q Consensus       248 d~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~  309 (513)
                      +++.        -+++.+|++|.++|.|+++.+++.++++|+.||+|+.|++...          .....+.||...|+.
T Consensus       322 nLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~  401 (577)
T KOG0642|consen  322 NLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWL  401 (577)
T ss_pred             hhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceee
Confidence            9932        2468899999999999999999999999999999999976421          234567899999999


Q ss_pred             EEeeCC-CeEEEEeCCCcEEEEecCCCeeeEEecCC--CCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296          310 IDCLRK-ERVLTVGRDRSMQLWKVPEESRLVFRAPA--SSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       310 ~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                      +++++. .+|++++.||++++|+.......++....  .....+.+....  ..++...-+.-.++++.....+..+...
T Consensus       402 l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~  481 (577)
T KOG0642|consen  402 LALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS  481 (577)
T ss_pred             eeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeecccc
Confidence            999985 57889999999999999877664443332  223334433322  1223333344444555444444444321


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL  464 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~  464 (513)
                      ....                              ......+..+.++|.+.+.+++..|+.|+++|..++ .++....  
T Consensus       482 ~~~~------------------------------~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-~~l~s~~--  528 (577)
T KOG0642|consen  482 ASPG------------------------------PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-KILHSMV--  528 (577)
T ss_pred             CCCc------------------------------ccccCccceEEecCCCCeeEecccCCceeccccccc-ccchhee--
Confidence            1100                              112233888899999999999999999999999988 3333333  


Q ss_pred             CcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          465 PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       465 ~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .|...++++++.|+|.+|+++ +.|+++++|...
T Consensus       529 a~~~svtslai~~ng~~l~s~-s~d~sv~l~kld  561 (577)
T KOG0642|consen  529 AHKDSVTSLAIDPNGPYLMSG-SHDGSVRLWKLD  561 (577)
T ss_pred             eccceecceeecCCCceEEee-cCCceeehhhcc
Confidence            378899999999999999999 999999999763

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.1e-21  Score=192.11  Aligned_cols=242  Identities=20%  Similarity=0.268  Sum_probs=187.9

Q ss_pred             CcccEEEEEEcCCCCE----EEEEeCCCcEEEEeCCCc------ceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEE
Q 010296          219 QSKHILALAVSSDGRY----LASGGLDRHIHLWDTRIQ------EHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVK  287 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~----l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~  287 (513)
                      .....+.++|.+.|..    ||.|..||.|.+||...-      ..+.++..|.+.|..+.|++... .|++|+.+|.|.
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            3456889999997665    888999999999997642      34667778999999999999765 899999999999


Q ss_pred             EEeCCCCceeEEe--ecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeEEecCC---CCeeEEEeecCC--eE
Q 010296          288 IWNAEDRAYISTL--FGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFRAPA---SSLECCCFISND--EF  358 (513)
Q Consensus       288 iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~--~~  358 (513)
                      |||+...+.....  ......|.+++|+..-  .|++++.+|.+.|||++..+.+......   ..+..++|+|++  ++
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence            9999875544433  2245689999998853  4558888999999999988766333222   347789999998  36


Q ss_pred             EEEeCC---CCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC
Q 010296          359 LSGSDD---GSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS  434 (513)
Q Consensus       359 ~~~~~d---g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  434 (513)
                      ++++.|   -.|.+||++.. .+++++                                     ..|...|.++.|++..
T Consensus       223 ~~As~dd~~PviqlWDlR~assP~k~~-------------------------------------~~H~~GilslsWc~~D  265 (1049)
T KOG0307|consen  223 LVASGDDSAPVIQLWDLRFASSPLKIL-------------------------------------EGHQRGILSLSWCPQD  265 (1049)
T ss_pred             eeecCCCCCceeEeecccccCCchhhh-------------------------------------cccccceeeeccCCCC
Confidence            666654   36999998764 344444                                     2344459999999976


Q ss_pred             -CEEEEecCCCcEEEEEeCCCCcceeeeeecC-cccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          435 -DLAASGAGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       435 -~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                       .+|++++.|+.|.+|+.+++    ..+..++ ....+..+.|+|...-++++.+-||.|.|+.+....
T Consensus       266 ~~lllSsgkD~~ii~wN~~tg----Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  266 PRLLLSSGKDNRIICWNPNTG----EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             chhhhcccCCCCeeEecCCCc----eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence             89999999999999999998    3444444 356799999999999777776999999999877654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=6.3e-20  Score=154.92  Aligned_cols=243  Identities=18%  Similarity=0.249  Sum_probs=186.4

Q ss_pred             CCeEEEEECCCCCeEEE-EeCCceEEEEeCCCCcc---ccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          160 QSVTAVALSEDDSKGFS-ASKDGSILHWDVSSGKG---VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t-~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      +.-+.+.|+||.+-++. +-...++++|.+...+-   ...+.          ..........|.-.|..+-...++.+|
T Consensus       133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v----------~~D~~~f~~kh~v~~i~iGiA~~~k~i  202 (420)
T KOG2096|consen  133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFV----------HIDNLEFERKHQVDIINIGIAGNAKYI  202 (420)
T ss_pred             CCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccc----------cccccccchhcccceEEEeecCCceEE
Confidence            35688999999876664 44566899998754321   11110          011111235677778888888899999


Q ss_pred             EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC---CC-----ceeEEeecccCCe
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE---DR-----AYISTLFGHQSEV  307 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~v  307 (513)
                      ++++.|..|.+|++. |+.+..+......-+..+.+|+|++|++++..--|++|.+-   .|     ..+..+.+|...|
T Consensus       203 msas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV  281 (420)
T KOG2096|consen  203 MSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV  281 (420)
T ss_pred             EEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe
Confidence            999999999999998 89998888777777888999999999999999999999863   22     2356789999999


Q ss_pred             EEEEeeCCC-eEEEEeCCCcEEEEecCCCee-------e-----EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCC
Q 010296          308 LTIDCLRKE-RVLTVGRDRSMQLWKVPEESR-------L-----VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLR  374 (513)
Q Consensus       308 ~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~-------~-----~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~  374 (513)
                      ..++|+++. ++++++.||++++||..-.-.       +     ......+....+.++|.|.+++.+....+++|..++
T Consensus       282 ~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~  361 (420)
T KOG2096|consen  282 LAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED  361 (420)
T ss_pred             eeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc
Confidence            999999976 788999999999999853211       1     111223344589999999988888888999999999


Q ss_pred             CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      ++....++.                                    .|...|++++|+++|+++++++ |..++++.
T Consensus       362 g~~~~~~e~------------------------------------~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  362 GKDYPELED------------------------------------IHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             CccchhHHH------------------------------------hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            887777663                                    3444599999999999999987 56788876

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=5.5e-21  Score=161.96  Aligned_cols=243  Identities=20%  Similarity=0.299  Sum_probs=183.9

Q ss_pred             ccCCCeEEEEECCC----CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-
Q 010296          157 KHRQSVTAVALSED----DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-  231 (513)
Q Consensus       157 ~h~~~V~~~~~s~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-  231 (513)
                      .|...-+.++|+-+    ..+||.||.-|.|+|.|+.+++....+                   .+|...|..|.|+|. 
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-------------------~ghG~sINeik~~p~~  147 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-------------------RGHGGSINEIKFHPDR  147 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-------------------eccCccchhhhcCCCC
Confidence            36777888888764    458999999999999999998877644                   799999999999996 


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeecc---CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE----------
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFP---GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS----------  298 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------  298 (513)
                      .+++++++.|..|++|++++..++..|-   +|...|.++.|++++.+|++++.|.+|++|++...+...          
T Consensus       148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~  227 (385)
T KOG1034|consen  148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP  227 (385)
T ss_pred             CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence            4789999999999999999999988875   599999999999999999999999999999997432111          


Q ss_pred             ------------------EeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecC-CCee----------e----EEecCCC
Q 010296          299 ------------------TLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVP-EESR----------L----VFRAPAS  345 (513)
Q Consensus       299 ------------------~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~~----------~----~~~~~~~  345 (513)
                                        +-..|...|-|+.|.- +.+++-+.++.|..|... -...          .    .+..+..
T Consensus       228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c  306 (385)
T KOG1034|consen  228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC  306 (385)
T ss_pred             CCccCcCCccccccccccccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc
Confidence                              0112455555555543 456688888999999872 1111          0    2233344


Q ss_pred             CeeEEEee--cCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296          346 SLECCCFI--SNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY  422 (513)
Q Consensus       346 ~v~~~~~~--~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  422 (513)
                      .+.-+.|.  +-+. |+.|...|.|.+||+....+...-...+                                 ....
T Consensus       307 ~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~---------------------------------s~~~  353 (385)
T KOG1034|consen  307 DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH---------------------------------SKSG  353 (385)
T ss_pred             ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe---------------------------------cccc
Confidence            45555544  4343 7899999999999999877642211111                                 2223


Q ss_pred             ceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          423 SWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       423 ~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                      ..|...+||.+|.+|+..+.|++|.-||..
T Consensus       354 ~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  354 STVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            449999999999999999999999999864

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.87  E-value=6.9e-22  Score=186.58  Aligned_cols=283  Identities=20%  Similarity=0.258  Sum_probs=213.3

Q ss_pred             ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      .+.++.|.+|..+|+|+.|...|.+++||+.|..|+||...++.++..                   ..+|.+.|+.++.
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlav  240 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAV  240 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhcc
Confidence            455677889999999999999999999999999999999999888764                   4899999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe---e-ccc
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL---F-GHQ  304 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~-~~~  304 (513)
                      +.+..++++++.|..|++|.+..+.++..+.+|++.|++++|+|-    .+.+.||++++||.+-...+..-   . ...
T Consensus       241 s~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~  316 (1113)
T KOG0644|consen  241 SSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEK  316 (1113)
T ss_pred             chhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccc
Confidence            999999999999999999999999999999999999999999994    37888999999998721111110   0 122


Q ss_pred             CCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecC--CeEEEEeCCCCEEEEecCCCCeeEEe
Q 010296          305 SEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISN--DEFLSGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       305 ~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                      ..+.++.|...+ .+++++.++.-..|.+.....     +...+.-+..+.+  ...+++-.+-.+.+|++.++...+.+
T Consensus       317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~-----~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l  391 (1113)
T KOG0644|consen  317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW-----RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL  391 (1113)
T ss_pred             cceeeeeccccccccccccCCcccccchhhHhhh-----hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh
Confidence            345556665544 678999998888876542111     1111111111111  22456666778889999888766655


Q ss_pred             ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCcceee
Q 010296          382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETKDIQP  460 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~~  460 (513)
                                                           .+|...+..+.++|-. +...+++.||...|||+-.+ .+++.
T Consensus       392 -------------------------------------~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg-~pik~  433 (1113)
T KOG0644|consen  392 -------------------------------------MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG-IPIKH  433 (1113)
T ss_pred             -------------------------------------cccccceeeeeecCCCcHhhhhccCCCceEeeecccC-Cccee
Confidence                                                 4455558899999955 55668899999999999888 44444


Q ss_pred             eeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          461 LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       461 ~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      .. .+ .+.+...+||++|..++.. .+-|.+.|...-.+
T Consensus       434 y~-~g-h~kl~d~kFSqdgts~~ls-d~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  434 YF-IG-HGKLVDGKFSQDGTSIALS-DDHGQLYILGTGQS  470 (1113)
T ss_pred             ee-cc-cceeeccccCCCCceEecC-CCCCceEEeccCCC
Confidence            43 33 4567778999999999887 77788888865443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=1.4e-18  Score=169.96  Aligned_cols=290  Identities=30%  Similarity=0.490  Sum_probs=226.1

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCc-cccccCCChhhhccCCCCCCCCCCCCCc-ccEEEEEE-cC
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK-GVKYLWPSEEVLKSHGAKDPQGRATKQS-KHILALAV-SS  230 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-s~  230 (513)
                      .+..|...|.++.|.+.+..++.++.|+.+.+|+..... ....+                   ..+. ..+..+.+ ++
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  120 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL-------------------EGLHDSSVSKLALSSP  120 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEE-------------------eccCCCceeeEEEECC
Confidence            566899999999999999999999999999999998876 33332                   1211 35677777 78


Q ss_pred             CCC-EEEEEeC-CCcEEEEeCCC-cceeeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCceeEEeecccCC
Q 010296          231 DGR-YLASGGL-DRHIHLWDTRI-QEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRAYISTLFGHQSE  306 (513)
Q Consensus       231 ~~~-~l~s~~~-dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~  306 (513)
                      ++. +++..+. ++.+.+|++.. ......+..|...|..++|+|++.++++++. ++.+++|++..+..+..+.+|...
T Consensus       121 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (466)
T COG2319         121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP  200 (466)
T ss_pred             CcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc
Confidence            777 5555444 89999999988 7888888899999999999999998888885 999999999998888888889999


Q ss_pred             eEEEEeeCCCe-EEEE-eCCCcEEEEecCCCeeeE--EecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCe-eEE
Q 010296          307 VLTIDCLRKER-VLTV-GRDRSMQLWKVPEESRLV--FRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKP-VYI  380 (513)
Q Consensus       307 v~~~~~~~~~~-~~~~-~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~-~~~  380 (513)
                      +.++.|+|++. ++++ +.++.|++|+...+....  +..|.... ...|++++ .+++++.++.+++|++..... +..
T Consensus       201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  279 (466)
T COG2319         201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT  279 (466)
T ss_pred             eEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE
Confidence            99999999885 5544 889999999888665554  55555554 33788988 577899999999999987765 333


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP  460 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~  460 (513)
                      + ..                                    |...+.++.|+|++..+++++.|+.+.+|++.... ....
T Consensus       280 ~-~~------------------------------------~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  321 (466)
T COG2319         280 L-SG------------------------------------HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSS  321 (466)
T ss_pred             E-ec------------------------------------CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEE
Confidence            3 11                                    12339999999988888889989999999887762 2222


Q ss_pred             eeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          461 LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       461 ~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      .....|...+..+.|.+++..++.+...|+.+.+|+.....
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             eeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            22233666799999943435666665677899999887665

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=1.1e-20  Score=174.45  Aligned_cols=249  Identities=18%  Similarity=0.267  Sum_probs=198.5

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +.++.....++++++|.+.|+|++|+.||+.+|+|+.|..|.+|.-.-...++                     ..|...
T Consensus        37 iyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk---------------------YSH~D~   95 (1081)
T KOG1538|consen   37 VYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK---------------------YSHNDA   95 (1081)
T ss_pred             EEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee---------------------eccCCe
Confidence            46777888899999999999999999999999999999999999976554443                     479999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee--EEe
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI--STL  300 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~  300 (513)
                      |.|+.|+|-...|++++-. ..-+|....... ...+ ....|.+.+|..||++|+.|-.+|+|.+-+-.....+  ...
T Consensus        96 IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rp  172 (1081)
T KOG1538|consen   96 IQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERP  172 (1081)
T ss_pred             eeEeecCchHHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCC
Confidence            9999999999999999854 467898654432 2222 3467889999999999999999999999875433222  222


Q ss_pred             ecccCCeEEEEeeCC------CeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecC
Q 010296          301 FGHQSEVLTIDCLRK------ERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLL  373 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~------~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~  373 (513)
                      -+...+|++++|+|.      ..+.++....++.+|.+.....-......-...|+.+.++|. ++.|+.|+.+++|. +
T Consensus       173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R  251 (1081)
T KOG1538|consen  173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-R  251 (1081)
T ss_pred             CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-e
Confidence            346779999999984      246688889999999987665555555666778899999996 67999999999997 4


Q ss_pred             CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296          374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~  453 (513)
                      .|-.+.++                                     .....||++++..|++++++.|+.||+|-.|++-.
T Consensus       252 ~GvrLGTv-------------------------------------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  252 DGVRLGTV-------------------------------------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             cCeEEeec-------------------------------------cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            44444443                                     23456799999999999999999999999999853

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.5e-20  Score=160.15  Aligned_cols=281  Identities=16%  Similarity=0.246  Sum_probs=198.4

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC--CCCEEEEEeCCCcEEEEeC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS--DGRYLASGGLDRHIHLWDT  249 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~  249 (513)
                      ..+|++...|.|++||..+++.+..+                   .++...+..+.|..  ....+.+|+.||+|++||+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~f-------------------k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~  101 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEF-------------------KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI  101 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhee-------------------cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence            56888999999999999998877654                   66777788888876  5678899999999999999


Q ss_pred             CCcceeee--ccCcC-CCeEEEEEecCCCeEEEEe----CCCcEEEEeCCCCce-eEEe-ecccCCeEEEEeeCC--CeE
Q 010296          250 RIQEHIQA--FPGHR-GPVSCLTFRQGTSELFSGS----FDRTVKIWNAEDRAY-ISTL-FGHQSEVLTIDCLRK--ERV  318 (513)
Q Consensus       250 ~~~~~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~--~~~  318 (513)
                      ++...+..  +..+. .+..+++....++.+++|+    .+..|.+||++..+. +..+ ..|...|+++.|+|.  +.|
T Consensus       102 Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlL  181 (376)
T KOG1188|consen  102 RSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLL  181 (376)
T ss_pred             ecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeE
Confidence            87765443  33444 4667777776777777775    377899999998766 4443 579999999999995  477


Q ss_pred             EEEeCCCcEEEEecCCCee----eEEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296          319 LTVGRDRSMQLWKVPEESR----LVFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK  392 (513)
Q Consensus       319 ~~~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  392 (513)
                      ++|+.||.|.+||+.....    .....+.+.|.++.|..++  ++.+-+...+..+|++..+.+...+....-......
T Consensus       182 lSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r  261 (376)
T KOG1188|consen  182 LSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR  261 (376)
T ss_pred             EeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence            7999999999999976532    2455677889999999998  688999999999999999886655543211000000


Q ss_pred             CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CCcEEEEEeCC--CCcceeeeeec--Ccc
Q 010296          393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NGSVRLWAIES--ETKDIQPLYNL--PLV  467 (513)
Q Consensus       393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~v~vwd~~~--~~~~~~~~~~~--~~~  467 (513)
                                               ......++.......++.+++.++. -|...++-+..  .....+....+  .|.
T Consensus       262 -------------------------~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~  316 (376)
T KOG1188|consen  262 -------------------------KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHE  316 (376)
T ss_pred             -------------------------hhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcH
Confidence                                     0000111222222223445555444 56666666552  11122222211  256


Q ss_pred             cEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          468 GFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       468 ~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      ..|+++.|...+.+|.+| |.||.|.+|..
T Consensus       317 eiVR~i~~~~~~~~l~TG-GEDG~l~~Wk~  345 (376)
T KOG1188|consen  317 EIVRDILFDVKNDVLYTG-GEDGLLQAWKV  345 (376)
T ss_pred             HHHHHHhhhcccceeecc-CCCceEEEEec
Confidence            678999999888999999 99999999985

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=7.3e-19  Score=143.00  Aligned_cols=278  Identities=16%  Similarity=0.182  Sum_probs=197.6

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      ..|.+-+++|.+++|+.|..+|+|.++.+.+...-...         .....+.....+|..+|+.++|+  ..+|++|+
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g   79 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG   79 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence            45777789999999999999999999998754322111         11122233457899999999999  45777777


Q ss_pred             CCCcEEEEeCCCcce------ee--eccCcC-----CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC
Q 010296          240 LDRHIHLWDTRIQEH------IQ--AFPGHR-----GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE  306 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~------~~--~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  306 (513)
                       ||.|+-|..+....      +.  ..+-|.     ..|++|...|..+-+++++.|+.++.||+.+|+..+.+++|+..
T Consensus        80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY  158 (325)
T KOG0649|consen   80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY  158 (325)
T ss_pred             -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence             59999998653221      11  111122     35889999998888888889999999999999999999999999


Q ss_pred             eEEEEe-eCCCeEEEEeCCCcEEEEecCCCeeeEEecCC-----------CCeeEEEeecCCeEEEEeCCCCEEEEecCC
Q 010296          307 VLTIDC-LRKERVLTVGRDRSMQLWKVPEESRLVFRAPA-----------SSLECCCFISNDEFLSGSDDGSIELWSLLR  374 (513)
Q Consensus       307 v~~~~~-~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~  374 (513)
                      |.++.- +..+.+++++.||++++||.++.+........           ..|.+++.+  ...++++....+.+|.++.
T Consensus       159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgGp~lslwhLrs  236 (325)
T KOG0649|consen  159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGGPKLSLWHLRS  236 (325)
T ss_pred             eeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCCCceeEEeccC
Confidence            999987 56789999999999999999998877443322           223444433  2355566677899999999


Q ss_pred             CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .++..++.....                                      +..+.|..+  .+++++..+.|.-|.+..-
T Consensus       237 se~t~vfpipa~--------------------------------------v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  237 SESTCVFPIPAR--------------------------------------VHLVDFVDD--CVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             CCceEEEecccc--------------------------------------eeEeeeecc--eEEEeccccceeeeeeccE
Confidence            999988875332                                      777788655  7888888888999998653


Q ss_pred             CcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296          455 TKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W  495 (513)
                         ++...... ....++..|+..--.+++..|...++.+.
T Consensus       277 ---l~a~ip~~-s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  277 ---LQANIPVE-STACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ---EEEeccCC-ccceeeecccCCceEEEEecccceeeeee
Confidence               22222111 22244455543333444554777777766

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.6e-21  Score=187.81  Aligned_cols=247  Identities=19%  Similarity=0.290  Sum_probs=195.2

Q ss_pred             CCCeEEEEECCCCCe----EEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC-C
Q 010296          159 RQSVTAVALSEDDSK----GFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG-R  233 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~----l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~  233 (513)
                      ...-+.++|.+.+..    ||.|..||.|.+|+...-..-             ...........|.+.|..+.|++.. +
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~-------------~~~~~la~~~~h~G~V~gLDfN~~q~n  130 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN-------------ASEEVLATKSKHTGPVLGLDFNPFQGN  130 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccC-------------cchHHHhhhcccCCceeeeeccccCCc
Confidence            456789999998776    888999999999998752000             0001122457899999999999965 5


Q ss_pred             EEEEEeCCCcEEEEeCCCcceeeecc--CcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeecccC--CeE
Q 010296          234 YLASGGLDRHIHLWDTRIQEHIQAFP--GHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQS--EVL  308 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~  308 (513)
                      +||+|+.+|.|.|||+..-+.-..+.  .....|.+++|+..- +.|++++.+|.+.|||++..+.+..+..+.+  .+.
T Consensus       131 lLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S  210 (1049)
T KOG0307|consen  131 LLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS  210 (1049)
T ss_pred             eeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence            99999999999999998755444442  245679999998754 4577899999999999999888777765544  467


Q ss_pred             EEEeeCCC--eEEEEeCC---CcEEEEecCCCee--eEEecCCCCeeEEEeecCC-e-EEEEeCCCCEEEEecCCCCeeE
Q 010296          309 TIDCLRKE--RVLTVGRD---RSMQLWKVPEESR--LVFRAPASSLECCCFISND-E-FLSGSDDGSIELWSLLRKKPVY  379 (513)
Q Consensus       309 ~~~~~~~~--~~~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~-~-~~~~~~dg~i~iwd~~~~~~~~  379 (513)
                      .+.|+|+.  ++++++.|   -.|.+||++....  ..+..|...|.++.|.+.+ . +++++.|+.|.+|+..+++.+.
T Consensus       211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~  290 (1049)
T KOG0307|consen  211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG  290 (1049)
T ss_pred             eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence            89999975  67776654   4699999876443  2567899999999999987 4 7799999999999999999988


Q ss_pred             EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EEEEecCCCcEEEEEeCCCC
Q 010296          380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LAASGAGNGSVRLWAIESET  455 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~v~vwd~~~~~  455 (513)
                      .+.                                     ....|+..+.|+|... +|++++-||.|.||.+....
T Consensus       291 ~~p-------------------------------------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  291 ELP-------------------------------------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ecC-------------------------------------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            874                                     3446799999999665 88899999999999998763

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=9e-19  Score=163.92  Aligned_cols=273  Identities=13%  Similarity=0.203  Sum_probs=178.8

Q ss_pred             EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEeCC-Ccc
Q 010296          176 SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG-LDRHIHLWDTR-IQE  253 (513)
Q Consensus       176 t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~-~~~  253 (513)
                      +...++.|.+|++.+...+..+                 ....+......++++|++++|++++ .++.|.+|++. ++.
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~-----------------~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~   69 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLL-----------------QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA   69 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeee-----------------eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc
Confidence            4467899999999643221111                 0012234567889999999987765 47889999986 333


Q ss_pred             e--eeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCC-c---eeEEeecccCCeEEEEeeCCCeEE-EEe-CC
Q 010296          254 H--IQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDR-A---YISTLFGHQSEVLTIDCLRKERVL-TVG-RD  324 (513)
Q Consensus       254 ~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d  324 (513)
                      .  +.... .......++|+|++++|++++. ++.|.+|++.+. .   .+..+. +...+.+++++|+++++ +++ .+
T Consensus        70 l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~  147 (330)
T PRK11028         70 LTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKE  147 (330)
T ss_pred             eEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCC
Confidence            2  22222 2345678999999999887764 889999999642 2   222222 23346778899988544 444 57


Q ss_pred             CcEEEEecCCCeeeE-------EecCCCCeeEEEeecCCe-EEEEe-CCCCEEEEecCC--CCe--eEEeecCCCcccCC
Q 010296          325 RSMQLWKVPEESRLV-------FRAPASSLECCCFISNDE-FLSGS-DDGSIELWSLLR--KKP--VYIVKNAHPLLDGL  391 (513)
Q Consensus       325 ~~i~iwd~~~~~~~~-------~~~~~~~v~~~~~~~~~~-~~~~~-~dg~i~iwd~~~--~~~--~~~~~~~~~~~~~~  391 (513)
                      +.|.+|++.+...+.       ..........+.|+|++. ++++. .++.|.+|++..  ++.  +..+... +.    
T Consensus       148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~-p~----  222 (330)
T PRK11028        148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM-PA----  222 (330)
T ss_pred             CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC-CC----
Confidence            999999997633221       112344567899999987 43444 489999999974  222  2222110 00    


Q ss_pred             CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CCcEEEEEeCCCCcceeeeeecCcccEE
Q 010296          392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NGSVRLWAIESETKDIQPLYNLPLVGFV  470 (513)
Q Consensus       392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~v  470 (513)
                                             .   ..+..+...+.++|++++|+++.. ++.|.+|++......+......+.....
T Consensus       223 -----------------------~---~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p  276 (330)
T PRK11028        223 -----------------------D---FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP  276 (330)
T ss_pred             -----------------------c---CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC
Confidence                                   0   011123557899999999998854 6899999997654333333333222345


Q ss_pred             EEEEeecCCCEEEEEecCCCcccccccC
Q 010296          471 NSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       471 ~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      ..+.|+|+|++|+++...+++|.+|.+.
T Consensus       277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        277 RGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            6799999999999996678999999775

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=4.4e-21  Score=173.94  Aligned_cols=252  Identities=21%  Similarity=0.290  Sum_probs=186.4

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR  233 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  233 (513)
                      ++..|.+.|+.++|+|-...|++|+.||+|++|+++....-           ......|...+.+|.++|.|+++.+++.
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-----------~~~~~epi~tfraH~gPVl~v~v~~n~~  357 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-----------AEKDVEPILTFRAHEGPVLCVVVPSNGE  357 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-----------cccceeeeEEEecccCceEEEEecCCce
Confidence            67789999999999999999999999999999999431110           0111234456789999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCc----------ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec-
Q 010296          234 YLASGGLDRHIHLWDTRIQ----------EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG-  302 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-  302 (513)
                      ++++|+.||+|+.|++...          .....+.||...|+.+++++...+|++++.||+|++|+...... .++.. 
T Consensus       358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~  436 (577)
T KOG0642|consen  358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP  436 (577)
T ss_pred             EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc
Confidence            9999999999999976421          23456789999999999999999999999999999999876655 22322 


Q ss_pred             -ccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeEEec--------CCCCeeEEEeecCC-eEEEEeCCCCEEEE
Q 010296          303 -HQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFRA--------PASSLECCCFISND-EFLSGSDDGSIELW  370 (513)
Q Consensus       303 -~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~-~~~~~~~dg~i~iw  370 (513)
                       ..+...++.+-...  ..++...-+.-.++++.....+.+..        ....+..+.+.|.+ ..+++..|+.|+++
T Consensus       437 ~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~  516 (577)
T KOG0642|consen  437 KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF  516 (577)
T ss_pred             cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence             22333455543322  22233333334444444443332221        11345556667766 46789999999999


Q ss_pred             ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      |..+++++....                                     .|...++++++.|+|.+|++++.||.|++|.
T Consensus       517 dn~~~~~l~s~~-------------------------------------a~~~svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  517 DNKTGKILHSMV-------------------------------------AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             cccccccchhee-------------------------------------eccceecceeecCCCceEEeecCCceeehhh
Confidence            999999887663                                     3344499999999999999999999999999


Q ss_pred             eCCC
Q 010296          451 IESE  454 (513)
Q Consensus       451 ~~~~  454 (513)
                      +...
T Consensus       560 ld~k  563 (577)
T KOG0642|consen  560 LDVK  563 (577)
T ss_pred             ccch
Confidence            8765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=1.8e-19  Score=156.52  Aligned_cols=230  Identities=17%  Similarity=0.249  Sum_probs=176.2

Q ss_pred             CCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCc-------ceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCc
Q 010296          215 RATKQSKHILALAVSS-DGRYLASGGLDRHIHLWDTRIQ-------EHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRT  285 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~  285 (513)
                      ...+|..+|..++|+| +...||+|+.|.+|.||.+..+       +++..+.+|...|.-++|+|.. +.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4679999999999999 5678999999999999998654       3467788999999999999965 56889999999


Q ss_pred             EEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEe-cCC-CCeeEEEeecCCeEEEEe
Q 010296          286 VKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFR-APA-SSLECCCFISNDEFLSGS  362 (513)
Q Consensus       286 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~-~~~-~~v~~~~~~~~~~~~~~~  362 (513)
                      |.+|++.+++.+.++. |...|+++.|+.+| .+++++.|..|+|||.+++..+... .|. .....+.|..++.+++.+
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999888887 99999999999988 5558899999999999999887443 333 344556777777766443


Q ss_pred             ----CCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE
Q 010296          363 ----DDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA  438 (513)
Q Consensus       363 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  438 (513)
                          ++..+-+||..+...-..+.....                                   ...|.---|.++.++++
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~elDt-----------------------------------SnGvl~PFyD~dt~ivY  279 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQELDT-----------------------------------SNGVLLPFYDPDTSIVY  279 (472)
T ss_pred             cccccccceeccCcccccCcceeEEecc-----------------------------------CCceEEeeecCCCCEEE
Confidence                578899999776432222211110                                   01144445667777665


Q ss_pred             -EecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCC
Q 010296          439 -SGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQ  480 (513)
Q Consensus       439 -~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  480 (513)
                       +|-.|+.||.|.+......+..+..+....+-..+.|-|-..
T Consensus       280 l~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRG  322 (472)
T KOG0303|consen  280 LCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG  322 (472)
T ss_pred             EEecCCcceEEEEecCCCceeEEecccccCCcccccccccccc
Confidence             455899999999998855566666666677777888887643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=6.1e-20  Score=160.01  Aligned_cols=266  Identities=17%  Similarity=0.197  Sum_probs=186.8

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ..+..|..|...|++|.|+|+|..||+|+.+|.|.+|....-...   ....+.......+.......+|...|+.++|+
T Consensus        56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws  132 (434)
T KOG1009|consen   56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF---DADTEADLNKEKWVVKKVLRGHRDDIYDLAWS  132 (434)
T ss_pred             EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc---cccchhhhCccceEEEEEecccccchhhhhcc
Confidence            345678899999999999999999999999999999987641110   00000000011122223467899999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee--------
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF--------  301 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------  301 (513)
                      |++.++++++.|..+++||+..|+....+..|...|..++|.|-++++++-+.|...+++.+...+.+....        
T Consensus       133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~  212 (434)
T KOG1009|consen  133 PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKA  212 (434)
T ss_pred             CCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecc
Confidence            999999999999999999999999999999999999999999999999999999877777765543322211        


Q ss_pred             --c---------cc----CCeEEEEeeCCCeEEEEe-----CCCc-----EEEEecCCCeee--EEecCCCCeeEEEee-
Q 010296          302 --G---------HQ----SEVLTIDCLRKERVLTVG-----RDRS-----MQLWKVPEESRL--VFRAPASSLECCCFI-  353 (513)
Q Consensus       302 --~---------~~----~~v~~~~~~~~~~~~~~~-----~d~~-----i~iwd~~~~~~~--~~~~~~~~v~~~~~~-  353 (513)
                        .         |.    .-...++|+|+|.++...     ..+.     .++|+-......  .+.........+.++ 
T Consensus       213 ~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p  292 (434)
T KOG1009|consen  213 FNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP  292 (434)
T ss_pred             cCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence              0         11    123456788888665322     1233     344443321111  222222233333332 


Q ss_pred             -----------------cCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCc
Q 010296          354 -----------------SNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSY  416 (513)
Q Consensus       354 -----------------~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  416 (513)
                                       |-+.+++......|+|||..+..|+....+                                 
T Consensus       293 Vy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n---------------------------------  339 (434)
T KOG1009|consen  293 VYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN---------------------------------  339 (434)
T ss_pred             eEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEee---------------------------------
Confidence                             233334444566799999999999888763                                 


Q ss_pred             CCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          417 HSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       417 ~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                         .|...|+.++|+++|.+|+..|.||...+..+...
T Consensus       340 ---ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  340 ---IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             ---eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence               44556999999999999999999999888887765

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=2.4e-19  Score=171.11  Aligned_cols=259  Identities=15%  Similarity=0.240  Sum_probs=188.2

Q ss_pred             ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCcce--eee
Q 010296          181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRYLASGGLDRHIHLWDTRIQEH--IQA  257 (513)
Q Consensus       181 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~--~~~  257 (513)
                      +.+.||++.........                   ..-...|+|++|+| +..+||.|+.+|.|.+||+..+..  ...
T Consensus       222 ~~~~vW~~~~p~~Pe~~-------------------~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~  282 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELV-------------------LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG  282 (555)
T ss_pred             ceEEEEecCCCCCceEE-------------------EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc
Confidence            47899998876332211                   23466799999999 567888899999999999987765  222


Q ss_pred             ----ccCcCCCeEEEEEecCCCe--EEEEeCCCcEEEEeCCCCce-e-----EEee------cccCCeEEEEeeCC--Ce
Q 010296          258 ----FPGHRGPVSCLTFRQGTSE--LFSGSFDRTVKIWNAEDRAY-I-----STLF------GHQSEVLTIDCLRK--ER  317 (513)
Q Consensus       258 ----~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~-~-----~~~~------~~~~~v~~~~~~~~--~~  317 (513)
                          ...|..+|+.+.|..+...  +++++.||.|..|+++.-.. +     ....      .....++++.|.+.  ..
T Consensus       283 ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~  362 (555)
T KOG1587|consen  283 LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH  362 (555)
T ss_pred             cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce
Confidence                2348899999999765544  99999999999998875332 1     1111      12346788899874  57


Q ss_pred             EEEEeCCCcEEEEecC---CCe------eeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecC-CCCeeEEeecCC
Q 010296          318 VLTVGRDRSMQLWKVP---EES------RLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLL-RKKPVYIVKNAH  385 (513)
Q Consensus       318 ~~~~~~d~~i~iwd~~---~~~------~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~-~~~~~~~~~~~~  385 (513)
                      |++|+..|.|..-+..   ...      ...+..|.++|.++.++|-+.  |++++ |.+++||... ...|+..+..  
T Consensus       363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~--  439 (555)
T KOG1587|consen  363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS--  439 (555)
T ss_pred             EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh--
Confidence            8899999999874332   222      224567788999999999874  44554 9999999987 5666655532  


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCc-ceeeeee
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETK-DIQPLYN  463 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~-~~~~~~~  463 (513)
                                                         +...|++++|||.. ..|+++..+|.|.|||+..... +..... 
T Consensus       440 -----------------------------------~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-  483 (555)
T KOG1587|consen  440 -----------------------------------SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-  483 (555)
T ss_pred             -----------------------------------ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc-
Confidence                                               22339999999976 4778888999999999976522 121111 


Q ss_pred             cCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                       ......+.+.|+++|+.|++| ...|++.+|++..
T Consensus       484 -~~~~~l~~~~~s~~g~~lavG-d~~G~~~~~~l~~  517 (555)
T KOG1587|consen  484 -VCSPALTRVRWSPNGKLLAVG-DANGTTHILKLSE  517 (555)
T ss_pred             -ccccccceeecCCCCcEEEEe-cCCCcEEEEEcCc
Confidence             135667888999999999999 9999999998853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=1.7e-19  Score=152.63  Aligned_cols=239  Identities=15%  Similarity=0.227  Sum_probs=179.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-------e-----eeecc-CcCCCeEEEEEe-------cCCCeEEEEeC
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQE-------H-----IQAFP-GHRGPVSCLTFR-------QGTSELFSGSF  282 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-------~-----~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~~  282 (513)
                      ...+.|+|||..|++-+.|..+.+|++...-       .     ...++ .....|...+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            4568999999999999999999999975321       0     01111 123456667774       67788999999


Q ss_pred             CCcEEEEeCCCCceeEEeec--ccC---CeEEEEeeCCCeEEEEeCCCcEEEEecC-CCeee---E-----EecCCCCee
Q 010296          283 DRTVKIWNAEDRAYISTLFG--HQS---EVLTIDCLRKERVLTVGRDRSMQLWKVP-EESRL---V-----FRAPASSLE  348 (513)
Q Consensus       283 dg~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~---~-----~~~~~~~v~  348 (513)
                      +.-|++||.-+|+....+.+  |..   ...+++|+|+|..+.++....|++||+. .+...   .     ..+..+-+.
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            99999999999987666543  333   4578999999999999999999999993 33221   1     123356678


Q ss_pred             EEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEE
Q 010296          349 CCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS  426 (513)
Q Consensus       349 ~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~  426 (513)
                      |++|+|..  .+++|+...++-||.-..+.++..+                                     .+|.+.|+
T Consensus       212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-------------------------------------ggh~gGvT  254 (406)
T KOG2919|consen  212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-------------------------------------GGHGGGVT  254 (406)
T ss_pred             eeeccCCCCcceeeecccceeeeEecCCCCceeee-------------------------------------cccCCCee
Confidence            89999976  3889999999999999899998887                                     44555599


Q ss_pred             EEEEecCCCEEEEec-CCCcEEEEEeCCCCcceeeeeecCc-ccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          427 SVTVCGGSDLAASGA-GNGSVRLWAIESETKDIQPLYNLPL-VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       427 ~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      .++|+++|+.|++|+ .+-.|..||++.-..++-.+..... ...-.-....|++++|++| +.||.|++||...
T Consensus       255 hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG-~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  255 HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASG-DTDGSVRVWDLKD  328 (406)
T ss_pred             eEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeecc-CCCccEEEEecCC
Confidence            999999999999997 4678999999876555444443111 1222224556899999999 9999999999876

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=2e-17  Score=161.79  Aligned_cols=287  Identities=31%  Similarity=0.498  Sum_probs=222.2

Q ss_pred             ccchhhhhccCCCeEEEEECCCCCeEEEEeC-CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASK-DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      ......+..|...|.+++|+|++.++++++. ++.+++|++..+..+..+                   .+|...|.+++
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~v~~~~  205 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL-------------------AGHTDPVSSLA  205 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEee-------------------ccCCCceEEEE
Confidence            5666778899999999999999999998885 999999999986655533                   45899999999


Q ss_pred             EcCCCC-EEEEEeCCCcEEEEeCCCcceee-eccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce-eEEeeccc
Q 010296          228 VSSDGR-YLASGGLDRHIHLWDTRIQEHIQ-AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY-ISTLFGHQ  304 (513)
Q Consensus       228 ~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~  304 (513)
                      |+|++. .+++++.|+.|++||...+..+. .+.+|...+ ...|+|++.++++++.|+.+++|++..... +..+..|.
T Consensus       206 ~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  284 (466)
T COG2319         206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS  284 (466)
T ss_pred             EcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCC
Confidence            999998 55555899999999988888887 688888876 448999998899999999999999987664 44446788


Q ss_pred             CCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEe---cCCCCeeEEEeecC-CeEEEE-eCCCCEEEEecCCCCee
Q 010296          305 SEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFR---APASSLECCCFISN-DEFLSG-SDDGSIELWSLLRKKPV  378 (513)
Q Consensus       305 ~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~-~~~~~~-~~dg~i~iwd~~~~~~~  378 (513)
                      ..+.++.|.|++ .+++++.++.+.+|++.........   .+...+..+.+.++ ..++.+ ..++.+.+|++......
T Consensus       285 ~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  364 (466)
T COG2319         285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL  364 (466)
T ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCcee
Confidence            899999999954 6667788888999998877655332   45556888888333 245544 67899999999887722


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE-ecCCCcEEEEEeCCCCcc
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS-GAGNGSVRLWAIESETKD  457 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-g~~dg~v~vwd~~~~~~~  457 (513)
                      ......                                      ..+..+.+++ ...++. +..++.+.+|+.....  
T Consensus       365 ~~~~~~--------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--  403 (466)
T COG2319         365 KTLEGH--------------------------------------SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS--  403 (466)
T ss_pred             EEecCC--------------------------------------ceEEEEEECC-CCCEEEEecCCCceEEEecccCe--
Confidence            222111                                      1177888888 544444 6889999999998862  


Q ss_pred             eeeeeecCcc-cEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          458 IQPLYNLPLV-GFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       458 ~~~~~~~~~~-~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                        ........ ..+....+++++.+++.+ +.++.+++|+...
T Consensus       404 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  443 (466)
T COG2319         404 --LLRNLDGHTSRVTSLDFSPDGKSLASG-SSDNTIRLWDLKT  443 (466)
T ss_pred             --eeeeccCCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeccC
Confidence              11111122 789999999999999987 8899999998876

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.7e-18  Score=165.58  Aligned_cols=293  Identities=16%  Similarity=0.252  Sum_probs=202.6

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      ..|+-.++|.++||+++++|+|..||.|.+|.--......               .....+.-|...|++++|+++|.+|
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~---------------~t~t~lHWH~~~V~~L~fS~~G~~L  266 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS---------------ETCTLLHWHHDEVNSLSFSSDGAYL  266 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEecccccccc---------------ccceEEEecccccceeEEecCCceE
Confidence            4578889999999999999999999999999744311100               0111345688899999999999999


Q ss_pred             EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec-----------cc
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG-----------HQ  304 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~  304 (513)
                      ++|+..|.+.+|.+.+++ .+-++.-.++|..+.++|++.+.+....|+.|.+....+.....++.+           ..
T Consensus       267 lSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~  345 (792)
T KOG1963|consen  267 LSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQ  345 (792)
T ss_pred             eecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccc
Confidence            999999999999999998 566777889999999999999999999999999998866544333322           23


Q ss_pred             CCeEEEEeeC-CCeEEEEeCCCcEEEEecCCCeeeEE------ecC------CCCeeEEEeecCCeEE-EEe--------
Q 010296          305 SEVLTIDCLR-KERVLTVGRDRSMQLWKVPEESRLVF------RAP------ASSLECCCFISNDEFL-SGS--------  362 (513)
Q Consensus       305 ~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~~------~~~------~~~v~~~~~~~~~~~~-~~~--------  362 (513)
                      +-.+.+++.| .+.++..+..+.|.+||+-+...+..      ..+      .-.++.++.+..|.++ +.-        
T Consensus       346 ~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~  425 (792)
T KOG1963|consen  346 SLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNF  425 (792)
T ss_pred             ccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhc
Confidence            3456778888 56778889999999999987655411      111      1234455555555432 321        


Q ss_pred             CC--CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe-cCCC-EEE
Q 010296          363 DD--GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC-GGSD-LAA  438 (513)
Q Consensus       363 ~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~-~l~  438 (513)
                      .|  -.+++|-......-..+...-                                ...|...+...++. +... .++
T Consensus       426 ~~~e~~LKFW~~n~~~kt~~L~T~I--------------------------------~~PH~~~~vat~~~~~~rs~~~v  473 (792)
T KOG1963|consen  426 FDGEVSLKFWQYNPNSKTFILNTKI--------------------------------NNPHGNAFVATIFLNPTRSVRCV  473 (792)
T ss_pred             cCceEEEEEEEEcCCcceeEEEEEE--------------------------------ecCCCceeEEEEEecCcccceeE
Confidence            22  245667655433222222100                                02222223344433 3333 899


Q ss_pred             EecCCCcEEEEEeCCCC------cce--eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          439 SGAGNGSVRLWAIESET------KDI--QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       439 ~g~~dg~v~vwd~~~~~------~~~--~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      +++.||.++||-+....      ...  ..+..+ |..++++++|+.||..|+++  .+++|.+||..+
T Consensus       474 ta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i~a~~fs~dGslla~s--~~~~Itiwd~~~  539 (792)
T KOG1963|consen  474 TASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPITALCFSQDGSLLAVS--FDDTITIWDYDT  539 (792)
T ss_pred             EeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcccchhhcCCCcEEEEe--cCCEEEEecCCC
Confidence            99999999999994431      111  122222 68899999999999877666  677999999877

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.4e-19  Score=154.41  Aligned_cols=258  Identities=18%  Similarity=0.319  Sum_probs=186.1

Q ss_pred             eccccCCCcccchhhhhccCCCeEEEEECC--CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCC
Q 010296          140 ASRVQKPEATDEFRVLLKHRQSVTAVALSE--DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT  217 (513)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (513)
                      ..++++....+.+..+++|...++.+.|..  ....+.+|+.||+|++||+........+                 ...
T Consensus        51 sv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~-----------------~~~  113 (376)
T KOG1188|consen   51 SVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI-----------------SWT  113 (376)
T ss_pred             eEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe-----------------ecc
Confidence            345667777888999999999999999987  4667889999999999999987766544                 223


Q ss_pred             CCc-ccEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCcce-eeec-cCcCCCeEEEEEecCC-CeEEEEeCCCcEEEE
Q 010296          218 KQS-KHILALAVSSDGRYLASGGL----DRHIHLWDTRIQEH-IQAF-PGHRGPVSCLTFRQGT-SELFSGSFDRTVKIW  289 (513)
Q Consensus       218 ~~~-~~v~~~~~s~~~~~l~s~~~----dg~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw  289 (513)
                      .+. .+..|++....++.+++|+.    +-.|.+||++..+. +..+ ..|...|++++|+|.. +.|++|+.||.|.||
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf  193 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF  193 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence            333 56778888778888888863    57899999987765 5544 4599999999999965 578899999999999


Q ss_pred             eCCCCc----eeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeEEecCC--------------CCeeE
Q 010296          290 NAEDRA----YISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFRAPA--------------SSLEC  349 (513)
Q Consensus       290 d~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~  349 (513)
                      |+....    ++.++ .+...|.++.|..++  ++.+.+...+..+|++..+.........              .-|. 
T Consensus       194 D~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-  271 (376)
T KOG1188|consen  194 DTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-  271 (376)
T ss_pred             ecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-
Confidence            997642    23333 477789999999988  8889999999999999877644221111              0111 


Q ss_pred             EEeecCC--eEEEEeC-CCCEEEEecCC---C---CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCC
Q 010296          350 CCFISND--EFLSGSD-DGSIELWSLLR---K---KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSS  420 (513)
Q Consensus       350 ~~~~~~~--~~~~~~~-dg~i~iwd~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  420 (513)
                       +.+|.+  .++.++. -+...++-+..   +   +.+..+.                                    .+
T Consensus       272 -~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~------------------------------------g~  314 (376)
T KOG1188|consen  272 -EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ------------------------------------GG  314 (376)
T ss_pred             -cccCCCcceEEEeccccCceeEEEeeecccccccCcccccc------------------------------------CC
Confidence             122332  3443333 55555554432   1   1122222                                    33


Q ss_pred             CcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296          421 AYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       421 ~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~  453 (513)
                      |...|.++.|...+.+++||+.||.|.+|....
T Consensus       315 ~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  315 HEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             cHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence            445588888988889999999999999999643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.83  E-value=2.9e-19  Score=161.12  Aligned_cols=265  Identities=14%  Similarity=0.178  Sum_probs=186.9

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      .|..-|.|+.|+.+...+++++.+..+.-|++.+........+.. .+.          ..-|..+- +..=-.....|+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~d-f~p----------t~~h~~~r-s~~~g~~~d~~~   79 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDD-FVP----------TDMHLGGR-SSGGGKGSDTLL   79 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcc-cCC----------cccccccc-ccCCCCCcceEE
Confidence            467777899999888777666655555555554433221111110 000          00110000 000001234688


Q ss_pred             EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE  316 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  316 (513)
                      .++.||.+.+.+ +.++.-..+..|.+.+.+-.|+|+|.-|++++.||.|++|.- +|..-.++.....+|+|++|.|+.
T Consensus        80 i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S  157 (737)
T KOG1524|consen   80 ICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNS  157 (737)
T ss_pred             EEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCC
Confidence            888999999988 567888888999999999999999999999999999999984 555445555577789999999987


Q ss_pred             eEEEEeCCCcEEEEecCCCe-eeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296          317 RVLTVGRDRSMQLWKVPEES-RLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF  394 (513)
Q Consensus       317 ~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
                      .-+.-+..+.+.+=.+..+. .+....|.+-|.++.|++... +++|+.|-..+|||.. |.+++.-             
T Consensus       158 ~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S-------------  223 (737)
T KOG1524|consen  158 NSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTS-------------  223 (737)
T ss_pred             CceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccC-------------
Confidence            65555566777777776544 457889999999999999876 7799999999999954 4444332             


Q ss_pred             ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEE
Q 010296          395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLA  474 (513)
Q Consensus       395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~  474 (513)
                                              ..|..+|++++|.|+ +.++.++.+ ++|              ...+..+.|..++
T Consensus       224 ------------------------~~~ey~ITSva~npd-~~~~v~S~n-t~R--------------~~~p~~GSifnls  263 (737)
T KOG1524|consen  224 ------------------------AAEEYAITSVAFNPE-KDYLLWSYN-TAR--------------FSSPRVGSIFNLS  263 (737)
T ss_pred             ------------------------Chhccceeeeeeccc-cceeeeeee-eee--------------ecCCCccceEEEE
Confidence                                    455666999999999 677777654 444              1223567899999


Q ss_pred             eecCCCEEEEEecCC
Q 010296          475 FAKSGQFLIAGVGQE  489 (513)
Q Consensus       475 ~sp~~~~l~~~~~~d  489 (513)
                      |||||..+++|++..
T Consensus       264 WS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  264 WSADGTQATCGTSTG  278 (737)
T ss_pred             EcCCCceeeccccCc
Confidence            999999999985543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.2e-18  Score=169.20  Aligned_cols=296  Identities=17%  Similarity=0.250  Sum_probs=211.4

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC--CC
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS--DG  232 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~  232 (513)
                      +.+..++-..+.|+|-...++++...-.|+|||.+.++.+..+...                ......|+.+.+-.  |.
T Consensus      1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~----------------~~~~t~Vs~l~liNe~D~ 1123 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG----------------AFPDTRVSDLELINEQDD 1123 (1387)
T ss_pred             HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCC----------------CCCCCccceeeeecccch
Confidence            3445557788899999999999998889999999998876654211                12345688898876  55


Q ss_pred             CEEEEEeCCCcEEEEeCCC-----cceeeeccC-------cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296          233 RYLASGGLDRHIHLWDTRI-----QEHIQAFPG-------HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      .++++|+.||.|+||+-..     .+.+..+.+       ..+.-.-+.|.....+|++++.-..|+|||......+..+
T Consensus      1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred             hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence            6899999999999997322     233332221       1111134577777777888777899999999988777665


Q ss_pred             e-cccCCeEEEEeeC-C-CeEEEEeCCCcEEEEecCCCee----eEEecCCCC--eeEEEeecCCe--EEEEeCCCCEEE
Q 010296          301 F-GHQSEVLTIDCLR-K-ERVLTVGRDRSMQLWKVPEESR----LVFRAPASS--LECCCFISNDE--FLSGSDDGSIEL  369 (513)
Q Consensus       301 ~-~~~~~v~~~~~~~-~-~~~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~--v~~~~~~~~~~--~~~~~~dg~i~i  369 (513)
                      . +....|+++.... . +.+++|..||.|++||.+....    ...+.|...  |..+.+.++|.  +++|+.+|.|++
T Consensus      1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred             ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence            4 3344566666543 3 4666888999999999986543    256667666  89999988774  999999999999


Q ss_pred             EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296          370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW  449 (513)
Q Consensus       370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw  449 (513)
                      ||++.......+.....                                -...+.++++..++...++|+|+. +.|+||
T Consensus      1284 ~DlR~~~~e~~~~iv~~--------------------------------~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTIVAH--------------------------------WEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred             EecccCcccccceeeec--------------------------------cccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence            99988521111110000                                000113899999999999999998 899999


Q ss_pred             EeCCCCcceeeeeec-----CcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          450 AIESETKDIQPLYNL-----PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       450 d~~~~~~~~~~~~~~-----~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      ++...  .+..+...     ...+.+.|++|+|-.-+||+| ..|.+|.||...+...
T Consensus      1331 ~~~G~--~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG-~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1331 SLSGE--QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG-SADSTVSIYSCEKPRL 1385 (1387)
T ss_pred             ecChh--hhcccccCcccccCcCCCcceeeecchhHhhhhc-cCCceEEEeecCCcCC
Confidence            99764  22222211     235678999999998888888 9999999998876643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=5.7e-18  Score=161.99  Aligned_cols=327  Identities=19%  Similarity=0.249  Sum_probs=233.2

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCC---CeEEEEeCCceEEEEeCCCCccccccCCCh------------------
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDD---SKGFSASKDGSILHWDVSSGKGVKYLWPSE------------------  201 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~---~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~------------------  201 (513)
                      ++......+++.+..|..+++.+.+.|..   .++++++.+|.|++||...+..+.++....                  
T Consensus        41 VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~  120 (792)
T KOG1963|consen   41 VYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANV  120 (792)
T ss_pred             EEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCcccee
Confidence            45667788899999999999999998865   467799999999999998776655331000                  


Q ss_pred             ----------------------------------hhhccC---------CC-----------------------CCCCCC
Q 010296          202 ----------------------------------EVLKSH---------GA-----------------------KDPQGR  215 (513)
Q Consensus       202 ----------------------------------~~~~~~---------~~-----------------------~~~~~~  215 (513)
                                                        ..+...         ..                       ......
T Consensus       121 ~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~  200 (792)
T KOG1963|consen  121 YVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDI  200 (792)
T ss_pred             EeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchh
Confidence                                              000000         00                       001112


Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--c--ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeC
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI--Q--EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNA  291 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  291 (513)
                      ...|...++|.++||+++++|+|..||.|.+|.--.  +  .....+.=|...|++++|+++|.+|++|+..|.+.+|.+
T Consensus       201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL  280 (792)
T ss_pred             hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence            345667789999999999999999999999996322  1  234556668899999999999999999999999999999


Q ss_pred             CCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeE------------EecCCCCeeEEEeec-CCe
Q 010296          292 EDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLV------------FRAPASSLECCCFIS-NDE  357 (513)
Q Consensus       292 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~------------~~~~~~~v~~~~~~~-~~~  357 (513)
                      .+++ .+-+..-.++|..+.++|++.+. .+..|+.|.+..+.+.....            ......-.+.+++.| .+.
T Consensus       281 ~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  281 ETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             cCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence            9988 44556678899999999998655 67789999999875543321            111234456778888 456


Q ss_pred             EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE
Q 010296          358 FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA  437 (513)
Q Consensus       358 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  437 (513)
                      ++..+..|.|.+||+.+...++.+.......                  .++.        ..+...++.++.+..|.++
T Consensus       360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~------------------~~~~--------~n~~v~itav~~~~~gs~m  413 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENY------------------SDGD--------VNIQVGITAVARSRFGSWM  413 (792)
T ss_pred             eeecCCCceEEEEeccccceeeeEEEEeecc------------------cCCc--------ceeEEeeeeehhhccceEE
Confidence            8889999999999999988877765432210                  0000        1233448888888889999


Q ss_pred             EEec--------CC--CcEEEEEeCCCCcceee--eeecCcccEEEEEEeecC-CC-EEEEEecCCCccccccc
Q 010296          438 ASGA--------GN--GSVRLWAIESETKDIQP--LYNLPLVGFVNSLAFAKS-GQ-FLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       438 ~~g~--------~d--g~v~vwd~~~~~~~~~~--~~~~~~~~~v~~v~~sp~-~~-~l~~~~~~dg~v~~W~~  497 (513)
                      +|.-        .|  -.+++|......+....  ....||...+...+|.+. .. .++++ +.||.+++|-.
T Consensus       414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta-~~dg~~KiW~~  486 (792)
T KOG1963|consen  414 ATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA-SVDGDFKIWVF  486 (792)
T ss_pred             EEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe-ccCCeEEEEEE
Confidence            9873        22  36899998876444333  334567666665555543 33 56666 99999999977

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.2e-19  Score=161.69  Aligned_cols=305  Identities=16%  Similarity=0.182  Sum_probs=223.3

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      .....|..|.+.|+.|.|+..|..|++|+.|..|.+||+..+.....+                  ..+|...|....|-
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKFi  194 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKFI  194 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc------------------ccccccchhhhhcc
Confidence            344567899999999999999999999999999999999988877654                  46888889888998


Q ss_pred             CC--CCEEEEEeCCCcEEEEeCCC-cce--eeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeEEe---
Q 010296          230 SD--GRYLASGGLDRHIHLWDTRI-QEH--IQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYISTL---  300 (513)
Q Consensus       230 ~~--~~~l~s~~~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~---  300 (513)
                      |.  ...+++++.||.|++=.+.. +.+  ...+..|.++|.-++.-|+..+ |++++.|+.+.-+|+++......+   
T Consensus       195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr  274 (559)
T KOG1334|consen  195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR  274 (559)
T ss_pred             CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee
Confidence            84  45799999999999887643 332  3445569999999999997755 889999999999999987654333   


Q ss_pred             ecccC---CeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee-------EE------ecCCCCeeEEEeecCC-eEEEE
Q 010296          301 FGHQS---EVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL-------VF------RAPASSLECCCFISND-EFLSG  361 (513)
Q Consensus       301 ~~~~~---~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-------~~------~~~~~~v~~~~~~~~~-~~~~~  361 (513)
                      ..+..   ...+++..|.+  .+++++.|..+++||.+.-...       .+      ......|+|++++.++ .++++
T Consensus       275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS  354 (559)
T KOG1334|consen  275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS  354 (559)
T ss_pred             ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence            22333   45778888843  6779999999999998653221       11      1234578999999665 58888


Q ss_pred             eCCCCEEEEecCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE-ecCCCEEE
Q 010296          362 SDDGSIELWSLLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV-CGGSDLAA  438 (513)
Q Consensus       362 ~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~  438 (513)
                      ..|-.|+++.-..+.-  .......                        ..+....|........|..+-| -|...|++
T Consensus       355 YnDe~IYLF~~~~~~G~~p~~~s~~------------------------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVv  410 (559)
T KOG1334|consen  355 YNDEDIYLFNKSMGDGSEPDPSSPR------------------------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVV  410 (559)
T ss_pred             ecccceEEeccccccCCCCCCCcch------------------------hhccchhhcccccccccceeeeccCccceEE
Confidence            8888899984332211  0000000                        0001111222333344777765 56788999


Q ss_pred             EecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          439 SGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       439 ~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      +|+.-|.|.||+-.++ +.+..+..-  ...|+||.-+|--+.||++ |-|.-|+||.....
T Consensus       411 SGSDCGhIFiW~K~t~-eii~~MegD--r~VVNCLEpHP~~PvLAsS-Gid~DVKIWTP~~~  468 (559)
T KOG1334|consen  411 SGSDCGHIFIWDKKTG-EIIRFMEGD--RHVVNCLEPHPHLPVLASS-GIDHDVKIWTPLTA  468 (559)
T ss_pred             ecCccceEEEEecchh-HHHHHhhcc--cceEeccCCCCCCchhhcc-CCccceeeecCCcc
Confidence            9999999999998887 556656553  3389999999999999999 99999999976443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=1.4e-18  Score=144.88  Aligned_cols=207  Identities=20%  Similarity=0.277  Sum_probs=162.6

Q ss_pred             chhhhh-ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccc-cccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          151 EFRVLL-KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGV-KYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       151 ~~~~~~-~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ++..|. .|-+.|.|+.|.|++..|++-. |..|.+|++..+..+ ..+..       .       ....|....++-+|
T Consensus       114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s-------s-------~s~e~~~~ftsg~W  178 (370)
T KOG1007|consen  114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS-------S-------ESAEMRHSFTSGAW  178 (370)
T ss_pred             HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc-------c-------ccccccceeccccc
Confidence            344444 5667999999999999998776 789999999987763 22210       0       11235667888999


Q ss_pred             cC--CCCEEEEEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCC-CceeEEeecc
Q 010296          229 SS--DGRYLASGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAED-RAYISTLFGH  303 (513)
Q Consensus       229 s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~-~~~~~~~~~~  303 (513)
                      +|  +++.+++.+ ++++..||+++......+. .|...|..+.|+|+.++ |++|+.||.|+|||.+. ..++..+.+|
T Consensus       179 spHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H  257 (370)
T KOG1007|consen  179 SPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH  257 (370)
T ss_pred             CCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC
Confidence            99  788887766 8999999999888776664 58889999999998765 77999999999999986 4568889999


Q ss_pred             cCCeEEEEeeC--CCeEEEEeCCCcEEEEecCCC------------------------------eeeEEecCCCCeeEEE
Q 010296          304 QSEVLTIDCLR--KERVLTVGRDRSMQLWKVPEE------------------------------SRLVFRAPASSLECCC  351 (513)
Q Consensus       304 ~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~------------------------------~~~~~~~~~~~v~~~~  351 (513)
                      ...|+++.|+|  +..+++++.|..|.+|....-                              ....+..|...|.+++
T Consensus       258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~a  337 (370)
T KOG1007|consen  258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALA  337 (370)
T ss_pred             ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEe
Confidence            99999999999  456679999999999975321                              1113556788999999


Q ss_pred             eecCC--eEEEEeCCCCEEEEecC
Q 010296          352 FISND--EFLSGSDDGSIELWSLL  373 (513)
Q Consensus       352 ~~~~~--~~~~~~~dg~i~iwd~~  373 (513)
                      |+.-.  .|++-+.||.+.|=.+.
T Consensus       338 WSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  338 WSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             eccCCCeeEEEeccCceEEeecCC
Confidence            99876  48899999999886654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=6.3e-17  Score=131.83  Aligned_cols=209  Identities=18%  Similarity=0.278  Sum_probs=157.6

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCcc---ccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKG---VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      ++-..++|.++|+.++|+  ..+|++|+ ||.|+=|.......   .+.+|..         ..|...-...--.|+++.
T Consensus        54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~---------~~P~~~~~~evPeINam~  121 (325)
T KOG0649|consen   54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEV---------KIPMQVDAVEVPEINAMW  121 (325)
T ss_pred             ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhh---------cCccccCcccCCccceeE
Confidence            344458999999999998  35677776 59999998765432   1112211         111111122234589999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeeccc---
Q 010296          228 VSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQ---  304 (513)
Q Consensus       228 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---  304 (513)
                      +.|..+-++.++.|+.++-||+++|+..+.+++|+..|.++.-......+++|+.||++++||+++++++.++....   
T Consensus       122 ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~  201 (325)
T KOG0649|consen  122 LDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN  201 (325)
T ss_pred             eccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChh
Confidence            99987777777789999999999999999999999999999996666789999999999999999999988774321   


Q ss_pred             -------CCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCC
Q 010296          305 -------SEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLR  374 (513)
Q Consensus       305 -------~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~  374 (513)
                             ..|.+++.  +...++|+....+.+|.++.........-...+..+.|..+ .+++++..+.|.-|.+..
T Consensus       202 ~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  202 LLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             hcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeeeeecc
Confidence                   12344443  45677888888999999999888877777778888877654 567777788888888643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.80  E-value=1.2e-17  Score=159.57  Aligned_cols=247  Identities=18%  Similarity=0.261  Sum_probs=178.7

Q ss_pred             ccCCCeEEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC--C
Q 010296          157 KHRQSVTAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG--R  233 (513)
Q Consensus       157 ~h~~~V~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~  233 (513)
                      .-...|+|+.|+|. ..+|+.|+.+|.|.+||+..+......             ........|..+|+.+.|..+.  .
T Consensus       240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~sh~~~v~~vvW~~~~~~~  306 (555)
T KOG1587|consen  240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEVSHSEPVTAVVWLQNEHNT  306 (555)
T ss_pred             ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------ccccccccCCcCeEEEEEeccCCCC
Confidence            45788999999995 566778889999999999887652100             0111345789999999997754  4


Q ss_pred             EEEEEeCCCcEEEEeCCCcce-e-----eecc------CcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCc-----
Q 010296          234 YLASGGLDRHIHLWDTRIQEH-I-----QAFP------GHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRA-----  295 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~~-~-----~~~~------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-----  295 (513)
                      -|++++.||.|..|+++.-.. +     ....      .....+++++|.+.. ..++.|+..|.|..-+-...+     
T Consensus       307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~  386 (555)
T KOG1587|consen  307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV  386 (555)
T ss_pred             ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc
Confidence            499999999999998764322 1     1111      123468899998754 568899999998874433221     


Q ss_pred             ---eeEEeecccCCeEEEEeeCCC-e-EEEEeCCCcEEEEecC-CCeee-EEecCCCCeeEEEeecCC--eEEEEeCCCC
Q 010296          296 ---YISTLFGHQSEVLTIDCLRKE-R-VLTVGRDRSMQLWKVP-EESRL-VFRAPASSLECCCFISND--EFLSGSDDGS  366 (513)
Q Consensus       296 ---~~~~~~~~~~~v~~~~~~~~~-~-~~~~~~d~~i~iwd~~-~~~~~-~~~~~~~~v~~~~~~~~~--~~~~~~~dg~  366 (513)
                         ....+..|.++|+++.++|=. . |++++ |-+++||... ...++ .+..+...+++++|+|..  .|+++..+|.
T Consensus       387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~  465 (555)
T KOG1587|consen  387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN  465 (555)
T ss_pred             cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence               133456688999999999943 4 44555 9999999987 44444 455556669999999986  4889999999


Q ss_pred             EEEEecCCC--CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC
Q 010296          367 IELWSLLRK--KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG  444 (513)
Q Consensus       367 i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg  444 (513)
                      |.|||+...  .|+......                                     ....+.+.|++.|++|++|...|
T Consensus       466 l~iWDLl~~~~~Pv~s~~~~-------------------------------------~~~l~~~~~s~~g~~lavGd~~G  508 (555)
T KOG1587|consen  466 LDIWDLLQDDEEPVLSQKVC-------------------------------------SPALTRVRWSPNGKLLAVGDANG  508 (555)
T ss_pred             eehhhhhccccCCccccccc-------------------------------------ccccceeecCCCCcEEEEecCCC
Confidence            999999754  344333222                                     22378888999999999999999


Q ss_pred             cEEEEEeCCC
Q 010296          445 SVRLWAIESE  454 (513)
Q Consensus       445 ~v~vwd~~~~  454 (513)
                      .+.+|++...
T Consensus       509 ~~~~~~l~~~  518 (555)
T KOG1587|consen  509 TTHILKLSES  518 (555)
T ss_pred             cEEEEEcCch
Confidence            9999999653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.1e-18  Score=157.75  Aligned_cols=165  Identities=18%  Similarity=0.231  Sum_probs=132.5

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      .-..|.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.++.+                  .++|...|.++.|-|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI------------------~TgHtaNIFsvKFvP  103 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI------------------STGHTANIFSVKFVP  103 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee------------------ecccccceeEEeeec
Confidence            34578899999999999999999999999999999999877777654                  579999999999999


Q ss_pred             --CCCEEEEEeCCCcEEEEeCCC----------cceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCce-
Q 010296          231 --DGRYLASGGLDRHIHLWDTRI----------QEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAY-  296 (513)
Q Consensus       231 --~~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-  296 (513)
                        +.+.+++|..|..|+++|+..          ...+..+..|...|..|+..|++ +.+.+++.||+|+-||++.... 
T Consensus       104 ~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c  183 (758)
T KOG1310|consen  104 YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC  183 (758)
T ss_pred             cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence              567899999999999999974          23455667799999999999998 6688999999999999986321 


Q ss_pred             ---------eEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecC
Q 010296          297 ---------ISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVP  333 (513)
Q Consensus       297 ---------~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~  333 (513)
                               +..+....-...|+..+|..  .|++|+.+-..++||.+
T Consensus       184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence                     11111222345677777743  56678888888888854

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.79  E-value=7.8e-17  Score=134.72  Aligned_cols=271  Identities=17%  Similarity=0.264  Sum_probs=192.5

Q ss_pred             CCeEEEEECC--C-CCeEEEEeC----CceEEEEeCC--CCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          160 QSVTAVALSE--D-DSKGFSASK----DGSILHWDVS--SGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       160 ~~V~~~~~s~--~-~~~l~t~~~----dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      -+++++.|+.  + +-+||.|+.    .+.|.|-.+.  +++.+..                  ....|.-+++.+.|.|
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~YP~tK~~wiP  106 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHPYPVTKLMWIP  106 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCCCCccceEecC
Confidence            4688899984  2 456787773    4566665554  2222211                  1257889999999999


Q ss_pred             CC-----CEEEEEeCCCcEEEEeCCCc--ce--eee-----ccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCCc
Q 010296          231 DG-----RYLASGGLDRHIHLWDTRIQ--EH--IQA-----FPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       231 ~~-----~~l~s~~~dg~i~vwd~~~~--~~--~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      +.     .+||+++  -.+++|.+...  +.  ...     -..+.++++++.|+. +-++|.+++-|-+..|||+.++.
T Consensus       107 d~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~  184 (364)
T KOG0290|consen  107 DSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV  184 (364)
T ss_pred             CccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc
Confidence            76     3566655  47999998632  21  111     123677899999976 45678899999999999999873


Q ss_pred             e---eEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee--EEecC--CCCeeEEEeecCCe--EEEEe-C
Q 010296          296 Y---ISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL--VFRAP--ASSLECCCFISNDE--FLSGS-D  363 (513)
Q Consensus       296 ~---~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~--~~~~~--~~~v~~~~~~~~~~--~~~~~-~  363 (513)
                      .   ...+-.|...|..++|..++  .|+++|.||.+++||++.....  .+..+  ..+...++|+++.-  +++-. .
T Consensus       185 ~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d  264 (364)
T KOG0290|consen  185 SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD  264 (364)
T ss_pred             ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC
Confidence            3   56677899999999999854  6779999999999999875433  33333  45778888888763  55433 4


Q ss_pred             CCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEec
Q 010296          364 DGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGA  441 (513)
Q Consensus       364 dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~  441 (513)
                      ...|.|.|++.. .++..+                                     ..|.+.|+.++|.|.. ..|++++
T Consensus       265 S~~V~iLDiR~P~tpva~L-------------------------------------~~H~a~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  265 SNKVVILDIRVPCTPVARL-------------------------------------RNHQASVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             CceEEEEEecCCCcceehh-------------------------------------hcCcccccceEecCCCCceeeecC
Confidence            467999999875 344444                                     3455559999999965 6899999


Q ss_pred             CCCcEEEEEeCCCCc--ceeeeeecCcccEEEEEEeecC-CCEEEEEec
Q 010296          442 GNGSVRLWAIESETK--DIQPLYNLPLVGFVNSLAFAKS-GQFLIAGVG  487 (513)
Q Consensus       442 ~dg~v~vwd~~~~~~--~~~~~~~~~~~~~v~~v~~sp~-~~~l~~~~~  487 (513)
                      .|..+.|||+.....  ...++..+...+.|+.+.|+|. ..+++.+.+
T Consensus       308 DD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  308 DDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             CcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence            999999999987532  1223333346788999999964 567777744

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=2e-19  Score=170.13  Aligned_cols=243  Identities=18%  Similarity=0.306  Sum_probs=191.7

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      .+.+|.+.|+|+.|...|.++++|+.|..++||.+.+..++...++|.+.|+.++.+.+..++++++.|..|++|.+.++
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            45789999999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             ceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEE-----ecCCCCeeEEEeecCCe-EEEEeCCCCEE
Q 010296          295 AYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDE-FLSGSDDGSIE  368 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~~~~~~dg~i~  368 (513)
                      .++..+.+|.+.|++++|+|-.   +.+.||++++||.+-......     ......+.++.|-.++. +++++.++.-.
T Consensus       265 ~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~  341 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR  341 (1113)
T ss_pred             chHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence            9999999999999999999854   778899999999982222111     11223455566666664 88999999888


Q ss_pred             EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC-CCEEEEecCCCcEE
Q 010296          369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG-SDLAASGAGNGSVR  447 (513)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g~~dg~v~  447 (513)
                      .|.+.........                                           +.-+.++.+ ..+.+++-.+-.++
T Consensus       342 n~e~~~l~~~~~~-------------------------------------------lif~t~ssd~~~~~~~ar~~~~~~  378 (1113)
T KOG0644|consen  342 NHEFEQLAWRSNL-------------------------------------------LIFVTRSSDLSSIVVTARNDHRLC  378 (1113)
T ss_pred             cchhhHhhhhccc-------------------------------------------eEEEeccccccccceeeeeeeEee
Confidence            8875432211100                                           111111111 14666677788899


Q ss_pred             EEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccceE
Q 010296          448 LWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVL  506 (513)
Q Consensus       448 vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~  506 (513)
                      +|++.++ ...+.+..  |...+..+.++|-+..++...|.||...|||.-.+.+...+
T Consensus       379 vwnl~~g-~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  379 VWNLYTG-QLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY  434 (1113)
T ss_pred             eeecccc-hhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence            9999988 44454544  77889999999999998888899999999999887665444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.79  E-value=5e-17  Score=160.45  Aligned_cols=318  Identities=14%  Similarity=0.122  Sum_probs=206.7

Q ss_pred             ccchhhhhccCCCeEEEEECCCC-CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDD-SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      +..+..+..|...|..++.++.. .+++|||.||+|++|++..........            ....++......+.++.
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~------------rS~ltys~~~sr~~~vt 1105 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA------------RSELTYSPEGSRVEKVT 1105 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCccee------------eeeEEEeccCCceEEEE
Confidence            45667788899999999998865 999999999999999987533221000            00011222467799999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCcc-------eeeeccCc-CCCe-EEEEEecC-C-CeEEEEeCCCcEEEEeCCCCce
Q 010296          228 VSSDGRYLASGGLDRHIHLWDTRIQE-------HIQAFPGH-RGPV-SCLTFRQG-T-SELFSGSFDRTVKIWNAEDRAY  296 (513)
Q Consensus       228 ~s~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~-~~~v-~~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~  296 (513)
                      +.+.+..+|+++.||.|.+.++....       +......+ .+.+ ..-+|... . ..|+.+...+.|..||+++...
T Consensus      1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred             eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence            99999999999999999999987521       11112222 2223 33344332 2 3677888899999999998766


Q ss_pred             eEEee--cccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeEEe--cCCCCeeEEEeecC---C-e-EEEEe-CCC
Q 010296          297 ISTLF--GHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLVFR--APASSLECCCFISN---D-E-FLSGS-DDG  365 (513)
Q Consensus       297 ~~~~~--~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~---~-~-~~~~~-~dg  365 (513)
                      +..++  ...+.|++++..|.+. +++|...|.+.+||++-+..+...  .+..++..+...|-   . . +.+++ ..+
T Consensus      1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred             HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence            55543  3567899999999765 558888999999999987766333  33455665555442   2 2 33444 678


Q ss_pred             CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc
Q 010296          366 SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS  445 (513)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~  445 (513)
                      .|.+|++.+|.+.+++....... .+....+..                 .....+.-.....++...+.++++|+.|..
T Consensus      1266 evs~wn~~~g~~~~vl~~s~~~p-~ls~~~Ps~-----------------~~~kp~~~~~~~~~~~~~~~~~ltggsd~k 1327 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAP-ILSYALPSN-----------------DARKPDSLAGISCGVCEKNGFLLTGGSDMK 1327 (1431)
T ss_pred             ceeeeecccCcceEEEEcCCCCc-chhhhcccc-----------------cCCCCCcccceeeecccCCceeeecCCccc
Confidence            89999999998877776542211 000000000                 000111122334445555678999999999


Q ss_pred             EEEEEeCCCCcc-eee------------------e----------------------------------eecCcccEEEE
Q 010296          446 VRLWAIESETKD-IQP------------------L----------------------------------YNLPLVGFVNS  472 (513)
Q Consensus       446 v~vwd~~~~~~~-~~~------------------~----------------------------------~~~~~~~~v~~  472 (513)
                      ||.||....... ...                  +                                  ....|..+|++
T Consensus      1328 IR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itd 1407 (1431)
T KOG1240|consen 1328 IRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITD 1407 (1431)
T ss_pred             eeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhh
Confidence            999998654211 000                  0                                  00024567888


Q ss_pred             EEeecCCCEEEEEecCCCcccccc
Q 010296          473 LAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       473 v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      +++....+-|+++++.||.|++|.
T Consensus      1408 ma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1408 MATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhhhccCccEEEEecCCCeeeecC
Confidence            988877666666669999999994

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.78  E-value=1.9e-16  Score=136.92  Aligned_cols=236  Identities=15%  Similarity=0.220  Sum_probs=168.4

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC--CcEEEEeCCCCcee
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD--RTVKIWNAEDRAYI  297 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~  297 (513)
                      ...+..+.|..+...|..|+.+| .++|....-............|--+-|+.  .+++..+.+  +.+++++++.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence            34577788999999999999888 56777664433222222333455555654  456555544  45999999888777


Q ss_pred             EEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEe----cCCCCeeEEEeecCCe-EE--EEeCCCCEEEE
Q 010296          298 STLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFR----APASSLECCCFISNDE-FL--SGSDDGSIELW  370 (513)
Q Consensus       298 ~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~-~~--~~~~dg~i~iw  370 (513)
                      ..+. ....|.++.++.+ +++++-.+ .|+|||++..+.+...    .+...+..+++++.+. ++  .....|.|.||
T Consensus        82 Ce~~-fpt~IL~VrmNr~-RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMNRK-RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             EEEe-cCCceEEEEEccc-eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence            6665 6778899988654 44444443 4999999998877321    2334455555555554 44  34567999999


Q ss_pred             ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc-EEEE
Q 010296          371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS-VRLW  449 (513)
Q Consensus       371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-v~vw  449 (513)
                      |+.+.+++..+.                                     .|.+.+.+++|+++|.+|||+|..|+ |||+
T Consensus       159 d~~nl~~v~~I~-------------------------------------aH~~~lAalafs~~G~llATASeKGTVIRVf  201 (391)
T KOG2110|consen  159 DTINLQPVNTIN-------------------------------------AHKGPLAALAFSPDGTLLATASEKGTVIRVF  201 (391)
T ss_pred             EcccceeeeEEE-------------------------------------ecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence            999999999885                                     44455999999999999999999997 6999


Q ss_pred             EeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          450 AIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       450 d~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      .+.++. .+..+..-.....|.+++|+|++++|+++ |..++|.++.+...
T Consensus       202 ~v~~G~-kl~eFRRG~~~~~IySL~Fs~ds~~L~~s-S~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  202 SVPEGQ-KLYEFRRGTYPVSIYSLSFSPDSQFLAAS-SNTETVHIFKLEKV  250 (391)
T ss_pred             EcCCcc-EeeeeeCCceeeEEEEEEECCCCCeEEEe-cCCCeEEEEEeccc
Confidence            999983 33334332235679999999999999988 88889999977654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=5.3e-16  Score=145.23  Aligned_cols=265  Identities=9%  Similarity=0.134  Sum_probs=166.5

Q ss_pred             cCCCeEEEEECCCCCeEEEEe-CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          158 HRQSVTAVALSEDDSKGFSAS-KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      +.+....++++|++++|++++ .++.|.+|++.....+...       .          ..........++|+|++++|+
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~-------~----------~~~~~~~p~~i~~~~~g~~l~   95 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA-------A----------ESPLPGSPTHISTDHQGRFLF   95 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe-------e----------eecCCCCceEEEECCCCCEEE
Confidence            346678899999999988764 5788999999732111111       0          001122456899999999988


Q ss_pred             EEeC-CCcEEEEeCCCcc----eeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCCCCceeE-------Eeecc
Q 010296          237 SGGL-DRHIHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAEDRAYIS-------TLFGH  303 (513)
Q Consensus       237 s~~~-dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-------~~~~~  303 (513)
                      +++. ++.|.+|++.+..    .+..+. +.....+++++|+++++++++ .++.|.+||+.+...+.       .+. .
T Consensus        96 v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~  173 (330)
T PRK11028         96 SASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-E  173 (330)
T ss_pred             EEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-C
Confidence            8764 7899999986432    223332 334567789999999986554 56999999997633221       111 2


Q ss_pred             cCCeEEEEeeCCCeEE-EEeC-CCcEEEEecCC--Cee--e-EEecC------CCCeeEEEeecCCe-EEEE-eCCCCEE
Q 010296          304 QSEVLTIDCLRKERVL-TVGR-DRSMQLWKVPE--ESR--L-VFRAP------ASSLECCCFISNDE-FLSG-SDDGSIE  368 (513)
Q Consensus       304 ~~~v~~~~~~~~~~~~-~~~~-d~~i~iwd~~~--~~~--~-~~~~~------~~~v~~~~~~~~~~-~~~~-~~dg~i~  368 (513)
                      ......+.|+|+++++ ++.. ++.|.+|++..  +..  . .....      ......+.++|+++ ++++ ..++.|.
T Consensus       174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~  253 (330)
T PRK11028        174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLIS  253 (330)
T ss_pred             CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEE
Confidence            3346789999998655 5544 89999999973  222  1 11111      11223578899987 4444 3578999


Q ss_pred             EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CCcEE
Q 010296          369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NGSVR  447 (513)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~v~  447 (513)
                      +|++........+.....                                .  ......+.|+|+|++|+++.. +++|.
T Consensus       254 v~~i~~~~~~~~~~~~~~--------------------------------~--~~~p~~~~~~~dg~~l~va~~~~~~v~  299 (330)
T PRK11028        254 VFSVSEDGSVLSFEGHQP--------------------------------T--ETQPRGFNIDHSGKYLIAAGQKSHHIS  299 (330)
T ss_pred             EEEEeCCCCeEEEeEEEe--------------------------------c--cccCCceEECCCCCEEEEEEccCCcEE
Confidence            999865432111111000                                0  011457899999999998775 89999


Q ss_pred             EEEeCCCCcceeeeeecCcccEEEEEEe
Q 010296          448 LWAIESETKDIQPLYNLPLVGFVNSLAF  475 (513)
Q Consensus       448 vwd~~~~~~~~~~~~~~~~~~~v~~v~~  475 (513)
                      +|++......+..+..+.......+++|
T Consensus       300 v~~~~~~~g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        300 VYEIDGETGLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             EEEEcCCCCcEEEccccccCCCceEEEE
Confidence            9998654333444433333334455555

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.77  E-value=1.3e-16  Score=135.75  Aligned_cols=309  Identities=12%  Similarity=0.113  Sum_probs=201.0

Q ss_pred             EEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE-eCCC
Q 010296          164 AVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG-GLDR  242 (513)
Q Consensus       164 ~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg  242 (513)
                      -++|||+|+++|+++.- .+.|-|..+.+..+.+                    ..-..|.-+.|..+.-+++++ ..++
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--------------------~cldki~yieW~ads~~ilC~~yk~~   71 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--------------------LCLDKIVYIEWKADSCHILCVAYKDP   71 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--------------------HHHHHhhheeeeccceeeeeeeeccc
Confidence            46899999999999875 7888888877665533                    123457789999988877765 5678


Q ss_pred             cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEE
Q 010296          243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTV  321 (513)
Q Consensus       243 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  321 (513)
                      .|.+|++...+-...+.....++.+++|+|+|+.|+ +...+-.|.+|.+.+.+.... .-....+..++|+|+|++.+.
T Consensus        72 ~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai  150 (447)
T KOG4497|consen   72 KVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAI  150 (447)
T ss_pred             eEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeee
Confidence            999999998888888888889999999999997655 666789999999988765543 223445688899999987754


Q ss_pred             eC--CC-----------------------------------cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeC
Q 010296          322 GR--DR-----------------------------------SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSD  363 (513)
Q Consensus       322 ~~--d~-----------------------------------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~  363 (513)
                      ..  |.                                   .+.+||-.-.-.+......-++..+.|+|.++ +++|+.
T Consensus       151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsy  230 (447)
T KOG4497|consen  151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSY  230 (447)
T ss_pred             eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeecc
Confidence            32  11                                   11222211111111112235678899999776 669999


Q ss_pred             CCCEEEEecCCCCeeEEeecCCCcc------------------cCCCCcccCcCccccccCCCCC----CCCCCc-----
Q 010296          364 DGSIELWSLLRKKPVYIVKNAHPLL------------------DGLKNFEQDEGKISNGHSENGN----LNPGSY-----  416 (513)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~i~~~~~~~~~----~~~~~~-----  416 (513)
                      |+.++|.+--+.++...+-......                  -....+.+.+-....+......    ..+..+     
T Consensus       231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp  310 (447)
T KOG4497|consen  231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP  310 (447)
T ss_pred             chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence            9999998877666554433211100                  0001111111111111110000    000000     


Q ss_pred             --CCCCCcceEEEEEEecCCCEEEEecCC--CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcc
Q 010296          417 --HSSSAYSWVSSVTVCGGSDLAASGAGN--GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRL  492 (513)
Q Consensus       417 --~~~~~~~~i~~~~~s~~~~~l~~g~~d--g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v  492 (513)
                        ........+.-++||+|..+++|-...  +.+.+||++..    +....+....+|....|.|....|+.+.| ..++
T Consensus       311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~piraf~WdP~~prL~vctg-~srL  385 (447)
T KOG4497|consen  311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKHPIRAFEWDPGRPRLVVCTG-KSRL  385 (447)
T ss_pred             CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhccceeEEEeCCCCceEEEEcC-CceE
Confidence              012223457889999999999987643  68999999876    22222235678999999999999998844 4479


Q ss_pred             cccccCC
Q 010296          493 GRWGHLP  499 (513)
Q Consensus       493 ~~W~~~~  499 (513)
                      .+|....
T Consensus       386 Y~W~psg  392 (447)
T KOG4497|consen  386 YFWAPSG  392 (447)
T ss_pred             EEEcCCC
Confidence            9996543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=8.8e-19  Score=155.38  Aligned_cols=263  Identities=13%  Similarity=0.181  Sum_probs=208.6

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      -.-+.+.|+.+|++|+.|+.-|.|-.+|+.++.....+                    .-...|..+.|-.+..+||++-
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AVAQ  189 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAVAQ  189 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHhhh
Confidence            34578999999999999999999999999999877655                    2345688999998888888776


Q ss_pred             CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE
Q 010296          240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL  319 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  319 (513)
                       ...++||| ..|..++.++.| ..|..+.|.|..-+|++++..|.++--|+.+|+.+..+....+.+..+.-+|-+-++
T Consensus       190 -K~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVi  266 (545)
T KOG1272|consen  190 -KKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVI  266 (545)
T ss_pred             -hceEEEec-CCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceE
Confidence             57899999 567888888855 578999999998889999999999999999999999998888899999999977666


Q ss_pred             -EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCccc
Q 010296          320 -TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQ  396 (513)
Q Consensus       320 -~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  396 (513)
                       +|...|+|.+|.......+ .+..|.++|.++++.++|+ +++.+.|..++|||+++...+.++...++          
T Consensus       267 h~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~----------  336 (545)
T KOG1272|consen  267 HLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP----------  336 (545)
T ss_pred             EEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCC----------
Confidence             8889999999999887766 6788999999999999997 77999999999999999877666654333          


Q ss_pred             CcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC-C-cceeeeeecCcccEEEEEE
Q 010296          397 DEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE-T-KDIQPLYNLPLVGFVNSLA  474 (513)
Q Consensus       397 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~-~-~~~~~~~~~~~~~~v~~v~  474 (513)
                                                  ...++||..| +||.+-.+ .|.||.=... . ..-.+.......++|..+.
T Consensus       337 ----------------------------a~~ls~Sqkg-lLA~~~G~-~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~  386 (545)
T KOG1272|consen  337 ----------------------------ASNLSLSQKG-LLALSYGD-HVQIWKDALKGSGHGETPYMNHRCGGPVEDLR  386 (545)
T ss_pred             ----------------------------cccccccccc-ceeeecCC-eeeeehhhhcCCCCCCcchhhhccCcccccce
Confidence                                        6778888765 45544444 7999963222 1 1111222212356899999


Q ss_pred             eecCCCEEEEE
Q 010296          475 FAKSGQFLIAG  485 (513)
Q Consensus       475 ~sp~~~~l~~~  485 (513)
                      |+|-...|-+|
T Consensus       387 FcP~EDvLGIG  397 (545)
T KOG1272|consen  387 FCPYEDVLGIG  397 (545)
T ss_pred             eccHHHeeecc
Confidence            99965555444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=1.5e-17  Score=153.04  Aligned_cols=264  Identities=16%  Similarity=0.228  Sum_probs=179.9

Q ss_pred             ECCCCCeEEE--EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCEEEEEeCCCc
Q 010296          167 LSEDDSKGFS--ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRYLASGGLDRH  243 (513)
Q Consensus       167 ~s~~~~~l~t--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~  243 (513)
                      |+.+..++|+  .+.-|.|-||++.....+--     ..+.          -......|+.+.|.| |...||+++.||.
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD-----gv~p----------~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~  651 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD-----GVMP----------GLFNGTLVTDLHWDPFDDERLAVATDDGQ  651 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCc-----cccc----------ccccCceeeecccCCCChHHeeecccCce
Confidence            3344555653  46679999999976543210     0010          112355699999999 7788999999999


Q ss_pred             EEEEeCCCcc-------eeeeccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296          244 IHLWDTRIQE-------HIQAFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       244 i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  315 (513)
                      |++|.+..+.       +-..+..|...|+++.|+|- ...|++++.|-+|++||+.+++....+.+|.+.|..++|+|+
T Consensus       652 i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd  731 (1012)
T KOG1445|consen  652 INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD  731 (1012)
T ss_pred             EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence            9999987543       34567889999999999994 457889999999999999999999999999999999999999


Q ss_pred             CeE-EEEeCCCcEEEEecCCCeeeEEecCC---CCeeEEEeecCCe-EEEEe----CCCCEEEEecCCC--CeeEEeecC
Q 010296          316 ERV-LTVGRDRSMQLWKVPEESRLVFRAPA---SSLECCCFISNDE-FLSGS----DDGSIELWSLLRK--KPVYIVKNA  384 (513)
Q Consensus       316 ~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~-~~~~~----~dg~i~iwd~~~~--~~~~~~~~~  384 (513)
                      |+. ++.+.||+|++|..+........+..   ..-..+.|.-+|+ +++.+    +...|.+|+..+.  .++++....
T Consensus       732 Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD  811 (1012)
T KOG1445|consen  732 GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD  811 (1012)
T ss_pred             CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec
Confidence            954 59999999999999877655443322   2334567777776 33333    3456888887653  344443211


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                      ....                                    +.--.+.+|. -+|++|-.|..|.+|.+-.....+..+..
T Consensus       812 vaps------------------------------------~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~  855 (1012)
T KOG1445|consen  812 VAPS------------------------------------PLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAP  855 (1012)
T ss_pred             ccCc------------------------------------cccccccCCCceEEEecCCCceEEEEEecCCCceeeeccc
Confidence            1100                                    0001122333 46788889999999999876555555444


Q ss_pred             cCcccEEEEEEeecCCCE
Q 010296          464 LPLVGFVNSLAFAKSGQF  481 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~  481 (513)
                      +.....-..++|.+..+.
T Consensus       856 f~sp~~hqGl~fl~K~~C  873 (1012)
T KOG1445|consen  856 FMSPVGHQGLAFLQKLKC  873 (1012)
T ss_pred             ccCCCcccceeeeccccc
Confidence            322333345666655443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=2.7e-15  Score=129.93  Aligned_cols=280  Identities=13%  Similarity=0.182  Sum_probs=199.5

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ...|+.+.|+.+...|..|+.||. ++|.........                   ........|.-+-|+  ..++|..
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~-------------------~~~~~~~~IvEmLFS--SSLvaiV   62 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCF-------------------SKDTEGVSIVEMLFS--SSLVAIV   62 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCce-eEEecCchHHhh-------------------cccCCCeEEEEeecc--cceeEEE
Confidence            456788889999999999999984 777776543311                   112223446667776  4466655


Q ss_pred             eCC--CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc---cCCeEEEEee
Q 010296          239 GLD--RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH---QSEVLTIDCL  313 (513)
Q Consensus       239 ~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~  313 (513)
                      +.+  ..+++++++.+..+..+. ....|.++.++.  ++|+++-.+ .|+|||+++.+.+.++...   ...+.+++++
T Consensus        63 ~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n  138 (391)
T KOG2110|consen   63 SIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPN  138 (391)
T ss_pred             ecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccC
Confidence            544  459999998888777766 556788998875  457666554 4999999999998887543   3445666666


Q ss_pred             CCCe-EE--EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCC-EEEEecCCCCeeEEeecCCCc
Q 010296          314 RKER-VL--TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGS-IELWSLLRKKPVYIVKNAHPL  387 (513)
Q Consensus       314 ~~~~-~~--~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~  387 (513)
                      +.+. ++  .....|.|.+||+.+-+.. .+..|.+.+.+++|+++|. +++++..|+ ||||.+.+|+.++.+..... 
T Consensus       139 ~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-  217 (391)
T KOG2110|consen  139 NANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-  217 (391)
T ss_pred             CCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-
Confidence            5553 43  2335799999999887766 6779999999999999997 778888886 79999999999999875332 


Q ss_pred             ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcce-e-------
Q 010296          388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDI-Q-------  459 (513)
Q Consensus       388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~-~-------  459 (513)
                                                        ...|.+++|+|++++|++.+..++|.||.+....... .       
T Consensus       218 ----------------------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~  263 (391)
T KOG2110|consen  218 ----------------------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTS  263 (391)
T ss_pred             ----------------------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCc
Confidence                                              3349999999999999999999999999996531000 0       


Q ss_pred             -------eee--------------------ecCcccEEEEEEee--cCCCEEEEEecCCCcccccccCCC
Q 010296          460 -------PLY--------------------NLPLVGFVNSLAFA--KSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       460 -------~~~--------------------~~~~~~~v~~v~~s--p~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                             ...                    .++..+.-..+.+.  +..+++.++ +.||.+..+.+...
T Consensus       264 ~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~va-s~dG~~y~y~l~~~  332 (391)
T KOG2110|consen  264 WFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVA-SYDGHLYSYRLPPK  332 (391)
T ss_pred             ccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEE-EcCCeEEEEEcCCC
Confidence                   000                    00111111334444  466778888 89999999988764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.5e-16  Score=134.82  Aligned_cols=303  Identities=15%  Similarity=0.184  Sum_probs=188.7

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CCEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GRYLAS  237 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s  237 (513)
                      .-.+..++|++--..+|++..|-+|++|+-.. +....+                  .......|+|++|-|. +..|++
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~L------------------ks~sQrnvtclawRPlsaselav  158 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKL------------------KSVSQRNVTCLAWRPLSASELAV  158 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCcee------------------cchhhcceeEEEeccCCcceeee
Confidence            45578899999767788999999999999776 332222                  1234567999999995 456777


Q ss_pred             EeCCCcEEEEeCCCc----ce----------eeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCceeEEeec
Q 010296          238 GGLDRHIHLWDTRIQ----EH----------IQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~  302 (513)
                      |+. +-|.+|.....    ..          +...++| .+|++|.|.++|..+++++. +..|.|||..++..+.....
T Consensus       159 gCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~  236 (445)
T KOG2139|consen  159 GCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK  236 (445)
T ss_pred             eec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc
Confidence            775 45999975421    11          2223445 68999999999999998875 67899999999987766655


Q ss_pred             ccCCeEEEEeeCCC-eEEEEeCCCcEEEEecC-CCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEE
Q 010296          303 HQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVP-EESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       303 ~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  380 (513)
                      ..+.+.-+.|+|++ .++++..|+..++|+.. +..........+.|...+|+|.|.++.-...|.-++|.+.-...-..
T Consensus       237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~  316 (445)
T KOG2139|consen  237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSV  316 (445)
T ss_pred             CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCcc
Confidence            67788899999998 56688899999999553 33333344445589999999999855433444556666543221111


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC--------CcEEEEEeC
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN--------GSVRLWAIE  452 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d--------g~v~vwd~~  452 (513)
                      +............          .......+...   .....+.+.+++|.|.|.+||+.-..        +.|.+||..
T Consensus       317 ~~~~~~~k~~lli----------aDL~e~ti~ag---~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr  383 (445)
T KOG2139|consen  317 FLRPQSIKRVLLI----------ADLQEVTICAG---QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR  383 (445)
T ss_pred             ccCcccceeeeee----------ccchhhhhhcC---cccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence            1100000000000          00000000000   02234558999999999999987543        347777776


Q ss_pred             CCCcceeee-eecCcccEEEEEEeec---CCCEEEEEecCCCccccccc
Q 010296          453 SETKDIQPL-YNLPLVGFVNSLAFAK---SGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       453 ~~~~~~~~~-~~~~~~~~v~~v~~sp---~~~~l~~~~~~dg~v~~W~~  497 (513)
                      .. ..+... ..+.......-+.|+|   +|.+|.++ =..|.+.-|.+
T Consensus       384 ~s-p~vels~cg~i~ge~P~~IsF~pl~n~g~lLsia-WsTGriq~ypl  430 (445)
T KOG2139|consen  384 KS-PPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIA-WSTGRIQRYPL  430 (445)
T ss_pred             cc-CceEEEecccccCCCCceEEeeecccCCcEEEEE-eccCceEeeee
Confidence            54 122211 1111222244566665   46666666 55567766644

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4.8e-17  Score=141.40  Aligned_cols=253  Identities=17%  Similarity=0.180  Sum_probs=183.9

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------cceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEE
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI------QEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVK  287 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~  287 (513)
                      .+.+|.+.|.+|.|+.++++|++|+.|..+++|++..      .+++..... |...|.|++|....+.|++|..+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            3568999999999999999999999999999999753      344444433 568999999999999999999999999


Q ss_pred             EEeCCCCceeEEeec--ccCCeEEEEeeC-CCeEEEEeCCCcEEEEecCCCe----eeEEecCCCCeeEEEeecCC--eE
Q 010296          288 IWNAEDRAYISTLFG--HQSEVLTIDCLR-KERVLTVGRDRSMQLWKVPEES----RLVFRAPASSLECCCFISND--EF  358 (513)
Q Consensus       288 iwd~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~--~~  358 (513)
                      ..|+.+.+.+..+..  ..+.|+.+..+| ++.|++.+.++.|.+||.+...    .............+.|+|..  .+
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li  210 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI  210 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence            999999988877752  335899999999 5678899999999999998655    22333344567788898876  37


Q ss_pred             EEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE
Q 010296          359 LSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA  437 (513)
Q Consensus       359 ~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  437 (513)
                      ++.+..+-+.+||.+..+ ++.........                               ......-.++.|+|+|..|
T Consensus       211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L-------------------------------~~~~~~~M~~~~~~~G~Q~  259 (609)
T KOG4227|consen  211 LVNSETGGPNVFDRRMQARPVYQRSMFKGL-------------------------------PQENTEWMGSLWSPSGNQF  259 (609)
T ss_pred             EeccccCCCCceeeccccchHHhhhccccC-------------------------------cccchhhhheeeCCCCCee
Confidence            788889999999987653 22221110000                               0101114577899999988


Q ss_pred             EEecCCCcEEEEEeCCCCcceeeee----ecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          438 ASGAGNGSVRLWAIESETKDIQPLY----NLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       438 ~~g~~dg~v~vwd~~~~~~~~~~~~----~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      ++--....-.+||+.+....+....    .+-....+.+++|.-|-. +++| +++-.|.+|.+...
T Consensus       260 msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tG-SD~~~i~~WklP~~  324 (609)
T KOG4227|consen  260 MSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATG-SDHWGIHIWKLPRA  324 (609)
T ss_pred             hhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eecc-CcccceEEEecCCC
Confidence            8877666778889887522221111    111234577888876644 6677 89999999977543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2e-17  Score=145.56  Aligned_cols=194  Identities=19%  Similarity=0.221  Sum_probs=155.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec-
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG-  302 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-  302 (513)
                      .+++|+++|..|++|+.||++|||++.+...+.....|...|.++.|+|||++|++.+.| ..+||++.++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999998888888888899999999999999999999999 999999999977666542 


Q ss_pred             -ccCCeEEEEeeCCC-----eEEE-EeCCCcEEEEecCCCee------eEEecCCCCeeEEEeecCCe-EEEEeCCCCEE
Q 010296          303 -HQSEVLTIDCLRKE-----RVLT-VGRDRSMQLWKVPEESR------LVFRAPASSLECCCFISNDE-FLSGSDDGSIE  368 (513)
Q Consensus       303 -~~~~v~~~~~~~~~-----~~~~-~~~d~~i~iwd~~~~~~------~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~  368 (513)
                       .......+.|..++     ++++ ....+.|+.|++.....      .........|.+++++++|+ ++.|+.+|.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             22234566676655     3332 23456677766643222      12333456899999999998 55899999999


Q ss_pred             EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEE
Q 010296          369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRL  448 (513)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~v  448 (513)
                      |++..+.+.++.++..|                                    ...|+.+.|+|+.+++++.+.+..+.|
T Consensus       307 i~~~~~lq~~~~vk~aH------------------------------------~~~VT~ltF~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAH------------------------------------LGFVTGLTFSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             EEEeceeeeeEeehhhh------------------------------------eeeeeeEEEcCCcCcccccccCCceeE
Confidence            99999999888887544                                    445999999999999999999999999


Q ss_pred             EEeCCC
Q 010296          449 WAIESE  454 (513)
Q Consensus       449 wd~~~~  454 (513)
                      ..+.-.
T Consensus       351 ~~l~vd  356 (398)
T KOG0771|consen  351 TKLAVD  356 (398)
T ss_pred             EEEeec
Confidence            888653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.76  E-value=3.8e-17  Score=147.60  Aligned_cols=209  Identities=15%  Similarity=0.207  Sum_probs=166.8

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI  251 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~  251 (513)
                      ..|+.++.||.+.|.+-. ++...                   ....|.+.|.+-.|+|+|.-|++++.||.|++|. ++
T Consensus        76 d~~~i~s~DGkf~il~k~-~rVE~-------------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rs  134 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS-ARVER-------------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RS  134 (737)
T ss_pred             ceEEEEcCCceEEEeccc-chhhh-------------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-cc
Confidence            468888999999987643 33332                   2468999999999999999999999999999998 56


Q ss_pred             cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEE
Q 010296          252 QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLW  330 (513)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iw  330 (513)
                      |-...++.....+|.|++|.|+.+.++.+. .+++.|=-+.....+-..+.|.+-|.++.|++.. .+++++.|-..++|
T Consensus       135 GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvW  213 (737)
T KOG1524|consen  135 GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIW  213 (737)
T ss_pred             chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEee
Confidence            776666766788999999999987766553 4677887777777777888999999999999976 45599999999999


Q ss_pred             ecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCC
Q 010296          331 KVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN  410 (513)
Q Consensus       331 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  410 (513)
                      |...........|..+|++++|.|+..|+.++. .++++=                                        
T Consensus       214 D~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R~~----------------------------------------  252 (737)
T KOG1524|consen  214 DAQGANLFTSAAEEYAITSVAFNPEKDYLLWSY-NTARFS----------------------------------------  252 (737)
T ss_pred             cccCcccccCChhccceeeeeeccccceeeeee-eeeeec----------------------------------------
Confidence            988877777888999999999999955666654 334421                                        


Q ss_pred             CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          411 LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       411 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                              ....+.|..++||+||..+++|+..|.|.+=.+
T Consensus       253 --------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  253 --------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA  285 (737)
T ss_pred             --------CCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence                    111223999999999999999999998766443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=9.8e-17  Score=141.24  Aligned_cols=198  Identities=20%  Similarity=0.334  Sum_probs=145.3

Q ss_pred             EEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEec--
Q 010296          266 SCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFRA--  342 (513)
Q Consensus       266 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~--  342 (513)
                      .+++|+++|..|++++.||+++||+..+...+.....|...|.++.|+|++.++ +.+.+ ..+||+..++..+....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999988877777778899999999999999655 77777 99999999885553322  


Q ss_pred             -CCCCeeEEEeecCC-----eEE-EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCC
Q 010296          343 -PASSLECCCFISND-----EFL-SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGS  415 (513)
Q Consensus       343 -~~~~v~~~~~~~~~-----~~~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  415 (513)
                       .......|.|+.++     +++ .-..-+.|+.|++...+--..++....                             
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~-----------------------------  277 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK-----------------------------  277 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhh-----------------------------
Confidence             23345566777665     333 333456677776644322111110000                             


Q ss_pred             cCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296          416 YHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       416 ~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W  495 (513)
                         ......|++++.|++|++++.|+.||.|-|++..+. +.++... ..|...|+.|.|+|+.+++++. +.+....+-
T Consensus       278 ---~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l-q~~~~vk-~aH~~~VT~ltF~Pdsr~~~sv-Ss~~~~~v~  351 (398)
T KOG0771|consen  278 ---IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL-QRLQYVK-EAHLGFVTGLTFSPDSRYLASV-SSDNEAAVT  351 (398)
T ss_pred             ---hhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee-eeeEeeh-hhheeeeeeEEEcCCcCccccc-ccCCceeEE
Confidence               111122999999999999999999999999999876 3333332 2388899999999999999996 777777777


Q ss_pred             ccCC
Q 010296          496 GHLP  499 (513)
Q Consensus       496 ~~~~  499 (513)
                      .+.-
T Consensus       352 ~l~v  355 (398)
T KOG0771|consen  352 KLAV  355 (398)
T ss_pred             EEee
Confidence            6544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=1.3e-16  Score=135.34  Aligned_cols=210  Identities=17%  Similarity=0.155  Sum_probs=162.3

Q ss_pred             CCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeC-CCCccccccCCChhhhccCCCCCCCCCCCCCcccEE
Q 010296          146 PEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDV-SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL  224 (513)
Q Consensus       146 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  224 (513)
                      ....+..+++..|...|++|+|+|..+.|++|+.|..-+||.. ..++-..+                 ..+..++...+
T Consensus        42 ~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkpt-----------------lvLlRiNrAAt  104 (361)
T KOG1523|consen   42 ADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPT-----------------LVLLRINRAAT  104 (361)
T ss_pred             CCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccc-----------------eeEEEecccee
Confidence            3446778999999999999999999999999999999999998 44433222                 24567889999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCccee----eeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC-----C--
Q 010296          225 ALAVSSDGRYLASGGLDRHIHLWDTRIQEHI----QAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE-----D--  293 (513)
Q Consensus       225 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~--  293 (513)
                      ++.|+|..+.||+|+....|.||-++...--    +.-+.+...|+++.|+|++-+|++|+.|+..+|+..-     .  
T Consensus       105 ~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekp  184 (361)
T KOG1523|consen  105 CVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKP  184 (361)
T ss_pred             eEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCC
Confidence            9999999999999999999999987644321    2223467889999999999999999999999998641     1  


Q ss_pred             -----------CceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCe--eeEEecCCCCeeEEEeecCCeEE
Q 010296          294 -----------RAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEES--RLVFRAPASSLECCCFISNDEFL  359 (513)
Q Consensus       294 -----------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~  359 (513)
                                 |+.+..+....+.+..+.|+|+| +++-.+.|..+.+-|.....  ........-+..++.|.....++
T Consensus       185 ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv  264 (361)
T KOG1523|consen  185 APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVV  264 (361)
T ss_pred             CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCcee
Confidence                       22233343567789999999987 66689999999999987764  33344444677888888887788


Q ss_pred             EEeCCCCEEEEec
Q 010296          360 SGSDDGSIELWSL  372 (513)
Q Consensus       360 ~~~~dg~i~iwd~  372 (513)
                      .++.|..-.++..
T Consensus       265 ~ag~~c~P~lf~~  277 (361)
T KOG1523|consen  265 AAGYDCGPVLFVT  277 (361)
T ss_pred             ecCCCCCceEEEe
Confidence            8877755444443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.2e-16  Score=142.89  Aligned_cols=275  Identities=12%  Similarity=0.154  Sum_probs=196.8

Q ss_pred             ccCCCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          157 KHRQSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      .|...-+.|..+|||+|++ ||..-..|++||+........-                   ..-...|.-.-++-|-..+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-------------------hlDae~V~feiLsDD~SK~  109 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-------------------HLDAEVVDFEILSDDYSKS  109 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-------------------cccccceeEEEeccchhhh
Confidence            5788899999999999876 6778899999999876543211                   1113345555566665566


Q ss_pred             EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  315 (513)
                      +.-..|.+|-+...........++   ..-..|+++.-..-|++++....|+-+++..|+.+..+....+.++++..++-
T Consensus       110 v~L~~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~  186 (703)
T KOG2321|consen  110 VFLQNDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE  186 (703)
T ss_pred             eEeecCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc
Confidence            666667777765432111111122   22345666544444666777778999999999999998888899999999996


Q ss_pred             CeEE-EEeCCCcEEEEecCCCeeeEEe-------cCC-----CCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEe
Q 010296          316 ERVL-TVGRDRSMQLWKVPEESRLVFR-------APA-----SSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       316 ~~~~-~~~~d~~i~iwd~~~~~~~~~~-------~~~-----~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                      ..|+ +|+.+|.|-+||.+........       .+.     ..|+++.|+.+|. +++|+..|.|.|||+++.+|+..-
T Consensus       187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k  266 (703)
T KOG2321|consen  187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK  266 (703)
T ss_pred             cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec
Confidence            5554 6667999999999887654211       122     2489999999885 889999999999999999998776


Q ss_pred             ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC--CCEEEEecCCCcEEEEEeCCCCccee
Q 010296          382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG--SDLAASGAGNGSVRLWAIESETKDIQ  459 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~g~~dg~v~vwd~~~~~~~~~  459 (513)
                      .....                                    -+|..+.|.+.  ++.+++.. ...++|||-.++    .
T Consensus       267 dh~~e------------------------------------~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~G----k  305 (703)
T KOG2321|consen  267 DHGYE------------------------------------LPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTG----K  305 (703)
T ss_pred             ccCCc------------------------------------cceeeecccccCCCceEEecc-hHHhhhcccccC----C
Confidence            53332                                    23888888775  45566554 458999999988    3


Q ss_pred             eeeecCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296          460 PLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       460 ~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W  495 (513)
                      ++..+.....++.+++-|++.+++++ ..++.+..|
T Consensus       306 ~~asiEpt~~lND~C~~p~sGm~f~A-ne~~~m~~y  340 (703)
T KOG2321|consen  306 PMASIEPTSDLNDFCFVPGSGMFFTA-NESSKMHTY  340 (703)
T ss_pred             ceeeccccCCcCceeeecCCceEEEe-cCCCcceeE
Confidence            34444456669999999999999999 777666655

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.7e-16  Score=153.05  Aligned_cols=231  Identities=15%  Similarity=0.113  Sum_probs=156.4

Q ss_pred             CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcce--
Q 010296          180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRIQEH--  254 (513)
Q Consensus       180 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~--  254 (513)
                      +..|.+||...... ..                   +..|...+.+.+|+|+|+.|+.++.+   ..|++||+.+++.  
T Consensus       183 ~~~i~i~d~dg~~~-~~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~  242 (429)
T PRK01742        183 PYEVRVADYDGFNQ-FI-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV  242 (429)
T ss_pred             eEEEEEECCCCCCc-eE-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence            47899999876542 22                   24567789999999999999987654   4699999988754  


Q ss_pred             eeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEE--EeCCCCceeEEeecccCCeEEEEeeCCCe-EEEEe-CCCcEEE
Q 010296          255 IQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKI--WNAEDRAYISTLFGHQSEVLTIDCLRKER-VLTVG-RDRSMQL  329 (513)
Q Consensus       255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i  329 (513)
                      +..+.+|   ...++|+|+|+.|+.++ .+|.+.|  ||+.++. +..+..+...+....|+|++. ++.++ .++...+
T Consensus       243 l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I  318 (429)
T PRK01742        243 VASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQV  318 (429)
T ss_pred             EecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceE
Confidence            3334443   34689999999888764 6776555  4666655 445556677788999999986 44343 5678888


Q ss_pred             EecCCCe-eeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCC
Q 010296          330 WKVPEES-RLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSE  407 (513)
Q Consensus       330 wd~~~~~-~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  407 (513)
                      |.+.... ......+..  ....|+|+|. ++..+.+ .+.+||+.+++....... ..                     
T Consensus       319 ~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~-~~---------------------  373 (429)
T PRK01742        319 YRMSASGGGASLVGGRG--YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSST-FL---------------------  373 (429)
T ss_pred             EEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCC-CC---------------------
Confidence            8764322 112222222  4578999986 5455544 566799988765432211 00                     


Q ss_pred             CCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC-CcceeeeeecCcccEEEEEEeecC
Q 010296          408 NGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE-TKDIQPLYNLPLVGFVNSLAFAKS  478 (513)
Q Consensus       408 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~-~~~~~~~~~~~~~~~v~~v~~sp~  478 (513)
                                       ...+.|+|+|++|++++.+|.+.+|.+.+. ....+.+..  +.+.+..++|+|-
T Consensus       374 -----------------~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~--~~g~~~~p~wsp~  426 (429)
T PRK01742        374 -----------------DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG--SDGQVKFPAWSPY  426 (429)
T ss_pred             -----------------CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC--CCCCCCCcccCCC
Confidence                             345679999999999999998988887431 133444432  5677888999985

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=3.1e-16  Score=133.00  Aligned_cols=238  Identities=16%  Similarity=0.179  Sum_probs=174.3

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc---eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC-C-
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE---HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED-R-  294 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~-  294 (513)
                      ..+|+|.+|+++...+|++.....|.||......   ..+++..|...|+++.|+|..+.|++|+.|..-++|.... + 
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            5679999999999999999999999999876554   6788899999999999999999999999999999999843 3 


Q ss_pred             -ceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-----EEecCCCCeeEEEeecCCe-EEEEeCCCC
Q 010296          295 -AYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-----VFRAPASSLECCCFISNDE-FLSGSDDGS  366 (513)
Q Consensus       295 -~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~~~~~~dg~  366 (513)
                       ++...+..+...++++.|+|.. +|++++....|.||-+....-.     ......+.|.++.|+|++- +++|+.|+.
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence             3344556688999999999975 6778888899999988765543     3445567899999999996 669999999


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV  446 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v  446 (513)
                      .+||..--    +.+..... .      .+-++++     +-|.+..   ......+++..+.|+|+|..|+-.+.|..|
T Consensus       170 ~rVfSayI----K~Vdekpa-p------~pWgsk~-----PFG~lm~---E~~~~ggwvh~v~fs~sG~~lawv~Hds~v  230 (361)
T KOG1523|consen  170 CRVFSAYI----KGVDEKPA-P------TPWGSKM-----PFGQLMS---EASSSGGWVHGVLFSPSGNRLAWVGHDSTV  230 (361)
T ss_pred             eeEEEEee----eccccCCC-C------CCCccCC-----cHHHHHH---hhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence            99997421    11111000 0      0000000     0000000   002456789999999999999999999999


Q ss_pred             EEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296          447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKS  478 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~  478 (513)
                      .+-|.....+.++.+..  ..-+..++.|-..
T Consensus       231 ~~~da~~p~~~v~~~~~--~~lP~ls~~~ise  260 (361)
T KOG1523|consen  231 SFVDAAGPSERVQSVAT--AQLPLLSVSWISE  260 (361)
T ss_pred             EEeecCCCchhccchhh--ccCCceeeEeecC
Confidence            99998776433333332  1245566666544

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.74  E-value=4.2e-16  Score=130.44  Aligned_cols=244  Identities=18%  Similarity=0.210  Sum_probs=176.3

Q ss_pred             ccEEEEEEcC---CCCEEEEEeC----CCcEEEEeCC--Ccceeeec-cCcCCCeEEEEEecCCC-----eEEEEeCCCc
Q 010296          221 KHILALAVSS---DGRYLASGGL----DRHIHLWDTR--IQEHIQAF-PGHRGPVSCLTFRQGTS-----ELFSGSFDRT  285 (513)
Q Consensus       221 ~~v~~~~~s~---~~~~l~s~~~----dg~i~vwd~~--~~~~~~~~-~~~~~~v~~~~~~~~~~-----~l~~~~~dg~  285 (513)
                      -+++++.|+.   ...+|+.|+.    .+.|.|..+.  +++.+..- ..|..+++.+.|.|+..     +|+++  +-.
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~  122 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF  122 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence            3578888884   2447888874    4566666543  44443221 24889999999999763     34443  347


Q ss_pred             EEEEeCCCC--ce--eEEe-----ecccCCeEEEEeeC-C-CeEEEEeCCCcEEEEecCCCe----eeEEecCCCCeeEE
Q 010296          286 VKIWNAEDR--AY--ISTL-----FGHQSEVLTIDCLR-K-ERVLTVGRDRSMQLWKVPEES----RLVFRAPASSLECC  350 (513)
Q Consensus       286 i~iwd~~~~--~~--~~~~-----~~~~~~v~~~~~~~-~-~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~  350 (513)
                      +++|.+...  +.  ...+     ..+..+++++.|+. + ..+.+.+-|-++.|||+.++.    ...+..|...|..+
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI  202 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI  202 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence            999998732  11  1111     23566899999987 3 355588899999999999863    33678999999999


Q ss_pred             EeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296          351 CFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV  428 (513)
Q Consensus       351 ~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  428 (513)
                      +|..++.  |++.+.||.+|+||++...-...+...                                  .....+...+
T Consensus       203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~----------------------------------p~~~~pLlRL  248 (364)
T KOG0290|consen  203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED----------------------------------PSPSTPLLRL  248 (364)
T ss_pred             EeccCccceEEEecCCCcEEEEEecccccceEEecC----------------------------------CCCCCcceee
Confidence            9999664  899999999999999987644444321                                  1113347888


Q ss_pred             EEecCC-CEEEEecCC-CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          429 TVCGGS-DLAASGAGN-GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       429 ~~s~~~-~~l~~g~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      +|++.. ++|||-..| ..|.|.|++....++..+..  |.+.|++++|.|....-++++|+|..+.+||+..-.+
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            898744 677776655 56999999988777777766  9999999999998776555559999999999876554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.72  E-value=9.2e-15  Score=136.24  Aligned_cols=297  Identities=11%  Similarity=0.075  Sum_probs=183.8

Q ss_pred             CCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE
Q 010296          146 PEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA  225 (513)
Q Consensus       146 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (513)
                      ....+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+..+                    .-.....+
T Consensus        23 ~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i--------------------~~G~~~~~   82 (369)
T PF02239_consen   23 GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI--------------------KVGGNPRG   82 (369)
T ss_dssp             TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE--------------------E-SSEEEE
T ss_pred             CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE--------------------ecCCCcce
Confidence            3444455555544444455789999999999999999999999999988765                    22344788


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEeCCCcceeeeccCc-------CCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCce
Q 010296          226 LAVSSDGRYLASGG-LDRHIHLWDTRIQEHIQAFPGH-------RGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRAY  296 (513)
Q Consensus       226 ~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~  296 (513)
                      +++|++|+++++++ ..+.+.++|..+.+++..+...       ...+.++..+|....++..-. .+.|.+.|......
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence            99999999998776 5799999999999998877543       346778888888886655544 58888889876544


Q ss_pred             eE-EeecccCCeEEEEeeCCCeEE-E-EeCCCcEEEEecCCCeeeEEec-----CCCCeeEE-------Eeec--CCe-E
Q 010296          297 IS-TLFGHQSEVLTIDCLRKERVL-T-VGRDRSMQLWKVPEESRLVFRA-----PASSLECC-------CFIS--NDE-F  358 (513)
Q Consensus       297 ~~-~~~~~~~~v~~~~~~~~~~~~-~-~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~-------~~~~--~~~-~  358 (513)
                      +. .............|.|+++++ + ....+.|-++|..++.......     |..++..+       .|..  .+. .
T Consensus       163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~  242 (369)
T PF02239_consen  163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA  242 (369)
T ss_dssp             EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE
T ss_pred             cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee
Confidence            32 233345567788999998544 4 3457789999998887663321     11122211       1211  122 2


Q ss_pred             EEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE
Q 010296          359 LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA  438 (513)
Q Consensus       359 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  438 (513)
                      ++.-....+.+|+....+.+..+.....                                      -.-+..+|+++++.
T Consensus       243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~--------------------------------------glFi~thP~s~~vw  284 (369)
T PF02239_consen  243 IPLIGTDPVSVHDDYAWKVVKTIPTQGG--------------------------------------GLFIKTHPDSRYVW  284 (369)
T ss_dssp             EEEEE--TTT-STTTBTSEEEEEE-SSS--------------------------------------S--EE--TT-SEEE
T ss_pred             cccccCCccccchhhcCeEEEEEECCCC--------------------------------------cceeecCCCCccEE
Confidence            2333344667899999999998875322                                      25577799999999


Q ss_pred             Ee----cCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCC-cccccccCCCcc
Q 010296          439 SG----AGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEP-RLGRWGHLPAAR  502 (513)
Q Consensus       439 ~g----~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg-~v~~W~~~~~~~  502 (513)
                      +.    ...++|.|+|..+. .....+... ....+..+.|+++|+++.++.-... .|.+||..+-..
T Consensus       285 vd~~~~~~~~~v~viD~~tl-~~~~~i~~~-~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  285 VDTFLNPDADTVQVIDKKTL-KVVKTITPG-PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             EE-TT-SSHT-EEEEECCGT-EEEE-HHHH-HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             eeccCCCCCceEEEEECcCc-ceeEEEecc-CCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence            88    45589999999887 222333211 1234889999999998877755544 899999877643

...

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=7.5e-16  Score=150.06  Aligned_cols=272  Identities=18%  Similarity=0.234  Sum_probs=181.6

Q ss_pred             ccCCCcccchhhhhcc---CCCeEEEEECC--CCCeEEEEeCCceEEEEeCCCCc-cccccCCChhhhccCCCCCCCCCC
Q 010296          143 VQKPEATDEFRVLLKH---RQSVTAVALSE--DDSKGFSASKDGSILHWDVSSGK-GVKYLWPSEEVLKSHGAKDPQGRA  216 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h---~~~V~~~~~s~--~~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  216 (513)
                      +|+-+....+..+..+   ...|+.+.+-.  |..++++|+.||.|+||+---.. ....      .+.....-  ....
T Consensus      1090 vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e------LVTaw~~L--s~~~ 1161 (1387)
T KOG1517|consen 1090 VWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE------LVTAWSSL--SDQL 1161 (1387)
T ss_pred             EEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCce------eEEeeccc--cccC
Confidence            3444444444444433   45688888855  56789999999999999743221 1110      01110000  0011


Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEe-cCCCeEEEEeCCCcEEEEeCCCC
Q 010296          217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      .+..+.-.-+.|.....+|++++.-..|+|||.....++..+.. ....|+++.-+ ..|+.+++|..||.|++||.+..
T Consensus      1162 ~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1162 PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred             ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccC
Confidence            11122225578888777777777788999999998887776654 33456666543 35789999999999999999864


Q ss_pred             c---eeEEeecccCC--eEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee---EEecC---CCCeeEEEeecCCe-EEE
Q 010296          295 A---YISTLFGHQSE--VLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL---VFRAP---ASSLECCCFISNDE-FLS  360 (513)
Q Consensus       295 ~---~~~~~~~~~~~--v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~---~~~~~---~~~v~~~~~~~~~~-~~~  360 (513)
                      .   .+...+.|...  |..+.+.+.|  .+++++.+|.|++||++.....   ....+   .+.++++.+++... +++
T Consensus      1242 ~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1242 PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred             CccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeee
Confidence            3   46667778776  9999998865  6899999999999999985322   11222   22488899988876 456


Q ss_pred             EeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe
Q 010296          361 GSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG  440 (513)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g  440 (513)
                      |+. +.|.||++...+ +..++......                              ....+.+.|++|+|..-+||+|
T Consensus      1322 Gs~-q~ikIy~~~G~~-l~~~k~n~~F~------------------------------~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1322 GSA-QLIKIYSLSGEQ-LNIIKYNPGFM------------------------------GQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             cCc-ceEEEEecChhh-hcccccCcccc------------------------------cCcCCCcceeeecchhHhhhhc
Confidence            655 999999976543 33332111100                              2222347999999999999999


Q ss_pred             cCCCcEEEEEeCCC
Q 010296          441 AGNGSVRLWAIESE  454 (513)
Q Consensus       441 ~~dg~v~vwd~~~~  454 (513)
                      +.|.+|.||.....
T Consensus      1370 ~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEKP 1383 (1387)
T ss_pred             cCCceEEEeecCCc
Confidence            99999999997664

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=1.5e-16  Score=131.20  Aligned_cols=248  Identities=16%  Similarity=0.209  Sum_probs=166.3

Q ss_pred             cCCCcccchhhhh-ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          144 QKPEATDEFRVLL-KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       144 ~~~~~~~~~~~~~-~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      |........-.+. .|+..|+.+.--|+ ..|.+-+.|+.+.+|++..+..+.                      -|.-.
T Consensus        40 w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~----------------------i~Si~   96 (323)
T KOG0322|consen   40 WVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFIS----------------------IHSIV   96 (323)
T ss_pred             EEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEE----------------------Eeeee
Confidence            4444444445555 67889999999998 568899999999999998755432                      12223


Q ss_pred             EEEEEEcCC-----CC----EEEEEeCC-CcEEEEeCCCcceeeecc----CcCCCeEEEEEec-CCC--eEEEEeCCCc
Q 010296          223 ILALAVSSD-----GR----YLASGGLD-RHIHLWDTRIQEHIQAFP----GHRGPVSCLTFRQ-GTS--ELFSGSFDRT  285 (513)
Q Consensus       223 v~~~~~s~~-----~~----~l~s~~~d-g~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~-~~~--~l~~~~~dg~  285 (513)
                      +.++-|.+.     ++    .++.-+.. ..+.+-|......+....    +..+.+.|..+.. ++.  +|++|..+|.
T Consensus        97 ~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsgh  176 (323)
T KOG0322|consen   97 VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGH  176 (323)
T ss_pred             ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCe
Confidence            334444321     11    11111110 012222222111222211    2345666666432 333  3568888999


Q ss_pred             EEEEeCCCCce----------eEEeecccCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCC--eee---EEecCCCCeeE
Q 010296          286 VKIWNAEDRAY----------ISTLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEE--SRL---VFRAPASSLEC  349 (513)
Q Consensus       286 i~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~--~~~---~~~~~~~~v~~  349 (513)
                      |.+||+.++..          ......|..+|.++.+.+. .+=++++.+..+..|++...  ...   ........+..
T Consensus       177 vv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~g  256 (323)
T KOG0322|consen  177 VVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSG  256 (323)
T ss_pred             EEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccc
Confidence            99999998733          3334568899999999763 35567788888999988643  221   23344556788


Q ss_pred             EEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296          350 CCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV  428 (513)
Q Consensus       350 ~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  428 (513)
                      +.+-|+++ +++++.|+.||||..++..++..++.+                                     ...|+++
T Consensus       257 vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-------------------------------------sagvn~v  299 (323)
T KOG0322|consen  257 VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-------------------------------------SAGVNAV  299 (323)
T ss_pred             eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-------------------------------------hcceeEE
Confidence            88999997 679999999999999999999988543                                     3449999


Q ss_pred             EEecCCCEEEEecCCCcEEEEEe
Q 010296          429 TVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       429 ~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      +|+|+..++|+++.|++|.+|++
T Consensus       300 Afspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  300 AFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.72  E-value=1.5e-17  Score=147.72  Aligned_cols=228  Identities=17%  Similarity=0.223  Sum_probs=181.3

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296          221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      ...+.+.++.+|++|+.|+..|.|-.+|+.++++...+. -...|..+.|..+.++++++ ....++|||- .|..++.+
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHCl  206 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCL  206 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeeh
Confidence            346789999999999999999999999999999888776 45678899998887766665 5678999995 56667777


Q ss_pred             ecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeE-EEEeCCCCEEEEecCCCCe
Q 010296          301 FGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~-~~~~~dg~i~iwd~~~~~~  377 (513)
                      . ....|..+.|.|--.|+ +++..|.++.-|+.+++.+ .+....+.+..++-+|-+-+ -+|...|+|.+|......+
T Consensus       207 k-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  207 K-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             h-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence            6 44678999999987655 7778999999999999877 45556667777888887764 4999999999999999988


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcc
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKD  457 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~  457 (513)
                      +..+                                     ..|.++|.+|++.++|+|+||.+.|..|+|||++.-. .
T Consensus       286 LvKi-------------------------------------LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-q  327 (545)
T KOG1272|consen  286 LVKI-------------------------------------LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-Q  327 (545)
T ss_pred             HHHH-------------------------------------HhcCCCcceEEECCCCcEEeecccccceeEeeecccc-c
Confidence            8776                                     3455569999999999999999999999999998873 3


Q ss_pred             eeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          458 IQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       458 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      +..+..   ..+...++||..| +||++  ....|.||.
T Consensus       328 l~t~~t---p~~a~~ls~Sqkg-lLA~~--~G~~v~iw~  360 (545)
T KOG1272|consen  328 LHTYRT---PHPASNLSLSQKG-LLALS--YGDHVQIWK  360 (545)
T ss_pred             cceeec---CCCcccccccccc-ceeee--cCCeeeeeh
Confidence            333332   3456778888665 44444  334788994

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=4.8e-14  Score=119.86  Aligned_cols=234  Identities=12%  Similarity=0.215  Sum_probs=164.4

Q ss_pred             eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-EEeC
Q 010296          162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA-SGGL  240 (513)
Q Consensus       162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~  240 (513)
                      ..+++|+.|...+++|..+| .+||+++--+.....                 ......-.+.-+-|-  .++|+ +|+.
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-----------------~~~~~G~~~veMLfR--~N~laLVGGg   67 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-----------------QFIDGGFKIVEMLFR--SNYLALVGGG   67 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-----------------ccccCchhhhhHhhh--hceEEEecCC
Confidence            44599999999888888766 799998753221110                 000111122223332  33443 3433


Q ss_pred             C------CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC-CCceeEEeeccc--CCeEEEE
Q 010296          241 D------RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE-DRAYISTLFGHQ--SEVLTID  311 (513)
Q Consensus       241 d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~--~~v~~~~  311 (513)
                      .      ..|.|||=...+++..+. ...+|.++.+.++.  |++. ..+.|+||... ..+.++.+....  ..+.+++
T Consensus        68 ~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   68 SRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             CCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence            2      479999966677777776 67899999998763  4444 46789999987 445555554322  2333433


Q ss_pred             eeCCCeEEE--EeCCCcEEEEecCCCee---eEEecCCCCeeEEEeecCCe-EEEEeCCCC-EEEEecCCCCeeEEeecC
Q 010296          312 CLRKERVLT--VGRDRSMQLWKVPEESR---LVFRAPASSLECCCFISNDE-FLSGSDDGS-IELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       312 ~~~~~~~~~--~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~-i~iwd~~~~~~~~~~~~~  384 (513)
                      -..+..+++  +-.-|.|+|-|+.....   .....|.+.|.|++.+.+|. +++++..|+ |||||..++..+..+...
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG  223 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG  223 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence            333334443  33569999999977655   68899999999999999996 778998887 799999999999998754


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      ..                                   ...|.+++|||+..+||++|..|+|.||.+...
T Consensus       224 ~d-----------------------------------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  224 VD-----------------------------------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             Cc-----------------------------------hheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            32                                   234999999999999999999999999999764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.6e-16  Score=144.07  Aligned_cols=160  Identities=18%  Similarity=0.306  Sum_probs=130.9

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeec-cCcCCCeEEEEEec--CCCeEEEEeCCCcEEEEeC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF-PGHRGPVSCLTFRQ--GTSELFSGSFDRTVKIWNA  291 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~  291 (513)
                      .+.+|.+-|.|+.|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|.+.|.++.|-|  +.+.+++|..|..|+++|+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl  124 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL  124 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence            56899999999999999999999999999999999888877666 46999999999988  4567889999999999999


Q ss_pred             CC----------CceeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee-----------EEecCCCCee
Q 010296          292 ED----------RAYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL-----------VFRAPASSLE  348 (513)
Q Consensus       292 ~~----------~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~v~  348 (513)
                      ..          ......+..|...|..++..|++  .|.+++.||+|+-+|++.....           .+...--...
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk  204 (758)
T KOG1310|consen  125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK  204 (758)
T ss_pred             ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence            74          12344556788899999998876  6779999999999999874321           1111223566


Q ss_pred             EEEeecCC--eEEEEeCCCCEEEEecCC
Q 010296          349 CCCFISND--EFLSGSDDGSIELWSLLR  374 (513)
Q Consensus       349 ~~~~~~~~--~~~~~~~dg~i~iwd~~~  374 (513)
                      |+.++|..  .|++|+.+-..++||.+.
T Consensus       205 ~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  205 CLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             eeeecCCCCceEEecCCCchhhhhhhhh
Confidence            88888876  488999999999999643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.2e-15  Score=147.31  Aligned_cols=206  Identities=15%  Similarity=0.084  Sum_probs=140.3

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCC---ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKD---GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      .+.+..|...|.+.+|+|+|++|+.++.+   ..|++||+.++......                 ...+|   ...++|
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~w  255 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAF  255 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeE
Confidence            45567788899999999999999987643   47999999877532211                 11222   346899


Q ss_pred             cCCCCEEEEEe-CCCcEEEE--eCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCCCC-ceeEEeecc
Q 010296          229 SSDGRYLASGG-LDRHIHLW--DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAEDR-AYISTLFGH  303 (513)
Q Consensus       229 s~~~~~l~s~~-~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~  303 (513)
                      +|+|+.|++++ .+|.+.||  |+.++.. ..+..+...+....|+|+|+.|+.++ .+|...||++... .....+ .+
T Consensus       256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~  333 (429)
T PRK01742        256 SPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG  333 (429)
T ss_pred             CCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence            99999888765 57765554  6666554 45556777788999999999877554 5788888876532 222223 33


Q ss_pred             cCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec--CCCCeeEE
Q 010296          304 QSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL--LRKKPVYI  380 (513)
Q Consensus       304 ~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~--~~~~~~~~  380 (513)
                      ..  ....|+|++..++......+.+||+.++........ .....+.|+|+|. ++.++.++.+.+|.+  .++..+..
T Consensus       334 ~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~  410 (429)
T PRK01742        334 RG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR  410 (429)
T ss_pred             CC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence            33  457899998655333335577799988765543322 2345678999996 667778888888875  35666666


Q ss_pred             ee
Q 010296          381 VK  382 (513)
Q Consensus       381 ~~  382 (513)
                      +.
T Consensus       411 l~  412 (429)
T PRK01742        411 LP  412 (429)
T ss_pred             cc
Confidence            64

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=2e-14  Score=122.14  Aligned_cols=235  Identities=18%  Similarity=0.241  Sum_probs=160.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCC------CcEEEEeCCCCc
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFD------RTVKIWNAEDRA  295 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d------g~i~iwd~~~~~  295 (513)
                      ..+++|+.|..-+++|..+| .+||+.+--+.......+.+.+.-+.+.--.++|+ +|+..      ..|.|||=...+
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            55699999999999888666 89999875433222222222222222222334555 34332      479999977777


Q ss_pred             eeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCe-eeE-E--ecCCCCeeEEEeecCCeEE--EEeCCCCEEE
Q 010296          296 YISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES-RLV-F--RAPASSLECCCFISNDEFL--SGSDDGSIEL  369 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~-~--~~~~~~v~~~~~~~~~~~~--~~~~dg~i~i  369 (513)
                      ++..+. ...+|.++.+.++-  +++-..+.|++|...... .+. +  ......+.+++-..+..++  =|-.-|.|+|
T Consensus        87 ~i~el~-f~~~I~~V~l~r~r--iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi  163 (346)
T KOG2111|consen   87 CIIELS-FNSEIKAVKLRRDR--IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQI  163 (346)
T ss_pred             EEEEEE-eccceeeEEEcCCe--EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEE
Confidence            777776 78889999987653  333446789999987443 221 1  2222233333333333333  3556799999


Q ss_pred             EecCCCCee--EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc-E
Q 010296          370 WSLLRKKPV--YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS-V  446 (513)
Q Consensus       370 wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-v  446 (513)
                      -|+...+.-  ..+                                     ..|.+.|.|++.+-+|.++||+|..|+ |
T Consensus       164 ~dL~~~~~~~p~~I-------------------------------------~AH~s~Iacv~Ln~~Gt~vATaStkGTLI  206 (346)
T KOG2111|consen  164 VDLASTKPNAPSII-------------------------------------NAHDSDIACVALNLQGTLVATASTKGTLI  206 (346)
T ss_pred             EEhhhcCcCCceEE-------------------------------------EcccCceeEEEEcCCccEEEEeccCcEEE
Confidence            998776552  222                                     455666999999999999999999997 7


Q ss_pred             EEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      ||||..++ .+++.+..-.....|.+++|||++.+|+++ ++.|+|.|+.+...
T Consensus       207 RIFdt~~g-~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs-SdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  207 RIFDTEDG-TLLQELRRGVDRADIYCIAFSPNSSWLAVS-SDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEcCCC-cEeeeeecCCchheEEEEEeCCCccEEEEE-cCCCeEEEEEeecC
Confidence            99999998 455555544456789999999999999999 99999999976653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=5.7e-14  Score=135.18  Aligned_cols=233  Identities=10%  Similarity=0.017  Sum_probs=152.3

Q ss_pred             ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCcceeee
Q 010296          181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL---DRHIHLWDTRIQEHIQA  257 (513)
Q Consensus       181 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~  257 (513)
                      ..|.+||........                    +..+...+.+.+|||+|+.|+..+.   ...|++|++.+++....
T Consensus       179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l  238 (429)
T PRK03629        179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV  238 (429)
T ss_pred             eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc
Confidence            368888887654322                    1345567999999999999887542   45799999988764332


Q ss_pred             ccCcCCCeEEEEEecCCCeEEEE-eCCC--cEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-EEEEeC-CC--cEEEE
Q 010296          258 FPGHRGPVSCLTFRQGTSELFSG-SFDR--TVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-VLTVGR-DR--SMQLW  330 (513)
Q Consensus       258 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d~--~i~iw  330 (513)
                       ....+.+..+.|+|+|+.|+.. +.+|  .|++||+.++.... +..+...+....|+|++. ++.++. .+  .|+++
T Consensus       239 -~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~  316 (429)
T PRK03629        239 -ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV  316 (429)
T ss_pred             -cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence             2223345568999999988754 4444  59999998876544 443455678899999986 444443 34  45555


Q ss_pred             ecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CC--CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296          331 KVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DD--GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS  406 (513)
Q Consensus       331 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  406 (513)
                      ++.++....+...........|+|+|. ++..+ .+  ..|.+||+.++... .+....                     
T Consensus       317 d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~---------------------  374 (429)
T PRK03629        317 NINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTF---------------------  374 (429)
T ss_pred             ECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCC---------------------
Confidence            666665544444444556788999986 44433 33  35788898877643 222110                     


Q ss_pred             CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc---EEEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296          407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS---VRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS  478 (513)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~---v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~  478 (513)
                                       ......|+|||++|+.++.++.   ++++++...  ....+..  +.+.+...+|+|-
T Consensus       375 -----------------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~--~~~~l~~--~~~~~~~p~Wsp~  428 (429)
T PRK03629        375 -----------------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPA--TDGQVKFPAWSPY  428 (429)
T ss_pred             -----------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC--CeEECcc--CCCCcCCcccCCC
Confidence                             0335679999999999887764   667777443  2233332  5677888999873

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=2e-14  Score=142.53  Aligned_cols=251  Identities=15%  Similarity=0.251  Sum_probs=174.1

Q ss_pred             CCCCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCc-------ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcE
Q 010296          215 RATKQSKHILALAVSSDG-RYLASGGLDRHIHLWDTRIQ-------EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTV  286 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  286 (513)
                      .+..|...|..++.++.. .+|++|+.||+|++|++...       +...++......+.++.+.+.+..+|.++.||.|
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence            456678888888888755 89999999999999997532       2233444456789999999999999999999999


Q ss_pred             EEEeCCCCc-------eeEEeec-ccCCeEEEE-eeC--CC-eEEEEeCCCcEEEEecCCCeee---EEecCCCCeeEEE
Q 010296          287 KIWNAEDRA-------YISTLFG-HQSEVLTID-CLR--KE-RVLTVGRDRSMQLWKVPEESRL---VFRAPASSLECCC  351 (513)
Q Consensus       287 ~iwd~~~~~-------~~~~~~~-~~~~v~~~~-~~~--~~-~~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~  351 (513)
                      .+.++....       +...... ..+.+.++. +..  .. .++.+..-+.|..||++.....   ......+.|++++
T Consensus      1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred             EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence            999987621       1111111 223344433 322  23 4567778899999999876543   4445567899999


Q ss_pred             eecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE
Q 010296          352 FISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV  430 (513)
Q Consensus       352 ~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  430 (513)
                      .+|.+. +++|+..|.+.+||++-+.++..+...+                                    ..+|..++.
T Consensus      1203 idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~------------------------------------~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA------------------------------------RAPIRHVWL 1246 (1431)
T ss_pred             ecCCceEEEEecCCceEEEEEeecCceeecccCcc------------------------------------cCCcceEEe
Confidence            999886 8899999999999999999888876433                                    234777776


Q ss_pred             ecCC---CEEEEe-c-CCCcEEEEEeCCCCcceeeeeec-----------------CcccEEEEEEeecCCCEEEEEecC
Q 010296          431 CGGS---DLAASG-A-GNGSVRLWAIESETKDIQPLYNL-----------------PLVGFVNSLAFAKSGQFLIAGVGQ  488 (513)
Q Consensus       431 s~~~---~~l~~g-~-~dg~v~vwd~~~~~~~~~~~~~~-----------------~~~~~v~~v~~sp~~~~l~~~~~~  488 (513)
                      +|-.   ...+++ + ..+-|.+|++.++... ..+...                 ++.-......+..-+.++++| |.
T Consensus      1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~-~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg-gs 1324 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ-TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG-GS 1324 (1431)
T ss_pred             eccCCCCceEEEecccCCCceeeeecccCcce-EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec-CC
Confidence            6633   344444 3 5788999999887322 222211                 111122333444455677777 89


Q ss_pred             CCcccccccCCCccc
Q 010296          489 EPRLGRWGHLPAARN  503 (513)
Q Consensus       489 dg~v~~W~~~~~~~~  503 (513)
                      |+.|+.||.......
T Consensus      1325 d~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1325 DMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ccceeeccCCCcccc
Confidence            999999998776544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=7.4e-14  Score=127.64  Aligned_cols=272  Identities=11%  Similarity=0.131  Sum_probs=173.2

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ..+++..+++++|+++|.+. +..++|++..++..+.+.                     ....++++.|+|-+.+|.+-
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T~   91 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLTW   91 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEe---------------------ccceeeeeeecccccccccc
Confidence            34477889999999877665 578999999888644332                     12268999999999998762


Q ss_pred             e-----C-----CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          239 G-----L-----DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       239 ~-----~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      -     .     ...+.+|++.++.....+......-++..|+++..+.+ --..+.+++|++...+.+..- -|...|.
T Consensus        92 e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~k-l~~~~i~  169 (566)
T KOG2315|consen   92 EPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHK-LSVSGIT  169 (566)
T ss_pred             cccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceeee-eecccee
Confidence            1     1     24578999998666555544333336888888765433 222356777777653322111 1233334


Q ss_pred             EEEeeCC----------------------------------------------------C--eEEEEe--CC--------
Q 010296          309 TIDCLRK----------------------------------------------------E--RVLTVG--RD--------  324 (513)
Q Consensus       309 ~~~~~~~----------------------------------------------------~--~~~~~~--~d--------  324 (513)
                      .+.++|.                                                    +  .|+.++  -|        
T Consensus       170 ~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYG  249 (566)
T KOG2315|consen  170 MLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYG  249 (566)
T ss_pred             eEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccc
Confidence            4444332                                                    2  121111  11        


Q ss_pred             -CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe---EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCc
Q 010296          325 -RSMQLWKVPEESRLVFRAPASSLECCCFISNDE---FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGK  400 (513)
Q Consensus       325 -~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (513)
                       .+++++++............++|.++.|++.++   ++.|-.-..+.|||++ +.++..+..                 
T Consensus       250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e-----------------  311 (566)
T KOG2315|consen  250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE-----------------  311 (566)
T ss_pred             cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC-----------------
Confidence             234444444333334444567888888988885   3456677788888864 455554432                 


Q ss_pred             cccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---CcEEEEEeCCCCcceeeeeecCcccEEEEEEeec
Q 010296          401 ISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAK  477 (513)
Q Consensus       401 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp  477 (513)
                                            ++-+++-|+|.|++|+.++-+   |.|.|||+.+. +.+..+..    ..-+-+.|+|
T Consensus       312 ----------------------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a----~~tt~~eW~P  364 (566)
T KOG2315|consen  312 ----------------------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKA----ANTTVFEWSP  364 (566)
T ss_pred             ----------------------CCccceEECCCCCEEEEeecCCCCCceEEEeccch-hhcccccc----CCceEEEEcC
Confidence                                  236789999999999887744   89999999885 33333322    2245579999


Q ss_pred             CCCEEEEEecC-----CCcccccccCC
Q 010296          478 SGQFLIAGVGQ-----EPRLGRWGHLP  499 (513)
Q Consensus       478 ~~~~l~~~~~~-----dg~v~~W~~~~  499 (513)
                      ||+++++++..     |..++||+...
T Consensus       365 dGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  365 DGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             CCcEEEEEeccccEEecCCeEEEEecC
Confidence            99999999666     78899997643

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.66  E-value=1.1e-13  Score=118.21  Aligned_cols=268  Identities=14%  Similarity=0.210  Sum_probs=182.9

Q ss_pred             CCCeEEEEECCCCCeEEE-EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-
Q 010296          159 RQSVTAVALSEDDSKGFS-ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA-  236 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-  236 (513)
                      -+.|..|.|..+.-++++ ...++.|.+|++...+-...+                   .....++.++.|||+|+.++ 
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-------------------deg~agls~~~WSPdgrhiL~  108 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-------------------DEGQAGLSSISWSPDGRHILL  108 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-------------------ccCCCcceeeeECCCcceEee
Confidence            467888999998887775 567889999999876644433                   34466799999999996554 


Q ss_pred             EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC----------------------------------
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF----------------------------------  282 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------------------------------  282 (513)
                      +...+-.|.||.+.+.+.... +-....+..++|+|+|++.+.++.                                  
T Consensus       109 tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs  187 (447)
T KOG4497|consen  109 TSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS  187 (447)
T ss_pred             eecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC
Confidence            566688999999988765433 223445688999999988776653                                  


Q ss_pred             --CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee---------------------
Q 010296          283 --DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL---------------------  338 (513)
Q Consensus       283 --dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~---------------------  338 (513)
                        +..+.+||---.-.+..+ ...-.+..+.|+|.++|+ +|+.|+.+++.+--+-+..                     
T Consensus       188 Pdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~  266 (447)
T KOG4497|consen  188 PDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKET  266 (447)
T ss_pred             CCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhh
Confidence              123344442211111111 123468889999988766 7788998887542111000                     


Q ss_pred             -----------E-----------------------------------EecCCCCeeEEEeecCCeEEEEeCC---CCEEE
Q 010296          339 -----------V-----------------------------------FRAPASSLECCCFISNDEFLSGSDD---GSIEL  369 (513)
Q Consensus       339 -----------~-----------------------------------~~~~~~~v~~~~~~~~~~~~~~~~d---g~i~i  369 (513)
                                 .                                   +..+..++..++|+++..+++.-.|   ..+-+
T Consensus       267 ~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~  346 (447)
T KOG4497|consen  267 FSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWL  346 (447)
T ss_pred             cchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEE
Confidence                       0                                   0011234566889999887755544   46889


Q ss_pred             EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296          370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW  449 (513)
Q Consensus       370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw  449 (513)
                      ||++..+....+...++                                      |....|.|....|+.+.....+++|
T Consensus       347 Wdlq~l~l~avLiQk~p--------------------------------------iraf~WdP~~prL~vctg~srLY~W  388 (447)
T KOG4497|consen  347 WDLQNLKLHAVLIQKHP--------------------------------------IRAFEWDPGRPRLVVCTGKSRLYFW  388 (447)
T ss_pred             Eechhhhhhhhhhhccc--------------------------------------eeEEEeCCCCceEEEEcCCceEEEE
Confidence            99988776665554444                                      9999999999888888777789999


Q ss_pred             EeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCC
Q 010296          450 AIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEP  490 (513)
Q Consensus       450 d~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg  490 (513)
                      .....    .........-.|..+.|.-+|.+|+.. +.|.
T Consensus       389 ~psg~----~~V~vP~~GF~i~~l~W~~~g~~i~l~-~kDa  424 (447)
T KOG4497|consen  389 APSGP----RVVGVPKKGFNIQKLQWLQPGEFIVLC-GKDA  424 (447)
T ss_pred             cCCCc----eEEecCCCCceeeeEEecCCCcEEEEE-cCCc
Confidence            87653    222222234569999999999999988 7764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.1e-13  Score=134.24  Aligned_cols=232  Identities=9%  Similarity=-0.015  Sum_probs=152.8

Q ss_pred             ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCcceeee
Q 010296          181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL---DRHIHLWDTRIQEHIQA  257 (513)
Q Consensus       181 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~  257 (513)
                      ..|.+||........                    +..|...+.+.+|+|+|+.|+..+.   +..|++|++.+++.. .
T Consensus       182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~  240 (435)
T PRK05137        182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-L  240 (435)
T ss_pred             eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-E
Confidence            478888876543322                    2456778999999999999888764   468999999888653 3


Q ss_pred             ccCcCCCeEEEEEecCCCeEE-EEeCCCc--EEEEeCCCCceeEEeecccCCeEEEEeeCCCe-EEEEe-CC--CcEEEE
Q 010296          258 FPGHRGPVSCLTFRQGTSELF-SGSFDRT--VKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-VLTVG-RD--RSMQLW  330 (513)
Q Consensus       258 ~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d--~~i~iw  330 (513)
                      +..+.+.+.+..|+|+|+.|+ +.+.++.  |++||+.++.. ..+..+........|+|++. ++.++ ..  ..|++|
T Consensus       241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~  319 (435)
T PRK05137        241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM  319 (435)
T ss_pred             eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence            444666778899999999876 5555554  78889987765 44555666677889999985 44444 23  368888


Q ss_pred             ecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeC-C--CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296          331 KVPEESRLVFRAPASSLECCCFISNDE-FLSGSD-D--GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS  406 (513)
Q Consensus       331 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  406 (513)
                      ++.++....+......+....|+|+|. ++..+. .  ..|.+|++.++.. ..+....                     
T Consensus       320 d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~---------------------  377 (435)
T PRK05137        320 NADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF---------------------  377 (435)
T ss_pred             ECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCC---------------------
Confidence            887765554444445566788999996 444333 2  3577788755432 2221110                     


Q ss_pred             CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC------CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296          407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN------GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS  478 (513)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d------g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~  478 (513)
                                       .+..+.|+|+|++|+..+.+      ..|+++++..+.  ...+.   ..+.+...+|+|-
T Consensus       378 -----------------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~--~~~l~---~~~~~~~p~Wsp~  433 (435)
T PRK05137        378 -----------------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN--EREVP---TPGDASDPAWSPL  433 (435)
T ss_pred             -----------------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc--eEEcc---CCCCccCcccCCC
Confidence                             15678899999988765532      257777776542  22222   2344667778763

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.64  E-value=9.1e-13  Score=123.37  Aligned_cols=247  Identities=10%  Similarity=0.160  Sum_probs=166.5

Q ss_pred             ccEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCc--c--eeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeC
Q 010296          221 KHILALAVSSDGRYLASGGL----DRHIHLWDTRIQ--E--HIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNA  291 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~----dg~i~vwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~  291 (513)
                      .....|+++|++++|++...    .+.|..|.+...  .  .+............++++|++++|+++. .+|.|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34667899999999999876    468999987653  2  3333433445567899999999998876 5899999999


Q ss_pred             CC-CceeEE---ee----------cccCCeEEEEeeCCCeEE-EEe-CCCcEEEEecCCCe--ee----EEecCCCCeeE
Q 010296          292 ED-RAYIST---LF----------GHQSEVLTIDCLRKERVL-TVG-RDRSMQLWKVPEES--RL----VFRAPASSLEC  349 (513)
Q Consensus       292 ~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~-~~~-~d~~i~iwd~~~~~--~~----~~~~~~~~v~~  349 (513)
                      .. +.....   +.          .......++.++|+++++ +.. ....|.+|++....  ..    ...........
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            87 333222   11          123456789999998655 433 35689999997654  21    23455677889


Q ss_pred             EEeecCCe--EEEEeCCCCEEEEecC--CCC--eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcc
Q 010296          350 CCFISNDE--FLSGSDDGSIELWSLL--RKK--PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYS  423 (513)
Q Consensus       350 ~~~~~~~~--~~~~~~dg~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  423 (513)
                      +.|+|++.  +++.-.++.|.+|++.  ++.  .+..+......                               .....
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~-------------------------------~~~~~  245 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG-------------------------------FTGEN  245 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT-------------------------------SCSSS
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc-------------------------------ccccC
Confidence            99999986  4577778999999988  332  22222211000                               01112


Q ss_pred             eEEEEEEecCCCEEEEec-CCCcEEEEEeCCCCcceeeeeecCc-ccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          424 WVSSVTVCGGSDLAASGA-GNGSVRLWAIESETKDIQPLYNLPL-VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       424 ~i~~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      ....|+++|+|++|+++. ..+.|.+|++......+..+...+. ....+.++|+|+|++|+++...++.|.+|++.
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            388999999999988765 5678999999544345555554443 33478999999999999998888999999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=3.5e-15  Score=135.21  Aligned_cols=156  Identities=22%  Similarity=0.315  Sum_probs=122.9

Q ss_pred             CCCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCcccc----ccCCChhhhc-----cCCCCCCCCCCCCCcccEEEEEE
Q 010296          159 RQSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVK----YLWPSEEVLK-----SHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       159 ~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      +..|+|+.|-|.+. .++.+-.+|.+.+||........    .+......+.     ......|......-...|..++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            47899999999655 44566789999999863211110    0111111111     11112455555555678999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      +|||++||+.+.||.++|+|..+.+++..++..-+...|++|+|||++|++|+.|-.|.||.+..++.+..-.+|...|.
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs  378 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS  378 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence            99999999999999999999999998888888888999999999999999999999999999999999999999999999


Q ss_pred             EEEeeC
Q 010296          309 TIDCLR  314 (513)
Q Consensus       309 ~~~~~~  314 (513)
                      .++|.|
T Consensus       379 ~VaFDp  384 (636)
T KOG2394|consen  379 VVAFDP  384 (636)
T ss_pred             eEeecc
Confidence            999986

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.63  E-value=3.4e-14  Score=121.90  Aligned_cols=271  Identities=14%  Similarity=0.219  Sum_probs=177.4

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCcc-ccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC--E
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKG-VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR--Y  234 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~  234 (513)
                      -..-|.+|.|...|.+||||..+|.|.+|.-..... ...+.   ....++....--.....-...|..+.|.++++  .
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~---t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~  100 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQ---TEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE  100 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeee---eeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence            356799999999999999999999999997543322 10000   00111110000000112245688999998654  5


Q ss_pred             EEEEeCCCcEEEEeCCCccee-----------------------------------eec-cCcCCCeEEEEEecCCCeEE
Q 010296          235 LASGGLDRHIHLWDTRIQEHI-----------------------------------QAF-PGHRGPVSCLTFRQGTSELF  278 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~~-----------------------------------~~~-~~~~~~v~~~~~~~~~~~l~  278 (513)
                      ++..+.|.+|++|.+......                                   +.+ .+|.-.|+++.++.|...++
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l  180 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL  180 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence            777778999999986532110                                   011 25788899999999988888


Q ss_pred             EEeCCCcEEEEeCCCCce---eEEeecc-----cCCeEEEEeeCC--CeEEEEeCCCcEEEEecCCCeee-----EE---
Q 010296          279 SGSFDRTVKIWNAEDRAY---ISTLFGH-----QSEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEESRL-----VF---  340 (513)
Q Consensus       279 ~~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~-----~~---  340 (513)
                      ++. |=.|.+|++.-...   +.-++++     ..-|++..|+|.  +.|+..++.|+|++.|++.....     .+   
T Consensus       181 SAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  181 SAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             ecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence            774 67899999864322   2222222     235788889994  56778889999999999843221     11   


Q ss_pred             ---------ecCCCCeeEEEeecCCeEEEEeCCCCEEEEec-CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCC
Q 010296          341 ---------RAPASSLECCCFISNDEFLSGSDDGSIELWSL-LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN  410 (513)
Q Consensus       341 ---------~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  410 (513)
                               ..-...|..+.|++.|+++..-.--+|++||+ ...+|+.+++.+......+..+-.++..+         
T Consensus       260 edp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If---------  330 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF---------  330 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh---------
Confidence                     12235677899999999877777789999999 55677777765443322222211111111         


Q ss_pred             CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          411 LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       411 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                   .-..++|+.++.+++||+..+.+++|++..+
T Consensus       331 -------------dKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  331 -------------DKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             -------------heeEEEEcCCcceEecccccceEEEecCCCC
Confidence                         0456889999999999999999999996654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.1e-13  Score=133.88  Aligned_cols=232  Identities=14%  Similarity=0.068  Sum_probs=150.6

Q ss_pred             ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcceeee
Q 010296          181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRIQEHIQA  257 (513)
Q Consensus       181 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~  257 (513)
                      ..|.+||....... .                   +..+...+.+.+|+|+|+.|+..+..   ..|++|++.+++... 
T Consensus       184 ~~l~i~D~~g~~~~-~-------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-  242 (433)
T PRK04922        184 YALQVADSDGYNPQ-T-------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-  242 (433)
T ss_pred             EEEEEECCCCCCce-E-------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence            46889998654322 1                   23456678999999999999987743   469999998876543 


Q ss_pred             ccCcCCCeEEEEEecCCCeEE-EEeCCC--cEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-EEEEe-CCCc--EEEE
Q 010296          258 FPGHRGPVSCLTFRQGTSELF-SGSFDR--TVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-VLTVG-RDRS--MQLW  330 (513)
Q Consensus       258 ~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~--i~iw  330 (513)
                      +..+.+...++.|+|+|+.|+ +.+.+|  .|++||+.+++.. .+..+........|+|+++ ++.++ ..+.  |+++
T Consensus       243 l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~  321 (433)
T PRK04922        243 VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRV  321 (433)
T ss_pred             eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            333444556789999999876 445555  5999999887643 4444555567789999986 44444 3444  7777


Q ss_pred             ecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeC-CC--CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296          331 KVPEESRLVFRAPASSLECCCFISNDE-FLSGSD-DG--SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS  406 (513)
Q Consensus       331 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  406 (513)
                      ++.++....+..........+|+|+|. ++..+. ++  .|.+|++.+++.. .+....                     
T Consensus       322 dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~---------------------  379 (433)
T PRK04922        322 AASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS---------------------  379 (433)
T ss_pred             ECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC---------------------
Confidence            776665443333333445689999996 443332 22  5899999877654 222110                     


Q ss_pred             CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---CcEEEEEeCCCCcceeeeeecCcccEEEEEEeec
Q 010296          407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAK  477 (513)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp  477 (513)
                                       ......|+|+|++|+..+.+   +.|.++++...  ....+..  +.+.+...+|+|
T Consensus       380 -----------------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--~~~~l~~--~~g~~~~p~wsp  432 (433)
T PRK04922        380 -----------------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--VRQRLVS--ADGEVREPAWSP  432 (433)
T ss_pred             -----------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEEccc--CCCCCCCCccCC
Confidence                             13456899999988776643   35777777543  2233322  345677778876

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=9.6e-15  Score=130.87  Aligned_cols=254  Identities=15%  Similarity=0.177  Sum_probs=185.3

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEEecC--CCeEEEEeCCCcEEEEeC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQG--TSELFSGSFDRTVKIWNA  291 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~  291 (513)
                      .+..|.+.|..|.|...|..|++|+.|..|.+||+..+.....+. +|...|....|-|.  ...+++++.||.|++=.+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            357899999999999999999999999999999999988876664 59889988889884  467999999999998876


Q ss_pred             CCCce---eEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee----EEecCCC---CeeEEEeecCC--e
Q 010296          292 EDRAY---ISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL----VFRAPAS---SLECCCFISND--E  357 (513)
Q Consensus       292 ~~~~~---~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~----~~~~~~~---~v~~~~~~~~~--~  357 (513)
                      .....   ...+..|.++|..++.-|+.  .|++++.|+.+.-+|++.....    .......   ....++..|..  .
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence            54332   34566799999999998865  6889999999999999876443    2222223   46677888765  4


Q ss_pred             EEEEeCCCCEEEEecCCCCe------eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe
Q 010296          358 FLSGSDDGSIELWSLLRKKP------VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC  431 (513)
Q Consensus       358 ~~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  431 (513)
                      |++|+.|..+++||.+.-..      +..+...|-.                               ......|++++|+
T Consensus       297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~-------------------------------~d~~v~ITgl~Ys  345 (559)
T KOG1334|consen  297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV-------------------------------EDDPVNITGLVYS  345 (559)
T ss_pred             cccCChhhhhhhhcccchhhccccchhhhcCCcccc-------------------------------ccCcccceeEEec
Confidence            88999999999999875321      1112111110                               1222339999999


Q ss_pred             cCCCEEEEecCCCcEEEEEeCCCCc-----------ceee-eeecCcccEEEEEEee-cCCCEEEEEecCCCcccccccC
Q 010296          432 GGSDLAASGAGNGSVRLWAIESETK-----------DIQP-LYNLPLVGFVNSLAFA-KSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       432 ~~~~~l~~g~~dg~v~vwd~~~~~~-----------~~~~-~~~~~~~~~v~~v~~s-p~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .++.-|.++-.|-.|+++.-.-+..           ..+. ++.......|..|-|- |...|+++| ++=|.|.||+..
T Consensus       346 h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSG-SDCGhIFiW~K~  424 (559)
T KOG1334|consen  346 HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSG-SDCGHIFIWDKK  424 (559)
T ss_pred             CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEec-CccceEEEEecc
Confidence            8877777777777899995432211           1111 2222224457788764 888999888 888999999876


Q ss_pred             CC
Q 010296          499 PA  500 (513)
Q Consensus       499 ~~  500 (513)
                      .+
T Consensus       425 t~  426 (559)
T KOG1334|consen  425 TG  426 (559)
T ss_pred             hh
Confidence            54

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=9.4e-13  Score=113.98  Aligned_cols=167  Identities=16%  Similarity=0.197  Sum_probs=115.5

Q ss_pred             CCCeEEEEECCCC-CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          159 RQSVTAVALSEDD-SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       159 ~~~V~~~~~s~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      ...|+|++|-|.+ +-|+.|+. +-|.||.............     .............+| .+|++|.|.+||..|++
T Consensus       140 QrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~-----~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~t  212 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIR-----MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVT  212 (445)
T ss_pred             hcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccc-----cccccchhheeCCCC-ceeeEEEEcCCCCEEee
Confidence            5679999999964 55667776 5589998764322211000     000001111123345 78999999999999999


Q ss_pred             EeC-CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC
Q 010296          238 GGL-DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE  316 (513)
Q Consensus       238 ~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  316 (513)
                      ++. +..|+|||..++..+.......+.++-+.|+|++.+|++++-|+..++|+....-.........+.|...+|+|.|
T Consensus       213 AS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcG  292 (445)
T KOG2139|consen  213 ASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCG  292 (445)
T ss_pred             cccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCC
Confidence            885 5789999999998776665567789999999999999999999999999765443333333345689999999999


Q ss_pred             eEEEEeCCCcEEEEec
Q 010296          317 RVLTVGRDRSMQLWKV  332 (513)
Q Consensus       317 ~~~~~~~d~~i~iwd~  332 (513)
                      +++.-...+.-.+|.+
T Consensus       293 sfLLf~~sgsp~lysl  308 (445)
T KOG2139|consen  293 SFLLFACSGSPRLYSL  308 (445)
T ss_pred             CEEEEEEcCCceEEEE
Confidence            6653333344444443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=2.2e-13  Score=119.10  Aligned_cols=266  Identities=12%  Similarity=0.139  Sum_probs=186.4

Q ss_pred             ccCCCeEEEEECCCCC--eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296          157 KHRQSVTAVALSEDDS--KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY  234 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~--~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  234 (513)
                      .-...|+.++|.-+++  .|..++.+..+..+.+........++.             .........+|..++..  ...
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~-------------~~~~~l~~~~I~gl~~~--dg~  117 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDD-------------AKTVSLGTKSIKGLKLA--DGT  117 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccc-------------ccccccccccccchhhc--CCE
Confidence            3456788888876554  444555677777777776655443211             01123445667777665  346


Q ss_pred             EEEEeCCCcEEEEeCCCcc----eeeeccCcCCCeEEEEEecCCCeEE-EEeCC--CcEEEEeCCCCceeEEeecc----
Q 010296          235 LASGGLDRHIHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGTSELF-SGSFD--RTVKIWNAEDRAYISTLFGH----  303 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d--g~i~iwd~~~~~~~~~~~~~----  303 (513)
                      |++|-.+|.+.+|....+.    .+..+..+ .++..|.-++...+++ +|+..  ..+.|||+.+.+.+..-+.-    
T Consensus       118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~  196 (412)
T KOG3881|consen  118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR  196 (412)
T ss_pred             EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence            7788889999999987443    22233322 4566666666655554 58888  88999999988666554322    


Q ss_pred             -----cCCeEEEEeeCC---CeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296          304 -----QSEVLTIDCLRK---ERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL  372 (513)
Q Consensus       304 -----~~~v~~~~~~~~---~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~  372 (513)
                           +-.++.+.|.++   ..|++++.-+.|++||.+.+...  .+.....+++++...|.+. +++|..-|.+..||+
T Consensus       197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~  276 (412)
T KOG3881|consen  197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDL  276 (412)
T ss_pred             ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecc
Confidence                 123567778765   47889999999999999876543  5666678999999999987 669999999999999


Q ss_pred             CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                      ++++.+....                                    .+..+.|.++..+|.+++|++++-|..|||+|+.
T Consensus       277 r~~kl~g~~~------------------------------------kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  277 RGGKLLGCGL------------------------------------KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             cCceeecccc------------------------------------CCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence            9998776622                                    2222339999999999999999999999999999


Q ss_pred             CCCcceeeeeecCcccEEEEEEeecC
Q 010296          453 SETKDIQPLYNLPLVGFVNSLAFAKS  478 (513)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~v~~sp~  478 (513)
                      +. +++...+   ....++++-+.++
T Consensus       321 tr-kll~kvY---vKs~lt~il~~~~  342 (412)
T KOG3881|consen  321 TR-KLLHKVY---VKSRLTFILLRDD  342 (412)
T ss_pred             cc-hhhhhhh---hhccccEEEecCC
Confidence            85 3333333   3566777777655

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=4.5e-13  Score=129.21  Aligned_cols=216  Identities=14%  Similarity=0.083  Sum_probs=136.2

Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEE--eC
Q 010296          218 KQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIW--NA  291 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw--d~  291 (513)
                      .+...+.+.+|+|+|+.|+..+..   ..|.+||+.+++... +....+.+.+..|+|+|+.|+ +.+.+|...||  |+
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence            456678999999999999887643   459999999887543 333345567899999999886 56677775555  45


Q ss_pred             CCCceeEEeecccCCeEEEEeeCCCe-EEEEe-CCCcEEEEec--CCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCC-
Q 010296          292 EDRAYISTLFGHQSEVLTIDCLRKER-VLTVG-RDRSMQLWKV--PEESRLVFRAPASSLECCCFISNDE-FLSGSDDG-  365 (513)
Q Consensus       292 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg-  365 (513)
                      .++. ...+..+........|+|+|+ ++.++ ..+...+|.+  .++................|+|+|. ++..+.++ 
T Consensus       272 ~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g  350 (427)
T PRK02889        272 DGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG  350 (427)
T ss_pred             CCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence            4444 445554555567788999985 44444 3455666654  4443332222233344678999996 44444333 


Q ss_pred             --CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC
Q 010296          366 --SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN  443 (513)
Q Consensus       366 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  443 (513)
                        .|.+||+.+++...... .                                      .......|+|+|++|+.++.+
T Consensus       351 ~~~I~v~d~~~g~~~~lt~-~--------------------------------------~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        351 AFKLYVQDLATGQVTALTD-T--------------------------------------TRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             cEEEEEEECCCCCeEEccC-C--------------------------------------CCccCceECCCCCEEEEEEec
Confidence              59999998876432211 0                                      013467899999988877654


Q ss_pred             C-c--EEEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296          444 G-S--VRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS  478 (513)
Q Consensus       444 g-~--v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~  478 (513)
                      + .  +.+.++..  .....+..  +.+.+...+|+|-
T Consensus       392 ~g~~~l~~~~~~g--~~~~~l~~--~~g~~~~p~wsp~  425 (427)
T PRK02889        392 GGRSVLAAVSSDG--RIKQRLSV--QGGDVREPSWGPF  425 (427)
T ss_pred             CCCEEEEEEECCC--CceEEeec--CCCCCCCCccCCC
Confidence            3 3  44545532  22222322  4466777888874

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.59  E-value=1.2e-11  Score=112.50  Aligned_cols=264  Identities=13%  Similarity=0.048  Sum_probs=166.1

Q ss_pred             ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC----------CCcEEEEeCC
Q 010296          181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL----------DRHIHLWDTR  250 (513)
Q Consensus       181 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----------dg~i~vwd~~  250 (513)
                      ++|.+.|..+++.+..+.                  .+..  -..+ +||+++.|+++..          +..|.+||+.
T Consensus        27 ~~v~ViD~~~~~v~g~i~------------------~G~~--P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~   85 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTD------------------GGFL--PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ   85 (352)
T ss_pred             ceEEEEECCCCEEEEEEE------------------ccCC--Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence            899999999988877651                  1111  1224 9999998887765          6899999999


Q ss_pred             CcceeeeccCc-------CCCeEEEEEecCCCeEEEEe-C-CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEE
Q 010296          251 IQEHIQAFPGH-------RGPVSCLTFRQGTSELFSGS-F-DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTV  321 (513)
Q Consensus       251 ~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  321 (513)
                      +.+.+..+...       ......++++|+|++|++.. . +..|.++|+.+++.+..+.-. +. ..+-..+...+.+.
T Consensus        86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~-~~vy~t~e~~~~~~  163 (352)
T TIGR02658        86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DC-YHIFPTANDTFFMH  163 (352)
T ss_pred             cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CC-cEEEEecCCccEEE
Confidence            99999887642       22334789999999999766 3 789999999999998877642 21 12222223333344


Q ss_pred             eCCCcEEEEecCCCeee------EEecCCCCeeE-EEeec-CCeEEEEeCCCCEEEEecCCCCeeE-----EeecCCCcc
Q 010296          322 GRDRSMQLWKVPEESRL------VFRAPASSLEC-CCFIS-NDEFLSGSDDGSIELWSLLRKKPVY-----IVKNAHPLL  388 (513)
Q Consensus       322 ~~d~~i~iwd~~~~~~~------~~~~~~~~v~~-~~~~~-~~~~~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~  388 (513)
                      +.||......+......      .+.....++.. -.+.+ +|..+-.+..|+|.+.|+.......     .+...... 
T Consensus       164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~-  242 (352)
T TIGR02658       164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKA-  242 (352)
T ss_pred             eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccc-
Confidence            45555544333221111      11110000000 03344 6664444444999999975543222     21111000 


Q ss_pred             cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec----------CCCcEEEEEeCCCCcce
Q 010296          389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA----------GNGSVRLWAIESETKDI  458 (513)
Q Consensus       389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~----------~dg~v~vwd~~~~~~~~  458 (513)
                                          .         .-....+.-++++|+++.|++..          ..+.|.++|..+.    
T Consensus       243 --------------------~---------~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----  289 (352)
T TIGR02658       243 --------------------D---------GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----  289 (352)
T ss_pred             --------------------c---------ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----
Confidence                                0         01122245599999999888743          2247999999887    


Q ss_pred             eeeeecCcccEEEEEEeecCCC-EEEEEecCCCcccccccCCCc
Q 010296          459 QPLYNLPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       459 ~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      +.+..++....+..++|+||++ +|+++...++.|.+.|.....
T Consensus       290 kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       290 KRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             eEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence            3344444566799999999999 888886688999999987664

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=5.8e-13  Score=128.28  Aligned_cols=205  Identities=17%  Similarity=0.067  Sum_probs=135.5

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEe---CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSAS---KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      +.+..+...+.+.+|||||+.|+..+   .+..|.+|++.+++.....                    .....+..++|+
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--------------------~~~~~~~~~~~S  251 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------------------SFPRHNGAPAFS  251 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--------------------CCCCCcCCeEEC
Confidence            44555677899999999999998654   2457999999887543211                    112234568999


Q ss_pred             CCCCEEEEE-eCCC--cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC-C--cEEEEeCCCCceeEEeecc
Q 010296          230 SDGRYLASG-GLDR--HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD-R--TVKIWNAEDRAYISTLFGH  303 (513)
Q Consensus       230 ~~~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~  303 (513)
                      |+|+.|+.. +.+|  .|++||+.+++..... .+...+....|+|+|+.|+..+.. +  .|+++++.++.. ..+...
T Consensus       252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~  329 (429)
T PRK03629        252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE  329 (429)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC
Confidence            999988865 3344  5899999888765443 344567889999999988766653 4  455557766644 333334


Q ss_pred             cCCeEEEEeeCCCeEE-EEeCC---CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCC---EEEEecCCC
Q 010296          304 QSEVLTIDCLRKERVL-TVGRD---RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGS---IELWSLLRK  375 (513)
Q Consensus       304 ~~~v~~~~~~~~~~~~-~~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~---i~iwd~~~~  375 (513)
                      ........|+|+|..+ ..+.+   ..|.+||+.++....+... .......|+|+|. ++.++.++.   +.++++. +
T Consensus       330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G  407 (429)
T PRK03629        330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-G  407 (429)
T ss_pred             CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-C
Confidence            4455678899998544 44432   4588899987765544432 2344678999996 556665554   6667763 4


Q ss_pred             CeeEEe
Q 010296          376 KPVYIV  381 (513)
Q Consensus       376 ~~~~~~  381 (513)
                      .....+
T Consensus       408 ~~~~~l  413 (429)
T PRK03629        408 RFKARL  413 (429)
T ss_pred             CCeEEC
Confidence            444444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.58  E-value=7.3e-13  Score=129.78  Aligned_cols=202  Identities=21%  Similarity=0.330  Sum_probs=160.4

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      .-.+.|....+.-....++.++.+..+.+||...+.....+.....               .......-+-++++.-+++
T Consensus        85 ~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er---------------~~l~~~~~~g~s~~~~~i~  149 (967)
T KOG0974|consen   85 RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER---------------CTLYSSLIIGDSAEELYIA  149 (967)
T ss_pred             hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCce---------------EEEEeEEEEeccCcEEEEE
Confidence            3455566667777788899999999999999988776654411111               0111233344567777999


Q ss_pred             EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE-EeecccCCeEEEEeeCC
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS-TLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~  315 (513)
                      +|+.-+.|.+|+....+.-..+.+|.+.|.++.|+-+|++++++|.|.++++|.+.+.+... +..+|+..|+.+.+.|.
T Consensus       150 ~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n  229 (967)
T KOG0974|consen  150 SGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN  229 (967)
T ss_pred             eccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc
Confidence            99999999999987444444688999999999999999999999999999999999988766 66789999999999998


Q ss_pred             CeEEEEeCCCcEEEEecCCCeeeEEecCC-CCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296          316 ERVLTVGRDRSMQLWKVPEESRLVFRAPA-SSLECCCFISNDE-FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       316 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~  374 (513)
                       ++++++.|.++++|.........+..|. ..+..++..++.. .++++.|+.+++|++..
T Consensus       230 -~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  230 -RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             -eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence             9999999999999977666555555554 4678888888775 67999999999999865

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=1.4e-12  Score=121.63  Aligned_cols=280  Identities=14%  Similarity=0.089  Sum_probs=168.4

Q ss_pred             CeE-EEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296          172 SKG-FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR  250 (513)
Q Consensus       172 ~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~  250 (513)
                      +++ ++-..++.|.|.|..+.+.+..+                   ......-..+.|+|||+++++++.||.|.++|+.
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i-------------------~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~   66 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARI-------------------PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA   66 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEE-------------------E-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEE-------------------cCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC
Confidence            344 45567899999999998888765                   1222223457899999999999999999999999


Q ss_pred             CcceeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCCCCceeEEeecc-------cCCeEEEEeeCCCe-EEEE
Q 010296          251 IQEHIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAEDRAYISTLFGH-------QSEVLTIDCLRKER-VLTV  321 (513)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~-~~~~  321 (513)
                      +++.+.+++.. ....+++++++|++++++. ..+.|.++|..+.+.+..+...       ...+.++..++... +++.
T Consensus        67 ~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~  145 (369)
T PF02239_consen   67 TGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN  145 (369)
T ss_dssp             SSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred             cccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence            99999998854 4568899999999988664 6899999999999988877532       33567777777654 5555


Q ss_pred             eC-CCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-E-EEEeCCCCEEEEecCCCCeeEEeecCCCcccC-CCCcc
Q 010296          322 GR-DRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-F-LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDG-LKNFE  395 (513)
Q Consensus       322 ~~-d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~  395 (513)
                      -. .+.|.+.|.......  .............|.|+++ | ++......|-++|..+++.+..+......... ...+.
T Consensus       146 lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p  225 (369)
T PF02239_consen  146 LKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP  225 (369)
T ss_dssp             ETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE
T ss_pred             EccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccccc
Confidence            44 588888887665433  3444556677889999986 3 34566779999999999887776543211000 00000


Q ss_pred             cCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEe
Q 010296          396 QDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAF  475 (513)
Q Consensus       396 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~  475 (513)
                                             ....++++..  ...+...++.-....+.+|+..+. +.++.+..  ..++ .-+.-
T Consensus       226 -----------------------hp~~g~vw~~--~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I~~--~G~g-lFi~t  276 (369)
T PF02239_consen  226 -----------------------HPGFGPVWAT--SGLGYFAIPLIGTDPVSVHDDYAW-KVVKTIPT--QGGG-LFIKT  276 (369)
T ss_dssp             -----------------------ETTTEEEEEE--EBSSSSEEEEEE--TTT-STTTBT-SEEEEEE---SSSS---EE-
T ss_pred             -----------------------CCCcceEEee--ccccceecccccCCccccchhhcC-eEEEEEEC--CCCc-ceeec
Confidence                                   0011112221  222333323223335667777766 33444433  2233 66788


Q ss_pred             ecCCCEEEEE---ecCCCcccccccCCC
Q 010296          476 AKSGQFLIAG---VGQEPRLGRWGHLPA  500 (513)
Q Consensus       476 sp~~~~l~~~---~~~dg~v~~W~~~~~  500 (513)
                      +|++++|.+.   ..+...|.++|..+-
T Consensus       277 hP~s~~vwvd~~~~~~~~~v~viD~~tl  304 (369)
T PF02239_consen  277 HPDSRYVWVDTFLNPDADTVQVIDKKTL  304 (369)
T ss_dssp             -TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred             CCCCccEEeeccCCCCCceEEEEECcCc
Confidence            9999999988   555689999988765

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.1e-12  Score=127.24  Aligned_cols=213  Identities=11%  Similarity=0.039  Sum_probs=143.6

Q ss_pred             CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC---CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-
Q 010296          242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-  317 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-  317 (513)
                      ..|.+||... .....+..|...+.+.+|+|+|+.|+..+.   +..|++||+.+++.. .+..+.+.+....|+|+|. 
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            4788999754 444556668889999999999999887653   468999999887653 3445666778899999985 


Q ss_pred             EE-EEeCCCc--EEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCC--CEEEEecCCCCeeEEeecCCCcccC
Q 010296          318 VL-TVGRDRS--MQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDG--SIELWSLLRKKPVYIVKNAHPLLDG  390 (513)
Q Consensus       318 ~~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~  390 (513)
                      ++ +.+.++.  |++||+.++....+..+........|+|+|. ++..+ .+|  .|++|++.++........       
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-------  332 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-------  332 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-------
Confidence            44 4445544  7788988877666555555566789999996 55443 333  577788766554332211       


Q ss_pred             CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---CcEEEEEeCCCCcceeeeeecCcc
Q 010296          391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---GSVRLWAIESETKDIQPLYNLPLV  467 (513)
Q Consensus       391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~v~vwd~~~~~~~~~~~~~~~~~  467 (513)
                                                     ...+....|+|+|++|+..+.+   ..|.+|++..+.  ...+.   ..
T Consensus       333 -------------------------------~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~--~~~lt---~~  376 (435)
T PRK05137        333 -------------------------------GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG--ERILT---SG  376 (435)
T ss_pred             -------------------------------CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc--eEecc---CC
Confidence                                           1115567899999999876543   368888875542  22222   22


Q ss_pred             cEEEEEEeecCCCEEEEEecCCC-----cccccccCC
Q 010296          468 GFVNSLAFAKSGQFLIAGVGQEP-----RLGRWGHLP  499 (513)
Q Consensus       468 ~~v~~v~~sp~~~~l~~~~~~dg-----~v~~W~~~~  499 (513)
                      ..+..+.|+|||++|+..+...+     .|.+.+...
T Consensus       377 ~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        377 FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence            34677899999999887744443     345555543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=6e-13  Score=121.92  Aligned_cols=253  Identities=16%  Similarity=0.177  Sum_probs=172.9

Q ss_pred             CCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296          217 TKQSKHILALAVSSDGRYL-ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      ..|....+.|..+|||+|+ |+|.+-..|++||+....+...-......|.-.-++.|-..++.-..|.+|-+.......
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h  127 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH  127 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence            4677788999999999985 567788999999997655432222223345555556555556666667777765532221


Q ss_pred             eeEEeecccCCeEEEEeeC-CCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296          296 YISTLFGHQSEVLTIDCLR-KERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL  372 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~  372 (513)
                      .-..   .+..-..++++. ..-+++++....|+-+++..+..+ .+......++++.+++... |++|+.+|.|..||.
T Consensus       128 y~~R---IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  128 YRTR---IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP  204 (703)
T ss_pred             eeee---cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence            1111   222334566654 446788888889999999988876 3444557889999988765 668888999999999


Q ss_pred             CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                      +....+.++........                          .........|+++.|+.+|-.+++|+..|.|.|||++
T Consensus       205 R~ksrv~~l~~~~~v~s--------------------------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR  258 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNS--------------------------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR  258 (703)
T ss_pred             hhhhhheeeecccccCC--------------------------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence            99887777654332100                          0001122339999999999999999999999999999


Q ss_pred             CCCcceeeeeecCcccEEEEEEeecCC--CEEEEEecCCCcccccccCCCcc
Q 010296          453 SETKDIQPLYNLPLVGFVNSLAFAKSG--QFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      +....  ........-+|..+.|.+.+  ..|++  .+...++||+-..+..
T Consensus       259 a~~pl--~~kdh~~e~pi~~l~~~~~~~q~~v~S--~Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  259 ASKPL--LVKDHGYELPIKKLDWQDTDQQNKVVS--MDKRILKIWDECTGKP  306 (703)
T ss_pred             cCCce--eecccCCccceeeecccccCCCceEEe--cchHHhhhcccccCCc
Confidence            87322  22232346689999998763  34444  4667999999877654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.56  E-value=4.3e-11  Score=104.53  Aligned_cols=276  Identities=12%  Similarity=0.176  Sum_probs=188.3

Q ss_pred             CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCC--cce
Q 010296          180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRI--QEH  254 (513)
Q Consensus       180 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~--~~~  254 (513)
                      +.-|.+|++.+.......                .....+...++-|+|+|++++|.++..+   |.|..|.+..  |+.
T Consensus        15 s~gI~v~~ld~~~g~l~~----------------~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L   78 (346)
T COG2706          15 SQGIYVFNLDTKTGELSL----------------LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL   78 (346)
T ss_pred             CCceEEEEEeCcccccch----------------hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE
Confidence            467999998844322211                0123456778999999999999988654   6777777654  443


Q ss_pred             --eeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCC-Ccee--EEeecccCC----------eEEEEeeCCCeE
Q 010296          255 --IQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAED-RAYI--STLFGHQSE----------VLTIDCLRKERV  318 (513)
Q Consensus       255 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~  318 (513)
                        +........+-+.+++++++++|+++.. -|.|.++-++. |...  ..+..|.+.          +.+..+.|++++
T Consensus        79 t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~  158 (346)
T COG2706          79 TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY  158 (346)
T ss_pred             EEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence              2222223334488999999999987754 68899999865 3321  112224444          778889999966


Q ss_pred             EEEeC--CCcEEEEecCCCeee----EEecCCCCeeEEEeecCCeEE--EEeCCCCEEEEecCCC-CeeEEeecCCCccc
Q 010296          319 LTVGR--DRSMQLWKVPEESRL----VFRAPASSLECCCFISNDEFL--SGSDDGSIELWSLLRK-KPVYIVKNAHPLLD  389 (513)
Q Consensus       319 ~~~~~--d~~i~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~--~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~  389 (513)
                      +.+..  -..|.+|++..+...    ...........+.|+|+++++  +.--+++|.+|..... ..+..++.......
T Consensus       159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~  238 (346)
T COG2706         159 LVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE  238 (346)
T ss_pred             EEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence            64443  457999999866543    233567788899999999854  6777999999998874 33334433222110


Q ss_pred             CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CCcEEEEEeCCCCcceeeeeecCccc
Q 010296          390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NGSVRLWAIESETKDIQPLYNLPLVG  468 (513)
Q Consensus       390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~~  468 (513)
                      .                            .....+...|.++|+|++|+++.. ...|.+|.+......+..+...+..+
T Consensus       239 d----------------------------F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg  290 (346)
T COG2706         239 D----------------------------FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG  290 (346)
T ss_pred             c----------------------------cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC
Confidence            0                            223345888999999999998853 34899999987755566555544444


Q ss_pred             E-EEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          469 F-VNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       469 ~-v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      . .+...|+|.|++|+++.-+...|.++...+
T Consensus       291 ~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         291 QFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             cCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            3 789999999999999966667888886654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=2.6e-13  Score=114.91  Aligned_cols=111  Identities=11%  Similarity=0.282  Sum_probs=84.9

Q ss_pred             CCCCeeEEEeecCCe-EE--EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCC
Q 010296          343 PASSLECCCFISNDE-FL--SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSS  419 (513)
Q Consensus       343 ~~~~v~~~~~~~~~~-~~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  419 (513)
                      ...+|..++|+|+|. |+  .|..++.|.+||++ ++++..+..                                    
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~------------------------------------  100 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT------------------------------------  100 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC------------------------------------
Confidence            345699999999985 44  45567899999996 556655532                                    


Q ss_pred             CCcceEEEEEEecCCCEEEEecC---CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecC-----CCc
Q 010296          420 SAYSWVSSVTVCGGSDLAASGAG---NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ-----EPR  491 (513)
Q Consensus       420 ~~~~~i~~~~~s~~~~~l~~g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~-----dg~  491 (513)
                         ..+..+.|+|+|++|++++.   .|.|.+||+.+.    ..+....|. .++.++|+|+|++|+++++.     |..
T Consensus       101 ---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~----~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng  172 (194)
T PF08662_consen  101 ---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK----KKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNG  172 (194)
T ss_pred             ---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC----EEeeccccC-cEEEEEEcCCCCEEEEEEeccceecccc
Confidence               12788999999999999874   367999999866    334433344 47899999999999999664     788


Q ss_pred             ccccccC
Q 010296          492 LGRWGHL  498 (513)
Q Consensus       492 v~~W~~~  498 (513)
                      ++||+..
T Consensus       173 ~~Iw~~~  179 (194)
T PF08662_consen  173 FKIWSFQ  179 (194)
T ss_pred             EEEEEec
Confidence            9999874

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=9.7e-13  Score=111.39  Aligned_cols=151  Identities=17%  Similarity=0.290  Sum_probs=107.7

Q ss_pred             EEEEECCCCCeEEEEeC----------CceEEEEeCCCCcc-ccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          163 TAVALSEDDSKGFSASK----------DGSILHWDVSSGKG-VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       163 ~~~~~s~~~~~l~t~~~----------dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      ..+.|+|.|.+|++-..          -+...||.+..... ...+                  ......+|.+++|+|+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i------------------~l~~~~~I~~~~WsP~   70 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI------------------ELKKEGPIHDVAWSPN   70 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee------------------eccCCCceEEEEECcC
Confidence            46889999998875432          13355555532221 1111                  1223456999999999


Q ss_pred             CCEEEEE--eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC---CCcEEEEeCCCCceeEEeecccCC
Q 010296          232 GRYLASG--GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---DRTVKIWNAEDRAYISTLFGHQSE  306 (513)
Q Consensus       232 ~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~  306 (513)
                      |+.||+.  ...+.|.+||++ ++.+..+.  ...++.+.|+|+|++|++++.   .|.|.+||+++.+.+.... | ..
T Consensus        71 g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~  145 (194)
T PF08662_consen   71 GNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SD  145 (194)
T ss_pred             CCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-Cc
Confidence            9987654  356799999996 66666664  567889999999999998875   4679999999888887764 3 34


Q ss_pred             eEEEEeeCCCeEE-EEe------CCCcEEEEecCCCe
Q 010296          307 VLTIDCLRKERVL-TVG------RDRSMQLWKVPEES  336 (513)
Q Consensus       307 v~~~~~~~~~~~~-~~~------~d~~i~iwd~~~~~  336 (513)
                      +..++|+|+|+++ ++.      .|+.++||+.....
T Consensus       146 ~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~  182 (194)
T PF08662_consen  146 ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL  182 (194)
T ss_pred             EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence            7899999999665 443      37889999986543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1e-12  Score=127.27  Aligned_cols=212  Identities=11%  Similarity=0.066  Sum_probs=140.4

Q ss_pred             CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC---CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-
Q 010296          242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-  317 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-  317 (513)
                      ..|.+||.... ....+..+...+.+.+|+|+++.|+.++.   ...|++|++.+++... +....+...++.|+|++. 
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            46899998644 44455567778999999999999887764   3469999998876533 333445556789999985 


Q ss_pred             EE-EEeCCC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCCC--EEEEecCCCCeeEEeecCCCcccC
Q 010296          318 VL-TVGRDR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDGS--IELWSLLRKKPVYIVKNAHPLLDG  390 (513)
Q Consensus       318 ~~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~  390 (513)
                      ++ +.+.++  .|++|++.++....+..+.......+|+|+|. ++..+ .+|.  |+++++.+++........      
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g------  335 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG------  335 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC------
Confidence            43 444555  59999998877665555544556789999996 55444 3444  666666665533221100      


Q ss_pred             CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC---cEEEEEeCCCCcceeeeeecCcc
Q 010296          391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG---SVRLWAIESETKDIQPLYNLPLV  467 (513)
Q Consensus       391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg---~v~vwd~~~~~~~~~~~~~~~~~  467 (513)
                                                      ......+|||+|++|+..+.++   .|.+|++.++.  ...+.   +.
T Consensus       336 --------------------------------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~--~~~Lt---~~  378 (433)
T PRK04922        336 --------------------------------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS--VRTLT---PG  378 (433)
T ss_pred             --------------------------------CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC--eEECC---CC
Confidence                                            1144689999999988765433   69999997762  22332   22


Q ss_pred             cEEEEEEeecCCCEEEEEecCCC--cccccccC
Q 010296          468 GFVNSLAFAKSGQFLIAGVGQEP--RLGRWGHL  498 (513)
Q Consensus       468 ~~v~~v~~sp~~~~l~~~~~~dg--~v~~W~~~  498 (513)
                      .......|+|||++|+.++...+  .|.+|+..
T Consensus       379 ~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        379 SLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            23456799999999887745444  45555554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.55  E-value=5.1e-12  Score=114.42  Aligned_cols=292  Identities=13%  Similarity=0.129  Sum_probs=189.0

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|.......-..+..-.-++..++|||.|.+|++....| |.+|.-.....+..+                     ....
T Consensus        16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~---------------------~~~~   73 (561)
T COG5354          16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF---------------------RHPD   73 (561)
T ss_pred             eecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeee---------------------ecCC
Confidence            344444333344444667899999999999999887654 888988776644433                     2335


Q ss_pred             EEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCCcceeeeccCcCC------------------------
Q 010296          223 ILALAVSSDGRYLASGGLDR---------------HIHLWDTRIQEHIQAFPGHRG------------------------  263 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg---------------~i~vwd~~~~~~~~~~~~~~~------------------------  263 (513)
                      |..+.|+|.+++|.+-+..+               .+.+||+.++..+..+.....                        
T Consensus        74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s  153 (561)
T COG5354          74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS  153 (561)
T ss_pred             ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCe
Confidence            89999999999999866433               499999998877665543222                        


Q ss_pred             ---------------------CeEEEEEecCCC--eEEE-----EeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296          264 ---------------------PVSCLTFRQGTS--ELFS-----GSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       264 ---------------------~v~~~~~~~~~~--~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  315 (513)
                                           .|....|+|.++  .|+.     .+..+++++|.+..+..+.+..-....-..+.|.+.
T Consensus       154 l~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~  233 (561)
T COG5354         154 LYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVL  233 (561)
T ss_pred             EEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecC
Confidence                                 344445555322  2221     234556666666655444333222333355677776


Q ss_pred             CeEEEEe------------CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-E--EEEeCCCCEEEEecCCCCeeEE
Q 010296          316 ERVLTVG------------RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-F--LSGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       316 ~~~~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~--~~~~~dg~i~iwd~~~~~~~~~  380 (513)
                      |..+.+-            ...+++++++............++|...+|.|.+. |  ++|-....+.++|++.. ....
T Consensus       234 g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~  312 (561)
T COG5354         234 GKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY  312 (561)
T ss_pred             CceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe
Confidence            6432211            12567888887555555546678999999999874 4  46678899999998876 3333


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---CcEEEEEeCCCCcc
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---GSVRLWAIESETKD  457 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~v~vwd~~~~~~~  457 (513)
                      +...                                       .-..+.|||.++++++++-+   |.|.+|+.......
T Consensus       313 ~Pe~---------------------------------------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~  353 (561)
T COG5354         313 FPEQ---------------------------------------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV  353 (561)
T ss_pred             cCCc---------------------------------------ccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence            3221                                       14567899999999987755   78999998876332


Q ss_pred             eeeeeecCcccEEEEEEeecCCCEEEEEec-----CCCcccccccCCC
Q 010296          458 IQPLYNLPLVGFVNSLAFAKSGQFLIAGVG-----QEPRLGRWGHLPA  500 (513)
Q Consensus       458 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-----~dg~v~~W~~~~~  500 (513)
                      +..+.    ....+-+.|+|+++++.+...     .|..+.||++...
T Consensus       354 ~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         354 AGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             EEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            22222    223455789999999887743     3568999987543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.55  E-value=6.7e-13  Score=114.13  Aligned_cols=250  Identities=14%  Similarity=0.214  Sum_probs=176.9

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ..++.+.||...|+....-|...-+++.+.|.+++||--.+...   +|+..              ......+++++.++
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q---~wpsI--------------~~~mP~~~~~~~y~   77 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ---YWPSI--------------YHYMPSPCSAMEYV   77 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc---cCchh--------------hhhCCCCceEeeee
Confidence            45678899999999999999989999999999999996443221   22221              12345679999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCC----CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296          230 SDGRYLASGGLDRHIHLWDTR----IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS  305 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  305 (513)
                      +....|++|-..|++.-+.+.    ....++.+..|...|..+-|+-....+++.+.|..+.---.+.+..+..+. ...
T Consensus        78 ~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~  156 (404)
T KOG1409|consen   78 SESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FET  156 (404)
T ss_pred             ccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eec
Confidence            999999999999999988654    344566677899999999999888999999999877544444444332221 011


Q ss_pred             CeEEEEeeCCCeEEEEeCCCcEEEEecCC---CeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEe
Q 010296          306 EVLTIDCLRKERVLTVGRDRSMQLWKVPE---ESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       306 ~v~~~~~~~~~~~~~~~~d~~i~iwd~~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                      ...++.+.-. ..+.+...|.|.+..+..   +....+.+|...+.+++|.+... +++|..|..+.+||+...+-+...
T Consensus       157 ~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e  235 (404)
T KOG1409|consen  157 PASALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE  235 (404)
T ss_pred             cCCCCceeeE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee
Confidence            1111111111 223455556665554432   23347788999999999999775 779999999999999776544333


Q ss_pred             ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .                                    .+|...|..++.-+--+.|++++.||.|.+|+.+..
T Consensus       236 l------------------------------------~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  236 L------------------------------------QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             e------------------------------------ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            2                                    233334777777777778999999999999998653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.54  E-value=1.7e-13  Score=124.39  Aligned_cols=171  Identities=13%  Similarity=0.163  Sum_probs=127.9

Q ss_pred             CCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEE
Q 010296          168 SEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GRYLASGGLDRHIHL  246 (513)
Q Consensus       168 s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~v  246 (513)
                      .|.+--|+.|-.-|.|.+.|....+ +..++....              .-....|+|+.|-|. ...++++-.+|.+++
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~-~sklfne~r--------------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyl  246 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFE-VSKLFNEER--------------LINKSSVTCIKWVPGSDSLFLVAHASGNLYL  246 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhH-HHHhhhhcc--------------cccccceEEEEEEeCCCceEEEEEecCceEE
Confidence            3456678888888889888876522 222211111              112367999999994 446667778999999


Q ss_pred             EeCCCc----------------------------ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296          247 WDTRIQ----------------------------EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       247 wd~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      ||..-.                            .++..+....+.|+.++|+|||++||+.+.||.++|+|..+.+++.
T Consensus       247 y~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg  326 (636)
T KOG2394|consen  247 YDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG  326 (636)
T ss_pred             eeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence            975310                            1112222234578999999999999999999999999999988887


Q ss_pred             EeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEee
Q 010296          299 TLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFI  353 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~  353 (513)
                      .++.--+...|++|+|||+++ +++.|..|.||.+...+.+ .-.+|.+.|..++|.
T Consensus       327 ~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  327 VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            777777889999999999665 8999999999999888776 456788888888886

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=2.7e-12  Score=123.84  Aligned_cols=210  Identities=12%  Similarity=0.123  Sum_probs=135.8

Q ss_pred             CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC---CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-
Q 010296          242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD---RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-  317 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-  317 (513)
                      ..|.++|.. +.....+..+...+.+.+|+|+|+.|+..+..   ..|++||+.+++... +....+.+.+..|+|++. 
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            467777864 44444555677889999999999998876643   459999999886543 333445667899999984 


Q ss_pred             EE-EEeCCCcEEEEe--cCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCCCEEEEec--CCCCeeEEeecCCCcccC
Q 010296          318 VL-TVGRDRSMQLWK--VPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDGSIELWSL--LRKKPVYIVKNAHPLLDG  390 (513)
Q Consensus       318 ~~-~~~~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~  390 (513)
                      ++ +.+.++...+|.  +.++....+..+........|+|+|. ++..+ ..|...||.+  .++........ .     
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-g-----  327 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-G-----  327 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-C-----
Confidence            44 456677655554  44444444444444556788999996 44333 4566666654  34332221110 0     


Q ss_pred             CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC---cEEEEEeCCCCcceeeeeecCcc
Q 010296          391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG---SVRLWAIESETKDIQPLYNLPLV  467 (513)
Q Consensus       391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg---~v~vwd~~~~~~~~~~~~~~~~~  467 (513)
                                                      ......+|||+|++|+..+.++   .|++|++.++.  ...+..   .
T Consensus       328 --------------------------------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~--~~~lt~---~  370 (427)
T PRK02889        328 --------------------------------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ--VTALTD---T  370 (427)
T ss_pred             --------------------------------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC--eEEccC---C
Confidence                                            0134578999999998776554   69999998762  222321   2


Q ss_pred             cEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          468 GFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       468 ~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      .......|+|||++|+.++...|.-.+|-
T Consensus       371 ~~~~~p~~spdg~~l~~~~~~~g~~~l~~  399 (427)
T PRK02889        371 TRDESPSFAPNGRYILYATQQGGRSVLAA  399 (427)
T ss_pred             CCccCceECCCCCEEEEEEecCCCEEEEE
Confidence            23467899999999998865565544553

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.54  E-value=7e-13  Score=113.99  Aligned_cols=258  Identities=15%  Similarity=0.239  Sum_probs=172.9

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-----eeeeccCcC------------CCeEEEEEecCCC--eEEEE
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE-----HIQAFPGHR------------GPVSCLTFRQGTS--ELFSG  280 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~  280 (513)
                      ..-|.++.|...|.+||+|..+|.|.++.-....     ....++.|.            ..|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4558999999999999999999999999643222     223333342            4688899988664  57788


Q ss_pred             eCCCcEEEEeCCCCcee-----------------------------------EE-eecccCCeEEEEeeCCCeEEEEeCC
Q 010296          281 SFDRTVKIWNAEDRAYI-----------------------------------ST-LFGHQSEVLTIDCLRKERVLTVGRD  324 (513)
Q Consensus       281 ~~dg~i~iwd~~~~~~~-----------------------------------~~-~~~~~~~v~~~~~~~~~~~~~~~~d  324 (513)
                      +.|.+|++|.+......                                   +. -..|.-.|+++.++.+...+..+.|
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd  184 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD  184 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence            89999999987532100                                   00 0247778999999999888878888


Q ss_pred             CcEEEEecCCCee-e---EEecC-----CCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecC--CCcccCC
Q 010296          325 RSMQLWKVPEESR-L---VFRAP-----ASSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNA--HPLLDGL  391 (513)
Q Consensus       325 ~~i~iwd~~~~~~-~---~~~~~-----~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~  391 (513)
                      =.|.+|++.-... .   -...+     ..-|++..|+|..  .|+-.++.|+|++.|++.....-.-...  .+.... 
T Consensus       185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~-  263 (433)
T KOG1354|consen  185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS-  263 (433)
T ss_pred             eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc-
Confidence            9999999853221 1   11222     1347778888865  4888899999999999864322111000  000000 


Q ss_pred             CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCc-----
Q 010296          392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPL-----  466 (513)
Q Consensus       392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~-----  466 (513)
                           +.+.+                 ......|..+.|+++|+||++-..- +|+|||++...+++........     
T Consensus       264 -----~rsff-----------------seiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  264 -----SRSFF-----------------SEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             -----chhhH-----------------HHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHH
Confidence                 00000                 1112338899999999999998765 8999999776566655443211     


Q ss_pred             -----ccE---EEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          467 -----VGF---VNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       467 -----~~~---v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                           ...   -.-++|+-++.++++| +....+++++...+.+
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TG-sy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTG-SYNNVFRVFNLARGSK  363 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEecc-cccceEEEecCCCCcc
Confidence                 122   2357899999999999 8888999998665543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.51  E-value=1.1e-10  Score=109.25  Aligned_cols=266  Identities=10%  Similarity=0.156  Sum_probs=167.4

Q ss_pred             CCCeEEEEECCCCCeEEEEeC----CceEEEEeCCCC-ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296          159 RQSVTAVALSEDDSKGFSASK----DGSILHWDVSSG-KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR  233 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~----dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  233 (513)
                      ......|+++|++++|++...    .+.|..|.+... ..+..+       .         ...........++++|+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~-------~---------~~~~~g~~p~~i~~~~~g~   99 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL-------N---------SVPSGGSSPCHIAVDPDGR   99 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE-------E---------EEEESSSCEEEEEECTTSS
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe-------e---------eeccCCCCcEEEEEecCCC
Confidence            455677899999999998876    578999998764 222111       0         0111234466799999999


Q ss_pred             EEEEEeC-CCcEEEEeCCC-cceeee---c----------cCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCc--
Q 010296          234 YLASGGL-DRHIHLWDTRI-QEHIQA---F----------PGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRA--  295 (513)
Q Consensus       234 ~l~s~~~-dg~i~vwd~~~-~~~~~~---~----------~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~--  295 (513)
                      +|+++.. +|.|.++++.. +.+...   +          +.......++.|+|++++|++... ...|.+|++....  
T Consensus       100 ~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~  179 (345)
T PF10282_consen  100 FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK  179 (345)
T ss_dssp             EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T
T ss_pred             EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce
Confidence            9998875 79999999976 333221   1          112345789999999999887643 4579999997654  


Q ss_pred             ee--EEe-ecccCCeEEEEeeCCCeEE--EEeCCCcEEEEecC--CCeeeE---Eec------CCCCeeEEEeecCCe--
Q 010296          296 YI--STL-FGHQSEVLTIDCLRKERVL--TVGRDRSMQLWKVP--EESRLV---FRA------PASSLECCCFISNDE--  357 (513)
Q Consensus       296 ~~--~~~-~~~~~~v~~~~~~~~~~~~--~~~~d~~i~iwd~~--~~~~~~---~~~------~~~~v~~~~~~~~~~--  357 (513)
                      ..  ..+ .......+.+.|+|++.++  +.-.++.|.+|++.  .+....   ...      .......+.++|+|+  
T Consensus       180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l  259 (345)
T PF10282_consen  180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL  259 (345)
T ss_dssp             EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE
T ss_pred             EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE
Confidence            31  122 2344567899999998544  44468899999988  332221   111      112567899999997  


Q ss_pred             EEEEeCCCCEEEEecC--CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC
Q 010296          358 FLSGSDDGSIELWSLL--RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD  435 (513)
Q Consensus       358 ~~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  435 (513)
                      +++....+.|.+|++.  +++. ..+...                                  .........++++|+|+
T Consensus       260 yvsnr~~~sI~vf~~d~~~g~l-~~~~~~----------------------------------~~~G~~Pr~~~~s~~g~  304 (345)
T PF10282_consen  260 YVSNRGSNSISVFDLDPATGTL-TLVQTV----------------------------------PTGGKFPRHFAFSPDGR  304 (345)
T ss_dssp             EEEECTTTEEEEEEECTTTTTE-EEEEEE----------------------------------EESSSSEEEEEE-TTSS
T ss_pred             EEEeccCCEEEEEEEecCCCce-EEEEEE----------------------------------eCCCCCccEEEEeCCCC
Confidence            3455677889999993  2332 222110                                  00011278999999999


Q ss_pred             EEEEec-CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEe
Q 010296          436 LAASGA-GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAF  475 (513)
Q Consensus       436 ~l~~g~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~  475 (513)
                      +|+++. .++.|.+|++......+.............||.|
T Consensus       305 ~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  305 YLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            998876 5678999998654344444443222344566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=5.5e-12  Score=118.64  Aligned_cols=298  Identities=7%  Similarity=0.036  Sum_probs=198.5

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      ......|++|+....|+|+||.||.++|..+.+...-....+    +.....-.....+.+|...|..+.|+.+...|-+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt   88 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT   88 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccc
Confidence            346689999999999999999999999998876543322111    1111111223367899999999999999999999


Q ss_pred             EeCCCcEEEEeCCCcceeeecc--CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296          238 GGLDRHIHLWDTRIQEHIQAFP--GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  315 (513)
                      ...+|.|.||-+-.+.....+.  ...+.|.+|+|+.+|..++....||.|.+=.+...+.-.. .-.......+.|+++
T Consensus        89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK-eLkg~~l~hv~ws~D  167 (1189)
T KOG2041|consen   89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK-ELKGQLLAHVLWSED  167 (1189)
T ss_pred             cCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch-hcchheccceeeccc
Confidence            9999999999998876554432  2556789999999999999999999998888765443211 111223457889998


Q ss_pred             CeEE-EEeCCCcEEEEecCCCeee------------EEecCCCCeeEEEeec--------CC-eEEEEeCCCCEEEEecC
Q 010296          316 ERVL-TVGRDRSMQLWKVPEESRL------------VFRAPASSLECCCFIS--------ND-EFLSGSDDGSIELWSLL  373 (513)
Q Consensus       316 ~~~~-~~~~d~~i~iwd~~~~~~~------------~~~~~~~~v~~~~~~~--------~~-~~~~~~~dg~i~iwd~~  373 (513)
                      ..++ .+-..|.+.+||....-..            .+......+..+.|..        +. .|+++-.+|.+.|..-.
T Consensus       168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e  247 (1189)
T KOG2041|consen  168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE  247 (1189)
T ss_pred             HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence            7544 6667899999997653211            1122223355555542        22 37788888888776543


Q ss_pred             CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---------C
Q 010296          374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---------G  444 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---------g  444 (513)
                      +......+...                                      -.+..+.|+++|.+||+++.+         +
T Consensus       248 ND~~Pvv~dtg--------------------------------------m~~vgakWnh~G~vLAvcG~~~da~~~~d~n  289 (1189)
T KOG2041|consen  248 NDPEPVVVDTG--------------------------------------MKIVGAKWNHNGAVLAVCGNDSDADEPTDSN  289 (1189)
T ss_pred             CCCCCeEEecc--------------------------------------cEeecceecCCCcEEEEccCcccccCccccc
Confidence            33222222111                                      128899999999999998854         2


Q ss_pred             cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccc
Q 010296          445 SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNG  504 (513)
Q Consensus       445 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~  504 (513)
                      .|.+|..-.  ..+..+..  ....|++++|-..|-.++.+  -|+.|.+=+..+..+-+
T Consensus       290 ~v~Fysp~G--~i~gtlkv--pg~~It~lsWEg~gLriA~A--vdsfiyfanIRP~ykWg  343 (1189)
T KOG2041|consen  290 KVHFYSPYG--HIVGTLKV--PGSCITGLSWEGTGLRIAIA--VDSFIYFANIRPEYKWG  343 (1189)
T ss_pred             eEEEeccch--hheEEEec--CCceeeeeEEcCCceEEEEE--ecceEEEEeecccceEE
Confidence            455554322  12223332  35679999998888777766  35566665555554433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.50  E-value=9.3e-12  Score=120.96  Aligned_cols=157  Identities=13%  Similarity=0.083  Sum_probs=109.5

Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEE-EeCCC--cEEEEeC
Q 010296          218 KQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFS-GSFDR--TVKIWNA  291 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~iwd~  291 (513)
                      .+...+.+.+|+|+|++|+.++..   ..|++|++.+++.... ..+...+.+++|+|+++.|+. .+.++  .|++|++
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~  265 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL  265 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence            455568899999999999987654   4799999988765433 335566778999999997764 44444  5999999


Q ss_pred             CCCceeEEeecccCCeEEEEeeCCCe-EEEEeC-CC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCC-
Q 010296          292 EDRAYISTLFGHQSEVLTIDCLRKER-VLTVGR-DR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDG-  365 (513)
Q Consensus       292 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg-  365 (513)
                      .++... .+..+........|+|++. ++.++. .+  .|+++++.++....+...........|+|++. ++.++.++ 
T Consensus       266 ~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~  344 (417)
T TIGR02800       266 DGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGG  344 (417)
T ss_pred             CCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCC
Confidence            877543 3444545556778999885 444443 33  58888887766555554555667788999986 55555554 


Q ss_pred             --CEEEEecCCCC
Q 010296          366 --SIELWSLLRKK  376 (513)
Q Consensus       366 --~i~iwd~~~~~  376 (513)
                        .|.+||+.++.
T Consensus       345 ~~~i~~~d~~~~~  357 (417)
T TIGR02800       345 GFNIAVMDLDGGG  357 (417)
T ss_pred             ceEEEEEeCCCCC
Confidence              68888887754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=2.2e-11  Score=111.49  Aligned_cols=277  Identities=16%  Similarity=0.187  Sum_probs=179.8

Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL  240 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  240 (513)
                      .=+-+.|||-|.||+|-..-| |.+|--.+...++.+                    .|. .|.-+.|||+.+||+|-+.
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--------------------~Hp-~Vq~idfSP~EkYLVT~s~  269 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--------------------YHP-GVQFIDFSPNEKYLVTYSP  269 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--------------------cCC-CceeeecCCccceEEEecC
Confidence            356789999999999998766 788976666655544                    333 3888999999999999653


Q ss_pred             -----------CCcEEEEeCCCcceeeeccC--cCCCeE-EEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC
Q 010296          241 -----------DRHIHLWDTRIQEHIQAFPG--HRGPVS-CLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE  306 (513)
Q Consensus       241 -----------dg~i~vwd~~~~~~~~~~~~--~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  306 (513)
                                 ...++|||+.+|...+.|..  ....++ -+.||.|++++|.-.. .+|.||+..+..++..-.-....
T Consensus       270 ~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~g  348 (698)
T KOG2314|consen  270 EPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISG  348 (698)
T ss_pred             CccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCcc
Confidence                       25799999999998888775  223333 3589999999987665 57999998775544333334567


Q ss_pred             eEEEEeeCCCeEEEEeC------CCcEEEEecCCCeeeEEe-cCCCCeeEEEeecCCeEEEEeCC-----------CCEE
Q 010296          307 VLTIDCLRKERVLTVGR------DRSMQLWKVPEESRLVFR-APASSLECCCFISNDEFLSGSDD-----------GSIE  368 (513)
Q Consensus       307 v~~~~~~~~~~~~~~~~------d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~d-----------g~i~  368 (513)
                      |....|+|.+.+++--.      -..+.+..+.+++.+... .++-.-..+.|..+|.+++.-.|           ..+.
T Consensus       349 Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~e  428 (698)
T KOG2314|consen  349 IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLE  428 (698)
T ss_pred             ccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEE
Confidence            88899999876654321      234555566555544221 12212223445555544432211           1233


Q ss_pred             EEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC---CC
Q 010296          369 LWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG---NG  444 (513)
Q Consensus       369 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---dg  444 (513)
                      |+.++... ++..+.                                      ....|...+|-|.|..+++-+.   ..
T Consensus       429 IfrireKdIpve~ve--------------------------------------lke~vi~FaWEP~gdkF~vi~g~~~k~  470 (698)
T KOG2314|consen  429 IFRIREKDIPVEVVE--------------------------------------LKESVIAFAWEPHGDKFAVISGNTVKN  470 (698)
T ss_pred             EEEeeccCCCceeee--------------------------------------cchheeeeeeccCCCeEEEEEcccccc
Confidence            44433322 111111                                      1223889999999988776553   36


Q ss_pred             cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEe--cCCCcccccccCC
Q 010296          445 SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGV--GQEPRLGRWGHLP  499 (513)
Q Consensus       445 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--~~dg~v~~W~~~~  499 (513)
                      +|.+|.+.+.......+..+. ....+.|.|+|.|+++++++  |..|.+.++|..-
T Consensus       471 tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  471 TVSFYAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             ceeEEEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            799999985434444444443 35678899999999998774  3468888888763

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.48  E-value=2.3e-11  Score=102.67  Aligned_cols=268  Identities=15%  Similarity=0.160  Sum_probs=180.4

Q ss_pred             CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC---CCC-EEEEEeCCCcEEEEeCCCccee
Q 010296          180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS---DGR-YLASGGLDRHIHLWDTRIQEHI  255 (513)
Q Consensus       180 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~-~l~s~~~dg~i~vwd~~~~~~~  255 (513)
                      .|.+.+|++...+... +    ..           ....-...+..+.|.-   +|. .|+-+...|.|.++........
T Consensus        45 ~Gkl~Lys~~d~~~~~-l----~~-----------~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss  108 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSP-L----DT-----------LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS  108 (339)
T ss_pred             ccceEEEeecccccCc-c----ce-----------eeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence            4678888887665432 1    00           0112234566677754   444 4566677899999986554444


Q ss_pred             eeccCcC------CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce--eEEeecccCCeEEEEeeCC--CeEEEEeCCC
Q 010296          256 QAFPGHR------GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY--ISTLFGHQSEVLTIDCLRK--ERVLTVGRDR  325 (513)
Q Consensus       256 ~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~  325 (513)
                      ..+.+-.      ....++.|++.+..++++-.+|.+.+-+......  ++.++.|.-.++...|+..  +.+++|+.|+
T Consensus       109 ~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~  188 (339)
T KOG0280|consen  109 VHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDG  188 (339)
T ss_pred             eeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCc
Confidence            3443311      1245778899999999999999999776655544  3477889999999998763  3556999999


Q ss_pred             cEEEEecCCCeee---EEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCC-CCeeEEeecCCCcccCCCCcccCcC
Q 010296          326 SMQLWKVPEESRL---VFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLR-KKPVYIVKNAHPLLDGLKNFEQDEG  399 (513)
Q Consensus       326 ~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                      .+..||++.....   ....|...|.++.-+|..  .+++|+.|-.|++||.++ ++|+..-...               
T Consensus       189 ~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~---------------  253 (339)
T KOG0280|consen  189 SLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG---------------  253 (339)
T ss_pred             eEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc---------------
Confidence            9999999944433   245678889999888764  488999999999999984 6666543322               


Q ss_pred             ccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC--CEEEEecCCCcEEEEEeCCCCcceeeeee--cCcccEEEEEEe
Q 010296          400 KISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS--DLAASGAGNGSVRLWAIESETKDIQPLYN--LPLVGFVNSLAF  475 (513)
Q Consensus       400 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~g~~dg~v~vwd~~~~~~~~~~~~~--~~~~~~v~~v~~  475 (513)
                                             +.|..+..+|.-  .+|+++-.+| .+|-++......++....  ..|.+-+..-.|
T Consensus       254 -----------------------GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW  309 (339)
T KOG0280|consen  254 -----------------------GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW  309 (339)
T ss_pred             -----------------------cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecccc
Confidence                                   339999999843  3455555554 788887765333221111  125566666777


Q ss_pred             ecCCCEEEEEecCCCccc-ccccCCCcc
Q 010296          476 AKSGQFLIAGVGQEPRLG-RWGHLPAAR  502 (513)
Q Consensus       476 sp~~~~l~~~~~~dg~v~-~W~~~~~~~  502 (513)
                      ..-..+|++++..|..++ +|-..+++.
T Consensus       310 d~~~~~lATCsFYDk~~~~~Wl~~t~~~  337 (339)
T KOG0280|consen  310 DSKDSFLATCSFYDKKIRQLWLHITGEP  337 (339)
T ss_pred             ccccceeeeeeccccceeeeeeeccCCc
Confidence            555568999888998855 997776654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=5.1e-12  Score=110.69  Aligned_cols=210  Identities=10%  Similarity=0.125  Sum_probs=156.6

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC-
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR-  233 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  233 (513)
                      ....+++|..++...  ..|++|-.+|.+.+|....+..-...               . ........+..|.-++... 
T Consensus       101 ~~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~~k~~d~hss~---------------l-~~la~g~g~~~~r~~~~~p~  162 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLAD--GTLITCVSSGNLQVRHDKSGDLHSSK---------------L-IKLATGPGLYDVRQTDTDPY  162 (412)
T ss_pred             cccccccccchhhcC--CEEEEEecCCcEEEEeccCCcccccc---------------c-eeeecCCceeeeccCCCCCc
Confidence            334566677666643  46888899999999999855421100               0 0012234567777777544 


Q ss_pred             EEEEEeCC--CcEEEEeCCCcceeeeccCc---------CCCeEEEEEecC--CCeEEEEeCCCcEEEEeCCCC-ceeEE
Q 010296          234 YLASGGLD--RHIHLWDTRIQEHIQAFPGH---------RGPVSCLTFRQG--TSELFSGSFDRTVKIWNAEDR-AYIST  299 (513)
Q Consensus       234 ~l~s~~~d--g~i~vwd~~~~~~~~~~~~~---------~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~-~~~~~  299 (513)
                      .+++|+..  ..+.|||+...+.+..-+.-         .-.++++.|.+.  ...|++++.-+.|++||.+.+ +++..
T Consensus       163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~  242 (412)
T KOG3881|consen  163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ  242 (412)
T ss_pred             eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence            55668888  88999999988655443321         124567888887  788999999999999999865 46777


Q ss_pred             eecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCC
Q 010296          300 LFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~  375 (513)
                      +.-...++.++...|++.++ ++..-+.+..||++.+...  .+.+..+.+.++..+|... +++++-|..|||+|+.+.
T Consensus       243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            77778899999999988665 8888999999999998877  3677788999999999976 679999999999999997


Q ss_pred             CeeEEee
Q 010296          376 KPVYIVK  382 (513)
Q Consensus       376 ~~~~~~~  382 (513)
                      +++....
T Consensus       323 kll~kvY  329 (412)
T KOG3881|consen  323 KLLHKVY  329 (412)
T ss_pred             hhhhhhh
Confidence            7666543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=3.9e-11  Score=116.70  Aligned_cols=216  Identities=14%  Similarity=0.095  Sum_probs=135.9

Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCC--cEEEEeC
Q 010296          218 KQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDR--TVKIWNA  291 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~  291 (513)
                      .+...+....|+|+|+.|+..+.+   ..|.+|++.+++... +....+.+....|+|+|+.|+ +.+.+|  .|++||+
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~  274 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL  274 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence            456678999999999999876643   469999998886543 332334556789999999887 444454  5888899


Q ss_pred             CCCceeEEeecccCCeEEEEeeCCCe-EEEEe-CC--CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCC
Q 010296          292 EDRAYISTLFGHQSEVLTIDCLRKER-VLTVG-RD--RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDG  365 (513)
Q Consensus       292 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg  365 (513)
                      .++... .+..+........|+|++. ++..+ .+  ..|+++++.++....+...........|+|++. ++..+ .++
T Consensus       275 ~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~  353 (430)
T PRK00178        275 ASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG  353 (430)
T ss_pred             CCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC
Confidence            887643 3444555567788999885 44443 33  357778887766543332223334568999986 43333 333


Q ss_pred             --CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC
Q 010296          366 --SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN  443 (513)
Q Consensus       366 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  443 (513)
                        .|.+||+.+++... +.....                                      .....|+|+|++|+..+.+
T Consensus       354 ~~~l~~~dl~tg~~~~-lt~~~~--------------------------------------~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        354 NFHVAAQDLQRGSVRI-LTDTSL--------------------------------------DESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             ceEEEEEECCCCCEEE-ccCCCC--------------------------------------CCCceECCCCCEEEEEEec
Confidence              47788888775432 211100                                      1234799999988876643


Q ss_pred             -C--cEEEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296          444 -G--SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS  478 (513)
Q Consensus       444 -g--~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~  478 (513)
                       |  .|+++++...  ....+..  +.+.+...+|+|-
T Consensus       395 ~g~~~l~~~~~~g~--~~~~l~~--~~g~~~~p~ws~~  428 (430)
T PRK00178        395 QGRGVLMLVSINGR--VRLPLPT--AQGEVREPSWSPY  428 (430)
T ss_pred             CCceEEEEEECCCC--ceEECcC--CCCCcCCCccCCC
Confidence             3  4666666433  2222221  3455677778763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=9.2e-10  Score=96.37  Aligned_cols=273  Identities=12%  Similarity=0.146  Sum_probs=180.7

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeC---CceEEEEeCCC--CccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASK---DGSILHWDVSS--GKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      ..+..+.+.++-|+|+|+.++|.++..   .|.|..|.++.  |.... + .               .......+-+.++
T Consensus        33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-l-n---------------~~~~~g~~p~yvs   95 (346)
T COG2706          33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-L-N---------------RQTLPGSPPCYVS   95 (346)
T ss_pred             hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-e-e---------------ccccCCCCCeEEE
Confidence            344567889999999999999998865   47788888775  33211 1 0               0111222348899


Q ss_pred             EcCCCCEEEEEeC-CCcEEEEeCCC-cceeee--ccCcCCC----------eEEEEEecCCCeEEEEeC-CCcEEEEeCC
Q 010296          228 VSSDGRYLASGGL-DRHIHLWDTRI-QEHIQA--FPGHRGP----------VSCLTFRQGTSELFSGSF-DRTVKIWNAE  292 (513)
Q Consensus       228 ~s~~~~~l~s~~~-dg~i~vwd~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~iwd~~  292 (513)
                      ++++|++|+++.. .|.|.++-++. |.+...  +..|.+.          +.+..|.|++++|+++.. --.|.+|++.
T Consensus        96 vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~  175 (346)
T COG2706          96 VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD  175 (346)
T ss_pred             ECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc
Confidence            9999999999876 48899999865 332211  1225554          889999999999998754 2369999998


Q ss_pred             CCceeEE---eecccCCeEEEEeeCCCeEE--EEeCCCcEEEEecCCC--eeeEE---------ecCCCCeeEEEeecCC
Q 010296          293 DRAYIST---LFGHQSEVLTIDCLRKERVL--TVGRDRSMQLWKVPEE--SRLVF---------RAPASSLECCCFISND  356 (513)
Q Consensus       293 ~~~~~~~---~~~~~~~v~~~~~~~~~~~~--~~~~d~~i~iwd~~~~--~~~~~---------~~~~~~v~~~~~~~~~  356 (513)
                      .+.....   ........+.|.|+|+++++  ++--+++|-+|.....  +...+         .........+.++++|
T Consensus       176 dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG  255 (346)
T COG2706         176 DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG  255 (346)
T ss_pred             cCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC
Confidence            7764321   11345567899999999877  3446899999998774  22111         1223456678899999


Q ss_pred             eEEEEeCC--CCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC
Q 010296          357 EFLSGSDD--GSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG  433 (513)
Q Consensus       357 ~~~~~~~d--g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  433 (513)
                      +|+.++.-  ..|.+|.+... ..+......                                  ..+......+.|++.
T Consensus       256 rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~----------------------------------~teg~~PR~F~i~~~  301 (346)
T COG2706         256 RFLYASNRGHDSIAVFSVDPDGGKLELVGIT----------------------------------PTEGQFPRDFNINPS  301 (346)
T ss_pred             CEEEEecCCCCeEEEEEEcCCCCEEEEEEEe----------------------------------ccCCcCCccceeCCC
Confidence            97766644  35666666543 222222211                                  112222667889999


Q ss_pred             CCEEEEecCC-CcEEEEEeCCCCcceeeeeecCcccEEEEEEee
Q 010296          434 SDLAASGAGN-GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFA  476 (513)
Q Consensus       434 ~~~l~~g~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~s  476 (513)
                      +++|+++..+ ..|.+|.+...+..+..+..........||.|.
T Consensus       302 g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         302 GRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            9999988855 579999998776666666554444455667664

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.45  E-value=3.4e-11  Score=117.04  Aligned_cols=205  Identities=11%  Similarity=0.093  Sum_probs=136.4

Q ss_pred             CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC---CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-
Q 010296          242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD---RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-  317 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-  317 (513)
                      ..|.++|..... ...+..+...+.+..|+|++++|+.++..   ..|++|++.+++... +..+...+.++.|+|++. 
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            468888875443 34455566778999999999999877643   479999998876543 333556677889999985 


Q ss_pred             EE-EEeCC--CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCC--CEEEEecCCCCeeEEeecCCCcccC
Q 010296          318 VL-TVGRD--RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDG--SIELWSLLRKKPVYIVKNAHPLLDG  390 (513)
Q Consensus       318 ~~-~~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~  390 (513)
                      ++ +.+.+  ..|++|++.++....+..+........|+|++. ++..+ ..+  .|+++++.+++.......       
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~-------  320 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR-------  320 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-------
Confidence            44 33333  358899998776655544444455678999885 54443 333  577778776654322111       


Q ss_pred             CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC---cEEEEEeCCCCcceeeeeecCcc
Q 010296          391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG---SVRLWAIESETKDIQPLYNLPLV  467 (513)
Q Consensus       391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg---~v~vwd~~~~~~~~~~~~~~~~~  467 (513)
                                                     ...+..+.|+|+|++|+.++.++   .|.+|++.++  ....+..   .
T Consensus       321 -------------------------------~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~--~~~~l~~---~  364 (417)
T TIGR02800       321 -------------------------------GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG--GERVLTD---T  364 (417)
T ss_pred             -------------------------------CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC--CeEEccC---C
Confidence                                           11256788999999999887765   7888888775  2232322   1


Q ss_pred             cEEEEEEeecCCCEEEEEecCCCc
Q 010296          468 GFVNSLAFAKSGQFLIAGVGQEPR  491 (513)
Q Consensus       468 ~~v~~v~~sp~~~~l~~~~~~dg~  491 (513)
                      .......|+|+|++|+.+...++.
T Consensus       365 ~~~~~p~~spdg~~l~~~~~~~~~  388 (417)
T TIGR02800       365 GLDESPSFAPNGRMILYATTRGGR  388 (417)
T ss_pred             CCCCCceECCCCCEEEEEEeCCCc
Confidence            223456899999999988555544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=4.9e-11  Score=115.43  Aligned_cols=215  Identities=14%  Similarity=0.096  Sum_probs=131.5

Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEE-EeCCCc--EEEEeC
Q 010296          218 KQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFS-GSFDRT--VKIWNA  291 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~iwd~  291 (513)
                      .+...+.+..|+|+|+.|+..+..   ..|++||+.+++... +....+......|+|+|+.|+. .+.+|.  |++||+
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            445678899999999998876543   358899998876532 2222233457899999998774 555664  888898


Q ss_pred             CCCceeEEeecccCCeEEEEeeCCCeEE-EEe-CCC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCC
Q 010296          292 EDRAYISTLFGHQSEVLTIDCLRKERVL-TVG-RDR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDG  365 (513)
Q Consensus       292 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg  365 (513)
                      .+++. ..+..+........|+|++..+ ..+ .++  .|+++++.++...............+|+|+|. ++ +...++
T Consensus       294 ~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g  372 (448)
T PRK04792        294 ATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG  372 (448)
T ss_pred             CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence            87764 3444455566788999998544 333 333  56677777665543332223334568999986 43 333444


Q ss_pred             C--EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC
Q 010296          366 S--IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN  443 (513)
Q Consensus       366 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  443 (513)
                      .  |.++|+.+++... +....                                      ......|+|+|++|+..+.+
T Consensus       373 ~~~I~~~dl~~g~~~~-lt~~~--------------------------------------~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        373 KFNIARQDLETGAMQV-LTSTR--------------------------------------LDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             ceEEEEEECCCCCeEE-ccCCC--------------------------------------CCCCceECCCCCEEEEEEec
Confidence            4  4556776665422 21100                                      01234699999988765543


Q ss_pred             -C--cEEEEEeCCCCcceeeeeecCcccEEEEEEeec
Q 010296          444 -G--SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAK  477 (513)
Q Consensus       444 -g--~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp  477 (513)
                       |  .|+++++...  ....+..  +.+.+...+|+|
T Consensus       414 ~g~~~l~~~~~~G~--~~~~l~~--~~g~~~~p~Wsp  446 (448)
T PRK04792        414 QGKQVLAAVSIDGR--FKARLPA--GQGEVKSPAWSP  446 (448)
T ss_pred             CCceEEEEEECCCC--ceEECcC--CCCCcCCCccCC
Confidence             3  3666676433  2233322  345677788887

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=6.9e-13  Score=136.30  Aligned_cols=199  Identities=17%  Similarity=0.294  Sum_probs=159.8

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      +.|-..|.++.-+|...+.+||+.||.|++|....+..+.++                 ...+. ..|+.+.|+.+|+.+
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~-----------------rt~g~-s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF-----------------RTAGN-SRVTRSRFNHQGNKF 2266 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe-----------------eccCc-chhhhhhhcccCCce
Confidence            345567889999999999999999999999999988877665                 22233 779999999999999


Q ss_pred             EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe---CCCcEEEEeCCCC---ceeEEeecccCCeEE
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS---FDRTVKIWNAEDR---AYISTLFGHQSEVLT  309 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~v~~  309 (513)
                      ..+..||.+.+|.+. .++....+.|....+.+.|-.  ..+++++   .++.+.+||..-.   .++.  ..|.+.+++
T Consensus      2267 ~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATV 2341 (2439)
T ss_pred             eeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceE
Confidence            999999999999976 677777888999999999876  5577654   4789999996532   2333  679999999


Q ss_pred             EEeeCCCe-EEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296          310 IDCLRKER-VLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       310 ~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      +++.|... +++|+.+|.|++||++..+.......        +.....|++|+..|.|+||++.....++++...|
T Consensus      2342 l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             EEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccchhhcCchhh
Confidence            99999765 55999999999999987665422111        3344468999999999999999988888777655

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.40  E-value=7.3e-10  Score=114.94  Aligned_cols=335  Identities=14%  Similarity=0.161  Sum_probs=195.8

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccc----------------cCCChhh-hccCCCC-------CC
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKY----------------LWPSEEV-LKSHGAK-------DP  212 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~----------------~~~~~~~-~~~~~~~-------~~  212 (513)
                      .-...|.|++||||+..|+..+.+++|.+-.- +...+..                =|...++ +.....+       .|
T Consensus       118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p  196 (928)
T PF04762_consen  118 SVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP  196 (928)
T ss_pred             EEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence            34678999999999999999998888877642 1211111                1111111 0000000       11


Q ss_pred             ------CCCCCCCcccEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEE
Q 010296          213 ------QGRATKQSKHILALAVSSDGRYLASGGL------DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSG  280 (513)
Q Consensus       213 ------~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  280 (513)
                            ...+. +...-..|+|-.||.+||+.+.      -..|+||+-+ |....+-..-.+--.+++|.|.|++|++.
T Consensus       197 ~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~  274 (928)
T PF04762_consen  197 TVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASS  274 (928)
T ss_pred             CCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEE
Confidence                  11222 4556778999999999998774      2579999954 66555544444445678999999999877


Q ss_pred             eC---CCcEEEEeCCC---CceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee----EEecCCCCeeEE
Q 010296          281 SF---DRTVKIWNAED---RAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL----VFRAPASSLECC  350 (513)
Q Consensus       281 ~~---dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~v~~~  350 (513)
                      -.   ...|.+|.-+.   ++....+......|..+.|++++.+++.-....|.+|...+-.-.    ........+..+
T Consensus       275 q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~  354 (928)
T PF04762_consen  275 QRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFV  354 (928)
T ss_pred             EEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCce
Confidence            54   34566666433   222222223556899999999998887766667999988765422    222233345559


Q ss_pred             EeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCC-CcCCCCCcceEEE
Q 010296          351 CFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPG-SYHSSSAYSWVSS  427 (513)
Q Consensus       351 ~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~i~~  427 (513)
                      .|+|..  +|...+.+|.+..+++.-....   ....+........--++..+.+..-....+++. ..........|.+
T Consensus       355 ~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~---s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~  431 (928)
T PF04762_consen  355 KWDPEKPLRLHVLTSNGQYEIYDFAWDVSR---SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND  431 (928)
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEEEEEEe---cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence            999965  4777777788877664211000   000000000001111122222222222222221 1122334567999


Q ss_pred             EEEecCCCEEEEecCCCcEEEEEeCCCCcc----ee---eeee--------cCcccEEEEEEeecCCCEEEEEecC--CC
Q 010296          428 VTVCGGSDLAASGAGNGSVRLWAIESETKD----IQ---PLYN--------LPLVGFVNSLAFAKSGQFLIAGVGQ--EP  490 (513)
Q Consensus       428 ~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~----~~---~~~~--------~~~~~~v~~v~~sp~~~~l~~~~~~--dg  490 (513)
                      ++|++++..+++-..||.|.+|........    ..   .+..        ......+..++|..+..++++....  -.
T Consensus       432 vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (928)
T PF04762_consen  432 VAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQS  511 (928)
T ss_pred             EEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccc
Confidence            999999988999999999999996543211    00   0000        0124557889998888777766443  36


Q ss_pred             ccccccc
Q 010296          491 RLGRWGH  497 (513)
Q Consensus       491 ~v~~W~~  497 (513)
                      .+.+++.
T Consensus       512 ~i~~~~~  518 (928)
T PF04762_consen  512 KIVLVDI  518 (928)
T ss_pred             eEEEEEe
Confidence            7777766

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.40  E-value=9.7e-10  Score=100.23  Aligned_cols=235  Identities=9%  Similarity=0.010  Sum_probs=147.0

Q ss_pred             ECCCCCeEEEEeC----------CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          167 LSEDDSKGFSASK----------DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       167 ~s~~~~~l~t~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      +|||++.|+++..          +..|.+||+.+.+.+..+.-...         |.   .........++++|+|++|+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~---------p~---~~~~~~~~~~~ls~dgk~l~  120 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG---------PR---FLVGTYPWMTSLTPDNKTLL  120 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC---------ch---hhccCccceEEECCCCCEEE
Confidence            9999999987765          78999999999998876621100         00   00122345789999999999


Q ss_pred             EEe-C-CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC-Cce-eEE---eecccCCeEE
Q 010296          237 SGG-L-DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED-RAY-IST---LFGHQSEVLT  309 (513)
Q Consensus       237 s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~---~~~~~~~v~~  309 (513)
                      +.. . +..|.++|+.+++.+..+.-. +...-+..+.. .++ +-+.||......+.. ++. ...   +.....++..
T Consensus       121 V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~-~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~  197 (352)
T TIGR02658       121 FYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTAND-TFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLIN  197 (352)
T ss_pred             EecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCC-ccE-EEeecCceEEEEecCCCceEEeeeeeecCCcccccc
Confidence            776 3 689999999999998877642 12222222222 222 223344444433322 211 111   1110001000


Q ss_pred             -EEeeC-CCeEEEEeCCCcEEEEecCCCeee-----EEec--------CCCCeeEEEeecCCe-EEE-Ee---------C
Q 010296          310 -IDCLR-KERVLTVGRDRSMQLWKVPEESRL-----VFRA--------PASSLECCCFISNDE-FLS-GS---------D  363 (513)
Q Consensus       310 -~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~-----~~~~--------~~~~v~~~~~~~~~~-~~~-~~---------~  363 (513)
                       -.+.+ ++..+-.+..|+|++.|+......     ....        ....+.-+++++++. +++ ..         .
T Consensus       198 rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~  277 (352)
T TIGR02658       198 HPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA  277 (352)
T ss_pred             CCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence             03344 777776666699999996543221     1110        123344589998875 333 21         2


Q ss_pred             CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EEEEec-
Q 010296          364 DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LAASGA-  441 (513)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~-  441 (513)
                      .+.|.++|..+++.+..+.....                                      +..++++|+++ +|++.. 
T Consensus       278 ~~~V~ViD~~t~kvi~~i~vG~~--------------------------------------~~~iavS~Dgkp~lyvtn~  319 (352)
T TIGR02658       278 SRFLFVVDAKTGKRLRKIELGHE--------------------------------------IDSINVSQDAKPLLYALST  319 (352)
T ss_pred             CCEEEEEECCCCeEEEEEeCCCc--------------------------------------eeeEEECCCCCeEEEEeCC
Confidence            25799999999999999876543                                      89999999999 888766 


Q ss_pred             CCCcEEEEEeCCC
Q 010296          442 GNGSVRLWAIESE  454 (513)
Q Consensus       442 ~dg~v~vwd~~~~  454 (513)
                      .++.|.++|+.++
T Consensus       320 ~s~~VsViD~~t~  332 (352)
T TIGR02658       320 GDKTLYIFDAETG  332 (352)
T ss_pred             CCCcEEEEECcCC
Confidence            5788999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.39  E-value=1.9e-11  Score=120.10  Aligned_cols=191  Identities=15%  Similarity=0.290  Sum_probs=148.7

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCC----eEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296          226 LAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGP----VSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       226 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      ..+.-....++.++.+..+.+||...+.....+......    ..-+.++++.-++++|+.-+.|.+|+.........+.
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~  172 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK  172 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence            334445667888888999999999887776666532211    1122346666789999999999999998544444688


Q ss_pred             cccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCee
Q 010296          302 GHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPV  378 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  378 (513)
                      +|.+.|.++.++.+| ++++++.|.++++|++.+....  ...+|...+..+++.|+ .+++++.|.+.++|+... +.+
T Consensus       173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~-~~l  250 (967)
T KOG0974|consen  173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNG-TQL  250 (967)
T ss_pred             ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEeccc-cee
Confidence            999999999999988 5569999999999999987765  57789999999999999 899999999999996543 333


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      ..+..+..                                    ..|..++..++...++|++.||.+++|++...
T Consensus       251 ~~y~~h~g------------------------------------~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  251 EVYDEHSG------------------------------------KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             hhhhhhhh------------------------------------cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            33332221                                    22999999999999999999999999998764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=2.1e-10  Score=105.14  Aligned_cols=268  Identities=11%  Similarity=0.126  Sum_probs=174.9

Q ss_pred             CeEEEEECCCCCeEEEEeC-----------CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          161 SVTAVALSEDDSKGFSASK-----------DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      .|.-+.|||+.+||+|-+.           ...++|||+.+|...+.+...                ......-.-+.||
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~----------------~~~~~~WP~frWS  314 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI----------------KSPYLKWPIFRWS  314 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc----------------CCCccccceEEec
Confidence            5889999999999998763           257999999999988765211                1111112346899


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-----CCcEEEEeCCCCceeEEeeccc
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-----DRTVKIWNAEDRAYISTLFGHQ  304 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~  304 (513)
                      .|++++|.-.. ..|.||+..+-.++..-.-.-..|....|+|.++.||--.-     -..+.+-.+.+++.+++..-+.
T Consensus       315 ~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn  393 (698)
T KOG2314|consen  315 HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN  393 (698)
T ss_pred             cCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee
Confidence            99999998776 56999997765444333334567888999999888874322     2457777888877777665555


Q ss_pred             CCeEEEEeeCCCeEEEEeCC-----------CcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEe---CCCCEE
Q 010296          305 SEVLTIDCLRKERVLTVGRD-----------RSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGS---DDGSIE  368 (513)
Q Consensus       305 ~~v~~~~~~~~~~~~~~~~d-----------~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~---~dg~i~  368 (513)
                      -.=..+.|..+|.+++.-.+           .++-|+.++..... ........|...+|-|.|. |++.+   ...++.
T Consensus       394 VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvs  473 (698)
T KOG2314|consen  394 VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVS  473 (698)
T ss_pred             eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccccccee
Confidence            44456677777766554322           12445555443322 2334456778889999884 54332   245677


Q ss_pred             EEecCC-CC---eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe---c
Q 010296          369 LWSLLR-KK---PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG---A  441 (513)
Q Consensus       369 iwd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g---~  441 (513)
                      +|-+.+ ..   .+..+.                                       ....+.+.|+|.|++++.+   |
T Consensus       474 fY~~e~~~~~~~lVk~~d---------------------------------------k~~~N~vfwsPkG~fvvva~l~s  514 (698)
T KOG2314|consen  474 FYAVETNIKKPSLVKELD---------------------------------------KKFANTVFWSPKGRFVVVAALVS  514 (698)
T ss_pred             EEEeecCCCchhhhhhhc---------------------------------------ccccceEEEcCCCcEEEEEEecc
Confidence            777663 11   111111                                       1227889999999998876   4


Q ss_pred             CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEec
Q 010296          442 GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVG  487 (513)
Q Consensus       442 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~  487 (513)
                      ..|.+.++|+.-.  .++......| ...+.+.|.|.|+|++++++
T Consensus       515 ~~g~l~F~D~~~a--~~k~~~~~eh-~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  515 RRGDLEFYDTDYA--DLKDTASPEH-FAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             cccceEEEecchh--hhhhccCccc-cccccceECCCCCEEEEeee
Confidence            5789999998742  1222222223 34677999999999999843

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.9e-10  Score=111.88  Aligned_cols=208  Identities=10%  Similarity=0.035  Sum_probs=134.5

Q ss_pred             cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC---CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-E
Q 010296          243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD---RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-V  318 (513)
Q Consensus       243 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  318 (513)
                      .|.++|...+.. ..+..+...+....|+|+|+.|+..+.+   ..|.+|++.+++... +....+.+....|+|++. +
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            477888765543 4444567789999999999998866543   369999998876533 333344556789999985 4


Q ss_pred             E-EEeCCC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCC--CEEEEecCCCCeeEEeecCCCcccCC
Q 010296          319 L-TVGRDR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDG--SIELWSLLRKKPVYIVKNAHPLLDGL  391 (513)
Q Consensus       319 ~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~  391 (513)
                      + +...++  .|++||+.++....+..+........|+|+|. ++..+ .+|  .|+++++.+++........       
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-------  330 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-------  330 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-------
Confidence            4 344444  68888998877655555555566778999986 44333 333  4677777776643321100       


Q ss_pred             CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC-C--cEEEEEeCCCCcceeeeeecCccc
Q 010296          392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN-G--SVRLWAIESETKDIQPLYNLPLVG  468 (513)
Q Consensus       392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-g--~v~vwd~~~~~~~~~~~~~~~~~~  468 (513)
                                                     .......|+|+|++|+..+.. +  .|.+||+.++.  ...+...   .
T Consensus       331 -------------------------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~--~~~lt~~---~  374 (430)
T PRK00178        331 -------------------------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS--VRILTDT---S  374 (430)
T ss_pred             -------------------------------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCC--EEEccCC---C
Confidence                                           013456899999998877643 3  58888988762  2333221   1


Q ss_pred             EEEEEEeecCCCEEEEEecCCCccccc
Q 010296          469 FVNSLAFAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W  495 (513)
                      ......|+|||++|+.+....|.-.+|
T Consensus       375 ~~~~p~~spdg~~i~~~~~~~g~~~l~  401 (430)
T PRK00178        375 LDESPSVAPNGTMLIYATRQQGRGVLM  401 (430)
T ss_pred             CCCCceECCCCCEEEEEEecCCceEEE
Confidence            223468999999998885555554444

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=5.1e-10  Score=107.52  Aligned_cols=218  Identities=11%  Similarity=-0.018  Sum_probs=129.7

Q ss_pred             CcccEEEEEEcCCCCE--E-EEEeCC--CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-CC----cEEE
Q 010296          219 QSKHILALAVSSDGRY--L-ASGGLD--RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-DR----TVKI  288 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~--l-~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~i  288 (513)
                      ....+.+-.|+|||+.  + ++...+  ..|.+.++.+++.... ....+......|+|||+.|+..+. +|    .+.+
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            3445667799999975  2 233333  4588888887764332 223445567899999998886543 22    3444


Q ss_pred             EeCCCC---ceeEEeecccCCeEEEEeeCCCe-EEEEe-CCCcEEEE--ecCC--CeeeEEecCCCCeeEEEeecCCe-E
Q 010296          289 WNAEDR---AYISTLFGHQSEVLTIDCLRKER-VLTVG-RDRSMQLW--KVPE--ESRLVFRAPASSLECCCFISNDE-F  358 (513)
Q Consensus       289 wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~iw--d~~~--~~~~~~~~~~~~v~~~~~~~~~~-~  358 (513)
                      |++..+   .................|+|+|. ++..+ .++...+|  ++..  +....+......+....|+|+|. +
T Consensus       262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence            776653   22222222233446789999985 55444 45654555  4432  22333333445667889999996 4


Q ss_pred             EEEeC-C--CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC
Q 010296          359 LSGSD-D--GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD  435 (513)
Q Consensus       359 ~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  435 (513)
                      +..+. +  ..|.+||+.+++........                                      ..+....|+|+|+
T Consensus       342 af~~~~~g~~~I~v~dl~~g~~~~Lt~~~--------------------------------------~~~~~p~wSpDG~  383 (428)
T PRK01029        342 AFCSVIKGVRQICVYDLATGRDYQLTTSP--------------------------------------ENKESPSWAIDSL  383 (428)
T ss_pred             EEEEcCCCCcEEEEEECCCCCeEEccCCC--------------------------------------CCccceEECCCCC
Confidence            43332 2  46899999888754332110                                      1156788999999


Q ss_pred             EEEEecC---CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCC
Q 010296          436 LAASGAG---NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSG  479 (513)
Q Consensus       436 ~l~~g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  479 (513)
                      +|+..+.   ...|++|++..+.  ...+..  ..+.+...+|+|-.
T Consensus       384 ~L~f~~~~~g~~~L~~vdl~~g~--~~~Lt~--~~g~~~~p~Ws~~~  426 (428)
T PRK01029        384 HLVYSAGNSNESELYLISLITKK--TRKIVI--GSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEEEECCCCCceEEEEECCCCC--EEEeec--CCCcccCceecCCC
Confidence            8775432   3568888887762  233332  34556778888753

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=2.6e-10  Score=109.53  Aligned_cols=208  Identities=14%  Similarity=0.078  Sum_probs=130.2

Q ss_pred             hhhhccCCCeEEEEECCCCCeE---EEEeCC--ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          153 RVLLKHRQSVTAVALSEDDSKG---FSASKD--GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l---~t~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      +.+......+..-+|+|||+.+   ++...+  ..|.+.++.++.....                    ..........+
T Consensus       178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l--------------------t~~~g~~~~p~  237 (428)
T PRK01029        178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI--------------------LALQGNQLMPT  237 (428)
T ss_pred             eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe--------------------ecCCCCccceE
Confidence            3444456667788999999752   244444  3577778887764331                    12233455689


Q ss_pred             EcCCCCEEEEEeC-----CCcEEEEeCCCc---ceeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEE--eCCC-Cc
Q 010296          228 VSSDGRYLASGGL-----DRHIHLWDTRIQ---EHIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIW--NAED-RA  295 (513)
Q Consensus       228 ~s~~~~~l~s~~~-----dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~-~~  295 (513)
                      |||||+.|+..+.     +-.+.+|++..+   ........+.......+|+|+|+.|+..+ .+|...+|  ++.. +.
T Consensus       238 wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~  317 (428)
T PRK01029        238 FSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ  317 (428)
T ss_pred             ECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence            9999998887653     223444776653   33333332333456789999999887655 46654455  4432 23


Q ss_pred             eeEEeecccCCeEEEEeeCCCeEE-EEeC---CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeC--CCCE
Q 010296          296 YISTLFGHQSEVLTIDCLRKERVL-TVGR---DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSD--DGSI  367 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~--dg~i  367 (513)
                      ....+..+...+....|+|+|..+ ..+.   ...|.+||+.++....+......+....|+|+|. ++ ++..  ...|
T Consensus       318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L  397 (428)
T PRK01029        318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL  397 (428)
T ss_pred             ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence            344454455567788999998644 4433   2469999998887765554444567789999986 43 3332  3568


Q ss_pred             EEEecCCCCeeEE
Q 010296          368 ELWSLLRKKPVYI  380 (513)
Q Consensus       368 ~iwd~~~~~~~~~  380 (513)
                      .+|++.+++....
T Consensus       398 ~~vdl~~g~~~~L  410 (428)
T PRK01029        398 YLISLITKKTRKI  410 (428)
T ss_pred             EEEECCCCCEEEe
Confidence            8889887765443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.36  E-value=4.9e-12  Score=130.29  Aligned_cols=189  Identities=13%  Similarity=0.293  Sum_probs=155.3

Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296          217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      ..+-..|.++.-+|...+.++|+.||.|++|....++.+..++. ....|+.+.|+.+|+.+..+..||.+.+|.+. .+
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence            34556788899999999999999999999999998888777653 33789999999999999999999999999987 56


Q ss_pred             eeEEeecccCCeEEEEeeCCCeEEEEe---CCCcEEEEecCCC--eeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEE
Q 010296          296 YISTLFGHQSEVLTIDCLRKERVLTVG---RDRSMQLWKVPEE--SRLVFRAPASSLECCCFISNDE-FLSGSDDGSIEL  369 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~~~~~~~~---~d~~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~i  369 (513)
                      +....+.|......+.|.. ..+++++   .++.+.+||....  .......|...++++++.|... |++|+.+|.|++
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred             ceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence            6667778888888888876 3344444   4789999997433  3345588999999999999986 779999999999


Q ss_pred             EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296          370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW  449 (513)
Q Consensus       370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw  449 (513)
                      ||++..+.+++++.                                              +. ...+|++|+..|.|+||
T Consensus      2363 ~D~rqrql~h~~~~----------------------------------------------~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA----------------------------------------------LD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred             eehHHHHHHHHhhh----------------------------------------------hh-hhheeeccCcccceEEE
Confidence            99999887777652                                              22 34689999999999999


Q ss_pred             EeCCC
Q 010296          450 AIESE  454 (513)
Q Consensus       450 d~~~~  454 (513)
                      ++...
T Consensus      2396 ~~s~~ 2400 (2439)
T KOG1064|consen 2396 RLSEF 2400 (2439)
T ss_pred             Ecccc
Confidence            99876

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.36  E-value=7.2e-10  Score=105.96  Aligned_cols=263  Identities=12%  Similarity=0.061  Sum_probs=163.9

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT  249 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~  249 (513)
                      .+..+++++.+|.|..+|..+++.+......                 .  ........  ++..+++++.++.++.+|.
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~-----------------~--~~~~~p~v--~~~~v~v~~~~g~l~ald~  122 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLD-----------------E--RLSGGVGA--DGGLVFVGTEKGEVIALDA  122 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCC-----------------C--CcccceEE--cCCEEEEEcCCCEEEEEEC
Confidence            3668889999999999999999876543100                 0  00011122  4667888888999999999


Q ss_pred             CCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE-----EEEeeCCCeEEEEeCC
Q 010296          250 RIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL-----TIDCLRKERVLTVGRD  324 (513)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~d  324 (513)
                      .+|+.+...... ..+.+.-.. .+..++.++.+|.|+.||..+++.+..+......+.     +... .++.++++..+
T Consensus       123 ~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~  199 (377)
T TIGR03300       123 EDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAG  199 (377)
T ss_pred             CCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCC
Confidence            999987665532 222221111 245677788899999999999998877653322111     1111 24667788888


Q ss_pred             CcEEEEecCCCeeeEEecCCC-----C------eeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCC
Q 010296          325 RSMQLWKVPEESRLVFRAPAS-----S------LECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKN  393 (513)
Q Consensus       325 ~~i~iwd~~~~~~~~~~~~~~-----~------v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  393 (513)
                      +.+..+|+.++..+.......     .      +.+.....++.+++++.+|.++.||..+++.+.......        
T Consensus       200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--------  271 (377)
T TIGR03300       200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--------  271 (377)
T ss_pred             CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--------
Confidence            999999998887653211100     0      111111235677788889999999999998776553110        


Q ss_pred             cccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEE
Q 010296          394 FEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSL  473 (513)
Q Consensus       394 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v  473 (513)
                                                     .....  ..+..+++++.+|.|..+|..++...... .... .....+.
T Consensus       272 -------------------------------~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~-~~~~-~~~~ssp  316 (377)
T TIGR03300       272 -------------------------------YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKN-DELK-YRQLTAP  316 (377)
T ss_pred             -------------------------------ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcc-cccc-CCccccC
Confidence                                           11111  23557888889999999999887322221 1111 1111222


Q ss_pred             EeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          474 AFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       474 ~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      ..  .+..|+++ +.+|.|.+|+..++..
T Consensus       317 ~i--~g~~l~~~-~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       317 AV--VGGYLVVG-DFEGYLHWLSREDGSF  342 (377)
T ss_pred             EE--ECCEEEEE-eCCCEEEEEECCCCCE
Confidence            22  35677777 7889999998766643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.36  E-value=2e-09  Score=97.12  Aligned_cols=165  Identities=9%  Similarity=0.047  Sum_probs=132.1

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCC-cEEEEe
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDR-HIHLWD  248 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~vwd  248 (513)
                      +|.+++..|. |...|.+...+-.++                     .+|...|.-..+..+++-++.|..|| .+-|+|
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq---------------------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd  388 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ---------------------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD  388 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE---------------------cCCCCceEEEEEccCCcceEEeccCCceEEEEe
Confidence            6788888775 667776655544433                     46777799999988888999999999 899999


Q ss_pred             CCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEe-----C
Q 010296          249 TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVG-----R  323 (513)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~  323 (513)
                      ..+++.. .+...-+.|.++..+++|++++++.....|.++|+.++.....-+...+-|+.+.|+|++++++-+     .
T Consensus       389 ~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~  467 (668)
T COG4946         389 KDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYY  467 (668)
T ss_pred             cCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCccee
Confidence            9877654 444567899999999999999999999999999999998665555567789999999999888644     3


Q ss_pred             CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe
Q 010296          324 DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE  357 (513)
Q Consensus       324 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  357 (513)
                      ...|+++|+.+++......+...=.+-+|.|+++
T Consensus       468 tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~r  501 (668)
T COG4946         468 TQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGR  501 (668)
T ss_pred             eeeEEEEecCCCeEEEecCCcccccCcccCCCCc
Confidence            5679999999988876666666666678888886

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.35  E-value=3.7e-10  Score=104.62  Aligned_cols=189  Identities=16%  Similarity=0.195  Sum_probs=149.0

Q ss_pred             CCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE------cC-----------
Q 010296          168 SEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV------SS-----------  230 (513)
Q Consensus       168 s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------s~-----------  230 (513)
                      .|-..|+|....||.++||+...++....+-|....                .+..++..|      +|           
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~----------------s~t~~~~~w~L~~~~s~~k~~~~~~~~~   65 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL----------------SGTCTYTKWGLSADYSPMKWLSLEKAKK   65 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhc----------------cCcceeEEEEEEeccchHHHHhHHHHhh
Confidence            355678999999999999999998877655332111                222333333      22           


Q ss_pred             ---CCCEEEEEeCCCcEEEEeCCCcceeeecc--CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296          231 ---DGRYLASGGLDRHIHLWDTRIQEHIQAFP--GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS  305 (513)
Q Consensus       231 ---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  305 (513)
                         +...++-|...|.|.+|++..++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+.....
T Consensus        66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~  145 (541)
T KOG4547|consen   66 ASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP  145 (541)
T ss_pred             ccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC
Confidence               33467888899999999999999888876  4999999999999999999999999999999999999999998999


Q ss_pred             CeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecC-----Ce-EE-EEeCCCCEEEEecCC
Q 010296          306 EVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISN-----DE-FL-SGSDDGSIELWSLLR  374 (513)
Q Consensus       306 ~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~-----~~-~~-~~~~dg~i~iwd~~~  374 (513)
                      .+.+++++|++.++ +++  +.|++|++.+++.+ .|.+|.++|.+++|...     |. ++ +...+..|.+|-+..
T Consensus       146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  146 LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99999999998555 444  68999999998876 78899999999999876     43 33 334455677776544

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.35  E-value=1e-10  Score=108.21  Aligned_cols=195  Identities=13%  Similarity=0.122  Sum_probs=148.4

Q ss_pred             cCCCeEEEEeCCCcEEEEeCCCCceeEEeec---ccCCeEEEEee------C--------------CC-eEEEEeCCCcE
Q 010296          272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFG---HQSEVLTIDCL------R--------------KE-RVLTVGRDRSM  327 (513)
Q Consensus       272 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~-~~~~~~~d~~i  327 (513)
                      |...+++....||.+++|+...++....+..   -.+...+..|.      |              +. .++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4457889999999999999988876655532   12233333332      2              11 24567788999


Q ss_pred             EEEecCCCeeeE---EecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccc
Q 010296          328 QLWKVPEESRLV---FRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISN  403 (513)
Q Consensus       328 ~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  403 (513)
                      .+|++..++...   ...|...|.++.++.+- .|.+++.|+.+..|+......++.+....+.                
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~----------------  146 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL----------------  146 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc----------------
Confidence            999999887763   24678889988877664 4889999999999999999988888755443                


Q ss_pred             ccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecC-----
Q 010296          404 GHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS-----  478 (513)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~-----  478 (513)
                                           +.+++++|||+.|++++.  .|++|++.+. +.+..+..  |.++|++++|-.+     
T Consensus       147 ---------------------~~sl~is~D~~~l~~as~--~ik~~~~~~k-evv~~ftg--h~s~v~t~~f~~~~~g~~  200 (541)
T KOG4547|consen  147 ---------------------VSSLCISPDGKILLTASR--QIKVLDIETK-EVVITFTG--HGSPVRTLSFTTLIDGII  200 (541)
T ss_pred             ---------------------cceEEEcCCCCEEEeccc--eEEEEEccCc-eEEEEecC--CCcceEEEEEEEeccccc
Confidence                                 899999999999999875  7999999998 44444544  8999999999988     


Q ss_pred             CCEEEEEecCCCcccccccCCCcccceEEE
Q 010296          479 GQFLIAGVGQEPRLGRWGHLPAARNGVLVH  508 (513)
Q Consensus       479 ~~~l~~~~~~dg~v~~W~~~~~~~~~~~~~  508 (513)
                      |.+++++...+-.+.+|-+....+...+..
T Consensus       201 G~~vLssa~~~r~i~~w~v~~~~kkks~~~  230 (541)
T KOG4547|consen  201 GKYVLSSAAAERGITVWVVEKEDKKKSLSC  230 (541)
T ss_pred             cceeeeccccccceeEEEEEcccccchhhe
Confidence            888888767777899998777555544433

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.34  E-value=1.2e-10  Score=100.54  Aligned_cols=200  Identities=16%  Similarity=0.281  Sum_probs=145.0

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      ...+++++.++++...|++|-..|++.-+.+..--...               .+......|...|..+-|+-...++++
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm---------------~~~r~~~~h~~~v~~~if~~~~e~V~s  131 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM---------------TFLKDYLAHQARVSAIVFSLTHEWVLS  131 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc---------------chhhhhhhhhcceeeEEecCCceeEEE
Confidence            46789999999999999999999999988775322111               112234679999999999999999999


Q ss_pred             EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC--CCceeEEeecccCCeEEEEeeCC
Q 010296          238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE--DRAYISTLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~  315 (513)
                      .+.|..+.---.+.+..+..+.- ....+++.+.-.  +.+.|...|.|.+..+.  .-..+.++.+|.+.++++.|.+.
T Consensus       132 ~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~  208 (404)
T KOG1409|consen  132 TGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG  208 (404)
T ss_pred             eccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC
Confidence            99998775555555554433221 111122222211  45566666777666553  34568889999999999999985


Q ss_pred             C-eEEEEeCCCcEEEEecCCCe--eeEEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCC
Q 010296          316 E-RVLTVGRDRSMQLWKVPEES--RLVFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       316 ~-~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~  375 (513)
                      . .++++..|..+.+||+....  .....+|...|..+...+-- .+++++.||.|.+|+++..
T Consensus       209 ~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  209 QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            4 66699999999999996554  34667788888877766654 4889999999999998764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=5.3e-10  Score=108.33  Aligned_cols=208  Identities=10%  Similarity=0.037  Sum_probs=129.5

Q ss_pred             cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-C--CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-E
Q 010296          243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-D--RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-V  318 (513)
Q Consensus       243 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  318 (513)
                      .|.++|...... +.+..+...+.+..|+|+|+.|+..+. +  ..|++||+.+++... +....+......|+|++. +
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            577778654433 344456778899999999999886654 2  258999998876432 222333445788999985 4


Q ss_pred             E-EEeCCCc--EEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCC--CEEEEecCCCCeeEEeecCCCcccCC
Q 010296          319 L-TVGRDRS--MQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDG--SIELWSLLRKKPVYIVKNAHPLLDGL  391 (513)
Q Consensus       319 ~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~  391 (513)
                      + +...++.  |+++|+.++....+..+........|+|++. ++ +...++  .|.++++.+++........       
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-------  349 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-------  349 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-------
Confidence            4 3455564  7888888776655554555567789999986 44 333344  4666677666543321110       


Q ss_pred             CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CC--cEEEEEeCCCCcceeeeeecCccc
Q 010296          392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NG--SVRLWAIESETKDIQPLYNLPLVG  468 (513)
Q Consensus       392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg--~v~vwd~~~~~~~~~~~~~~~~~~  468 (513)
                                                     ......+|+|+|++|+..+. ++  .|.++|+.++  ....+...   .
T Consensus       350 -------------------------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g--~~~~lt~~---~  393 (448)
T PRK04792        350 -------------------------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG--AMQVLTST---R  393 (448)
T ss_pred             -------------------------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC--CeEEccCC---C
Confidence                                           00334689999998877654 34  3555666665  22333221   1


Q ss_pred             EEEEEEeecCCCEEEEEecCCCccccc
Q 010296          469 FVNSLAFAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W  495 (513)
                      ......|+|||++|+.+...+|.-.+|
T Consensus       394 ~d~~ps~spdG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        394 LDESPSVAPNGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             CCCCceECCCCCEEEEEEecCCceEEE
Confidence            122347999999998886666654344

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.33  E-value=1.3e-09  Score=99.15  Aligned_cols=274  Identities=15%  Similarity=0.172  Sum_probs=178.8

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCc---------------eEEEEeCCCCccccccCCChhh--------------------
Q 010296          159 RQSVTAVALSEDDSKGFSASKDG---------------SILHWDVSSGKGVKYLWPSEEV--------------------  203 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~--------------------  203 (513)
                      ...|..+.|+|.++||.|-+..+               .+.+||+.++..+..+......                    
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv  150 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV  150 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence            35689999999999999987544               4999999998876654211111                    


Q ss_pred             ---hccCCCCC--CCCC-CCCCcccEEEEEEcCCC--CEEEE-----EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEE
Q 010296          204 ---LKSHGAKD--PQGR-ATKQSKHILALAVSSDG--RYLAS-----GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTF  270 (513)
Q Consensus       204 ---~~~~~~~~--~~~~-~~~~~~~v~~~~~s~~~--~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  270 (513)
                         +..+....  .... ..-....|....|+|-+  ..|+.     .+..+.+++|.+..+..+.+-.-....=..+.|
T Consensus       151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW  230 (561)
T COG5354         151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW  230 (561)
T ss_pred             cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence               00000000  0000 00113568888999953  34454     346788999999877665543333333456889


Q ss_pred             ecCCCeEEEEe-----------CCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEE--EEeCCCcEEEEecCCCe
Q 010296          271 RQGTSELFSGS-----------FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVL--TVGRDRSMQLWKVPEES  336 (513)
Q Consensus       271 ~~~~~~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~d~~i~iwd~~~~~  336 (513)
                      .+.|++|+.--           ....++|+++.... +.......++|..++|.|.+ +|+  +|-..-.+.+++++.+ 
T Consensus       231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-  308 (561)
T COG5354         231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-  308 (561)
T ss_pred             ecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-
Confidence            99998876321           12468888887443 33333568899999999965 454  4457889999999987 


Q ss_pred             eeEEecCCCCeeEEEeecCCe-EEEEe---CCCCEEEEecCCCCeeE-EeecCCCcccCCCCcccCcCccccccCCCCCC
Q 010296          337 RLVFRAPASSLECCCFISNDE-FLSGS---DDGSIELWSLLRKKPVY-IVKNAHPLLDGLKNFEQDEGKISNGHSENGNL  411 (513)
Q Consensus       337 ~~~~~~~~~~v~~~~~~~~~~-~~~~~---~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  411 (513)
                       +.+..+...-..+.|+|.++ ++.++   ..|.|-+|+......+. .+....                          
T Consensus       309 -l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--------------------------  361 (561)
T COG5354         309 -LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--------------------------  361 (561)
T ss_pred             -eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--------------------------
Confidence             55666667777889999986 44433   35889999987654433 333211                          


Q ss_pred             CCCCcCCCCCcceEEEEEEecCCCEEEEec------CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE
Q 010296          412 NPGSYHSSSAYSWVSSVTVCGGSDLAASGA------GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       412 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~------~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~  485 (513)
                                   .+-+.|+|++.++.+..      .|..|.||++... ..   +       ..+.+.|.|.|++..+.
T Consensus       362 -------------~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~-~~---f-------el~~~~W~p~~~~~tts  417 (561)
T COG5354         362 -------------TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA-KV---F-------ELTNITWDPSGQYVTTS  417 (561)
T ss_pred             -------------ceEeeccCCceEEEecCCCcccccCcceEEEEecCc-hh---h-------hhhhccccCCcccceee
Confidence                         45567999999888764      4788999999765 11   1       24557787777776555

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.32  E-value=4.5e-10  Score=95.02  Aligned_cols=204  Identities=13%  Similarity=0.082  Sum_probs=142.8

Q ss_pred             CCCeEEEEECC---CCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296          159 RQSVTAVALSE---DDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY  234 (513)
Q Consensus       159 ~~~V~~~~~s~---~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  234 (513)
                      +..++.|.|.-   +|. .|+-+-..|.|.+|..........+.+-.             ...-......++.|++.+..
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls-------------~~ki~~~~~lslD~~~~~~~  135 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS-------------SKKISVVEALSLDISTSGTK  135 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc-------------hhhhhheeeeEEEeeccCce
Confidence            45667777753   444 45667778889988876544333321100             00001113568899999999


Q ss_pred             EEEEeCCCcEEEEeCCCcce--eeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCC-CCceeEE-eecccCCeEE
Q 010296          235 LASGGLDRHIHLWDTRIQEH--IQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAE-DRAYIST-LFGHQSEVLT  309 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~  309 (513)
                      ++++..+|.+.+-+......  ++.++.|...++...|+... +.+++|+.|+.+..||++ .++.+.. .+.|...|.+
T Consensus       136 i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~S  215 (339)
T KOG0280|consen  136 IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVS  215 (339)
T ss_pred             EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEE
Confidence            99999999999666554443  44788999999999997644 567899999999999999 3444443 4568899999


Q ss_pred             EEeeCC--CeEEEEeCCCcEEEEecCCC-eeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCC
Q 010296          310 IDCLRK--ERVLTVGRDRSMQLWKVPEE-SRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       310 ~~~~~~--~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~  375 (513)
                      |..+|.  ..+++|+.|..|++||.+.. +++......+.|..+..+|.-.  ++.++.-.-.+|.+...+
T Consensus       216 I~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  216 IYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK  286 (339)
T ss_pred             EecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence            998874  36779999999999999854 4444445568899999998653  445554444677776554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.29  E-value=9.9e-09  Score=108.78  Aligned_cols=256  Identities=13%  Similarity=0.159  Sum_probs=160.3

Q ss_pred             EEEEEcCC-CCEEEEEeCCCcEEEEeCCCcceeeeccC--------------cCCCeEEEEEecCCCeEEEEeC-CCcEE
Q 010296          224 LALAVSSD-GRYLASGGLDRHIHLWDTRIQEHIQAFPG--------------HRGPVSCLTFRQGTSELFSGSF-DRTVK  287 (513)
Q Consensus       224 ~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~-dg~i~  287 (513)
                      ..+++++. +.++++-+..+.|++||.. +..+..+.+              +-.....+++.++++.|+++.. ++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            56788875 5667777778899999976 444433322              1123578999998887766544 57799


Q ss_pred             EEeCCCCceeEEeecc-----------------cCCeEEEEeeC-CCeEE-EEeCCCcEEEEecCCCeeeEEecC-----
Q 010296          288 IWNAEDRAYISTLFGH-----------------QSEVLTIDCLR-KERVL-TVGRDRSMQLWKVPEESRLVFRAP-----  343 (513)
Q Consensus       288 iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~-----  343 (513)
                      ++|+.++. +.++.+.                 -.....++++| ++.++ +...++.|++|+..++....+.+.     
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~  728 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN  728 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence            99987754 3333210                 11346789998 56555 556788999999877655433211     


Q ss_pred             ----------CCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcc-cCCCCcccCcCccccccCCCCC
Q 010296          344 ----------ASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLL-DGLKNFEQDEGKISNGHSENGN  410 (513)
Q Consensus       344 ----------~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~  410 (513)
                                ......++++|++.  +++-+.++.|++||+.++...... ...+.. .....+...          .+.
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~-gg~~~~~~~l~~fG~~----------dG~  797 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA-GGDPTFSDNLFKFGDH----------DGV  797 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE-ecccccCcccccccCC----------CCc
Confidence                      12355689999874  556677899999999877542211 111000 000000000          000


Q ss_pred             CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC------------cccEEEEEEeecC
Q 010296          411 LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP------------LVGFVNSLAFAKS  478 (513)
Q Consensus       411 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~------------~~~~v~~v~~sp~  478 (513)
                      -      ..........++++++|.++++-+.++.|++||..++  .+..+....            .......|+++++
T Consensus       798 g------~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg--~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d  869 (1057)
T PLN02919        798 G------SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK--RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN  869 (1057)
T ss_pred             h------hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC--eEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence            0      0001112468899999999999999999999999876  222221110            1124678999999


Q ss_pred             CCEEEEEecCCCcccccccCCCc
Q 010296          479 GQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       479 ~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      |+++++- +.+++|++|+..++.
T Consensus       870 G~lyVaD-t~Nn~Irvid~~~~~  891 (1057)
T PLN02919        870 GRLFVAD-TNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCEEEEE-CCCCEEEEEECCCCc
Confidence            9876666 888999999987653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.29  E-value=4.1e-09  Score=109.51  Aligned_cols=310  Identities=14%  Similarity=0.114  Sum_probs=180.5

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEE----eCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHW----DVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR  233 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  233 (513)
                      ..+.|.++.|-++...++.+..+|.|.+.    +..+.....                    ...-...|.+++||||+.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~E  133 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDEE  133 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCcC
Confidence            45789999999999999999999999999    444333211                    122356799999999999


Q ss_pred             EEEEEeCCCcEEEEeCC---------------C--------cceeeeccC------------------------cCCCeE
Q 010296          234 YLASGGLDRHIHLWDTR---------------I--------QEHIQAFPG------------------------HRGPVS  266 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~---------------~--------~~~~~~~~~------------------------~~~~v~  266 (513)
                      .|+..+.+++|.+-+-.               .        |+.-..|.|                        +...-.
T Consensus       134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~  213 (928)
T PF04762_consen  134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRV  213 (928)
T ss_pred             EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCce
Confidence            99999989888876411               0        111111111                        222446


Q ss_pred             EEEEecCCCeEEEEeC---C---CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeC----CCcEEEEecCCCe
Q 010296          267 CLTFRQGTSELFSGSF---D---RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR----DRSMQLWKVPEES  336 (513)
Q Consensus       267 ~~~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~iwd~~~~~  336 (513)
                      .|+|..||.++++.+.   .   ..|+||+-. |....+...-.+--.+++|.|.|.++++..    ...|.+|.-..-+
T Consensus       214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr  292 (928)
T PF04762_consen  214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR  292 (928)
T ss_pred             EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE
Confidence            7899999999997764   2   579999965 555544444444456889999998886664    3567777755444


Q ss_pred             eeEEe----cCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCC
Q 010296          337 RLVFR----APASSLECCCFISNDEFLSGSDDGSIELWSLLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN  410 (513)
Q Consensus       337 ~~~~~----~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  410 (513)
                      .-.+.    .....+..+.|++++.+++......|.+|-..+..-  .+.+............+.+...........++.
T Consensus       293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~  372 (928)
T PF04762_consen  293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ  372 (928)
T ss_pred             eeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc
Confidence            33332    335678999999999855444455599999887542  222221111110111111111110000000011


Q ss_pred             CCCCCcCCCCCcceEEEEEEecC-----CCEEEEecCCCcEEEEEeCCCCcc-eeeeeecCcccEEEEEEeecCCCEEEE
Q 010296          411 LNPGSYHSSSAYSWVSSVTVCGG-----SDLAASGAGNGSVRLWAIESETKD-IQPLYNLPLVGFVNSLAFAKSGQFLIA  484 (513)
Q Consensus       411 ~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~g~~dg~v~vwd~~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~~  484 (513)
                      +.        ...+...++.++.     ...+++-.. ..+.|-.++....+ .-....+....+|.+++|++++..+++
T Consensus       373 ~~--------~~~~~~~v~~s~~~~~~D~g~vaVIDG-~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av  443 (928)
T PF04762_consen  373 YE--------IYDFAWDVSRSPGSSPNDNGTVAVIDG-NKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV  443 (928)
T ss_pred             EE--------EEEEEEEEEecCCCCccCceEEEEEeC-CeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE
Confidence            00        0111222222221     112222211 24555555443111 111233335688999999999987777


Q ss_pred             EecCCCcccccccC
Q 010296          485 GVGQEPRLGRWGHL  498 (513)
Q Consensus       485 ~~~~dg~v~~W~~~  498 (513)
                      - ..||.|.+|...
T Consensus       444 l-~~d~~l~~~~~~  456 (928)
T PF04762_consen  444 L-TSDGSLSIYEWD  456 (928)
T ss_pred             E-ECCCCEEEEEec
Confidence            6 789999998743

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=9e-10  Score=101.40  Aligned_cols=271  Identities=13%  Similarity=0.107  Sum_probs=173.6

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEE-----eC-----CCcEEEE
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSG-----SF-----DRTVKIW  289 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg~i~iw  289 (513)
                      ..++...+++++|++++.+. +..+.|++..++..+.+....  .+.++.|+|-+.+|.+-     ..     .-.+.+|
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~  110 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY  110 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence            34478889999999888776 678999999888655444423  78999999999998762     12     2357799


Q ss_pred             eCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe---EE-----EE
Q 010296          290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE---FL-----SG  361 (513)
Q Consensus       290 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~---~~-----~~  361 (513)
                      ++.++.....+......-++..|+.+..+++--..+.+++|++..........+...+..+.++|.+.   ++     ..
T Consensus       111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k  190 (566)
T KOG2315|consen  111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK  190 (566)
T ss_pred             eeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence            99996555444433222368889988887776677889999998877666677788899999998853   22     34


Q ss_pred             eCCCCEEEEecCCCCeeEEeecCCCcccCC--CCcccCc-Ccccccc--------CCCCC--CCC------CCcCCCCCc
Q 010296          362 SDDGSIELWSLLRKKPVYIVKNAHPLLDGL--KNFEQDE-GKISNGH--------SENGN--LNP------GSYHSSSAY  422 (513)
Q Consensus       362 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~i~~~~--------~~~~~--~~~------~~~~~~~~~  422 (513)
                      +.-+.|+||.+.-......+....-....-  ..+...+ +.+.+..        +.-|.  +..      .........
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~  270 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE  270 (566)
T ss_pred             CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence            566789999876322111111000000000  0000000 0110000        00000  000      001113446


Q ss_pred             ceEEEEEEecCCCEEEE--ecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecC--CCcccccccC
Q 010296          423 SWVSSVTVCGGSDLAAS--GAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ--EPRLGRWGHL  498 (513)
Q Consensus       423 ~~i~~~~~s~~~~~l~~--g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~--dg~v~~W~~~  498 (513)
                      ++|.++.|+|+++-+++  |-.-..+.|||++..     ++..+ ..++-+++-|+|.|++|+.++-.  .|.|-+||+.
T Consensus       271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            78999999999976654  445678999998765     33333 46788999999999998877322  3899999987


Q ss_pred             C
Q 010296          499 P  499 (513)
Q Consensus       499 ~  499 (513)
                      .
T Consensus       345 n  345 (566)
T KOG2315|consen  345 N  345 (566)
T ss_pred             c
Confidence            6

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.28  E-value=3.2e-09  Score=101.51  Aligned_cols=258  Identities=11%  Similarity=0.093  Sum_probs=156.9

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT  249 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~  249 (513)
                      ++..++.++.++.|..+|..+++.+.....                    ...+.+.... .+..++.++.+|.|+.||.
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--------------------~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~  162 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL--------------------SSEVLSPPLV-ANGLVVVRTNDGRLTALDA  162 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeecc--------------------CceeecCCEE-ECCEEEEECCCCeEEEEEc
Confidence            466788888999999999999987654310                    1111111111 2456777778999999999


Q ss_pred             CCcceeeeccCcCCCe-----EEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC----C---eEEEE---eeC
Q 010296          250 RIQEHIQAFPGHRGPV-----SCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS----E---VLTID---CLR  314 (513)
Q Consensus       250 ~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~---v~~~~---~~~  314 (513)
                      .+++.+..+......+     .+..+.  +..++.+..++.+..+|+.+++.+........    .   +..+.   ...
T Consensus       163 ~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~  240 (377)
T TIGR03300       163 ATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD  240 (377)
T ss_pred             CCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE
Confidence            9998877665332211     111222  24677888889999999999987654321100    0   00111   112


Q ss_pred             CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296          315 KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF  394 (513)
Q Consensus       315 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
                      ++.+++++.++.++.||..++......... ....... .++.+++++.+|.|..+|..+++.+........        
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--------  310 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS-SYQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKY--------  310 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccC-CccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccC--------
Confidence            567888889999999999888766433221 1112222 356778888999999999999987655421100        


Q ss_pred             ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEE
Q 010296          395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLA  474 (513)
Q Consensus       395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~  474 (513)
                                              .    ...+...  .+.+|++++.+|.|+++|..+++ .+..+..  +...+..--
T Consensus       311 ------------------------~----~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~-~~~~~~~--~~~~~~~sp  357 (377)
T TIGR03300       311 ------------------------R----QLTAPAV--VGGYLVVGDFEGYLHWLSREDGS-FVARLKT--DGSGIASPP  357 (377)
T ss_pred             ------------------------C----ccccCEE--ECCEEEEEeCCCEEEEEECCCCC-EEEEEEc--CCCccccCC
Confidence                                    0    0111122  35688999999999999998872 2222221  222222222


Q ss_pred             eecCCCEEEEEecCCCccccc
Q 010296          475 FAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       475 ~sp~~~~l~~~~~~dg~v~~W  495 (513)
                      ...++ .|+++ +.||.|..|
T Consensus       358 ~~~~~-~l~v~-~~dG~l~~~  376 (377)
T TIGR03300       358 VVVGD-GLLVQ-TRDGDLYAF  376 (377)
T ss_pred             EEECC-EEEEE-eCCceEEEe
Confidence            22344 46666 788888654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=8.6e-09  Score=98.60  Aligned_cols=211  Identities=13%  Similarity=0.130  Sum_probs=147.9

Q ss_pred             CCCcccchhhhhccCCCeEEEEECCC------------CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCC
Q 010296          145 KPEATDEFRVLLKHRQSVTAVALSED------------DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP  212 (513)
Q Consensus       145 ~~~~~~~~~~~~~h~~~V~~~~~s~~------------~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  212 (513)
                      +....+.++.+..|...|+.+.|.|-            .-.||++...|.|.+||+..+..+..+               
T Consensus        41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l---------------  105 (1062)
T KOG1912|consen   41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL---------------  105 (1062)
T ss_pred             ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh---------------
Confidence            34556777888899999999999873            125677788899999999887766543               


Q ss_pred             CCCCCCCcccEEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec-CCCeEEEEeCCCcEE
Q 010296          213 QGRATKQSKHILALAVSS---DG-RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVK  287 (513)
Q Consensus       213 ~~~~~~~~~~v~~~~~s~---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  287 (513)
                          ..|..++..++|-+   +. ..|++-....+|.+|+..+|+....+........|+.+.| +.+.+..-+..|.|.
T Consensus       106 ----~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl  181 (1062)
T KOG1912|consen  106 ----SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVL  181 (1062)
T ss_pred             ----cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEE
Confidence                56788899999977   33 4566666678999999999999888776667778888888 456666666677777


Q ss_pred             EEeCCC-------CceeEEeecccC----------------C---------eEEEEeeCCC-eEEEEeCCCcEEEEecCC
Q 010296          288 IWNAED-------RAYISTLFGHQS----------------E---------VLTIDCLRKE-RVLTVGRDRSMQLWKVPE  334 (513)
Q Consensus       288 iwd~~~-------~~~~~~~~~~~~----------------~---------v~~~~~~~~~-~~~~~~~d~~i~iwd~~~  334 (513)
                      +.+.-.       ++..+.-..|..                .         ...++|+|.- .++.......+.++|+.-
T Consensus       182 ~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~  261 (1062)
T KOG1912|consen  182 SCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY  261 (1062)
T ss_pred             EEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh
Confidence            665421       122221111111                0         1123456643 455566677899999987


Q ss_pred             Ceee-EEecCCCCeeEEEeecCCe---EEEEeCCCCEEEEecCC
Q 010296          335 ESRL-VFRAPASSLECCCFISNDE---FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       335 ~~~~-~~~~~~~~v~~~~~~~~~~---~~~~~~dg~i~iwd~~~  374 (513)
                      ...+ ......+.+.-+.+.|+.+   +++...||.+.||-.+.
T Consensus       262 ~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  262 ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            7766 3344455566677778764   77999999999997665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=9e-11  Score=110.71  Aligned_cols=240  Identities=13%  Similarity=0.171  Sum_probs=166.2

Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc---------------eeeeccCcCCCeEEEEEecCCCeEEEEeCC
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE---------------HIQAFPGHRGPVSCLTFRQGTSELFSGSFD  283 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  283 (513)
                      ......|++|+....++++|+.||.++|..+.+..               .-+++.+|.+.|.-+.|+.+.+.|-+...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            34568899999999999999999999999876432               125678999999999999998899999999


Q ss_pred             CcEEEEeCCCCceeEEe--ecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE
Q 010296          284 RTVKIWNAEDRAYISTL--FGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL  359 (513)
Q Consensus       284 g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~  359 (513)
                      |.|.+|-+-.+.....+  ....+.|.+++|+.+| ++..+-.||.|.+=.+..+...-..........+.|+++.. ++
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence            99999999887654333  2245678999999987 56678889999888877766553333334455788999986 55


Q ss_pred             EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE--------e
Q 010296          360 SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV--------C  431 (513)
Q Consensus       360 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------s  431 (513)
                      .+-.+|.+++||....-.+ .+..... ......+                        ......|..+.|        -
T Consensus       173 f~~ange~hlydnqgnF~~-Kl~~~c~-Vn~tg~~------------------------s~~~~kia~i~w~~g~~~~v~  226 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFER-KLEKDCE-VNGTGIF------------------------SNFPTKIAEIEWNTGPYQPVP  226 (1189)
T ss_pred             hhhcCCcEEEecccccHHH-hhhhceE-Eeeeeee------------------------cCCCccccceeeccCccccCC
Confidence            7777899999997543111 1100000 0000000                        000111333333        2


Q ss_pred             cCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCC
Q 010296          432 GGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQE  489 (513)
Q Consensus       432 ~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~d  489 (513)
                      |+...|+++-.+|.+.|..-.+...++.  ..  ..-.|..+.|+++|.+|+++ |.+
T Consensus       227 pdrP~lavcy~nGr~QiMR~eND~~Pvv--~d--tgm~~vgakWnh~G~vLAvc-G~~  279 (1189)
T KOG2041|consen  227 PDRPRLAVCYANGRMQIMRSENDPEPVV--VD--TGMKIVGAKWNHNGAVLAVC-GND  279 (1189)
T ss_pred             CCCCEEEEEEcCceehhhhhcCCCCCeE--Ee--cccEeecceecCCCcEEEEc-cCc
Confidence            5778999999999999887666533322  22  23568899999999999998 544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=2.5e-11  Score=111.02  Aligned_cols=289  Identities=18%  Similarity=0.212  Sum_probs=186.1

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      +..+.||+..|..++--.+.+-+++++.|.+|++|.+....-.            .+....+.++..|..+|..+.|-.+
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~------------~~tsaCQfTY~aHkk~i~~igfL~~  795 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE------------IGTSACQFTYQAHKKPIHDIGFLAD  795 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc------------cccceeeeEhhhccCcccceeeeec
Confidence            4457799999999988888899999999999999998743211            1111223356889999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccC--cCCCeEEEEEecC--CCeEEE-EeCCCcEEEEeCCCCceeEEee-----
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPG--HRGPVSCLTFRQG--TSELFS-GSFDRTVKIWNAEDRAYISTLF-----  301 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~~-~~~dg~i~iwd~~~~~~~~~~~-----  301 (513)
                      .++++++  ||.|.+||.--++++..+..  ..+.+..+..-++  ...+++ ++...+|+++|.+....+..++     
T Consensus       796 lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~  873 (1034)
T KOG4190|consen  796 LRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP  873 (1034)
T ss_pred             cceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence            8888776  78899999887776653321  2233333433333  334444 4778999999999887665543     


Q ss_pred             cccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeE-EecCCCCeeEEEeecCCeEEEEeCCCCEEE-EecCCCCee
Q 010296          302 GHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLV-FRAPASSLECCCFISNDEFLSGSDDGSIEL-WSLLRKKPV  378 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~dg~i~i-wd~~~~~~~  378 (513)
                      +....+.+++..+.|. ++++-..|.|.+.|.+++..+. .+........++...+..++....|.++.+ |....+...
T Consensus       874 ~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh  953 (1034)
T KOG4190|consen  874 GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMH  953 (1034)
T ss_pred             CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeee
Confidence            3345678999988775 5567789999999999998663 333333333444434444667777888888 887776655


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC---
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET---  455 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~---  455 (513)
                      ...+.....                                .|  ...+     -|.-|+++...+.+.||--....   
T Consensus       954 ~q~kpppep--------------------------------ah--flqs-----vgpSLV~a~~Gn~lgVYad~a~~ha~  994 (1034)
T KOG4190|consen  954 LQDKPPPEP--------------------------------AH--FLQS-----VGPSLVTAQNGNILGVYADSAELHAE  994 (1034)
T ss_pred             eccCCCCcc--------------------------------hh--hhhc-----cCceeEEeccCcEEEEEecchhhhhh
Confidence            544322110                                00  0111     13346666655666776532210   


Q ss_pred             cceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccc
Q 010296          456 KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGR  494 (513)
Q Consensus       456 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~  494 (513)
                      ..+..+..-...+..++++.-|-+.-+++| ...|.|.+
T Consensus       995 stitKiR~d~f~G~lTala~LPLN~afLaG-ne~G~IaL 1032 (1034)
T KOG4190|consen  995 STITKIRPDEFPGTLTALAPLPLNCAFLAG-NEHGAIAL 1032 (1034)
T ss_pred             hhhccccccccCCccceeeeccccchhhcc-CCCCceee
Confidence            111222222346778888888877766666 67777754

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.22  E-value=8.3e-10  Score=94.13  Aligned_cols=258  Identities=16%  Similarity=0.273  Sum_probs=167.1

Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-----eeeeccCcC------------CCeEEEEEecCC--CeEEE
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE-----HIQAFPGHR------------GPVSCLTFRQGT--SELFS  279 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~  279 (513)
                      ....|+++.|...|.||++|...|.|.+|.-....     ....|++|.            ..|..+.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34569999999999999999999999999754332     122344443            357888887654  35777


Q ss_pred             EeCCCcEEEEeCCCCc-------------------e------------------e-----EEe-ecccCCeEEEEeeCCC
Q 010296          280 GSFDRTVKIWNAEDRA-------------------Y------------------I-----STL-FGHQSEVLTIDCLRKE  316 (513)
Q Consensus       280 ~~~dg~i~iwd~~~~~-------------------~------------------~-----~~~-~~~~~~v~~~~~~~~~  316 (513)
                      .+.|.+|++|.+....                   +                  +     +.. ..|.-.+.++.+..+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            8889999999874320                   0                  0     000 2466678889998888


Q ss_pred             eEEEEeCCCcEEEEecCCCee----eEEecCC-----CCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296          317 RVLTVGRDRSMQLWKVPEESR----LVFRAPA-----SSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       317 ~~~~~~~d~~i~iwd~~~~~~----~~~~~~~-----~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      ..+..+.+-.|.+|++.-...    +-...+.     .-|++..|+|..  .|...++.|.|++-|++.....-.-....
T Consensus       185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            778778888999999864321    1222222     246778888865  36788889999999998543211100000


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP  465 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~  465 (513)
                      ...     ..              .+....+  ......|..+.|+++|+++++-+.- +|+|||++....++.++....
T Consensus       265 e~~-----~D--------------~v~~~ff--~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~  322 (460)
T COG5170         265 ELT-----ID--------------GVDVDFF--EEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHC  322 (460)
T ss_pred             hhc-----cC--------------cccchhH--HHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHH
Confidence            000     00              0000000  1112338899999999999988765 899999998866666553211


Q ss_pred             ----------cccEE---EEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          466 ----------LVGFV---NSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       466 ----------~~~~v---~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                                ....|   .-+.||.|.+.+++| +......++-+..
T Consensus       323 ~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sg-sy~NNfgiyp~~s  368 (460)
T COG5170         323 DLMDELNDVYENDAIFDKFEISFSGDDKHVLSG-SYSNNFGIYPTDS  368 (460)
T ss_pred             HHHHHHHhhhhccceeeeEEEEecCCccccccc-ccccceeeecccc
Confidence                      01223   347889998988888 7777777776443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=1.3e-10  Score=110.07  Aligned_cols=283  Identities=14%  Similarity=0.205  Sum_probs=183.6

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC--CEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG--RYLA  236 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~  236 (513)
                      .+++.++..+|.|+-+|+++.-|.+ +-|+...-....+                 ......-.|-.+.|+|..  .+-+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~-----------------l~h~tpw~vad~qws~h~a~~~wi   85 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRW-----------------LHHITPWQVADVQWSPHPAKPYWI   85 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCcee-----------------eeccCcchhcceecccCCCCceeE
Confidence            5788999999999999999987754 4466543322111                 011112236667787743  2333


Q ss_pred             EEeCCCcEEEEeCCC---cceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCc-eeEEeecccCCeEEEE
Q 010296          237 SGGLDRHIHLWDTRI---QEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRA-YISTLFGHQSEVLTID  311 (513)
Q Consensus       237 s~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~  311 (513)
                      +......-.+|++..   ...-..+.+|...|+.+-|+|+.. .|++++.|-.|..||+++.. ++..+..-......+.
T Consensus        86 Vsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVk  165 (1081)
T KOG0309|consen   86 VSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVK  165 (1081)
T ss_pred             EecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceee
Confidence            333345566898753   334456778999999999998765 57899999999999999854 4555555566677888


Q ss_pred             eeC-CCeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCC--eeEEeecC
Q 010296          312 CLR-KERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKK--PVYIVKNA  384 (513)
Q Consensus       312 ~~~-~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~--~~~~~~~~  384 (513)
                      |+- ++.+++.+..+.|.+||++.+...  ....+...+..+.|..--  .+++.+.||+|+.|+.....  .-+++...
T Consensus       166 wnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~  245 (1081)
T KOG0309|consen  166 WNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN  245 (1081)
T ss_pred             ecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc
Confidence            876 567788888999999999877543  556677778888776543  48899999999999987543  22222211


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-----------CCCEEEEecCCCcEEEEEeCC
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-----------GSDLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----------~~~~l~~g~~dg~v~vwd~~~  453 (513)
                      .+                                      |..-.+-|           .+..+-.--.++....|++.+
T Consensus       246 ~p--------------------------------------iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~  287 (1081)
T KOG0309|consen  246 FP--------------------------------------IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFD  287 (1081)
T ss_pred             Cc--------------------------------------ceeccccccCceeEeccccCCeeeeeccccchhhhhcccc
Confidence            11                                      22223333           222222222233445566666


Q ss_pred             CCcceeeeeecCcccEEEEEEeecCC---------CEEEEEecCCCcccccccCC
Q 010296          454 ETKDIQPLYNLPLVGFVNSLAFAKSG---------QFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~v~~sp~~---------~~l~~~~~~dg~v~~W~~~~  499 (513)
                      ..+++..+.+  |...|....|-..+         .+-+++.+.|..|++|-+..
T Consensus       288 ~~~pVh~F~G--H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  288 LNTPVHTFVG--HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CCcceeeecC--cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            6555665554  77777666665432         24445559999999996543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.20  E-value=5.4e-09  Score=87.47  Aligned_cols=235  Identities=11%  Similarity=0.017  Sum_probs=151.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceee-eccCcCCCeEEEEE-ecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQ-AFPGHRGPVSCLTF-RQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      ...+||.|+..|.+.+|...+.+... ....|...|+-+.= ......+..++.|.++++.++..+.....+....-.+.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            34589999999999999988665432 22334333322211 11223477788888998888866544333322223378


Q ss_pred             EEEeeCCCeEE-EEeCCCcEEEEecCCCeee----EEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCeeEEee
Q 010296          309 TIDCLRKERVL-TVGRDRSMQLWKVPEESRL----VFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       309 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      ++++++++++. +.+....|..|.+......    ........-.+..|+... .|+++..||++.|||++.........
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            89999999776 6778889999998765443    222334456677888776 49999999999999998865443332


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC--EEEEecCCCcEEEEEeCCCCcceee
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD--LAASGAGNGSVRLWAIESETKDIQP  460 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~g~~dg~v~vwd~~~~~~~~~~  460 (513)
                      ....                                ..|.+.+..+.|++.|.  +|+..-.-+.+.|.|+++. ...+.
T Consensus       243 sstr--------------------------------p~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~-~~~q~  289 (344)
T KOG4532|consen  243 SSTR--------------------------------PHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY-VNHQV  289 (344)
T ss_pred             cccC--------------------------------CCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC-ceeeE
Confidence            2111                                45777899999998763  5666656678999999987 33333


Q ss_pred             eeecC-----c-ccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          461 LYNLP-----L-VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       461 ~~~~~-----~-~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      +...+     | ...|....|+.++..+.+. ..+ .+.=|+....
T Consensus       290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~-~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  290 IVIPDDVERKHNTQHIFGTNFNNENESNDVK-NEL-QGAEYNILSR  333 (344)
T ss_pred             EecCccccccccccccccccccCCCcccccc-cch-hhheeecccc
Confidence            32221     2 2337777888887777666 333 3444555443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.19  E-value=5.7e-10  Score=95.12  Aligned_cols=268  Identities=16%  Similarity=0.254  Sum_probs=167.1

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCcc-ccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC--CEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKG-VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG--RYL  235 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l  235 (513)
                      ...|+++.|...|.||+||...|.|.+|.-..... ...++..   ++++...---.....-...|..|.|..++  ..+
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~te---FQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTE---FQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhh---hcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            56799999999999999999999999998654431 1111100   01110000000001123458888887654  356


Q ss_pred             EEEeCCCcEEEEeCCCcc-------------------e------------------e-----eec-cCcCCCeEEEEEec
Q 010296          236 ASGGLDRHIHLWDTRIQE-------------------H------------------I-----QAF-PGHRGPVSCLTFRQ  272 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~-------------------~------------------~-----~~~-~~~~~~v~~~~~~~  272 (513)
                      +..+.|.+|++|.+....                   +                  +     +.+ ..|.-.|+++.|..
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            667779999999865321                   0                  0     001 24667788999998


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCce---eEEeeccc-----CCeEEEEeeCC--CeEEEEeCCCcEEEEecCCCeee----
Q 010296          273 GTSELFSGSFDRTVKIWNAEDRAY---ISTLFGHQ-----SEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEESRL----  338 (513)
Q Consensus       273 ~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-----~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~----  338 (513)
                      +...++++ .|=.|.+|++.-...   +..+++|.     .-|++..|+|.  ..+...++.|.|++-|++.....    
T Consensus       183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence            87777766 467899999864322   22233332     34778889985  45667888999999999843211    


Q ss_pred             -E------------EecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccc
Q 010296          339 -V------------FRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNG  404 (513)
Q Consensus       339 -~------------~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  404 (513)
                       .            +......|..+.|+++|+++.+-.--+|+|||++.. .|+.++..+......+...-..+..    
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai----  337 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI----  337 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccce----
Confidence             1            122345678899999999887777889999999864 5777765433221111111000000    


Q ss_pred             cCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          405 HSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                                        -.-..+.||.+.+.+++|+..+..-+|-+.
T Consensus       338 ------------------fdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         338 ------------------FDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             ------------------eeeEEEEecCCcccccccccccceeeeccc
Confidence                              003457788888888888887777777643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.19  E-value=9.5e-09  Score=92.81  Aligned_cols=143  Identities=12%  Similarity=0.122  Sum_probs=115.2

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEeCCc-eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSASKDG-SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      .-.+|.+.|.-..+..++.-++.|..|| .+-||+..+++....                    ...-+.|.++..+|+|
T Consensus       354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~--------------------e~~lg~I~av~vs~dG  413 (668)
T COG4946         354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI--------------------EKDLGNIEAVKVSPDG  413 (668)
T ss_pred             EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe--------------------eCCccceEEEEEcCCC
Confidence            3347889999999999999999999999 899999998886542                    3456679999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC----CcEEEEeCCCCceeEEeecccCCeE
Q 010296          233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD----RTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      ++++.+.....|.+.|+.++.....-+...+-|+.+.|+|+++++|-+--+    ..|+++|+.+++...... ....=.
T Consensus       414 K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~Df  492 (668)
T COG4946         414 KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDF  492 (668)
T ss_pred             cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccccc
Confidence            999999999999999999998876666677889999999999999966544    579999999887654332 333334


Q ss_pred             EEEeeCCCe
Q 010296          309 TIDCLRKER  317 (513)
Q Consensus       309 ~~~~~~~~~  317 (513)
                      +-+|.|+++
T Consensus       493 sPaFD~d~r  501 (668)
T COG4946         493 SPAFDPDGR  501 (668)
T ss_pred             CcccCCCCc
Confidence            556667764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.17  E-value=7.3e-08  Score=102.33  Aligned_cols=260  Identities=11%  Similarity=0.082  Sum_probs=160.1

Q ss_pred             EEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe-C
Q 010296          163 TAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG-L  240 (513)
Q Consensus       163 ~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~  240 (513)
                      ..+++++. +.++++-+..+.|++||.... .+..+.....    .+...- .....+-.....|++.++++.|+++. .
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~----~G~~dG-~~~~a~f~~P~GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGE----EGLRDG-SFEDATFNRPQGLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCC----cCCCCC-chhccccCCCcEEEEeCCCCEEEEEeCC
Confidence            46788875 556667777899999998643 3322211000    000000 00112233467899999888766654 4


Q ss_pred             CCcEEEEeCCCcceeeeccCc-----------------CCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          241 DRHIHLWDTRIQEHIQAFPGH-----------------RGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       241 dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      .+.|+++|+.++.. .++.+-                 -...+.++|+| ++..+++.+.++.|++||..++... .+.+
T Consensus       645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G  722 (1057)
T PLN02919        645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG  722 (1057)
T ss_pred             CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence            57899999877653 222110                 12346799999 4555667777899999999776532 2211


Q ss_pred             c---------------cCCeEEEEeeCCCe-EE-EEeCCCcEEEEecCCCeeeEEec----------------------C
Q 010296          303 H---------------QSEVLTIDCLRKER-VL-TVGRDRSMQLWKVPEESRLVFRA----------------------P  343 (513)
Q Consensus       303 ~---------------~~~v~~~~~~~~~~-~~-~~~~d~~i~iwd~~~~~~~~~~~----------------------~  343 (513)
                      .               -.....|+++|++. ++ +-..++.|++||+.++......+                      .
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~  802 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL  802 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence            1               12346789999874 55 44567999999998654322110                      0


Q ss_pred             CCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296          344 ASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY  422 (513)
Q Consensus       344 ~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  422 (513)
                      ......+++.++|. +++-..++.|++||..++............      +.            .+..      .....
T Consensus       803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G------~~------------dG~~------~~a~l  858 (1057)
T PLN02919        803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG------FK------------DGKA------LKAQL  858 (1057)
T ss_pred             ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC------CC------------CCcc------ccccc
Confidence            11345788889886 567778999999999887655433211100      00            0000      01112


Q ss_pred             ceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          423 SWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       423 ~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .....|+++++|+++++-+.++.|++||+.++
T Consensus       859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            23788999999999999999999999999886

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.17  E-value=1.2e-08  Score=85.44  Aligned_cols=243  Identities=9%  Similarity=0.018  Sum_probs=158.9

Q ss_pred             EEEEECC-----CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CCEEE
Q 010296          163 TAVALSE-----DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GRYLA  236 (513)
Q Consensus       163 ~~~~~s~-----~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~  236 (513)
                      +.|.|-|     ...+||.||.-|.+.+|...+.+....+                  ...|...|+-+.=..+ .-.+.
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~------------------cd~snn~v~~~~r~cd~~~~~~  132 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQ------------------CDVSNNDVTLVKRYCDLKFPLN  132 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceee------------------ecccccchhhhhhhccccccee
Confidence            4456666     3468999999999999999876644332                  1122222221111111 22466


Q ss_pred             EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc-ee-E-EeecccCCeEEEEee
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA-YI-S-TLFGHQSEVLTIDCL  313 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~-~-~~~~~~~~v~~~~~~  313 (513)
                      .++.|.++++.++..+.....+.-..-.+.+++++++++++++.+....|..|.+.... .+ . ........-.+..|+
T Consensus       133 i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s  212 (344)
T KOG4532|consen  133 IASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS  212 (344)
T ss_pred             eccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec
Confidence            67778888888876443322221111238899999999999999999999999987532 22 2 233445556788888


Q ss_pred             CCC-eEEEEeCCCcEEEEecCCCeee------EEecCCCCeeEEEeecCCe---EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          314 RKE-RVLTVGRDRSMQLWKVPEESRL------VFRAPASSLECCCFISNDE---FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       314 ~~~-~~~~~~~d~~i~iwd~~~~~~~------~~~~~~~~v~~~~~~~~~~---~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      ... .|+++..||++.|||++.....      ....|.+.+..+.|++.|.   |+..-.-+.+.+.|+++++....+..
T Consensus       213 ~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i  292 (344)
T KOG4532|consen  213 ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI  292 (344)
T ss_pred             cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence            754 7779999999999999875433      3345778899999998774   44555678899999999987776653


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc-ceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY-SWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .....                              ..|. ..|....|+.++.-+.+.+.+ .+.=|++.+.
T Consensus       293 ~~d~~------------------------------~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  293 PDDVE------------------------------RKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR  333 (344)
T ss_pred             Ccccc------------------------------ccccccccccccccCCCcccccccch-hhheeecccc
Confidence            32210                              1111 227777788777766666655 4566666554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.15  E-value=3.3e-08  Score=84.17  Aligned_cols=218  Identities=15%  Similarity=0.189  Sum_probs=131.7

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCc--ceeee---ccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296          226 LAVSSDGRYLASGGLDRHIHLWDTRIQ--EHIQA---FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       226 ~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      ++.+.+|++||+.- |..|.|-..+..  .++..   -+.....=.-++|+||+..||.+...|+|+++|+... .+..+
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI   80 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence            56778898888765 667777655432  11111   1222234567999999999999999999999999653 33333


Q ss_pred             ec-------ccCCeEEEEeeCC-------CeEEEEeCCCcEEEEecCCCe--e----eE--Ee-cCCCCeeEEEeecCCe
Q 010296          301 FG-------HQSEVLTIDCLRK-------ERVLTVGRDRSMQLWKVPEES--R----LV--FR-APASSLECCCFISNDE  357 (513)
Q Consensus       301 ~~-------~~~~v~~~~~~~~-------~~~~~~~~d~~i~iwd~~~~~--~----~~--~~-~~~~~v~~~~~~~~~~  357 (513)
                      ..       ....|..+.|.+-       ..|++....|.++-|-+..+.  .    ..  +. .....|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            22       1235666666542       257788889888888764321  1    11  22 2356899999999875


Q ss_pred             -EEEE-eCCC----------CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCc-CCCCCcce
Q 010296          358 -FLSG-SDDG----------SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSY-HSSSAYSW  424 (513)
Q Consensus       358 -~~~~-~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~  424 (513)
                       |++| +...          -+..|.+-++.|-..............  ....+..   .    ......+ ........
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~--~~~~~~~---~----~~~~~~fs~~~~~~d~  231 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITAS--SKRRGLL---R----IPSFKFFSRQGQEQDG  231 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccc--cccccee---e----ccceeeeeccccCCCc
Confidence             3343 3322          366777777666555432211110000  0000000   0    0000000 00223456


Q ss_pred             EEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          425 VSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       425 i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      |..|..||+|.+||+...+|.|.+|++.+-
T Consensus       232 i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  232 IFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             eEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            999999999999999999999999999876

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=6.8e-08  Score=92.27  Aligned_cols=210  Identities=12%  Similarity=0.050  Sum_probs=126.4

Q ss_pred             CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeC---CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe
Q 010296          242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSF---DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER  317 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  317 (513)
                      ..|.+-|..... .+.+... +.+....|+|+|+. ++..+.   ...|+++|+.+++..... ...+......|+|+|.
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence            355555554333 2323323 37788999999985 554333   356999999888654433 3555566788999984


Q ss_pred             -EE-EEeC--CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCC--CEEEEecCCCCeeEEeecCCCccc
Q 010296          318 -VL-TVGR--DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDG--SIELWSLLRKKPVYIVKNAHPLLD  389 (513)
Q Consensus       318 -~~-~~~~--d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~  389 (513)
                       ++ +.+.  +..|+++++.++....+...........|+|+|. ++ +....+  .|.++++.+++.......      
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~------  319 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH------  319 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC------
Confidence             44 3333  3568888887776554444333334567999995 44 333333  577777777655332210      


Q ss_pred             CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---------CcEEEEEeCCCCcceee
Q 010296          390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---------GSVRLWAIESETKDIQP  460 (513)
Q Consensus       390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---------g~v~vwd~~~~~~~~~~  460 (513)
                                                    .    .....|||+|++|+..+..         ..|.+.++.++.  .+.
T Consensus       320 ------------------------------g----~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~  363 (419)
T PRK04043        320 ------------------------------G----KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRR  363 (419)
T ss_pred             ------------------------------C----CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEE
Confidence                                          0    0123799999988766543         367888887762  333


Q ss_pred             eeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          461 LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       461 ~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      +...   +......|+|||++|+......+.-.+|-+.-
T Consensus       364 LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        364 LTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             CCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence            3321   22335789999999887755555544554433

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.08  E-value=2.2e-07  Score=81.83  Aligned_cols=205  Identities=17%  Similarity=0.167  Sum_probs=143.8

Q ss_pred             CeEEEEECC-CCCeEEEEeCCce-EEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          161 SVTAVALSE-DDSKGFSASKDGS-ILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       161 ~V~~~~~s~-~~~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ....++.+| ....++.+-.-|+ ..+||..++.....+++.           +...+.+|      -.||++|++|++.
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-----------~gRHFyGH------g~fs~dG~~LytT   68 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-----------PGRHFYGH------GVFSPDGRLLYTT   68 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-----------CCCEEecC------EEEcCCCCEEEEe
Confidence            345678888 4555667766665 778999999988766332           22234555      5899999999986


Q ss_pred             e-----CCCcEEEEeCC-CcceeeeccCcCCCeEEEEEecCCCeEEEEe------------------CCCcEEEEeCCCC
Q 010296          239 G-----LDRHIHLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSELFSGS------------------FDRTVKIWNAEDR  294 (513)
Q Consensus       239 ~-----~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~  294 (513)
                      -     ..|.|-|||.. +.+.+..+..|.-.-..+.+.|+++.|+++.                  .+-++...|..++
T Consensus        69 End~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG  148 (305)
T PF07433_consen   69 ENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG  148 (305)
T ss_pred             ccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence            3     35899999998 6677888888877778899999998877653                  2345666777888


Q ss_pred             ceeEE--e--ecccCCeEEEEeeCCCeEEEEeCC-C-------cEEEEecCCCeeeEE-------ecCCCCeeEEEeecC
Q 010296          295 AYIST--L--FGHQSEVLTIDCLRKERVLTVGRD-R-------SMQLWKVPEESRLVF-------RAPASSLECCCFISN  355 (513)
Q Consensus       295 ~~~~~--~--~~~~~~v~~~~~~~~~~~~~~~~d-~-------~i~iwd~~~~~~~~~-------~~~~~~v~~~~~~~~  355 (513)
                      +.+.+  +  ..|...|..+++.++|.++.+... +       -|.++..... ...+       ......+-+++++++
T Consensus       149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~  227 (305)
T PF07433_consen  149 ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRD  227 (305)
T ss_pred             ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCC
Confidence            87766  3  237778999999999988776531 1       1333332221 1111       223467889999999


Q ss_pred             Ce-E-EEEeCCCCEEEEecCCCCeeEEeec
Q 010296          356 DE-F-LSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       356 ~~-~-~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      +. + +++=..+.+.+||..+++.+.....
T Consensus       228 g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l  257 (305)
T PF07433_consen  228 GRLIAVTSPRGGRVAVWDAATGRLLGSVPL  257 (305)
T ss_pred             CCEEEEECCCCCEEEEEECCCCCEeecccc
Confidence            85 4 3555678999999999998876653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.07  E-value=1.1e-10  Score=112.65  Aligned_cols=201  Identities=15%  Similarity=0.159  Sum_probs=144.7

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ...+++..|+..-+|++|+-+.++|+.|+..|.|++|++.+|.....                   ...|..+|+.+.-+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs 1152 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPS 1152 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc-------------------cccccccccccccc
Confidence            45667888999999999999999999999999999999999987663                   47899999999999


Q ss_pred             CCCCEEEEEeCC--CcEEEEeCCC-cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe-ec---
Q 010296          230 SDGRYLASGGLD--RHIHLWDTRI-QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-FG---  302 (513)
Q Consensus       230 ~~~~~l~s~~~d--g~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~---  302 (513)
                      .+|..+++.+..  .-..+|++.+ +...++|.    .-.++.|+.....-+.|+....+.+||+.++..+.++ .+   
T Consensus      1153 ~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~ 1228 (1516)
T KOG1832|consen 1153 VDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT 1228 (1516)
T ss_pred             CCcceeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchh
Confidence            999987776543  3577999764 34445554    3457888876555555555567899999998876653 21   


Q ss_pred             ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEe
Q 010296          303 HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       303 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                      ....-++..|+|...++.-  ||  .+||++....+...........-.|+|.|. ++..+     .|||+++.+.++..
T Consensus      1229 ~~y~~n~a~FsP~D~LIln--dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1229 SSYSNNLAHFSPCDTLILN--DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred             hhhhccccccCCCcceEee--Cc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcC
Confidence            2223367789998777643  23  579998776553222222222335888886 55544     58999998877765


Q ss_pred             e
Q 010296          382 K  382 (513)
Q Consensus       382 ~  382 (513)
                      .
T Consensus      1300 P 1300 (1516)
T KOG1832|consen 1300 P 1300 (1516)
T ss_pred             c
Confidence            4

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.06  E-value=3.6e-07  Score=76.59  Aligned_cols=189  Identities=12%  Similarity=0.087  Sum_probs=119.1

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR  250 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~  250 (513)
                      ..+++.|+..+.+.--|..+|......                    --...|-+-+.- -|.+++.|+..|.+++.+.+
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~--------------------ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~   81 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--------------------ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVK   81 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeeh--------------------hhCceeeeeeEE-ECCEEEEEEccCcEEEEEec
Confidence            467778899999999999988876532                    011223332222 47789999999999999999


Q ss_pred             CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-CCeEEEEeCCCcEEE
Q 010296          251 IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-KERVLTVGRDRSMQL  329 (513)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~i~i  329 (513)
                      +|..+..+.....-=......+++..+..++.|++.+..|.++..++...+...+...+-+..+ ++.++++...|.+.-
T Consensus        82 tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vla  161 (354)
T KOG4649|consen   82 TGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLA  161 (354)
T ss_pred             chhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEE
Confidence            9987777664332222345577889999999999999999999999988764444444444555 567776666666655


Q ss_pred             EecCCCeeeEEecC--CCCe----eEEEe-----ecCCeEEEEeCCCCEEEEecCCCCeeEEe
Q 010296          330 WKVPEESRLVFRAP--ASSL----ECCCF-----ISNDEFLSGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       330 wd~~~~~~~~~~~~--~~~v----~~~~~-----~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                      -.........+..+  ..++    .++.-     .-+|.+.+-+..| -.||..+++.++..-
T Consensus       162 vt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG-~qvwr~~t~GpIf~~  223 (354)
T KOG4649|consen  162 VTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESG-RQVWRPATKGPIFME  223 (354)
T ss_pred             EccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCC-cEEEeecCCCceecc
Confidence            55444322211111  1111    11110     1234455555555 457777777665543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.06  E-value=6.1e-07  Score=80.13  Aligned_cols=217  Identities=12%  Similarity=0.078  Sum_probs=141.5

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEe-cCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          225 ALAVSS-DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       225 ~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      ++.|.+ ++.++++-...+.|+.|+..++.... +....  ...+++. ++ ..|+.+... .+.++|+.+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeec
Confidence            578888 67777777778999999998876543 22122  7778888 55 455555554 456669988865443332


Q ss_pred             -----ccCCeEEEEeeCCCeEEEEeCC---------CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-E-EEEeCCCC
Q 010296          303 -----HQSEVLTIDCLRKERVLTVGRD---------RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-F-LSGSDDGS  366 (513)
Q Consensus       303 -----~~~~v~~~~~~~~~~~~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~dg~  366 (513)
                           .....+.+++.++|.++++...         +.|..++.. ++.............++|+|++. | ++-+..+.
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence                 2346788999999987765432         557777777 45444444456678999999995 3 46677888


Q ss_pred             EEEEecCCCCe-eE---EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC
Q 010296          367 IELWSLLRKKP-VY---IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG  442 (513)
Q Consensus       367 i~iwd~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  442 (513)
                      |..|++..... +.   .+...                                  ....+..-.+++..+|++.++...
T Consensus       158 i~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~g~pDG~~vD~~G~l~va~~~  203 (246)
T PF08450_consen  158 IWRFDLDADGGELSNRRVFIDF----------------------------------PGGPGYPDGLAVDSDGNLWVADWG  203 (246)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE-----------------------------------SSSSCEEEEEEEBTTS-EEEEEET
T ss_pred             eEEEeccccccceeeeeeEEEc----------------------------------CCCCcCCCcceEcCCCCEEEEEcC
Confidence            99998864322 11   11100                                  111133778999999998888778


Q ss_pred             CCcEEEEEeCCCCcceeeeeecCcccEEEEEEee-cCCCEEEEE
Q 010296          443 NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFA-KSGQFLIAG  485 (513)
Q Consensus       443 dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~~  485 (513)
                      .+.|.+++.. + +.+..+. .+ ...+++++|. |+...|+++
T Consensus       204 ~~~I~~~~p~-G-~~~~~i~-~p-~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  204 GGRIVVFDPD-G-KLLREIE-LP-VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             TTEEEEEETT-S-CEEEEEE--S-SSSEEEEEEESTTSSEEEEE
T ss_pred             CCEEEEECCC-c-cEEEEEc-CC-CCCEEEEEEECCCCCEEEEE
Confidence            8899999977 4 3344333 33 3478999995 777777766

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.04  E-value=2.8e-09  Score=94.31  Aligned_cols=164  Identities=13%  Similarity=0.135  Sum_probs=110.3

Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL  240 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  240 (513)
                      .+..+..+|.+++||++..+....++++........++      ...       ....-...+..+..+.........+.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~------~~~-------~v~~~~~ai~~~~~~~sv~v~dkagD  130 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL------DVS-------CVPKRPTAISFIREDTSVLVADKAGD  130 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceee------eEe-------ecccCcceeeeeeccceEEEEeecCC
Confidence            34555667778888877777776666665443211110      000       01111223444443333323333444


Q ss_pred             CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe-ecccCCeEEEEeeCCCeEE
Q 010296          241 DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-FGHQSEVLTIDCLRKERVL  319 (513)
Q Consensus       241 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~  319 (513)
                      ...+.+|....+.+ ..+-+|-..++.++|+||+++|+++..|..|+|-....-..+..+ .||..-|..++..++..|+
T Consensus       131 ~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~Ll  209 (390)
T KOG3914|consen  131 VYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLL  209 (390)
T ss_pred             ceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceee
Confidence            55666776665443 344579999999999999999999999999999887665555544 5799999999998888889


Q ss_pred             EEeCCCcEEEEecCCCeee
Q 010296          320 TVGRDRSMQLWKVPEESRL  338 (513)
Q Consensus       320 ~~~~d~~i~iwd~~~~~~~  338 (513)
                      +++.|++|++||+.+++.+
T Consensus       210 S~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  210 SGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             ecCCCCcEEEEecccCCcc
Confidence            9999999999999988766

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=6.2e-08  Score=92.90  Aligned_cols=283  Identities=12%  Similarity=0.007  Sum_probs=186.5

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC------
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD------  231 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------  231 (513)
                      |...-.++.|+|.| +||-|+. ..|.|-|..+-+.+..+                   ..|...|+.+.|.|-      
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsi-------------------e~h~s~V~~VrWap~~~p~~l   72 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSI-------------------ELHQSAVTSVRWAPAPSPRDL   72 (1062)
T ss_pred             CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhcc-------------------ccCccceeEEEeccCCCchhc
Confidence            34447788999987 4555553 57888898887777654                   678899999999872      


Q ss_pred             ------CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec---CC-CeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296          232 ------GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ---GT-SELFSGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       232 ------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                            .-+||++...|.|.+||...+..+..+..|..++..++|-+   +. ..|++-....+|.+|+..+|+.+....
T Consensus        73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~  152 (1062)
T KOG1912|consen   73 LSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD  152 (1062)
T ss_pred             cCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence                  12577788889999999999999999999999999999976   33 456677777899999999999988876


Q ss_pred             cccCCeEEEEeeC-CC-eEEEEeCCCcEEEEecCCC-------eeeEEe-cCCC-------------------------C
Q 010296          302 GHQSEVLTIDCLR-KE-RVLTVGRDRSMQLWKVPEE-------SRLVFR-APAS-------------------------S  346 (513)
Q Consensus       302 ~~~~~v~~~~~~~-~~-~~~~~~~d~~i~iwd~~~~-------~~~~~~-~~~~-------------------------~  346 (513)
                      .......|+.+.| +. .+...+..|.+.+.+.-..       +...+. .|..                         .
T Consensus       153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity  232 (1062)
T KOG1912|consen  153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY  232 (1062)
T ss_pred             cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence            6666677788887 33 4556666777766654221       111111 1100                         0


Q ss_pred             eeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296          347 LECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV  425 (513)
Q Consensus       347 v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  425 (513)
                      ...++|+|.-+ ++.......+.|+|+.-..++..+......                                     +
T Consensus       233 ~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~-------------------------------------a  275 (1062)
T KOG1912|consen  233 CAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGG-------------------------------------A  275 (1062)
T ss_pred             HHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCC-------------------------------------c
Confidence            11235566543 555556778999999988888877643321                                     3


Q ss_pred             EEEEEecC--CCEEEEecCCCcEEEEEeCCCCcceee---------------eeecCcccEEEEEEeecCCCEEEEEecC
Q 010296          426 SSVTVCGG--SDLAASGAGNGSVRLWAIESETKDIQP---------------LYNLPLVGFVNSLAFAKSGQFLIAGVGQ  488 (513)
Q Consensus       426 ~~~~~s~~--~~~l~~g~~dg~v~vwd~~~~~~~~~~---------------~~~~~~~~~v~~v~~sp~~~~l~~~~~~  488 (513)
                      .-+.+-|+  ...|++.-.||.+.||-.+........               +.... .-.+...+..|..+-.++-.=.
T Consensus       276 kfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~-~~rp~~~~~cPs~~sa~avl~s  354 (1062)
T KOG1912|consen  276 KFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME-EFRPVIGASCPSTPSALAVLYS  354 (1062)
T ss_pred             ceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech-hcccceeecCCCChhhhhhhhh
Confidence            34455554  468999999999999987653211111               11000 1112233344554433333356


Q ss_pred             CCcccccccCC
Q 010296          489 EPRLGRWGHLP  499 (513)
Q Consensus       489 dg~v~~W~~~~  499 (513)
                      +|.+.+|.+..
T Consensus       355 ~g~~~~w~l~~  365 (1062)
T KOG1912|consen  355 SGDSTFWQLSN  365 (1062)
T ss_pred             cchhHHHhhhc
Confidence            78899998874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.03  E-value=5.8e-07  Score=79.27  Aligned_cols=227  Identities=12%  Similarity=0.098  Sum_probs=140.9

Q ss_pred             EEEEEEcC-CCCEEEEEeCCC-cEEEEeCCCcceeeeccCcCCCe--EEEEEecCCCeEEEEeC-----CCcEEEEeCC-
Q 010296          223 ILALAVSS-DGRYLASGGLDR-HIHLWDTRIQEHIQAFPGHRGPV--SCLTFRQGTSELFSGSF-----DRTVKIWNAE-  292 (513)
Q Consensus       223 v~~~~~s~-~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iwd~~-  292 (513)
                      ...++.+| ....++.+-.-| ...+||..+++....+....+.-  -.-+|+++|++|++.-.     .|.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            45688899 455566665554 47789999999887765433322  24689999999998643     5889999998 


Q ss_pred             CCceeEEeecccCCeEEEEeeCCC-eEEEEe------------------CCCcEEEEecCCCeeeE---E--ecCCCCee
Q 010296          293 DRAYISTLFGHQSEVLTIDCLRKE-RVLTVG------------------RDRSMQLWKVPEESRLV---F--RAPASSLE  348 (513)
Q Consensus       293 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~------------------~d~~i~iwd~~~~~~~~---~--~~~~~~v~  348 (513)
                      +.+.+..+..+.-....+.+.|++ .|+++.                  ++.++.+.|..++..+.   +  ..+..++.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            667777887777777788889988 444432                  12334555556665542   2  23556788


Q ss_pred             EEEeecCCeEEEEeCC-CC-----EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296          349 CCCFISNDEFLSGSDD-GS-----IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY  422 (513)
Q Consensus       349 ~~~~~~~~~~~~~~~d-g~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  422 (513)
                      .+++.++|.++.+... |.     -.+.-.+.+..+..+......                              .....
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~------------------------------~~~l~  216 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQ------------------------------WRRLN  216 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHH------------------------------HHhhC
Confidence            8888888876655432 11     011111111111111110000                              02334


Q ss_pred             ceEEEEEEecCCCEEEEec-CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE
Q 010296          423 SWVSSVTVCGGSDLAASGA-GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       423 ~~i~~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~  485 (513)
                      .++-+|++++++.++++.+ .-|.+.+||..++    ..+... ....+..|+-.+++ +++++
T Consensus       217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg----~~~~~~-~l~D~cGva~~~~~-f~~ss  274 (305)
T PF07433_consen  217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG----RLLGSV-PLPDACGVAPTDDG-FLVSS  274 (305)
T ss_pred             CceEEEEEeCCCCEEEEECCCCCEEEEEECCCC----CEeecc-ccCceeeeeecCCc-eEEeC
Confidence            5699999999998776555 6789999999988    222221 23346677777776 55555

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.02  E-value=1.1e-06  Score=78.41  Aligned_cols=194  Identities=11%  Similarity=0.017  Sum_probs=127.1

Q ss_pred             EEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc-CCCCEEEEEeCC
Q 010296          164 AVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS-SDGRYLASGGLD  241 (513)
Q Consensus       164 ~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~d  241 (513)
                      ++.|.+ ++.++++--..+.|..|+..++......                      ......+++. +++. |+.+...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~----------------------~~~~~G~~~~~~~g~-l~v~~~~   60 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID----------------------LPGPNGMAFDRPDGR-LYVADSG   60 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE----------------------SSSEEEEEEECTTSE-EEEEETT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe----------------------cCCCceEEEEccCCE-EEEEEcC
Confidence            568888 6777777778899999999887654311                      1116677777 6654 5555544


Q ss_pred             CcEEEEeCCCcceeeeccC-----cCCCeEEEEEecCCCeEEEEeCC--------CcEEEEeCCCCceeEEeecccCCeE
Q 010296          242 RHIHLWDTRIQEHIQAFPG-----HRGPVSCLTFRQGTSELFSGSFD--------RTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                       .+.++|+.+++....+..     .....+.+++.|+|++.++....        |.|..++.. ++... +...-...+
T Consensus        61 -~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pN  137 (246)
T PF08450_consen   61 -GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPN  137 (246)
T ss_dssp             -CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEE
T ss_pred             -ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCccccc
Confidence             456669988865433332     34567899999999977765543        557778876 44333 333456678


Q ss_pred             EEEeeCCCe-EE-EEeCCCcEEEEecCCCee-----eEE-ecCC--CCeeEEEeecCCeEE-EEeCCCCEEEEecCCCCe
Q 010296          309 TIDCLRKER-VL-TVGRDRSMQLWKVPEESR-----LVF-RAPA--SSLECCCFISNDEFL-SGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       309 ~~~~~~~~~-~~-~~~~d~~i~iwd~~~~~~-----~~~-~~~~--~~v~~~~~~~~~~~~-~~~~dg~i~iwd~~~~~~  377 (513)
                      .|+|+|++. |+ +-+..+.|..|++.....     ..+ ....  .....+++..+|.|. +....+.|.+++.. ++.
T Consensus       138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~  216 (246)
T PF08450_consen  138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL  216 (246)
T ss_dssp             EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE
T ss_pred             ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE
Confidence            999999985 44 455678899999863222     112 2222  237789999999855 55578999999977 888


Q ss_pred             eEEeecC
Q 010296          378 VYIVKNA  384 (513)
Q Consensus       378 ~~~~~~~  384 (513)
                      +..+...
T Consensus       217 ~~~i~~p  223 (246)
T PF08450_consen  217 LREIELP  223 (246)
T ss_dssp             EEEEE-S
T ss_pred             EEEEcCC
Confidence            8887654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.02  E-value=2.2e-07  Score=82.72  Aligned_cols=215  Identities=13%  Similarity=0.111  Sum_probs=136.3

Q ss_pred             CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc
Q 010296          180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP  259 (513)
Q Consensus       180 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  259 (513)
                      +|+|..||..+++.+....                 +..-.....+.. .+++.++++++.++.|+.||..+|+.+..+.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~-----------------~~~~~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~   63 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYD-----------------LGPGIGGPVATA-VPDGGRVYVASGDGNLYALDAKTGKVLWRFD   63 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEE-----------------CSSSCSSEEETE-EEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEE-----------------CCCCCCCccceE-EEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence            6889999999888876541                 000011222222 2246677788899999999999999887666


Q ss_pred             CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe-ecccC-----CeEEEEeeCCCeEEEEeCCCcEEEEecC
Q 010296          260 GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-FGHQS-----EVLTIDCLRKERVLTVGRDRSMQLWKVP  333 (513)
Q Consensus       260 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~-----~v~~~~~~~~~~~~~~~~d~~i~iwd~~  333 (513)
                      . ...+.... ...+..+++++.++.|+.+|..+++.+... .....     ......+. ++.++++..++.|..+|+.
T Consensus        64 ~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~  140 (238)
T PF13360_consen   64 L-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPK  140 (238)
T ss_dssp             C-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETT
T ss_pred             c-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecC
Confidence            4 22221112 224556777778889999999999998874 32211     11122222 5677788889999999999


Q ss_pred             CCeeeEEe-cCCCC----------eeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccc
Q 010296          334 EESRLVFR-APASS----------LECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKIS  402 (513)
Q Consensus       334 ~~~~~~~~-~~~~~----------v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  402 (513)
                      +++.+... .....          +..-.+..++.++.++.++.+..+|+.+++.+.... ...                
T Consensus       141 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~----------------  203 (238)
T PF13360_consen  141 TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP-ISG----------------  203 (238)
T ss_dssp             TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC-SS-----------------
T ss_pred             CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec-CCC----------------
Confidence            99886322 22211          122233345577777778864444999998664222 111                


Q ss_pred             cccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC
Q 010296          403 NGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET  455 (513)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~  455 (513)
                                            +..+ ..+.+..|++++.++.|..||+.++.
T Consensus       204 ----------------------~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  204 ----------------------IYSL-PSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             ----------------------ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             ----------------------ccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence                                  2221 34567788888899999999999983

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=4.9e-07  Score=86.49  Aligned_cols=152  Identities=7%  Similarity=0.018  Sum_probs=96.2

Q ss_pred             cEEEEEEcCCCCE-EEEEeC---CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEE-EeC--CCcEEEEeCCCC
Q 010296          222 HILALAVSSDGRY-LASGGL---DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFS-GSF--DRTVKIWNAEDR  294 (513)
Q Consensus       222 ~v~~~~~s~~~~~-l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~--dg~i~iwd~~~~  294 (513)
                      .+..-.|+|+|+. ++..+.   ...|+++|+.+++...... ..+......|+|||+.|+. .+.  +..|+++++.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778999999985 554443   3569999998887654433 4555667889999987764 333  356888898877


Q ss_pred             ceeEEeecccCCeEEEEeeCCCe-EEEEe-CCC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CC----
Q 010296          295 AYISTLFGHQSEVLTIDCLRKER-VLTVG-RDR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DD----  364 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d----  364 (513)
                      .. ..+..+........|+|+|+ ++..+ ..+  .|+++++.++...........  ...|+|+|. ++..+ ..    
T Consensus       268 ~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~  344 (419)
T PRK04043        268 TL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF  344 (419)
T ss_pred             cE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence            64 34443443344567999984 44333 223  688888877665432222111  248999996 44332 22    


Q ss_pred             ----CCEEEEecCCCCe
Q 010296          365 ----GSIELWSLLRKKP  377 (513)
Q Consensus       365 ----g~i~iwd~~~~~~  377 (513)
                          ..|.+.++.++..
T Consensus       345 ~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        345 GKNTFNLYLISTNSDYI  361 (419)
T ss_pred             CCCCcEEEEEECCCCCe
Confidence                3577777776653

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.98  E-value=6.7e-09  Score=91.99  Aligned_cols=159  Identities=16%  Similarity=0.249  Sum_probs=112.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce----eeeccCcCCCeEEEEEecCCCeEEE---EeCCCcEEEEeCCCCc
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCLTFRQGTSELFS---GSFDRTVKIWNAEDRA  295 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~  295 (513)
                      +..+..++.+++||++..+....++++.....    +..+. -...-+++.|..+......   ++....+.+|....+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            45566788888999888887776776554332    22222 1222344455444444443   3445556666665543


Q ss_pred             eeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEec
Q 010296          296 YISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDEFLSGSDDGSIELWSL  372 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~  372 (513)
                       ...+.+|-..++.++++||++++ ++..|..|++-.......+  ...+|..-|..++..++..|++++.|++|++||+
T Consensus       144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence             33456799999999999988655 8889999999887665544  4567889999999999988999999999999999


Q ss_pred             CCCCeeEEeec
Q 010296          373 LRKKPVYIVKN  383 (513)
Q Consensus       373 ~~~~~~~~~~~  383 (513)
                      .+++.+.++..
T Consensus       223 ~sgk~L~t~dl  233 (390)
T KOG3914|consen  223 TSGKLLDTCDL  233 (390)
T ss_pred             ccCCcccccch
Confidence            99998876653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.96  E-value=1.6e-08  Score=84.29  Aligned_cols=205  Identities=14%  Similarity=0.163  Sum_probs=119.8

Q ss_pred             eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC
Q 010296          162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD  241 (513)
Q Consensus       162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  241 (513)
                      |+.+.|+.+ -.|+++..++.+..+....+.+....       .......+...+..|..+-.+-+.+--++.++++..|
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~-------~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~d  110 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLW-------ERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYAD  110 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechh-------hcccCcCceeeeeccCCCCCcccccccCCceEecCCC
Confidence            666666654 34677777777766655444333211       0000011111122233332233333446779999999


Q ss_pred             CcEEEEeCCCcce-eeeccCcCCCeEEEEEecCCCeEEEEe-----CCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296          242 RHIHLWDTRIQEH-IQAFPGHRGPVSCLTFRQGTSELFSGS-----FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       242 g~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  315 (513)
                      |.+.+.+.+.... ...+......-.+.++...++.+.++.     .-+..++|+++..+.+..-......|.+++-+|.
T Consensus       111 g~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~  190 (319)
T KOG4714|consen  111 GSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPA  190 (319)
T ss_pred             ceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcc
Confidence            9999998764211 111111111122233334445454432     2245666776544332222223334888888884


Q ss_pred             C--eEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCC
Q 010296          316 E--RVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLR  374 (513)
Q Consensus       316 ~--~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~  374 (513)
                      .  .+++|+.+|.+.+||.+.....  .+..|...+..+.|+|..  +|++++.||.+-.||..+
T Consensus       191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3  4557788999999999887544  567888999999999976  599999999999999765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.96  E-value=6.6e-07  Score=85.95  Aligned_cols=256  Identities=8%  Similarity=-0.003  Sum_probs=154.1

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE-EEEcCCCCEEEEEeCCCcEEEEeC
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGRYLASGGLDRHIHLWDT  249 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~i~vwd~  249 (513)
                      +..++.++.+|.+..+|..+++.+.....                    ...+.+ ...  .+..++.++.++.|..+|.
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~--------------------~~~~~ssP~v--~~~~v~v~~~~g~l~ald~  177 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV--------------------AGEALSRPVV--SDGLVLVHTSNGMLQALNE  177 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccC--------------------CCceecCCEE--ECCEEEEECCCCEEEEEEc
Confidence            45677788899999999999998764410                    011111 111  2446677778899999999


Q ss_pred             CCcceeeeccCcCCCe-----EEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC-------CeEEEEeeC---
Q 010296          250 RIQEHIQAFPGHRGPV-----SCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS-------EVLTIDCLR---  314 (513)
Q Consensus       250 ~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~---  314 (513)
                      .+|+.+..+......+     .+-..  .+..++.++.+|.+..+|..+++.+........       ....+..+|   
T Consensus       178 ~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~  255 (394)
T PRK11138        178 SDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV  255 (394)
T ss_pred             cCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence            9999887665321110     01111  123577778899999999999887655431110       011111222   


Q ss_pred             CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296          315 KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF  394 (513)
Q Consensus       315 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
                      ++.+++++.++.+..+|+.+++.+....... ...+. ..++.++.++.+|.+..+|..+++.+........        
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~-~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--------  325 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS-VNDFA-VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH--------  325 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCC-ccCcE-EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC--------
Confidence            6778888889999999999887663332211 11222 2356788888999999999999987554321100        


Q ss_pred             ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEE-EE
Q 010296          395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVN-SL  473 (513)
Q Consensus       395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~-~v  473 (513)
                                              .    ...+..+  .+.+|+.++.+|.|+++|..++.. +.... .. ...+. ..
T Consensus       326 ------------------------~----~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~-~~~~~-~~-~~~~~s~P  372 (394)
T PRK11138        326 ------------------------R----LLTAPVL--YNGYLVVGDSEGYLHWINREDGRF-VAQQK-VD-SSGFLSEP  372 (394)
T ss_pred             ------------------------C----cccCCEE--ECCEEEEEeCCCEEEEEECCCCCE-EEEEE-cC-CCcceeCC
Confidence                                    0    0111122  145788889999999999988832 22221 11 12222 12


Q ss_pred             EeecCCCEEEEEecCCCcccccc
Q 010296          474 AFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       474 ~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      .+  .+..|+++ +.+|.|..++
T Consensus       373 ~~--~~~~l~v~-t~~G~l~~~~  392 (394)
T PRK11138        373 VV--ADDKLLIQ-ARDGTVYAIT  392 (394)
T ss_pred             EE--ECCEEEEE-eCCceEEEEe
Confidence            22  24467777 7899887664

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.94  E-value=5.1e-07  Score=86.69  Aligned_cols=272  Identities=13%  Similarity=0.041  Sum_probs=155.3

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC-cccE-EEEEEcCCCCEEEEEeCCCcEEEE
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ-SKHI-LALAVSSDGRYLASGGLDRHIHLW  247 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v-~~~~~s~~~~~l~s~~~dg~i~vw  247 (513)
                      .+..+++++.+|.|.-+|..+++.+.........          ...... ...+ ..+..  .+..++.++.+|.++.+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~----------~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~al  135 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD----------GWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYAL  135 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc----------cccccccccccccccEE--ECCEEEEEcCCCEEEEE
Confidence            3567888888899999999999877543111100          000000 0000 01111  35567778889999999


Q ss_pred             eCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE-EEEeeC---CCeEEEEeC
Q 010296          248 DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL-TIDCLR---KERVLTVGR  323 (513)
Q Consensus       248 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~---~~~~~~~~~  323 (513)
                      |..+|+.+-..........+....  +..++.++.++.|..+|..+|+.+..+......+. ....+|   ++.++.++.
T Consensus       136 d~~tG~~~W~~~~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~  213 (394)
T PRK11138        136 NAEDGEVAWQTKVAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD  213 (394)
T ss_pred             ECCCCCCcccccCCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC
Confidence            999999887765432211111222  34677788899999999999998877653211110 000111   456777888


Q ss_pred             CCcEEEEecCCCeeeEEecCCCC--------eeEEEe---ecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296          324 DRSMQLWKVPEESRLVFRAPASS--------LECCCF---ISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK  392 (513)
Q Consensus       324 d~~i~iwd~~~~~~~~~~~~~~~--------v~~~~~---~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  392 (513)
                      ++.+..++..+++.........+        ...+..   ..++.+++++.+|.+..+|..+++.+.......       
T Consensus       214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-------  286 (394)
T PRK11138        214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-------  286 (394)
T ss_pred             CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-------
Confidence            89999999888765522111000        000111   125677778889999999999998776543110       


Q ss_pred             CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEE
Q 010296          393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNS  472 (513)
Q Consensus       393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~  472 (513)
                                                      ...+..  .+..|+.++.+|.|..+|..++......-. .. .....+
T Consensus       287 --------------------------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~~-~~~~~s  330 (394)
T PRK11138        287 --------------------------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSD-LL-HRLLTA  330 (394)
T ss_pred             --------------------------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccc-cC-CCcccC
Confidence                                            111112  345777788889999999988733222110 00 011111


Q ss_pred             EEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          473 LAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       473 v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ..+  .+.+|+++ +.+|.|...+..++.
T Consensus       331 p~v--~~g~l~v~-~~~G~l~~ld~~tG~  356 (394)
T PRK11138        331 PVL--YNGYLVVG-DSEGYLHWINREDGR  356 (394)
T ss_pred             CEE--ECCEEEEE-eCCCEEEEEECCCCC
Confidence            111  13455555 566777666655543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=1.3e-07  Score=91.37  Aligned_cols=155  Identities=17%  Similarity=0.291  Sum_probs=110.1

Q ss_pred             hhccCCCeEEEEECCC-------------CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          155 LLKHRQSVTAVALSED-------------DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~-------------~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      +..|.+.|.-..+.-+             |.+++||+.||+|.|-.+-+.+....+                    ....
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--------------------df~r  113 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--------------------DFKR  113 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--------------------ecCC
Confidence            3456666665555444             999999999999999998887765533                    4467


Q ss_pred             cEEEEEEcCC-----CCEEEEEeCCCcEEEEeCCC--cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          222 HILALAVSSD-----GRYLASGGLDRHIHLWDTRI--QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       222 ~v~~~~~s~~-----~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      ++.+++++|+     .+.+++|+..| +.++.-.-  .+....+....++|.++.|.  |+++|-++.+| |+|||+.++
T Consensus       114 piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~  189 (846)
T KOG2066|consen  114 PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTR  189 (846)
T ss_pred             cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEecccc
Confidence            7999999997     56899999888 77775321  11111355567899999996  56677766555 899999999


Q ss_pred             ceeEEeecccCCe------EEEEeeCCCeEEEEeCCCcEEEEecCC
Q 010296          295 AYISTLFGHQSEV------LTIDCLRKERVLTVGRDRSMQLWKVPE  334 (513)
Q Consensus       295 ~~~~~~~~~~~~v------~~~~~~~~~~~~~~~~d~~i~iwd~~~  334 (513)
                      +.+..+......+      ..+.|.+..+++ .|...+|++..++.
T Consensus       190 ~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  190 QRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IGWGDSVKICSIKK  234 (846)
T ss_pred             ceeeccCCCCCCCCcccCCCceEecCCCeEE-EecCCeEEEEEEec
Confidence            8887775443333      346666555554 55667888888873

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.90  E-value=1.1e-08  Score=94.23  Aligned_cols=250  Identities=12%  Similarity=0.160  Sum_probs=159.5

Q ss_pred             ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCcccccc-CCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYL-WPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      ..+.-+++.|+.+|..+-|-.+.++++++  ||.|.+||.--+..+... +.+               ..+..+.|.|+.
T Consensus       774 saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dap---------------k~~a~~~ikcl~  836 (1034)
T KOG4190|consen  774 SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAP---------------KEGAGGNIKCLE  836 (1034)
T ss_pred             ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCc---------------ccCCCceeEecc
Confidence            44667889999999999999998888765  789999998777765532 110               112222344432


Q ss_pred             EcCCCCEEEE-EeCCCcEEEEeCCCcceeeecc-----CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296          228 VSSDGRYLAS-GGLDRHIHLWDTRIQEHIQAFP-----GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       228 ~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      -- +...++. ++...+|+++|.+.++.+..++     +..+.+.+++..+.|+.++++-.+|.|.+.|.++|+.+..+.
T Consensus       837 nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  837 NV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             cC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence            11 3334444 4678999999999887665553     345678999999999999999999999999999999888777


Q ss_pred             cccCCeEEEEeeCCCeEEEEeCCCcEEE-EecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCC-CeeE
Q 010296          302 GHQSEVLTIDCLRKERVLTVGRDRSMQL-WKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK-KPVY  379 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~~~~~~~~d~~i~i-wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~  379 (513)
                      ........++...+..++....|.++.+ |....+.......+........-+-.-.+++......+.+|--... ....
T Consensus       916 pmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~s  995 (1034)
T KOG4190|consen  916 PMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAES  995 (1034)
T ss_pred             cccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhh
Confidence            6666666665544555666677888888 8766555443222211111111111123666666666667642111 0000


Q ss_pred             EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEE
Q 010296          380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRL  448 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~v  448 (513)
                      ++...                                ......+..++++.-|-..-++.|...|.|.+
T Consensus       996 titKi--------------------------------R~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  996 TITKI--------------------------------RPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             hhccc--------------------------------cccccCCccceeeeccccchhhccCCCCceee
Confidence            11000                                00222334788888887777888888888876

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.90  E-value=1.6e-07  Score=91.07  Aligned_cols=110  Identities=17%  Similarity=0.201  Sum_probs=87.7

Q ss_pred             eEEEEECCCCCeEEEEe----CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          162 VTAVALSEDDSKGFSAS----KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       162 V~~~~~s~~~~~l~t~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      -+-+.|+|...+|++++    ..|.|.||- ++|++....                    .-.-.+++++|+|..-.|+.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--------------------t~P~hatSLCWHpe~~vLa~   76 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--------------------TYPVHATSLCWHPEEFVLAQ   76 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--------------------ccceehhhhccChHHHHHhh
Confidence            34468999999998876    457888874 444433211                    11223677999999888899


Q ss_pred             EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 010296          238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE  292 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  292 (513)
                      |=.-|.+.+|...+.+.......|..+|..+.|+++|..|+++..-|.|.+|.+.
T Consensus        77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            9888999999988877776677799999999999999999999999999999876

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.89  E-value=8.8e-07  Score=78.87  Aligned_cols=189  Identities=16%  Similarity=0.147  Sum_probs=125.0

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT  249 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~  249 (513)
                      ++.++++++.++.|..||..+|+.+..+.....                ....   .  ...+..+++++.++.|+.+|.
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----------------~~~~---~--~~~~~~v~v~~~~~~l~~~d~   93 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----------------ISGA---P--VVDGGRVYVGTSDGSLYALDA   93 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----------------GGSG---E--EEETTEEEEEETTSEEEEEET
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----------------ccce---e--eecccccccccceeeeEeccc
Confidence            567788888999999999999987765411000                0011   1  123556677778889999999


Q ss_pred             CCcceeeec-cCcC---CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC----------eEEEEeeCC
Q 010296          250 RIQEHIQAF-PGHR---GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE----------VLTIDCLRK  315 (513)
Q Consensus       250 ~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v~~~~~~~~  315 (513)
                      .+|+.+..+ ....   .....+.....+..++++..++.|..+|+.+|+.+.........          +..-....+
T Consensus        94 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (238)
T PF13360_consen   94 KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD  173 (238)
T ss_dssp             TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT
T ss_pred             CCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC
Confidence            999988774 3221   12233333334788888888999999999999998777653322          112222235


Q ss_pred             CeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEE
Q 010296          316 ERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       316 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  380 (513)
                      +.+++++.++.+..+|+.++..+. ......+..+....++.+++++.++.|.+||+.+++.+..
T Consensus       174 ~~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  174 GRVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TEEEEECCTSSEEEEETTTTEEEE-EECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCCEEE-EecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            577788878864444999998664 3334444443445556777777999999999999987643

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=7.6e-09  Score=89.69  Aligned_cols=120  Identities=17%  Similarity=0.300  Sum_probs=96.0

Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc-----ceeeeccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCC
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ-----EHIQAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAE  292 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~  292 (513)
                      ..+.|.++.|...++++..|+.+|.|.++|++.+     .+...+. |...|+++.... ++++|++.+.+|+|++||++
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            5667999999998999999999999999999865     3444554 899999998877 78899999999999999999


Q ss_pred             CCce---eEEeecccCCeEEEEe--eC-CCeEEEEeCCCcEEEEecCCCeeeE
Q 010296          293 DRAY---ISTLFGHQSEVLTIDC--LR-KERVLTVGRDRSMQLWKVPEESRLV  339 (513)
Q Consensus       293 ~~~~---~~~~~~~~~~v~~~~~--~~-~~~~~~~~~d~~i~iwd~~~~~~~~  339 (513)
                      .-++   +.++.+|-..-.-+-+  .+ .+.+++++.|...+||.++.+..+.
T Consensus       330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~  382 (425)
T KOG2695|consen  330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC  382 (425)
T ss_pred             hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence            7776   8888888654333333  22 4567788899999999998877664

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.86  E-value=3.8e-08  Score=82.11  Aligned_cols=171  Identities=19%  Similarity=0.254  Sum_probs=111.1

Q ss_pred             CCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE
Q 010296          146 PEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA  225 (513)
Q Consensus       146 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (513)
                      .....++..+..|+++=.+-+.+-.++.++++..||.+.+++.+.-..+..-   .              ...|.+ -.+
T Consensus        76 t~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~---i--------------~~~~~~-~as  137 (319)
T KOG4714|consen   76 DDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSR---I--------------PSIHSG-SAS  137 (319)
T ss_pred             ccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhh---c--------------cccccc-ccc
Confidence            3344555666677777666667777888999999999999998752211100   0              001111 112


Q ss_pred             EEEcCCCCEEEEEe-----CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCce-eE
Q 010296          226 LAVSSDGRYLASGG-----LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAY-IS  298 (513)
Q Consensus       226 ~~~s~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~  298 (513)
                      .+....++.+.++.     .-+..+.|+++..+....-......|++++-+|..+ .+++|+.||.|.+||.+.... +.
T Consensus       138 ~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S  217 (319)
T KOG4714|consen  138 RKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS  217 (319)
T ss_pred             cceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH
Confidence            22223444444432     124456666654332222222233489999998655 466888899999999998754 34


Q ss_pred             EeecccCCeEEEEeeCC--CeEEEEeCCCcEEEEecCC
Q 010296          299 TLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLWKVPE  334 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~  334 (513)
                      .+..|..+++.+.|+|.  ..|++++.||.+..||..+
T Consensus       218 ~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  218 LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            56789999999999995  4899999999999999875

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.86  E-value=2.8e-08  Score=94.63  Aligned_cols=179  Identities=15%  Similarity=0.270  Sum_probs=127.5

Q ss_pred             eEEEEECCC--CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC-CEEEEE
Q 010296          162 VTAVALSED--DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG-RYLASG  238 (513)
Q Consensus       162 V~~~~~s~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~  238 (513)
                      |-.+.|+|.  ..+-++......-.+|++........                ...+.+|...|+.+.|+|+. ..|+++
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI----------------ef~lhghsraitd~n~~~q~pdVlatc  133 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI----------------EFVLHGHSRAITDINFNPQHPDVLATC  133 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccce----------------EEEEecCccceeccccCCCCCcceeec
Confidence            556677664  33444444455567888764332110                11357899999999999964 578999


Q ss_pred             eCCCcEEEEeCCCcc-eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-ceeEEeecccCCeEEEEeeC--
Q 010296          239 GLDRHIHLWDTRIQE-HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-AYISTLFGHQSEVLTIDCLR--  314 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~--  314 (513)
                      +.|-.+..||+++-. ++..+..-......++|+-....+++.+....|++||++.+ .++..+++|...|+.+.|..  
T Consensus       134 svdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~  213 (1081)
T KOG0309|consen  134 SVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK  213 (1081)
T ss_pred             cccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhh
Confidence            999999999998753 45555544556678999887777777888889999999876 45677888988999999876  


Q ss_pred             CCeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCC
Q 010296          315 KERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISND  356 (513)
Q Consensus       315 ~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~  356 (513)
                      .+.+++++.|++|++|+.......  .......++..-.+.|-|
T Consensus       214 ~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg  257 (1081)
T KOG0309|consen  214 YSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG  257 (1081)
T ss_pred             hhhhcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence            467889999999999998654322  333344556655666644

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.85  E-value=3.3e-06  Score=84.75  Aligned_cols=135  Identities=7%  Similarity=0.062  Sum_probs=100.0

Q ss_pred             eCCCcEEEEeCCCcceeeeccCcCCC-eEEEEEec-----CCCeEEEEeCCCcEEEEeCCCCc--eeEE---eecccCCe
Q 010296          239 GLDRHIHLWDTRIQEHIQAFPGHRGP-VSCLTFRQ-----GTSELFSGSFDRTVKIWNAEDRA--YIST---LFGHQSEV  307 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~--~~~~---~~~~~~~v  307 (513)
                      .....|+-.|++.|+++..+..|... |..++-..     .....+.|-.+..|..||.+-..  ++..   ........
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            34578999999999999999887654 54443221     12346778888999999998642  2321   11244567


Q ss_pred             EEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecC
Q 010296          308 LTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLL  373 (513)
Q Consensus       308 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~  373 (513)
                      .|++...+|++++|+.+|.|++||--..... .+.+...+|..+.++.+|+.+.+..+..|.|++..
T Consensus       581 s~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  581 SCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             eEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence            8888889999999999999999995433222 44566789999999999998888888899998863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.85  E-value=3.1e-06  Score=72.43  Aligned_cols=196  Identities=12%  Similarity=0.108  Sum_probs=119.2

Q ss_pred             EEEecCCCeEEEEeCCCcEEEEeCCCC--ceeEEe---ecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEe
Q 010296          268 LTFRQGTSELFSGSFDRTVKIWNAEDR--AYISTL---FGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFR  341 (513)
Q Consensus       268 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~  341 (513)
                      ++.+.+|+.||.. .|..|.|-..+..  ..+.+.   +.....-+.++|+||+.++ .+...|+|++||+.........
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~   81 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP   81 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence            5667788766654 5667766655432  122222   2233456889999999776 5667899999999865544322


Q ss_pred             cC-------CCCeeEEEeecCC-------eEEEEeCCCCEEEEecCCC-----CeeEEeecCCCcccCCCCcccCcCccc
Q 010296          342 AP-------ASSLECCCFISND-------EFLSGSDDGSIELWSLLRK-----KPVYIVKNAHPLLDGLKNFEQDEGKIS  402 (513)
Q Consensus       342 ~~-------~~~v~~~~~~~~~-------~~~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~  402 (513)
                      ..       ...|..+.|.+..       .|++-...|.++-|-+..+     +....+...                  
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~------------------  143 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS------------------  143 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec------------------
Confidence            21       1334455554432       3667777777777665322     222222211                  


Q ss_pred             cccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC-----------CcEEEEEeCCCCcceeeeee--------
Q 010296          403 NGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN-----------GSVRLWAIESETKDIQPLYN--------  463 (513)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----------g~v~vwd~~~~~~~~~~~~~--------  463 (513)
                                      ......|+++.++|..++|++|+..           --+.-|.+-++....+....        
T Consensus       144 ----------------~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~  207 (282)
T PF15492_consen  144 ----------------SHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITAS  207 (282)
T ss_pred             ----------------ccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccc
Confidence                            1123348899999988888777521           13667776544211111000        


Q ss_pred             ------------------cCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          464 ------------------LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       464 ------------------~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                                        ......|..|..||||..||+. ..+|.|.+|++..
T Consensus       208 ~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~i-h~sG~lsLW~iPs  260 (282)
T PF15492_consen  208 SKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACI-HFSGSLSLWEIPS  260 (282)
T ss_pred             ccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEE-EcCCeEEEEecCc
Confidence                              0124568899999999999999 9999999998754

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.84  E-value=1.1e-07  Score=93.06  Aligned_cols=184  Identities=19%  Similarity=0.202  Sum_probs=135.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEE
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI  310 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  310 (513)
                      ++..++.|+....+..+|+++.+..+...-..+.|.-|.  .+++++++|...|+|.+-|.++.+.++++..|++.|..+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            455677888888899999998887776654444454444  567899999999999999999999999999999999888


Q ss_pred             EeeCCCeEEEEeC---------CCcEEEEecCCCeeeEEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCC-Cee
Q 010296          311 DCLRKERVLTVGR---------DRSMQLWKVPEESRLVFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRK-KPV  378 (513)
Q Consensus       311 ~~~~~~~~~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~-~~~  378 (513)
                      ... ++.|++||.         |..|+|||++..+.+.-..-.....-+.|.|.-  ++++++..|...+.|..+. .+.
T Consensus       224 Dv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~  302 (1118)
T KOG1275|consen  224 DVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP  302 (1118)
T ss_pred             ecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc
Confidence            764 456667763         567899999987766433333333556677753  5888999999999884332 121


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      ......                                  ......+..+++|++|+.|+.|..+|.|.+|.-
T Consensus       303 ~~~~~v----------------------------------~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  303 AGVKMV----------------------------------NPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cceeEE----------------------------------ccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            111100                                  111223899999999999999999999999983

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.84  E-value=5.3e-09  Score=62.98  Aligned_cols=38  Identities=34%  Similarity=0.462  Sum_probs=35.6

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEe
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWD  187 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd  187 (513)
                      ++++++.+|.+.|++|+|+|++.+|++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45678899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=8.9e-08  Score=86.15  Aligned_cols=255  Identities=15%  Similarity=0.120  Sum_probs=167.4

Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC---cceeeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCC
Q 010296          218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI---QEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAED  293 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~  293 (513)
                      -|...|+.+..+ -.+++.+++.||.++.|.-..   -+.+..+..|.+.|.+++.+.++..+.+.+. |..++++|+.+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            466667776555 467999999999999998543   2345667779999999999999999999777 99999999987


Q ss_pred             CceeEEeec--ccCCeEEEEeeCCC--eEEEE--eCCCcEEEEecCCCeee---EEecCCCCeeEEEeecCCe-EEEEeC
Q 010296          294 RAYISTLFG--HQSEVLTIDCLRKE--RVLTV--GRDRSMQLWKVPEESRL---VFRAPASSLECCCFISNDE-FLSGSD  363 (513)
Q Consensus       294 ~~~~~~~~~--~~~~v~~~~~~~~~--~~~~~--~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~-~~~~~~  363 (513)
                      ...+..++.  .++.+.. ..++..  .+++.  ..++.+.++|-....+.   ....|.++|.++.+.+.+. +++...
T Consensus        86 ~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             cchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            655533321  2222222 223332  23333  36899999998765432   4556889999999999886 778888


Q ss_pred             CCCEEEEecCC-CC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296          364 DGSIELWSLLR-KK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA  441 (513)
Q Consensus       364 dg~i~iwd~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  441 (513)
                      .|.|.-|.... .+ +...+.....                        .....+.........+++.|+|++..+.+-+
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K------------------------~eTdLy~f~K~Kt~pts~Efsp~g~qistl~  220 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELK------------------------HETDLYGFPKAKTEPTSFEFSPDGAQISTLN  220 (558)
T ss_pred             cceeEeecCCCcccCcccccccccc------------------------ccchhhcccccccCccceEEccccCcccccC
Confidence            99999999763 11 1110000000                        0000111133445588999999999999999


Q ss_pred             CCCcEEEEEeCCCCcceeeeeec--------------C----------------c-ccEEEEEEeecCCCEEEEEecCCC
Q 010296          442 GNGSVRLWAIESETKDIQPLYNL--------------P----------------L-VGFVNSLAFAKSGQFLIAGVGQEP  490 (513)
Q Consensus       442 ~dg~v~vwd~~~~~~~~~~~~~~--------------~----------------~-~~~v~~v~~sp~~~~l~~~~~~dg  490 (513)
                      .|..|+++.+.++ +.++.+...              .                + ...-+.+.|...|++|+.+ +-= 
T Consensus       221 ~DrkVR~F~~KtG-klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~-t~~-  297 (558)
T KOG0882|consen  221 PDRKVRGFVFKTG-KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYG-TIL-  297 (558)
T ss_pred             cccEEEEEEeccc-hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEee-cce-
Confidence            9999999999887 222222111              0                0 1234567888889999887 322 


Q ss_pred             cccccccCCCc
Q 010296          491 RLGRWGHLPAA  501 (513)
Q Consensus       491 ~v~~W~~~~~~  501 (513)
                      .|++.++.++.
T Consensus       298 gikvin~~tn~  308 (558)
T KOG0882|consen  298 GIKVINLDTNT  308 (558)
T ss_pred             eEEEEEeecCe
Confidence            35666665543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=4e-07  Score=88.08  Aligned_cols=187  Identities=12%  Similarity=0.120  Sum_probs=136.0

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST  299 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  299 (513)
                      ...++|++++  +++|+.|+.+|.|++++.. +.+ .+...|...      .-.|.++++|+.||+|.|-.+-+.+...+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3457778887  7899999999999999865 333 333335443      56799999999999999999998887776


Q ss_pred             eecccCCeEEEEeeCC------CeEEEEeCCCcEEEEecC---CCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEE
Q 010296          300 LFGHQSEVLTIDCLRK------ERVLTVGRDRSMQLWKVP---EESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELW  370 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~~------~~~~~~~~d~~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iw  370 (513)
                      +. ...++.+++++|+      .++++||..| +.++.-+   ...........++|.++.|..  .+++-..|--|++|
T Consensus       109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g--~lIAWand~Gv~vy  184 (846)
T KOG2066|consen  109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG--NLIAWANDDGVKVY  184 (846)
T ss_pred             Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC--cEEEEecCCCcEEE
Confidence            65 6778999999996      4788999888 7777532   222334566678899998854  46666666669999


Q ss_pred             ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      |+.+.+.+..++..+...                               ........+.|.++. .|+.|=.| +|+|..
T Consensus       185 d~~~~~~l~~i~~p~~~~-------------------------------R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~  231 (846)
T KOG2066|consen  185 DTPTRQRLTNIPPPSQSV-------------------------------RPELFPPHLHWQDED-RLVIGWGD-SVKICS  231 (846)
T ss_pred             eccccceeeccCCCCCCC-------------------------------CcccCCCceEecCCC-eEEEecCC-eEEEEE
Confidence            999999888887655321                               111125567887764 45555544 799998


Q ss_pred             eCC
Q 010296          451 IES  453 (513)
Q Consensus       451 ~~~  453 (513)
                      ++.
T Consensus       232 I~~  234 (846)
T KOG2066|consen  232 IKK  234 (846)
T ss_pred             Eec
Confidence            873

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.1e-06  Score=78.35  Aligned_cols=149  Identities=17%  Similarity=0.196  Sum_probs=97.0

Q ss_pred             eeccccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChh--hhccCCCCCCCCCC
Q 010296          139 IASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEE--VLKSHGAKDPQGRA  216 (513)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  216 (513)
                      .+++....+..+.++..+ |...-.++.+++....+.-+ ....+-+-.-..+..   +.+...  .+..+.... ...+
T Consensus       116 ~a~~~s~~ps~q~~a~hk-h~qk~f~v~r~~gcrli~y~-~~~s~lv~sQks~qa---~lpGvGv~~l~~~~fks-sq~l  189 (463)
T KOG1645|consen  116 EAARISQEPSGQAFAIHK-HKQKSFSVGRNAGCRLIGYD-ESSSTLVVSQKSGQA---LLPGVGVQKLESHDFKS-SQIL  189 (463)
T ss_pred             hhhhhccCchhhHHHHHh-hcccceeeeecCCceEEecc-cccceeeeeccchhh---cCCccceEEeccCCcch-hhcc
Confidence            334444444445555555 77777788888765544433 222222222222211   111111  111111111 2245


Q ss_pred             CCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCC
Q 010296          217 TKQSKHILALAVSSDGR-YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  294 (513)
                      ..|...|..++|||..+ ++..++.+..|+|.|+++..++..+..+ ..+++++|.-+. ++|++|-.+|.|.|||++..
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            67888999999999776 7888999999999999999999999877 889999998765 56778889999999999864

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.80  E-value=5.5e-09  Score=101.35  Aligned_cols=215  Identities=14%  Similarity=0.181  Sum_probs=150.9

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC--cEEEEeCC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR--TVKIWNAE  292 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~  292 (513)
                      .+..|....+|++|+-..++|+.|+..|.|++|++.+|.....+.+|..+|+.+.-+.+|..+++.+.-.  ...+|++.
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            4567888999999999999999999999999999999999999999999999999999998877655433  46789986


Q ss_pred             C-CceeEEeecccCCeEEEEeeCCCeE-EEEeCCCcEEEEecCCCeee-EEe----cCCCCeeEEEeecCCeEEEEeCCC
Q 010296          293 D-RAYISTLFGHQSEVLTIDCLRKERV-LTVGRDRSMQLWKVPEESRL-VFR----APASSLECCCFISNDEFLSGSDDG  365 (513)
Q Consensus       293 ~-~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~-~~~----~~~~~v~~~~~~~~~~~~~~~~dg  365 (513)
                      . +...+.+.    .-.++.|+....+ +.++......+||+.++..+ ++.    .....-.++.|+|...++..  ||
T Consensus      1176 s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln--dG 1249 (1516)
T KOG1832|consen 1176 STGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN--DG 1249 (1516)
T ss_pred             cccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee--Cc
Confidence            5 34444443    2356777764332 23444467899999987665 211    12233467889999886653  55


Q ss_pred             CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc
Q 010296          366 SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS  445 (513)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~  445 (513)
                        .+||++....++.+.....                                      -..-.|+|.|.-++.-+    
T Consensus      1250 --vLWDvR~~~aIh~FD~ft~--------------------------------------~~~G~FHP~g~eVIINS---- 1285 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIHRFDQFTD--------------------------------------YGGGGFHPSGNEVIINS---- 1285 (1516)
T ss_pred             --eeeeeccHHHHhhhhhhee--------------------------------------cccccccCCCceEEeec----
Confidence              5899998877766643221                                      12335889998888765    


Q ss_pred             EEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE
Q 010296          446 VRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       446 v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~  485 (513)
                       .|||+++.    +.+...|.- .-..|.|+..|..+.+.
T Consensus      1286 -EIwD~RTF----~lLh~VP~L-dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1286 -EIWDMRTF----KLLHSVPSL-DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             -hhhhhHHH----HHHhcCccc-cceEEEeccCccchhhh
Confidence             48999876    333332221 13456787777766554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=9.2e-08  Score=86.05  Aligned_cols=274  Identities=15%  Similarity=0.102  Sum_probs=173.9

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      -|...|+.+..+. .+++.+++.||.++.|.-..-..+..                ...+..|...|.+++.+-++.++.
T Consensus         7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEf----------------VKhFraHL~~I~sl~~S~dg~L~~   69 (558)
T KOG0882|consen    7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEF----------------VKHFRAHLGVILSLAVSYDGWLFR   69 (558)
T ss_pred             cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceee----------------hhhhHHHHHHHHhhhccccceeEe
Confidence            4888888877654 57899999999999998654222211                113467888899999999999999


Q ss_pred             EEeC-CCcEEEEeCCCcceeeeccCcCCCeEEEEE-ecCC--C-eEE-EEeCCCcEEEEeCCCCce--eEEeecccCCeE
Q 010296          237 SGGL-DRHIHLWDTRIQEHIQAFPGHRGPVSCLTF-RQGT--S-ELF-SGSFDRTVKIWNAEDRAY--ISTLFGHQSEVL  308 (513)
Q Consensus       237 s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~--~-~l~-~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~  308 (513)
                      |++. |..++++|+.+-..+..++...-+ ..+.| ...|  . .|+ +.-.++.|.|+|-....+  ...-.-|..+|.
T Consensus        70 Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~  148 (558)
T KOG0882|consen   70 SVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVK  148 (558)
T ss_pred             eccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceE
Confidence            9777 999999998866554333321111 12222 2222  1 233 334578999999776542  333355899999


Q ss_pred             EEEeeCCC-eEEEEeCCCcEEEEecCCC-----eee-----------EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEE
Q 010296          309 TIDCLRKE-RVLTVGRDRSMQLWKVPEE-----SRL-----------VFRAPASSLECCCFISNDE-FLSGSDDGSIELW  370 (513)
Q Consensus       309 ~~~~~~~~-~~~~~~~d~~i~iwd~~~~-----~~~-----------~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iw  370 (513)
                      ++.+++-+ .+++....|.|..|.....     ..+           .+........++.|+|.+. +.+-+.|..|+++
T Consensus       149 ~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F  228 (558)
T KOG0882|consen  149 KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF  228 (558)
T ss_pred             EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEE
Confidence            99999866 5567778999999998741     101           1223456678899999996 6677899999999


Q ss_pred             ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCC-CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296          371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN-LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW  449 (513)
Q Consensus       371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw  449 (513)
                      .+.+++.++.+.............     .+.+....-+. +....-........-+.++|...|++|+-|+-=| |+|.
T Consensus       229 ~~KtGklvqeiDE~~t~~~~q~ks-----~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvi  302 (558)
T KOG0882|consen  229 VFKTGKLVQEIDEVLTDAQYQPKS-----PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVI  302 (558)
T ss_pred             Eeccchhhhhhhccchhhhhcccc-----ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEE
Confidence            999999887765432211000000     00000000000 0000000011122356788999999999998776 8899


Q ss_pred             EeCCC
Q 010296          450 AIESE  454 (513)
Q Consensus       450 d~~~~  454 (513)
                      ++.++
T Consensus       303 n~~tn  307 (558)
T KOG0882|consen  303 NLDTN  307 (558)
T ss_pred             EeecC
Confidence            98876

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.77  E-value=4.2e-08  Score=85.20  Aligned_cols=156  Identities=17%  Similarity=0.257  Sum_probs=114.9

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-----ceeEE
Q 010296          227 AVSSD--GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-----AYIST  299 (513)
Q Consensus       227 ~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~  299 (513)
                      +|+-+  +-. ++.+.+-.|-+-++.+|-. +.|. ..+.|.++.|...+++++.|+.+|.|..+|++.+     .+...
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            55532  334 4444567788889887753 2333 5678999999998999999999999999999875     34555


Q ss_pred             eecccCCeEEEEeeC-C-CeEEEEeCCCcEEEEecCCCee----eEEecCCCCeeEEEe--ec-CCeEEEEeCCCCEEEE
Q 010296          300 LFGHQSEVLTIDCLR-K-ERVLTVGRDRSMQLWKVPEESR----LVFRAPASSLECCCF--IS-NDEFLSGSDDGSIELW  370 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~-~-~~~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~~~~--~~-~~~~~~~~~dg~i~iw  370 (513)
                      +. |...|+++.... + ..+++.+.+|+|++||++..++    ..+.+|...-.-+-+  .+ .|.+++++.|...+||
T Consensus       295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW  373 (425)
T KOG2695|consen  295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW  373 (425)
T ss_pred             EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence            55 889999988765 3 4677888999999999986554    355666543332222  22 3457899999999999


Q ss_pred             ecCCCCeeEEeecCCC
Q 010296          371 SLLRKKPVYIVKNAHP  386 (513)
Q Consensus       371 d~~~~~~~~~~~~~~~  386 (513)
                      .+..+..+.+++....
T Consensus       374 sl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  374 SLDSGHLLCTIPFPYS  389 (425)
T ss_pred             ecccCceeeccCCCCc
Confidence            9999999998875543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.77  E-value=3.6e-06  Score=80.56  Aligned_cols=144  Identities=17%  Similarity=0.227  Sum_probs=106.2

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      |...|.--+++..+++++.|+.-|.|++|+-..+.....-                  ..+....+..+..|++..++|.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAa   93 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAA   93 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhh
Confidence            5666777788889999999999999999998777654321                  1223455777788999999999


Q ss_pred             EeCCCcEEEEeCCCccee-----eec-cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc----eeEEeecccCCe
Q 010296          238 GGLDRHIHLWDTRIQEHI-----QAF-PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA----YISTLFGHQSEV  307 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~-----~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v  307 (513)
                      |+..|.|.++-+....+.     ... +.|...|++++|++++..+++|..-|.|.+-.+.+..    ..+.+....+.|
T Consensus        94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I  173 (726)
T KOG3621|consen   94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI  173 (726)
T ss_pred             hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence            999999999988764321     111 2378899999999999999999999999999887721    123333456677


Q ss_pred             EEEEeeCCCeEEE
Q 010296          308 LTIDCLRKERVLT  320 (513)
Q Consensus       308 ~~~~~~~~~~~~~  320 (513)
                      ..+.+. ++.+++
T Consensus       174 VQlD~~-q~~LLV  185 (726)
T KOG3621|consen  174 VQLDYL-QSYLLV  185 (726)
T ss_pred             EEeecc-cceehH
Confidence            777765 344443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.76  E-value=1.9e-05  Score=74.54  Aligned_cols=260  Identities=15%  Similarity=0.125  Sum_probs=140.7

Q ss_pred             CCCCCeEEEEe---------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          168 SEDDSKGFSAS---------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       168 s~~~~~l~t~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      |||+++++...         ..+.+.|||+.++......                    .....+....|||+|+.+|..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~--------------------~~~~~~~~~~~sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT--------------------PPPPKLQDAKWSPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---------------------EETTBSEEEE-SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc--------------------CCccccccceeecCCCeeEEE
Confidence            68888887643         2467899999987655421                    114568889999999999988


Q ss_pred             eCCCcEEEEeCCCcceeeec-cC-------c---------CCCeEEEEEecCCCeEEEEeCC-Cc---------------
Q 010296          239 GLDRHIHLWDTRIQEHIQAF-PG-------H---------RGPVSCLTFRQGTSELFSGSFD-RT---------------  285 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~-~~-------~---------~~~v~~~~~~~~~~~l~~~~~d-g~---------------  285 (513)
                      . ++.|.++++.++...+.- .+       -         -+.-..+-|+|++++|+....| ..               
T Consensus        61 ~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~  139 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQ  139 (353)
T ss_dssp             E-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTES
T ss_pred             e-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCcccc
Confidence            7 678999998777544221 11       0         1223568899999998865432 22               


Q ss_pred             --------------------EEEEeCCCCceeEEe-----ecccCCeEEEEeeCCCe-EEEEe--CC---CcEEEEecCC
Q 010296          286 --------------------VKIWNAEDRAYISTL-----FGHQSEVLTIDCLRKER-VLTVG--RD---RSMQLWKVPE  334 (513)
Q Consensus       286 --------------------i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~~~~~--~d---~~i~iwd~~~  334 (513)
                                          +.|+++.+++....-     .....-+..+.|.+++. ++..-  .+   ..+.++|..+
T Consensus       140 yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t  219 (353)
T PF00930_consen  140 YPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST  219 (353)
T ss_dssp             S-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT
T ss_pred             CCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC
Confidence                                333444444332111     11233467788888876 55332  22   2355667765


Q ss_pred             Ceee--EEecCCCC---eeEEEee-cCC-e-EEEEeCCCCEEEEec--CCCCeeEEeecCCCcccCCCCcccCcCccccc
Q 010296          335 ESRL--VFRAPASS---LECCCFI-SND-E-FLSGSDDGSIELWSL--LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNG  404 (513)
Q Consensus       335 ~~~~--~~~~~~~~---v~~~~~~-~~~-~-~~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  404 (513)
                      +...  ........   .....+. +++ . +.....+|.-+||-+  ..+.+ ..+...                    
T Consensus       220 g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G--------------------  278 (353)
T PF00930_consen  220 GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSG--------------------  278 (353)
T ss_dssp             TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-S--------------------
T ss_pred             CceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccC--------------------
Confidence            4433  22222222   2244444 444 3 335557776555543  33332 222111                    


Q ss_pred             cCCCCCCCCCCcCCCCCcceEE-EEEEecCCCEEE-EecCC--CcEEEEEeCCC-CcceeeeeecCcccEEEEEEeecCC
Q 010296          405 HSENGNLNPGSYHSSSAYSWVS-SVTVCGGSDLAA-SGAGN--GSVRLWAIESE-TKDIQPLYNLPLVGFVNSLAFAKSG  479 (513)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~-~g~~d--g~v~vwd~~~~-~~~~~~~~~~~~~~~v~~v~~sp~~  479 (513)
                                       .-.|+ -+.++++++.|+ ++..+  +.-.||.+.-. ...++.+.......  ..+.|||+|
T Consensus       279 -----------------~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~--~~~~~Spdg  339 (353)
T PF00930_consen  279 -----------------DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH--YSASFSPDG  339 (353)
T ss_dssp             -----------------SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT--EEEEE-TTS
T ss_pred             -----------------ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc--eEEEECCCC
Confidence                             11153 467888776554 44442  34455554433 33444444322222  689999999


Q ss_pred             CEEEEEecC
Q 010296          480 QFLIAGVGQ  488 (513)
Q Consensus       480 ~~l~~~~~~  488 (513)
                      ++++..++.
T Consensus       340 ~y~v~~~s~  348 (353)
T PF00930_consen  340 KYYVDTYSG  348 (353)
T ss_dssp             SEEEEEEES
T ss_pred             CEEEEEEcC
Confidence            999877554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.73  E-value=2.4e-07  Score=90.72  Aligned_cols=178  Identities=16%  Similarity=0.254  Sum_probs=131.8

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT  249 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~  249 (513)
                      ++..++.|+-...+..+|+.+.+..+..                   .-....|+-|..  ++++|.+|...|+|.+-|.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-------------------~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~  204 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-------------------NVSASGVTIMRY--NNRNLFCGDTRGTVFLRDP  204 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeee-------------------eccCCceEEEEe--cCcEEEeecccceEEeecC
Confidence            3455677777777788888877665432                   111222544444  5889999999999999999


Q ss_pred             CCcceeeeccCcCCCeEEEEEecCCCeEEEEeC---------CCcEEEEeCCCCceeEEeecccCCeEEEEeeC--CCeE
Q 010296          250 RIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---------DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR--KERV  318 (513)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~  318 (513)
                      ++.+.++++..|++.|..+..  .|+.|++|+.         |.-|+|||++..+.+.-+.-+.++ .-+.|+|  ..++
T Consensus       205 ~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~  281 (1118)
T KOG1275|consen  205 NSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRL  281 (1118)
T ss_pred             CcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceE
Confidence            999999999999999987665  5788998874         566899999987766555433333 4556777  4688


Q ss_pred             EEEeCCCcEEEEe---cCCCe--eeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEe
Q 010296          319 LTVGRDRSMQLWK---VPEES--RLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWS  371 (513)
Q Consensus       319 ~~~~~d~~i~iwd---~~~~~--~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd  371 (513)
                      ++++..|...+-|   +....  ...+......+..+.+++++. ++.|..+|.|.+|.
T Consensus       282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            8999999999998   43332  223444455689999999987 77999999999998

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.71  E-value=4.8e-08  Score=58.73  Aligned_cols=39  Identities=26%  Similarity=0.612  Sum_probs=36.7

Q ss_pred             cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEe
Q 010296          252 QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN  290 (513)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  290 (513)
                      ++++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.67  E-value=2.4e-05  Score=70.12  Aligned_cols=268  Identities=12%  Similarity=0.099  Sum_probs=157.6

Q ss_pred             ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe----------CCCcEEEEeCC
Q 010296          181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG----------LDRHIHLWDTR  250 (513)
Q Consensus       181 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------~dg~i~vwd~~  250 (513)
                      +.+.|+|..+++.+-.+                     ..+-.-.+..+|+++.+++++          ..-.|.+||..
T Consensus        17 ~rv~viD~d~~k~lGmi---------------------~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~   75 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMI---------------------DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ   75 (342)
T ss_dssp             EEEEEEETTTTEEEEEE---------------------EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred             ceEEEEECCCCcEEEEe---------------------ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence            57899998888866543                     112233467899999888754          23469999999


Q ss_pred             CcceeeeccCc---C----CCeEEEEEecCCCeEEEEe--CCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEE
Q 010296          251 IQEHIQAFPGH---R----GPVSCLTFRQGTSELFSGS--FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTV  321 (513)
Q Consensus       251 ~~~~~~~~~~~---~----~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  321 (513)
                      +..+...+.-.   .    .....++++.++++++...  --.+|.|.|+..++.+..+.  ...+..+--.++..|.+.
T Consensus        76 TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PGC~~iyP~~~~~F~~l  153 (342)
T PF06433_consen   76 TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TPGCWLIYPSGNRGFSML  153 (342)
T ss_dssp             TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GTSEEEEEEEETTEEEEE
T ss_pred             cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CCCEEEEEecCCCceEEE
Confidence            88776543211   1    1223468888999887653  34679999999998887764  222333333345678899


Q ss_pred             eCCCcEEEEecCCC-eee-----EEecCCCCee-EEEeec-CCeEEEEeCCCCEEEEecCCCCeeEEee--cCCCcccCC
Q 010296          322 GRDRSMQLWKVPEE-SRL-----VFRAPASSLE-CCCFIS-NDEFLSGSDDGSIELWSLLRKKPVYIVK--NAHPLLDGL  391 (513)
Q Consensus       322 ~~d~~i~iwd~~~~-~~~-----~~~~~~~~v~-~~~~~~-~~~~~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~  391 (513)
                      |.||.+....+... +..     .+.....++. .-++.. .+.++-.+..|.|+-.|+........-.  ......   
T Consensus       154 C~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e---  230 (342)
T PF06433_consen  154 CGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE---  230 (342)
T ss_dssp             ETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH---
T ss_pred             ecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccc---
Confidence            99999999888743 222     1111122222 223333 3467778889999998888765433221  100000   


Q ss_pred             CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec--------CCC--cEEEEEeCCCCcceeee
Q 010296          392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA--------GNG--SVRLWAIESETKDIQPL  461 (513)
Q Consensus       392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~--------~dg--~v~vwd~~~~~~~~~~~  461 (513)
                               .      ...+         .++.-.-+++++..+.|++--        .|+  .|.++|+.++    +.+
T Consensus       231 ---------~------~~~W---------rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~----krv  282 (342)
T PF06433_consen  231 ---------K------ADGW---------RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH----KRV  282 (342)
T ss_dssp             ---------H------HTTE---------EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT----EEE
T ss_pred             ---------c------ccCc---------CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC----eEE
Confidence                     0      0000         011134567776555554431        122  4778888777    334


Q ss_pred             eecCcccEEEEEEeecCCC-EEEEEecCCCcccccccCCCcc
Q 010296          462 YNLPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       462 ~~~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      ..++...++.+|+.+.+.+ +|++....++.|.+||..++..
T Consensus       283 ~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  283 ARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             EEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            4444556788999998877 5555546789999999888754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.65  E-value=1.3e-05  Score=76.43  Aligned_cols=223  Identities=11%  Similarity=0.050  Sum_probs=115.3

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      ....-....+.++|+|+++++++ +|...|+.......                        ...+.-..++|.+.+ .+
T Consensus        29 g~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~------------------------k~~G~g~~~vw~~~n-~y   82 (443)
T PF04053_consen   29 GSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN------------------------KAFGSGLSFVWSSRN-RY   82 (443)
T ss_dssp             EE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE------------------------EEEEE-SEEEE-TSS-EE
T ss_pred             CCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc------------------------cccCceeEEEEecCc-cE
Confidence            34455688999999999999955 67777777433222                        123446678899855 46


Q ss_pred             EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  315 (513)
                      |+-...+.|.|+.--.......++. ...+..|-.   |..|+..+.+ .|.+||+.+++.+..+...  +|..+.|+++
T Consensus        83 Av~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~  155 (443)
T PF04053_consen   83 AVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD  155 (443)
T ss_dssp             EEE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred             EEEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence            6666688899964223333233332 123344433   7777766654 8999999999999988633  3899999999


Q ss_pred             CeEEEEeCCCcEEEEecCCC------------eeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          316 ERVLTVGRDRSMQLWKVPEE------------SRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       316 ~~~~~~~~d~~i~iwd~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      +.+++...+..+.+++....            ...........|.+.+|..+ .|+-.+.. .|+.  +..|..- ++..
T Consensus       156 g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~Ge~~-~i~~  230 (443)
T PF04053_consen  156 GELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNGETG-IIAH  230 (443)
T ss_dssp             SSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETTEEE-EEEE
T ss_pred             CCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcCCcc-eEEE
Confidence            98887777888999876544            22222222445666666555 33322222 4444  2222211 1110


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~  453 (513)
                      .                                     ..++.=+.+.|..+.++....++.|..+.+..
T Consensus       231 l-------------------------------------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  231 L-------------------------------------DKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             --------------------------------------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             c-------------------------------------CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            0                                     11255666777667788888888888877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.64  E-value=9.6e-06  Score=82.48  Aligned_cols=261  Identities=11%  Similarity=0.081  Sum_probs=148.1

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      .+.|.++.|.-+...++.+...|.|.+-|..+.....                    ...-...|.+++||||+.+++..
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~li  127 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLALI  127 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEEE
Confidence            4689999999999999999999999999877655332                    12346679999999999999999


Q ss_pred             eCCCcEEEEeCCCcceeeeccCc-----CCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce-eEEeecccCCeEEEEe
Q 010296          239 GLDRHIHLWDTRIQEHIQAFPGH-----RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY-ISTLFGHQSEVLTIDC  312 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~  312 (513)
                      +..+++.+-+ .+-.++...+-+     .+..-.+-|-...+.+ -|+. |.....+...... .... .....=++|.|
T Consensus       128 T~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs~-gr~~~~~~~~~ek~~~~~-~~~~~~~~IsW  203 (1265)
T KOG1920|consen  128 TGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQF-RGSE-GRQAARQKIEKEKALEQI-EQDDHKTSISW  203 (1265)
T ss_pred             eCCcEEEEEe-ccccchhccccccccccccccceecccccceee-ecch-hhhcccccccccccccch-hhccCCceEEE
Confidence            8877776543 333333222111     1112222332211111 1110 1111111000000 0000 12223357899


Q ss_pred             eCCCeEEEEe-----CC-CcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEE-E---EeCCCCEEEEecCCCCeeEEee
Q 010296          313 LRKERVLTVG-----RD-RSMQLWKVPEESRLVFRAPASSLECCCFISNDEFL-S---GSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       313 ~~~~~~~~~~-----~d-~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~---~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      -.+|.+++.+     .+ +.|++||-...-..........-.+++|-|.|.++ +   -..++.|.+|..+. -....+.
T Consensus       204 RgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG-L~hg~f~  282 (1265)
T KOG1920|consen  204 RGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFV  282 (1265)
T ss_pred             ccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC-ccccccc
Confidence            9999766552     34 89999997722111222333445678999988643 3   23566788887433 2222221


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE---ecCCCcEEEEEeCCCCccee
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS---GAGNGSVRLWAIESETKDIQ  459 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~---g~~dg~v~vwd~~~~~~~~~  459 (513)
                      ...                                 +.....|..++|+.++.+||+   ......|++|-+.+-.-.++
T Consensus       283 l~~---------------------------------p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLK  329 (1265)
T KOG1920|consen  283 LPF---------------------------------PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLK  329 (1265)
T ss_pred             cCC---------------------------------cccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEE
Confidence            111                                 111222899999999999988   45555699999987643344


Q ss_pred             eeeecCcccEEEEEEeecCCC
Q 010296          460 PLYNLPLVGFVNSLAFAKSGQ  480 (513)
Q Consensus       460 ~~~~~~~~~~v~~v~~sp~~~  480 (513)
                      ....++....   +.|+|--.
T Consensus       330 q~l~~~~~~~---~~W~p~~~  347 (1265)
T KOG1920|consen  330 QELQFSQKAL---LMWDPVTE  347 (1265)
T ss_pred             EEEecccccc---ccccCCCc
Confidence            4444333222   67777543

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.59  E-value=5e-05  Score=73.71  Aligned_cols=250  Identities=9%  Similarity=0.050  Sum_probs=134.5

Q ss_pred             EEEEeCCceEEEEeCCCCccccccCC--------------ChhhhccCCCCCCCCCCCCCcccEEEEEEc---CCCCEEE
Q 010296          174 GFSASKDGSILHWDVSSGKGVKYLWP--------------SEEVLKSHGAKDPQGRATKQSKHILALAVS---SDGRYLA  236 (513)
Q Consensus       174 l~t~~~dg~v~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~  236 (513)
                      |.+|+..|.|+|+=+.+++.+..+.-              +...+...........-..|.-   .+.+.   -||++|+
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp---~~s~t~g~ydGr~~f  145 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHP---HMSFTDGTYDGRYLF  145 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCC---cccccCCccceeEEE
Confidence            56899999999999999988776520              0011110000000000001111   12222   2678888


Q ss_pred             EEeC-CCcEEEEeCCCcceeeeccC-cCCCeEEEE-------------------EecCCCeEE-EEeCCCcEEEEeCCCC
Q 010296          237 SGGL-DRHIHLWDTRIQEHIQAFPG-HRGPVSCLT-------------------FRQGTSELF-SGSFDRTVKIWNAEDR  294 (513)
Q Consensus       237 s~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~-------------------~~~~~~~l~-~~~~dg~i~iwd~~~~  294 (513)
                      .-.. +..|-..++...++-..+.- ....+..+.                   +.|+|+.+. +.-..+.+.+.|..+.
T Consensus       146 indk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm  225 (635)
T PRK02888        146 INDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM  225 (635)
T ss_pred             EecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc
Confidence            7664 45566666554443222110 111222222                   334555443 2223466778888877


Q ss_pred             ceeEEeecccCCeEEEEeeCCCeEE-EEe----------------------------------------CCCcEEEEecC
Q 010296          295 AYISTLFGHQSEVLTIDCLRKERVL-TVG----------------------------------------RDRSMQLWKVP  333 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~~~~~-~~~----------------------------------------~d~~i~iwd~~  333 (513)
                      +...++.- .+....+.+++++.++ +++                                        .++.|.++|..
T Consensus       226 eV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~  304 (635)
T PRK02888        226 EVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGR  304 (635)
T ss_pred             eEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECC
Confidence            66665542 2233455556655433 222                                        12457777777


Q ss_pred             C-----CeeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296          334 E-----ESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS  406 (513)
Q Consensus       334 ~-----~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  406 (513)
                      +     .....+..-......+.++|+|+  ++++..+.+|.|+|+.+.+....-+...           ....+..   
T Consensus       305 t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~-----------~~~vvae---  370 (635)
T PRK02888        305 KAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP-----------RDAVVAE---  370 (635)
T ss_pred             ccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc-----------cceEEEe---
Confidence            6     33444555566778899999997  4467779999999998865422111000           0000000   


Q ss_pred             CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296          407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~  453 (513)
                                  ..........+|.++|....|-.-|..|..|++..
T Consensus       371 ------------vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        371 ------------PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ------------eccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                        00001144678899998888888899999999876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=4.8e-05  Score=74.75  Aligned_cols=201  Identities=14%  Similarity=0.242  Sum_probs=133.6

Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc-EEEEEEcCCCCEEEEEe
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH-ILALAVSSDGRYLASGG  239 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~  239 (513)
                      .|+  +|++.+..++.|+.+|.|.+.+-. -+.+..                   +..+... |..+....+..+|++.+
T Consensus        27 ~is--c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~   84 (933)
T KOG2114|consen   27 AIS--CCSSSTGSVVIGTADGRVVILNSS-FQLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVG   84 (933)
T ss_pred             cee--EEcCCCceEEEeeccccEEEeccc-ceeeeh-------------------heecchhhhhHhhcccCceEEEEEe
Confidence            444  466788899999999988877632 111121                   1233333 44444444446788776


Q ss_pred             CCC-----cEEEEeCCCc------cee---eec----cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC----CCcee
Q 010296          240 LDR-----HIHLWDTRIQ------EHI---QAF----PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE----DRAYI  297 (513)
Q Consensus       240 ~dg-----~i~vwd~~~~------~~~---~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~  297 (513)
                      .|+     .|+||+++.-      .++   +.+    +....++.+++.+.+-+.+++|-.+|.|.++.-.    .+...
T Consensus        85 Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~  164 (933)
T KOG2114|consen   85 EDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ  164 (933)
T ss_pred             ecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce
Confidence            654     5899998632      222   111    1235678999999998999999999999998532    12222


Q ss_pred             EEeecccCCeEEEEeeCCCeE-EEEeCCCcEEEEecCCCe--eeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecC
Q 010296          298 STLFGHQSEVLTIDCLRKERV-LTVGRDRSMQLWKVPEES--RLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLL  373 (513)
Q Consensus       298 ~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~  373 (513)
                      .-......+|+.+.+..++.. +.+.....|.+|.+....  ......+..++.|..+++... |++++. ..+.+|+..
T Consensus       165 ~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd  243 (933)
T KOG2114|consen  165 DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSD  243 (933)
T ss_pred             eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCC
Confidence            223345678999999887744 455566789999998655  234667778888988888765 666654 459999988


Q ss_pred             CCCeeEEeecC
Q 010296          374 RKKPVYIVKNA  384 (513)
Q Consensus       374 ~~~~~~~~~~~  384 (513)
                      ..++...+...
T Consensus       244 ~~~~cfaf~~g  254 (933)
T KOG2114|consen  244 GRGPCFAFEVG  254 (933)
T ss_pred             CcceeeeecCC
Confidence            87777777633

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=3.3e-06  Score=82.30  Aligned_cols=109  Identities=10%  Similarity=0.114  Sum_probs=86.6

Q ss_pred             EEEEEEcCCCCEEEEEeC----CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296          223 ILALAVSSDGRYLASGGL----DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      -+-..|+|...+|++++.    .|.|.||- .+|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            344689999999988763    58898884 6676544332 22235679999988788888889999999998887777


Q ss_pred             EeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecC
Q 010296          299 TLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVP  333 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~  333 (513)
                      ....|+.+|..+.|+++| .++++..-|.|.+|...
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            777899999999999987 56688889999999875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.47  E-value=2e-05  Score=80.29  Aligned_cols=231  Identities=13%  Similarity=0.084  Sum_probs=138.3

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST  299 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  299 (513)
                      ...|.++.|..+...++.+...|.|.+-|..+.... ....-...|.+++|+|++..++..+..++|.+-. .+..++..
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E  145 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAE  145 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhc
Confidence            367999999999999999999999999988766432 2223567899999999999999888877776543 22222221


Q ss_pred             eecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee--------EE---ecCCCCeeEEEeecCCeEEEE-----eC
Q 010296          300 LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL--------VF---RAPASSLECCCFISNDEFLSG-----SD  363 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--------~~---~~~~~~v~~~~~~~~~~~~~~-----~~  363 (513)
                      ..-      ...-.+.+.++.++....=.-+....++..        ..   ......-+.++|-.+|.+++.     ..
T Consensus       146 ~~L------~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  146 KPL------DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET  219 (1265)
T ss_pred             ccc------ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence            110      111122344454444332222222111110        00   012233456889999964432     23


Q ss_pred             C-CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-
Q 010296          364 D-GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-  441 (513)
Q Consensus       364 d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-  441 (513)
                      + ..|+|||.. +..-.+-.                                     ...+.-.+++|-|.|.++++-. 
T Consensus       220 ~~RkirV~drE-g~Lns~se-------------------------------------~~~~l~~~LsWkPsgs~iA~iq~  261 (1265)
T KOG1920|consen  220 GTRKIRVYDRE-GALNSTSE-------------------------------------PVEGLQHSLSWKPSGSLIAAIQC  261 (1265)
T ss_pred             CceeEEEeccc-chhhcccC-------------------------------------cccccccceeecCCCCeEeeeee
Confidence            4 789999976 33221111                                     1111256899999999988763 


Q ss_pred             --CCCcEEEEEeCCCCcceeeeeecCc-ccEEEEEEeecCCCEEEE--EecCCCccccccc
Q 010296          442 --GNGSVRLWAIESETKDIQPLYNLPL-VGFVNSLAFAKSGQFLIA--GVGQEPRLGRWGH  497 (513)
Q Consensus       442 --~dg~v~vwd~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~--~~~~dg~v~~W~~  497 (513)
                        .|+.|.+|.-+... .-......+. ...|..++|+.++..|++  ++.....|++|.+
T Consensus       262 ~~sd~~IvffErNGL~-hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  262 KTSDSDIVFFERNGLR-HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             cCCCCcEEEEecCCcc-ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence              55679999865431 1111111222 334999999999999987  2244455999954

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.47  E-value=0.00033  Score=62.99  Aligned_cols=249  Identities=15%  Similarity=0.166  Sum_probs=146.8

Q ss_pred             eEEEEECCCCCeEEEEe----------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          162 VTAVALSEDDSKGFSAS----------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       162 V~~~~~s~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      .-.+.++|+++.+++++          ..-.|.+||..+......+.-+..         +  +. ........++++.+
T Consensus        38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k---------~--R~-~~~~~~~~~~ls~d  105 (342)
T PF06433_consen   38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK---------P--RA-QVVPYKNMFALSAD  105 (342)
T ss_dssp             SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS------------B---BS--GGGEEE-TT
T ss_pred             CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc---------c--hh-eecccccceEEccC
Confidence            34467899999998754          245699999998876654310000         0  00 00112334688999


Q ss_pred             CCEEEEEeC--CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC-CCceeEEe----eccc
Q 010296          232 GRYLASGGL--DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE-DRAYISTL----FGHQ  304 (513)
Q Consensus       232 ~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~----~~~~  304 (513)
                      ++++++...  ...|.|.|+..++.+..+...  .+..+--+++ ..+.+.|.||.+.-..+. .|+...+.    ....
T Consensus       106 gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~  182 (342)
T PF06433_consen  106 GKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDD  182 (342)
T ss_dssp             SSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTT
T ss_pred             CcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCCCC
Confidence            998887643  467999999999988877632  2222222222 457888899999999887 45543221    1112


Q ss_pred             CCeE-EEEeeC-CCeEEEEeCCCcEEEEecCCCeeeEEe---c----------CCCCeeEEEeecC-CeEEEE---eCCC
Q 010296          305 SEVL-TIDCLR-KERVLTVGRDRSMQLWKVPEESRLVFR---A----------PASSLECCCFISN-DEFLSG---SDDG  365 (513)
Q Consensus       305 ~~v~-~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~~~---~----------~~~~v~~~~~~~~-~~~~~~---~~dg  365 (513)
                      .++. .-.+.. .+.++..+..|.|+-.++.........   .          ..+...-+++++. ++|.+-   +.+|
T Consensus       183 dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g  262 (342)
T PF06433_consen  183 DPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEG  262 (342)
T ss_dssp             S-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT
T ss_pred             cccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCC
Confidence            2222 223333 457888899999999988776533111   0          0123344566653 343221   1122


Q ss_pred             -------CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EE
Q 010296          366 -------SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LA  437 (513)
Q Consensus       366 -------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l  437 (513)
                             .|-+||+.+++.+..+...++                                      +.+|.++.+.+ +|
T Consensus       263 sHKdpgteVWv~D~~t~krv~Ri~l~~~--------------------------------------~~Si~Vsqd~~P~L  304 (342)
T PF06433_consen  263 SHKDPGTEVWVYDLKTHKRVARIPLEHP--------------------------------------IDSIAVSQDDKPLL  304 (342)
T ss_dssp             -TTS-EEEEEEEETTTTEEEEEEEEEEE--------------------------------------ESEEEEESSSS-EE
T ss_pred             CccCCceEEEEEECCCCeEEEEEeCCCc--------------------------------------cceEEEccCCCcEE
Confidence                   377789999999998875443                                      77999998775 66


Q ss_pred             EEe-cCCCcEEEEEeCCCCcceeeeeec
Q 010296          438 ASG-AGNGSVRLWAIESETKDIQPLYNL  464 (513)
Q Consensus       438 ~~g-~~dg~v~vwd~~~~~~~~~~~~~~  464 (513)
                      ++. ..++.|.+||..++ +.+..+..+
T Consensus       305 ~~~~~~~~~l~v~D~~tG-k~~~~~~~l  331 (342)
T PF06433_consen  305 YALSAGDGTLDVYDAATG-KLVRSIEQL  331 (342)
T ss_dssp             EEEETTTTEEEEEETTT---EEEEE---
T ss_pred             EEEcCCCCeEEEEeCcCC-cEEeehhcc
Confidence            544 56799999999998 555555544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.46  E-value=0.00025  Score=69.99  Aligned_cols=237  Identities=13%  Similarity=0.160  Sum_probs=134.5

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE-EEEEcCCCCEEEEEe---------CC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL-ALAVSSDGRYLASGG---------LD  241 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~---------~d  241 (513)
                      ..++.++.++.|.-+|..+++.+..+.......              ....+. +..+.  +..++.++         .+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~--------------~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~  174 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP--------------PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVR  174 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcC--------------cceEecCCCEEE--CCEEEEeccccccccCCCC
Confidence            578888889999999999999876542111000              000000 01111  23444443         36


Q ss_pred             CcEEEEeCCCcceeeeccCcCC--------------------Ce-EEEEEecCCCeEEEEeCCC----------------
Q 010296          242 RHIHLWDTRIQEHIQAFPGHRG--------------------PV-SCLTFRQGTSELFSGSFDR----------------  284 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~~~~--------------------~v-~~~~~~~~~~~l~~~~~dg----------------  284 (513)
                      |.|..+|..+|+.+-.+.....                    .| ...++.+.+..++.++.++                
T Consensus       175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~  254 (488)
T cd00216         175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLY  254 (488)
T ss_pred             cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCc
Confidence            7899999999988766543211                    11 1234455566777777665                


Q ss_pred             --cEEEEeCCCCceeEEeecccCCeE------EEEee----CCC----eEEEEeCCCcEEEEecCCCeeeEEecCCCCee
Q 010296          285 --TVKIWNAEDRAYISTLFGHQSEVL------TIDCL----RKE----RVLTVGRDRSMQLWKVPEESRLVFRAPASSLE  348 (513)
Q Consensus       285 --~i~iwd~~~~~~~~~~~~~~~~v~------~~~~~----~~~----~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~  348 (513)
                        .|..+|+.+++.+..+........      ...+.    -++    .+++++.+|.+..+|..+++.+......  ..
T Consensus       255 ~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~  332 (488)
T cd00216         255 TDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQ  332 (488)
T ss_pred             eeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--cc
Confidence              799999999998877642211111      00111    122    3557778999999999999877332211  11


Q ss_pred             EEEeecCCeEEEE------------------eCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCC
Q 010296          349 CCCFISNDEFLSG------------------SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN  410 (513)
Q Consensus       349 ~~~~~~~~~~~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  410 (513)
                      .+...| +.++.+                  ..+|.|.-.|+.+++.+-..........                     
T Consensus       333 ~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~---------------------  390 (488)
T cd00216         333 PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDS---------------------  390 (488)
T ss_pred             ccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccc---------------------
Confidence            123333 332221                  2467888899999988776653210000                     


Q ss_pred             CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCc
Q 010296          411 LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETK  456 (513)
Q Consensus       411 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~  456 (513)
                      ..      .........+..  .+.+|++++.||.|+.+|..++..
T Consensus       391 ~~------~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~  428 (488)
T cd00216         391 WN------IGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKE  428 (488)
T ss_pred             cc------cCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCce
Confidence            00      000000112222  456889999999999999999843

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.46  E-value=0.00014  Score=71.63  Aligned_cols=197  Identities=11%  Similarity=0.132  Sum_probs=116.1

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE--EEEEcCCCCEEEEEeCCCcEEEEe
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL--ALAVSSDGRYLASGGLDRHIHLWD  248 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~s~~~dg~i~vwd  248 (513)
                      +..++.++.++.|.-.|..+++.+..+......             ..+...+.  .++.. ++..++.++.++.|+.+|
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~-------------~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD  126 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPA-------------DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALD  126 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCc-------------cccccccccCCcEEc-cCCeEEEecCCCeEEEEE
Confidence            455777888899999999999877644111000             00000000  11121 225778888899999999


Q ss_pred             CCCcceeeeccCcCCC-----e-EEEEEecCCCeEEEEe---------CCCcEEEEeCCCCceeEEeecccCC-------
Q 010296          249 TRIQEHIQAFPGHRGP-----V-SCLTFRQGTSELFSGS---------FDRTVKIWNAEDRAYISTLFGHQSE-------  306 (513)
Q Consensus       249 ~~~~~~~~~~~~~~~~-----v-~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~-------  306 (513)
                      ..+|+.+-.+......     + .+..+.  +..++.++         .+|.|..+|..+++.+..+......       
T Consensus       127 ~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~  204 (488)
T cd00216         127 AETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW  204 (488)
T ss_pred             CCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence            9999988766543221     1 111222  23455543         3688999999999988776432110       


Q ss_pred             -------------e-EEEEeeC-CCeEEEEeCCC------------------cEEEEecCCCeeeEEec-CCCCe-----
Q 010296          307 -------------V-LTIDCLR-KERVLTVGRDR------------------SMQLWKVPEESRLVFRA-PASSL-----  347 (513)
Q Consensus       307 -------------v-~~~~~~~-~~~~~~~~~d~------------------~i~iwd~~~~~~~~~~~-~~~~v-----  347 (513)
                                   + .+..+.+ .+.+++++.++                  .|.-+|+.+++..-... .....     
T Consensus       205 ~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~  284 (488)
T cd00216         205 GPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDG  284 (488)
T ss_pred             CCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccccc
Confidence                         1 1123333 35666766554                  68889999888773321 11100     


Q ss_pred             -eEEEee----cCC----eEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          348 -ECCCFI----SND----EFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       348 -~~~~~~----~~~----~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                       ....+.    -++    .+++++.+|.+..+|..+++.+.....
T Consensus       285 ~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~  329 (488)
T cd00216         285 PNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE  329 (488)
T ss_pred             CCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe
Confidence             000111    122    266888999999999999999887653

The alignment model contains an 8-bladed beta-propeller.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.45  E-value=0.00048  Score=58.38  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=72.2

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE-EEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL-ALAVSSDGRYLASGGLDRHIHLWDT  249 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~vwd~  249 (513)
                      |.+++.|+..|.+++.++.+|.....+..                    ...|. .....+++.++.+|+.|++.+..|.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~--------------------~~~vk~~a~~d~~~glIycgshd~~~yalD~  122 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI--------------------LETVKVRAQCDFDGGLIYCGSHDGNFYALDP  122 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeee--------------------hhhhccceEEcCCCceEEEecCCCcEEEecc
Confidence            56789999999999999999977654411                    11111 1234567999999999999999999


Q ss_pred             CCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          250 RIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      .+..++...+...+...+-+..|....|+.+...|.|.--..+..
T Consensus       123 ~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  123 KTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             cccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            999998887754444444556664445666666666655554443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.43  E-value=4.7e-05  Score=71.75  Aligned_cols=223  Identities=16%  Similarity=0.151  Sum_probs=124.6

Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCCcccc-ccCC---------------ChhhhccCC--------CCCCCCCC
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVK-YLWP---------------SEEVLKSHG--------AKDPQGRA  216 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~-~~~~---------------~~~~~~~~~--------~~~~~~~~  216 (513)
                      .|++|.|.++..-|++|...|.|.||.+...+... .-.+               ...+.....        .-.|...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58999999999999999999999999876543321 0000               000000000        01112223


Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeee--ccC------cCCCeEEEEEec-----CC---CeEEEE
Q 010296          217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA--FPG------HRGPVSCLTFRQ-----GT---SELFSG  280 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~---~~l~~~  280 (513)
                      ....++|++++.| +=.++|.|..+|.+.|.|++....+..  +..      ....|+++.|..     ++   -.|++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            3447889999998 455999999999999999987776654  111      334688888863     22   458899


Q ss_pred             eCCCcEEEEeCCC---Cce----eEEeecccCCeEEEEee-CC---------------------CeEEEEeCCCcEEEEe
Q 010296          281 SFDRTVKIWNAED---RAY----ISTLFGHQSEVLTIDCL-RK---------------------ERVLTVGRDRSMQLWK  331 (513)
Q Consensus       281 ~~dg~i~iwd~~~---~~~----~~~~~~~~~~v~~~~~~-~~---------------------~~~~~~~~d~~i~iwd  331 (513)
                      +..|.+.+|.+.-   +..    ......+.++|..+... .+                     ..++++.....++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999998741   222    11222355666666532 11                     1266667788999999


Q ss_pred             cCCCeeeEEecCC-CCeeEEEee-----cCCe-EEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296          332 VPEESRLVFRAPA-SSLECCCFI-----SNDE-FLSGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       332 ~~~~~~~~~~~~~-~~v~~~~~~-----~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                      ..+.+........ .....+++.     ..+. |++-..+|.|++|.+...+.+..+...
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~  301 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP  301 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence            8876655322211 222234443     1233 778889999999999999998887753

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=0.0001  Score=72.56  Aligned_cols=190  Identities=14%  Similarity=0.152  Sum_probs=123.1

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCC-eEEEEEecCCCeEEEEeCCC-----cEEEEeCCCC------
Q 010296          227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGP-VSCLTFRQGTSELFSGSFDR-----TVKIWNAEDR------  294 (513)
Q Consensus       227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~------  294 (513)
                      +|++++..+|.|+.+|.|.+++ ++-+.++.++.+... |..+.......+|++.+.|+     .|+||++...      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            4677889999999999998887 344555777777776 55555444446788776654     4899998642      


Q ss_pred             cee--EEeec-----ccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCC-----CeeeEEecCCCCeeEEEeecCCe-EEE
Q 010296          295 AYI--STLFG-----HQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPE-----ESRLVFRAPASSLECCCFISNDE-FLS  360 (513)
Q Consensus       295 ~~~--~~~~~-----~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~-~~~  360 (513)
                      .++  ..+.+     ...++.+++.+.+-..+ +|-.+|.|..+.-.-     .+.........+|+.+++..++. ++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            233  12222     24567888888775444 666788888885321     11223344567899999988885 233


Q ss_pred             EeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe
Q 010296          361 GSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG  440 (513)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g  440 (513)
                      ......|.+|.+....|......                                    .+...+.|.++++...-|+++
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld------------------------------------~~G~~lnCss~~~~t~qfIca  232 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLD------------------------------------NNGISLNCSSFSDGTYQFICA  232 (933)
T ss_pred             EEecceeEEEEecCCCcceeeec------------------------------------cCCccceeeecCCCCccEEEe
Confidence            44456789999884443333222                                    222338888888866646655


Q ss_pred             cCCCcEEEEEeCCC
Q 010296          441 AGNGSVRLWAIESE  454 (513)
Q Consensus       441 ~~dg~v~vwd~~~~  454 (513)
                      +.. .|.+|+....
T Consensus       233 ~~e-~l~fY~sd~~  245 (933)
T KOG2114|consen  233 GSE-FLYFYDSDGR  245 (933)
T ss_pred             cCc-eEEEEcCCCc
Confidence            544 6999998765

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.35  E-value=0.00017  Score=72.83  Aligned_cols=132  Identities=12%  Similarity=0.052  Sum_probs=94.9

Q ss_pred             CCCcEEEEeCCCCceeEEeecccCC-eEEEEeeC------CCeEEEEeCCCcEEEEecCCCe--eeE----EecCCCCee
Q 010296          282 FDRTVKIWNAEDRAYISTLFGHQSE-VLTIDCLR------KERVLTVGRDRSMQLWKVPEES--RLV----FRAPASSLE  348 (513)
Q Consensus       282 ~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~------~~~~~~~~~d~~i~iwd~~~~~--~~~----~~~~~~~v~  348 (513)
                      ....|+-.|+..|+.+..+..+... |..++-..      +...+.|-.++.|..||.+-..  .+.    .........
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            4577999999999999988766644 55554321      2356778889999999998643  221    123445688


Q ss_pred             EEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296          349 CCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV  428 (513)
Q Consensus       349 ~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  428 (513)
                      |++...+|++|+|+.+|.||+||- .++.-.+.-                                    ++-..+|..|
T Consensus       582 ~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~l------------------------------------p~lG~pI~~i  624 (794)
T PF08553_consen  582 CFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTAL------------------------------------PGLGDPIIGI  624 (794)
T ss_pred             EEEecCCceEEEEeCCCcEEeecc-cchhhhhcC------------------------------------CCCCCCeeEE
Confidence            999999999999999999999993 222111111                                    2333559999


Q ss_pred             EEecCCCEEEEecCCCcEEEEEe
Q 010296          429 TVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       429 ~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      ..+.||++|++.+.. .|.|++.
T Consensus       625 Dvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  625 DVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             EecCCCcEEEEeecc-eEEEEEE
Confidence            999999998877754 7888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.34  E-value=0.00038  Score=66.17  Aligned_cols=75  Identities=16%  Similarity=0.174  Sum_probs=61.1

Q ss_pred             CCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          420 SAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       420 ~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      ...+.|.+++++|+...|+.|+.||.|.+||...+..   ....  ..-.++.++|+|+|.++++| +..|.|.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~k--a~~~P~~iaWHp~gai~~V~-s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAK--AEFIPTLIAWHPDGAIFVVG-SEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee---eeee--ecccceEEEEcCCCcEEEEE-cCCceEEEEEeec
Confidence            3344599999999999999999999999999987622   2222  33457889999999999999 9999999999754


Q ss_pred             C
Q 010296          500 A  500 (513)
Q Consensus       500 ~  500 (513)
                      +
T Consensus       331 s  331 (545)
T PF11768_consen  331 S  331 (545)
T ss_pred             C
Confidence            3

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=2.4e-05  Score=69.98  Aligned_cols=93  Identities=13%  Similarity=0.145  Sum_probs=77.9

Q ss_pred             EEEEeCCCcceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC--eEEE
Q 010296          244 IHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE--RVLT  320 (513)
Q Consensus       244 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~  320 (513)
                      +++.+..+.+....+.+|...|..++|+|..+ ++..++.+..|+|.|+.+...+..+..+ ..+++++|..+.  .+.+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            77777666666777888999999999999877 6778999999999999999888888766 889999998765  4457


Q ss_pred             EeCCCcEEEEecCCCee
Q 010296          321 VGRDRSMQLWKVPEESR  337 (513)
Q Consensus       321 ~~~d~~i~iwd~~~~~~  337 (513)
                      |-..|.|.+||++....
T Consensus       254 Gl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             eccCceEEEEEccCCCc
Confidence            77899999999987653

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.32  E-value=0.00068  Score=63.20  Aligned_cols=214  Identities=15%  Similarity=0.231  Sum_probs=127.2

Q ss_pred             CcEEEEeCCCcceeeeccC-cCCCeEEEEE---ecC----CCeEEEEeC----------CCcEEEEeCCCC----ceeEE
Q 010296          242 RHIHLWDTRIQEHIQAFPG-HRGPVSCLTF---RQG----TSELFSGSF----------DRTVKIWNAEDR----AYIST  299 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~---~~~----~~~l~~~~~----------dg~i~iwd~~~~----~~~~~  299 (513)
                      ..|++.|..+.+.+..+.- ....+.+++.   ..+    ..+|++|+.          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3588888887777665543 2234454443   222    456776643          288999999884    12222


Q ss_pred             e--ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCe-eeE--EecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCC
Q 010296          300 L--FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES-RLV--FRAPASSLECCCFISNDEFLSGSDDGSIELWSLLR  374 (513)
Q Consensus       300 ~--~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~--~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~  374 (513)
                      +  ....++|++++.. +++ +.++..+.|++|++.... ...  +......+.++....+ .+++|..-..+.++.+..
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEET
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEc
Confidence            1  3357889999877 555 545556899999998777 442  2223335556655533 788888888888886544


Q ss_pred             -CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296          375 -KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       375 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~  453 (513)
                       ...+..+..                                   .....+++++.|-++++.++++..+|.|.++....
T Consensus       159 ~~~~l~~va~-----------------------------------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  159 ENNKLILVAR-----------------------------------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             TTE-EEEEEE-----------------------------------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             cCCEEEEEEe-----------------------------------cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence             222333322                                   12234589999987778999999999999999874


Q ss_pred             C------Cc-ceeeeeecCcccEEEEE---EeecC--CC------EEEEEecCCCcccc
Q 010296          454 E------TK-DIQPLYNLPLVGFVNSL---AFAKS--GQ------FLIAGVGQEPRLGR  494 (513)
Q Consensus       454 ~------~~-~~~~~~~~~~~~~v~~v---~~sp~--~~------~l~~~~~~dg~v~~  494 (513)
                      .      .. .+.....+.....|+++   .+.|.  +.      .++.+ +.+|.|..
T Consensus       204 ~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~-T~~G~Ig~  261 (321)
T PF03178_consen  204 EIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYG-TVDGSIGV  261 (321)
T ss_dssp             S-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEE-ETTS-EEE
T ss_pred             CCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEE-ecCCEEEE
Confidence            2      12 34445555456778887   65562  22      24455 78888763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.29  E-value=8.2e-05  Score=72.30  Aligned_cols=181  Identities=9%  Similarity=0.009  Sum_probs=109.4

Q ss_pred             ECCCCCeEEE-EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC----
Q 010296          167 LSEDDSKGFS-ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD----  241 (513)
Q Consensus       167 ~s~~~~~l~t-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----  241 (513)
                      ++|||+.+.. .-..+.+.+.|..+.+....+.                    -......++++|+|+++++.+.+    
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~--------------------Vdgnpd~v~~spdGk~afvTsyNsE~G  259 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVM--------------------VDGNLDNVDTDYDGKYAFSTCYNSEEG  259 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEE--------------------eCCCcccceECCCCCEEEEeccCcccC
Confidence            4556665542 2334667777777666554430                    11134567899999999887642    


Q ss_pred             CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC----C-ceeEEeecccCCeEEEEeeCCC
Q 010296          242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED----R-AYISTLFGHQSEVLTIDCLRKE  316 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~v~~~~~~~~~  316 (513)
                      .++..-+......+..+...  .+  .++.++|++...+  ++.|.+.|..+    + ..+..+. -......+.++|+|
T Consensus       260 ~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDG  332 (635)
T PRK02888        260 VTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDG  332 (635)
T ss_pred             cceeeeccccCceEEEEchH--HH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCC
Confidence            22333322221111111100  00  1234577776653  67899999988    3 4444443 56667899999999


Q ss_pred             eEE--EEeCCCcEEEEecCCCee------------eEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296          317 RVL--TVGRDRSMQLWKVPEESR------------LVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       317 ~~~--~~~~d~~i~iwd~~~~~~------------~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~  374 (513)
                      +.+  ++..+.+|.++|+.+...            .............+|.++|. +.+-.-|..|..|++..
T Consensus       333 kylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        333 KYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            655  444689999999987542            11122233455678888876 66778899999999876

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.28  E-value=0.0033  Score=57.83  Aligned_cols=301  Identities=12%  Similarity=0.084  Sum_probs=138.3

Q ss_pred             eeEEeeccccCCCcccchhhhhccCCCeEEE-----EECCCCCeEEEEe-CCc--eEEEEeCCCCccccccCCChhhhcc
Q 010296          135 VRRVIASRVQKPEATDEFRVLLKHRQSVTAV-----ALSEDDSKGFSAS-KDG--SILHWDVSSGKGVKYLWPSEEVLKS  206 (513)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~-----~~s~~~~~l~t~~-~dg--~v~iwd~~~~~~~~~~~~~~~~~~~  206 (513)
                      ..+.--....++.+...+..|..+...-..+     +|.++|+.|+.++ .+|  .+.+.|+.+++..+..         
T Consensus         6 ~~~~~~~~~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT---------   76 (386)
T PF14583_consen    6 TIPLEFKTWIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT---------   76 (386)
T ss_dssp             EEE--EEEEE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------
T ss_pred             EeccceeEEeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc---------
Confidence            3333344455666666666666544433333     5677887766554 444  5667788888766522         


Q ss_pred             CCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEe--cCCCeEEEEe---
Q 010296          207 HGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR--QGTSELFSGS---  281 (513)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~---  281 (513)
                                .+.........++|+.+.++-......|+-.|+.+.+....+......+-...|.  .++..++..-   
T Consensus        77 ----------dg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~  146 (386)
T PF14583_consen   77 ----------DGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISR  146 (386)
T ss_dssp             -----------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEG
T ss_pred             ----------cCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEee
Confidence                      0001112235667888887766556789999999988766665555555556664  3455544221   


Q ss_pred             -------------------CCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC-CeEEEEeC----CC-cEEEEecCCC-
Q 010296          282 -------------------FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTVGR----DR-SMQLWKVPEE-  335 (513)
Q Consensus       282 -------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~----d~-~i~iwd~~~~-  335 (513)
                                         -...|.-.|+.+++....+. ....+..+.|+|. ..+++-|.    +. .-+||-+.+. 
T Consensus       147 ~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg  225 (386)
T PF14583_consen  147 EDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG  225 (386)
T ss_dssp             GG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred             hhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence                               11346666788876544443 5667788899994 35554332    22 1355655432 


Q ss_pred             -eeeEEecC--CCCeeEEEeecCCe-EE--EEe---CCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296          336 -SRLVFRAP--ASSLECCCFISNDE-FL--SGS---DDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS  406 (513)
Q Consensus       336 -~~~~~~~~--~~~v~~~~~~~~~~-~~--~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  406 (513)
                       .......+  ...+..=-|.++|. +.  ...   .+..|.-+++.+++.......                       
T Consensus       226 ~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----------------------  282 (386)
T PF14583_consen  226 SNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-----------------------  282 (386)
T ss_dssp             ---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----------------------
T ss_pred             CcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-----------------------
Confidence             22222222  12223335777775 22  222   233455667777654332221                       


Q ss_pred             CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC----------------CcEEEEEeCCCCcceeeeeec------
Q 010296          407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN----------------GSVRLWAIESETKDIQPLYNL------  464 (513)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d----------------g~v~vwd~~~~~~~~~~~~~~------  464 (513)
                                      .+...+-.+++|++++-=+.|                -.|+++++..+.  ...+...      
T Consensus       283 ----------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~--~~~l~~h~~sw~v  344 (386)
T PF14583_consen  283 ----------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR--FRKLARHDTSWKV  344 (386)
T ss_dssp             -----------------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE--EEEEEE-------
T ss_pred             ----------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc--eeeeeeccCccee
Confidence                            014455567788777643333                146667776552  1111111      


Q ss_pred             -Ccc--cEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          465 -PLV--GFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       465 -~~~--~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                       .+.  -.=..+.|+|||++++-.+...|...||-
T Consensus       345 ~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  345 LDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             ecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence             000  01245799999999988877777766663

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.27  E-value=0.0015  Score=59.47  Aligned_cols=146  Identities=14%  Similarity=0.127  Sum_probs=90.3

Q ss_pred             CCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010296          169 EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWD  248 (513)
Q Consensus       169 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd  248 (513)
                      ..++.|+.|+.+| |.++++........+                    .+...|..+...|.-+.|++-+ |+.+++++
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~   62 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVYD   62 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE--------------------eecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence            3578899999998 899998332222211                    2333499999999877777766 59999999


Q ss_pred             CCCcceeeec--------------cCcCCCeEEEE--EecCCCeEEEEeCCCcEEEEeCCCC-----ceeEEeecccCCe
Q 010296          249 TRIQEHIQAF--------------PGHRGPVSCLT--FRQGTSELFSGSFDRTVKIWNAEDR-----AYISTLFGHQSEV  307 (513)
Q Consensus       249 ~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v  307 (513)
                      +..-......              ......+..++  -...+...+.......|.+|.....     +....+. ....+
T Consensus        63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~  141 (275)
T PF00780_consen   63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPP  141 (275)
T ss_pred             chhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCc
Confidence            8765443311              11223344444  1223444444445568888887653     3444444 45788


Q ss_pred             EEEEeeCCCeEEEEeCCCcEEEEecCCCeeeE
Q 010296          308 LTIDCLRKERVLTVGRDRSMQLWKVPEESRLV  339 (513)
Q Consensus       308 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~  339 (513)
                      .++.|. ++.++.+. .....+.|+.++....
T Consensus       142 ~~i~~~-~~~i~v~~-~~~f~~idl~~~~~~~  171 (275)
T PF00780_consen  142 SSIAFL-GNKICVGT-SKGFYLIDLNTGSPSE  171 (275)
T ss_pred             EEEEEe-CCEEEEEe-CCceEEEecCCCCceE
Confidence            999998 33444444 5568888988665543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.27  E-value=2.9e-07  Score=86.69  Aligned_cols=200  Identities=18%  Similarity=0.267  Sum_probs=126.9

Q ss_pred             ccEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCcce--eeeccCcCCCeEEEEEecC-CCeEEEEe----CCCcEEEEeC
Q 010296          221 KHILALAVSSDG--RYLASGGLDRHIHLWDTRIQEH--IQAFPGHRGPVSCLTFRQG-TSELFSGS----FDRTVKIWNA  291 (513)
Q Consensus       221 ~~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~----~dg~i~iwd~  291 (513)
                      ..+.|++++-+.  ..+++|..+|.|.+-.++...-  ....++|..++++++|++- .+.|++|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            346777776543  4788899999999988764432  2345668889999999884 45565553    3668999999


Q ss_pred             CCC--cee--EEeec-ccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeec-CCeEEEEeCC
Q 010296          292 EDR--AYI--STLFG-HQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFIS-NDEFLSGSDD  364 (513)
Q Consensus       292 ~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d  364 (513)
                      .++  .+.  ..+.+ ......+++|..+.+++ +|.....+.++|++.............+..+.+.| ...+++...|
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~d  216 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSD  216 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecccc
Confidence            876  221  11222 33345688888777766 66677799999998443322222233455566777 4446677779


Q ss_pred             CCEEEEec-CCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EEEEec
Q 010296          365 GSIELWSL-LRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LAASGA  441 (513)
Q Consensus       365 g~i~iwd~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~  441 (513)
                      |.|.+||. ++- .++..+....                                 ...+..+..++|+|... ++++..
T Consensus       217 g~iAiwD~~rnienpl~~i~~~~---------------------------------N~~~~~l~~~aycPtrtglla~l~  263 (783)
T KOG1008|consen  217 GDIAIWDTYRNIENPLQIILRNE---------------------------------NKKPKQLFALAYCPTRTGLLAVLS  263 (783)
T ss_pred             CceeeccchhhhccHHHHHhhCC---------------------------------CCcccceeeEEeccCCcchhhhhc
Confidence            99999993 322 2222221111                                 11223488999999542 455555


Q ss_pred             -CCCcEEEEEeCC
Q 010296          442 -GNGSVRLWAIES  453 (513)
Q Consensus       442 -~dg~v~vwd~~~  453 (513)
                       ..++|++|++..
T Consensus       264 RdS~tIrlydi~~  276 (783)
T KOG1008|consen  264 RDSITIRLYDICV  276 (783)
T ss_pred             cCcceEEEecccc
Confidence             457899999864

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.26  E-value=1.5e-05  Score=75.39  Aligned_cols=75  Identities=21%  Similarity=0.271  Sum_probs=63.6

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      .+...|.|++++|+...|+.|+.||.|.+||...+....                     ....-.++.++|+|+|..|+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~---------------------~ka~~~P~~iaWHp~gai~~  315 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL---------------------AKAEFIPTLIAWHPDGAIFV  315 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee---------------------eeecccceEEEEcCCCcEEE
Confidence            577899999999999999999999999999987664332                     12344578899999999999


Q ss_pred             EEeCCCcEEEEeCCCc
Q 010296          237 SGGLDRHIHLWDTRIQ  252 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~  252 (513)
                      +|+..|.+.+||+.-.
T Consensus       316 V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  316 VGSEQGELQCFDMALS  331 (545)
T ss_pred             EEcCCceEEEEEeecC
Confidence            9999999999997543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.20  E-value=0.00098  Score=63.01  Aligned_cols=225  Identities=16%  Similarity=0.179  Sum_probs=128.6

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce-------------------------------------------eeec
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEH-------------------------------------------IQAF  258 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-------------------------------------------~~~~  258 (513)
                      .|+.+.|++....|++|...|.|.||.+...+.                                           ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            389999999999999999999999987532111                                           1112


Q ss_pred             cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee--c------ccCCeEEEEeeC-----CC----eEEEE
Q 010296          259 PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF--G------HQSEVLTIDCLR-----KE----RVLTV  321 (513)
Q Consensus       259 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~----~~~~~  321 (513)
                      ....++|++++.+ +-.+++.|..+|.+.|.|++....+..-.  .      ....++++.|.-     ++    .+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            2346889999997 45689999999999999998887766532  1      233577787752     33    46688


Q ss_pred             eCCCcEEEEecCC--Ceee------EEecCCCCeeEEEee-c-----------------CC----eEEEEeCCCCEEEEe
Q 010296          322 GRDRSMQLWKVPE--ESRL------VFRAPASSLECCCFI-S-----------------ND----EFLSGSDDGSIELWS  371 (513)
Q Consensus       322 ~~d~~i~iwd~~~--~~~~------~~~~~~~~v~~~~~~-~-----------------~~----~~~~~~~dg~i~iwd  371 (513)
                      ...|.+.+|.+.-  +...      ....+...+..+... .                 .+    .+++...+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            8999999998742  1111      112344455444321 1                 11    256666678899999


Q ss_pred             cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE-----ecCCCEEEEecCCCcE
Q 010296          372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV-----CGGSDLAASGAGNGSV  446 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----s~~~~~l~~g~~dg~v  446 (513)
                      ..+.+...... ..+.                                    ....+++     ...+..|++-..+|.|
T Consensus       242 ~~~~k~~~K~~-~~~~------------------------------------~~~~~~vv~~~~~~~~~~Lv~l~~~G~i  284 (395)
T PF08596_consen  242 PPKSKGAHKSF-DDPF------------------------------------LCSSASVVPTISRNGGYCLVCLFNNGSI  284 (395)
T ss_dssp             TT---EEEEE--SS-E------------------------------------EEEEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred             CCCCcccceee-cccc------------------------------------ccceEEEEeecccCCceEEEEEECCCcE
Confidence            98887766544 1111                                    0333344     2356678888899999


Q ss_pred             EEEEeCCCCcceeeeeecC--cccEEEEEEeecCCCEEEEE
Q 010296          447 RLWAIESETKDIQPLYNLP--LVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~~~~--~~~~v~~v~~sp~~~~l~~~  485 (513)
                      ++|.+... +.+..+....  ....+....|+++|..++..
T Consensus       285 ~i~SLP~L-kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~  324 (395)
T PF08596_consen  285 RIYSLPSL-KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWT  324 (395)
T ss_dssp             EEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred             EEEECCCc-hHhhcccCCCccccccccccEECCCCCEEEEe
Confidence            99999886 3333332211  22335567789999987766

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.16  E-value=0.00044  Score=66.24  Aligned_cols=219  Identities=10%  Similarity=0.066  Sum_probs=111.9

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST  299 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  299 (513)
                      ......+.++|+|+++++++ +|...|+.....+...     .+....++|.+.+ .+++-...+.|.|+.--.......
T Consensus        32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT--
T ss_pred             CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceE
Confidence            33477899999999999866 7777788743333222     2334568888844 466666688899963222222223


Q ss_pred             eecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC---
Q 010296          300 LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKK---  376 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~---  376 (513)
                      +.. ...+..+-.   |.++....++.|.+||+.+++.+...... +|..+.|++++.+++-..+..+.|++.....   
T Consensus       105 i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~  179 (443)
T PF04053_consen  105 IKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA  179 (443)
T ss_dssp             ----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH
T ss_pred             EcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCeEEEEEecchhccc
Confidence            321 122333332   77776666679999999998777554433 3899999999986666567788888755430   


Q ss_pred             --------eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEE
Q 010296          377 --------PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRL  448 (513)
Q Consensus       377 --------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~v  448 (513)
                              ....+..                                     ....|.+.+|..+ -+++|.. . .|+.
T Consensus       180 ~~~~g~e~~f~~~~E-------------------------------------~~~~IkSg~W~~d-~fiYtT~-~-~lkY  219 (443)
T PF04053_consen  180 IPEEGVEDAFELIHE-------------------------------------ISERIKSGCWVED-CFIYTTS-N-HLKY  219 (443)
T ss_dssp             BTTTB-GGGEEEEEE-------------------------------------E-S--SEEEEETT-EEEEE-T-T-EEEE
T ss_pred             ccccCchhceEEEEE-------------------------------------ecceeEEEEEEcC-EEEEEcC-C-eEEE
Confidence                    1111110                                     0112778888776 3344433 3 5665


Q ss_pred             EEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          449 WAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       449 wd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                        +..+  ....+..+  ..++.=+...|....+... ..++.|..+.+
T Consensus       220 --l~~G--e~~~i~~l--d~~~yllgy~~~~~~ly~~-Dr~~~v~~~~l  261 (443)
T PF04053_consen  220 --LVNG--ETGIIAHL--DKPLYLLGYLPKENRLYLI-DRDGNVISYEL  261 (443)
T ss_dssp             --EETT--EEEEEEE---SS--EEEEEETTTTEEEEE--TT--EEEEE-
T ss_pred             --EEcC--CcceEEEc--CCceEEEEEEccCCEEEEE-ECCCCEEEEEE
Confidence              4444  12223332  3455666667766666666 66766665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.12  E-value=0.0087  Score=58.15  Aligned_cols=202  Identities=16%  Similarity=0.142  Sum_probs=111.4

Q ss_pred             CeEEEEECCCCCeEEEE-eCC----ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          161 SVTAVALSEDDSKGFSA-SKD----GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~-~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      .+..+++||++++||.+ +..    .+|+++|+.+++.+...                    -.......+.|.++++.|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--------------------i~~~~~~~~~W~~d~~~~  184 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--------------------IENPKFSSVSWSDDGKGF  184 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--------------------EEEEESEEEEECTTSSEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--------------------ccccccceEEEeCCCCEE
Confidence            34467899999999854 333    45999999998765421                    001112239999998887


Q ss_pred             EEEeCCC-----------cEEEEeCCCccee--eeccCcCCC--eEEEEEecCCCeEEEEeC---C-CcEEEEeCCCC--
Q 010296          236 ASGGLDR-----------HIHLWDTRIQEHI--QAFPGHRGP--VSCLTFRQGTSELFSGSF---D-RTVKIWNAEDR--  294 (513)
Q Consensus       236 ~s~~~dg-----------~i~vwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~--  294 (513)
                      +....+.           .|+.|.+.+...-  ..+......  ...+..++++++|+..+.   + ..|++.++..+  
T Consensus       185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~  264 (414)
T PF02897_consen  185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS  264 (414)
T ss_dssp             EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred             EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence            7665333           3788887766432  344433332  567889999999774332   2 45888888774  


Q ss_pred             --ceeEEeecccCCeEEEEeeCCCeEEEEe----CCCcEEEEecCCCee----eEEecCCC--CeeEEEeecCCeEEEEe
Q 010296          295 --AYISTLFGHQSEVLTIDCLRKERVLTVG----RDRSMQLWKVPEESR----LVFRAPAS--SLECCCFISNDEFLSGS  362 (513)
Q Consensus       295 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~d~~i~iwd~~~~~~----~~~~~~~~--~v~~~~~~~~~~~~~~~  362 (513)
                        .....+......+....-+.++.|+..+    ..+.|...++.....    ..+..+..  .+..+....+..++...
T Consensus       265 ~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~  344 (414)
T PF02897_consen  265 PDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR  344 (414)
T ss_dssp             SS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred             CcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence              2333333333344333333355554333    246677777766542    23344433  34455544443344544


Q ss_pred             CCC--CEEEEecCCCCeeEEee
Q 010296          363 DDG--SIELWSLLRKKPVYIVK  382 (513)
Q Consensus       363 ~dg--~i~iwd~~~~~~~~~~~  382 (513)
                      .++  .|+++++..+.....+.
T Consensus       345 ~~~~~~l~v~~~~~~~~~~~~~  366 (414)
T PF02897_consen  345 ENGSSRLRVYDLDDGKESREIP  366 (414)
T ss_dssp             ETTEEEEEEEETT-TEEEEEEE
T ss_pred             ECCccEEEEEECCCCcEEeeec
Confidence            444  57788887444444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.08  E-value=0.0027  Score=55.66  Aligned_cols=198  Identities=11%  Similarity=0.102  Sum_probs=111.1

Q ss_pred             hhhccCCCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          154 VLLKHRQSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      .+.+-...+..|+|+|+.. ++++....+.|..++.. ++.+..+                 .+.+ ....-.|++..++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-----------------~l~g-~~D~EgI~y~g~~   76 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-----------------PLDG-FGDYEGITYLGNG   76 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-----------------E-SS--SSEEEEEE-STT
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-----------------eCCC-CCCceeEEEECCC
Confidence            4455566799999999765 55566778888888874 6666654                 1122 3457788888788


Q ss_pred             CEEEEEeCCCcEEEEeCCCcc------eeeec-----cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC---CceeE
Q 010296          233 RYLASGGLDRHIHLWDTRIQE------HIQAF-----PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED---RAYIS  298 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~~------~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~  298 (513)
                      .++++.-.++.+.++++....      ....+     ..+...+..++|.+.++.|+.+-......+|.+..   ...+.
T Consensus        77 ~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~  156 (248)
T PF06977_consen   77 RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF  156 (248)
T ss_dssp             EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E
T ss_pred             EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee
Confidence            777766668899999873321      11111     12456789999999988888887777777776654   21111


Q ss_pred             Ee--------ecccCCeEEEEeeCC-CeEE-EEeCCCcEEEEecCCCeeeEEecC---------CCCeeEEEeecCCeEE
Q 010296          299 TL--------FGHQSEVLTIDCLRK-ERVL-TVGRDRSMQLWKVPEESRLVFRAP---------ASSLECCCFISNDEFL  359 (513)
Q Consensus       299 ~~--------~~~~~~v~~~~~~~~-~~~~-~~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~  359 (513)
                      ..        ......+.++.++|. +.++ .......|..+|............         ......++|.++|.|.
T Consensus       157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY  236 (248)
T PF06977_consen  157 VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY  236 (248)
T ss_dssp             EEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred             eccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence            11        113345788889885 4555 455678888888444322222211         1356789999999887


Q ss_pred             EEeCCCCEEEE
Q 010296          360 SGSDDGSIELW  370 (513)
Q Consensus       360 ~~~~dg~i~iw  370 (513)
                      ..+.-+..++|
T Consensus       237 IvsEpNlfy~f  247 (248)
T PF06977_consen  237 IVSEPNLFYRF  247 (248)
T ss_dssp             EEETTTEEEEE
T ss_pred             EEcCCceEEEe
Confidence            77776665554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.07  E-value=0.002  Score=61.83  Aligned_cols=67  Identities=18%  Similarity=0.269  Sum_probs=46.3

Q ss_pred             EEEcCCCCEEEEEeCC----------C-cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          226 LAVSSDGRYLASGGLD----------R-HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       226 ~~~s~~~~~l~s~~~d----------g-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      ++.+|.|..+|....+          . .|.||+. .|+.+..+.-..+.|.++.|+.+ ..|++...||.+++||+...
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence            4455555555554332          2 5999985 46666665544489999999885 45667778999999998643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.07  E-value=0.014  Score=57.95  Aligned_cols=199  Identities=9%  Similarity=0.028  Sum_probs=109.0

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR  250 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~  250 (513)
                      +..|++++.++.|.-.|..+++.+..+.......     ..+   .......-..+++.  +..++.++.++.|.-+|..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~-----~~~---~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~  138 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDD-----VIP---VMCCDVVNRGVALY--DGKVFFGTLDARLVALDAK  138 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcc-----ccc---ccccccccccceEE--CCEEEEEcCCCEEEEEECC
Confidence            4567778888899999999998876542110000     000   00000000112222  3467778889999999999


Q ss_pred             CcceeeeccCc--C--CCeEEEEEecCCCeEEEEe------CCCcEEEEeCCCCceeEEeecccC---------------
Q 010296          251 IQEHIQAFPGH--R--GPVSCLTFRQGTSELFSGS------FDRTVKIWNAEDRAYISTLFGHQS---------------  305 (513)
Q Consensus       251 ~~~~~~~~~~~--~--~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~---------------  305 (513)
                      +|+.+-.....  .  ..+.+--.--++ .++++.      .+|.|..+|..+|+.+..+..-..               
T Consensus       139 TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~  217 (527)
T TIGR03075       139 TGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGE  217 (527)
T ss_pred             CCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccc
Confidence            99987665421  1  111111111133 455443      268999999999988766532111               


Q ss_pred             ----------------Ce-EEEEeeCC-CeEEEEe-C----CC-----------cEEEEecCCCeee-EEecCCC-----
Q 010296          306 ----------------EV-LTIDCLRK-ERVLTVG-R----DR-----------SMQLWKVPEESRL-VFRAPAS-----  345 (513)
Q Consensus       306 ----------------~v-~~~~~~~~-~~~~~~~-~----d~-----------~i~iwd~~~~~~~-~~~~~~~-----  345 (513)
                                      .+ ..+++.+. +.++.+. .    .+           +|.-.|+++++.. .++....     
T Consensus       218 ~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~  297 (527)
T TIGR03075       218 PGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDY  297 (527)
T ss_pred             cccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccc
Confidence                            11 12234443 3333332 1    11           5666777887766 2222111     


Q ss_pred             ----CeeEEEeecCCe----EEEEeCCCCEEEEecCCCCeeEE
Q 010296          346 ----SLECCCFISNDE----FLSGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       346 ----~v~~~~~~~~~~----~~~~~~dg~i~iwd~~~~~~~~~  380 (513)
                          ...-+.+..+|+    ++.+..+|.+++.|..+++++..
T Consensus       298 d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~  340 (527)
T TIGR03075       298 DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSA  340 (527)
T ss_pred             cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceecc
Confidence                111122223443    56899999999999999998743

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.02  E-value=0.0001  Score=70.92  Aligned_cols=116  Identities=12%  Similarity=0.161  Sum_probs=88.0

Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceee-eccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQ-AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI  297 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  297 (513)
                      |...|.--++...+++++.|+.-|.+++|+-..++... ...+..+.+..+..+++..+++.|+..|.|.++-+......
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            44456666677789999999999999999977665432 22234455667788888888999999999999988764321


Q ss_pred             -----EEe-ecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCC
Q 010296          298 -----STL-FGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPE  334 (513)
Q Consensus       298 -----~~~-~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~  334 (513)
                           ... ..|...|++++|++++ ++++|...|.|..-.+..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                 111 2367899999999998 677999999999888776

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=98.01  E-value=0.0024  Score=60.24  Aligned_cols=84  Identities=15%  Similarity=0.114  Sum_probs=56.0

Q ss_pred             CcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcc--cEEEEEEeec--------------CCCEEEE
Q 010296          421 AYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLV--GFVNSLAFAK--------------SGQFLIA  484 (513)
Q Consensus       421 ~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~--~~v~~v~~sp--------------~~~~l~~  484 (513)
                      ....+.+++.+|.+++.|+...=|.|.|+|+..+ ..+...+.+...  +.+....-..              ...+|+.
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            3455899999999999999877899999999987 444444443211  1111111111              1245666


Q ss_pred             EecCCCcccccccCCCcccce
Q 010296          485 GVGQEPRLGRWGHLPAARNGV  505 (513)
Q Consensus       485 ~~~~dg~v~~W~~~~~~~~~~  505 (513)
                      =...-|.|.||.+..+.|...
T Consensus       385 yaprRg~lEvW~~~~g~Rv~a  405 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVAA  405 (415)
T ss_pred             EeccCCeEEEEecCCCCEEEE
Confidence            558899999999988866543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=0.012  Score=56.02  Aligned_cols=195  Identities=10%  Similarity=0.062  Sum_probs=134.9

Q ss_pred             cEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC---CCcEEEEeCCCCcee
Q 010296          222 HILALAVSSDGRYL-ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---DRTVKIWNAEDRAYI  297 (513)
Q Consensus       222 ~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~  297 (513)
                      .-..+++++.++.+ ++...++.|.+.|..+.........-. ....++++++++.++.+..   ++++.+.|..+.+.+
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            34567888888744 444456899999988777766655322 6678999999988886655   689999999998888


Q ss_pred             EEeecccCCeEEEEeeCCCeEE-E-EeCCCcEEEEecCCCeeeE-----EecCCCCeeEEEeecCCe--EEEEeCC--CC
Q 010296          298 STLFGHQSEVLTIDCLRKERVL-T-VGRDRSMQLWKVPEESRLV-----FRAPASSLECCCFISNDE--FLSGSDD--GS  366 (513)
Q Consensus       298 ~~~~~~~~~v~~~~~~~~~~~~-~-~~~d~~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~--~~~~~~d--g~  366 (513)
                      ........+ ..+++.|++..+ + -..++.|.+++........     ..........+.+.+++.  +++...+  +.
T Consensus       154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            775433334 889999988644 3 3368999999977665543     122334456678888886  3333333  68


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCc
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGS  445 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~  445 (513)
                      +...|..++.........                                   ... ....+.++|+|+++.+.. ..+.
T Consensus       233 v~~id~~~~~v~~~~~~~-----------------------------------~~~-~~~~v~~~p~g~~~yv~~~~~~~  276 (381)
T COG3391         233 VLKIDTATGNVTATDLPV-----------------------------------GSG-APRGVAVDPAGKAAYVANSQGGT  276 (381)
T ss_pred             EEEEeCCCceEEEecccc-----------------------------------ccC-CCCceeECCCCCEEEEEecCCCe
Confidence            888888887665542111                                   111 255688999999888874 4478


Q ss_pred             EEEEEeCCC
Q 010296          446 VRLWAIESE  454 (513)
Q Consensus       446 v~vwd~~~~  454 (513)
                      |.+-|..+.
T Consensus       277 V~vid~~~~  285 (381)
T COG3391         277 VSVIDGATD  285 (381)
T ss_pred             EEEEeCCCC
Confidence            888888775

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.98  E-value=2.6e-06  Score=80.53  Aligned_cols=199  Identities=17%  Similarity=0.164  Sum_probs=129.7

Q ss_pred             cCCCeEEEEECCCC--CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCE
Q 010296          158 HRQSVTAVALSEDD--SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRY  234 (513)
Q Consensus       158 h~~~V~~~~~s~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~  234 (513)
                      -...+.|+++.-+.  ..++.|..+|.|.+-.+....-.                 ......+|...+++++|++ |.++
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~  117 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH  117 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence            34567777766543  46778999999998877643321                 0112457788899999998 5677


Q ss_pred             EEEEe----CCCcEEEEeCCCc--cee--eeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296          235 LASGG----LDRHIHLWDTRIQ--EHI--QAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS  305 (513)
Q Consensus       235 l~s~~----~dg~i~vwd~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  305 (513)
                      ||.|-    .+..+.|||+.++  .+.  ..|.+ ......+++|..+.+.+++|.....+.++|++.... ....-.+.
T Consensus       118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk  196 (783)
T KOG1008|consen  118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTK  196 (783)
T ss_pred             HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhh
Confidence            87774    3567999999877  221  11222 334566899998889999999999999999984321 11111333


Q ss_pred             CeEEEEeeC-CCeEEEEeCCCcEEEEec-CCCe-eeEE-----ecCCCCeeEEEeecCC--eEEEEe-CCCCEEEEecCC
Q 010296          306 EVLTIDCLR-KERVLTVGRDRSMQLWKV-PEES-RLVF-----RAPASSLECCCFISND--EFLSGS-DDGSIELWSLLR  374 (513)
Q Consensus       306 ~v~~~~~~~-~~~~~~~~~d~~i~iwd~-~~~~-~~~~-----~~~~~~v~~~~~~~~~--~~~~~~-~dg~i~iwd~~~  374 (513)
                      .+..+...| ....++...++.|.+||. +.-. .+..     ......+..++|.|..  .+++.. ..++|++|++..
T Consensus       197 ~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  197 YVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             hcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            456666777 556666677999999993 3221 1111     1112357889998864  455444 457899998753

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.97  E-value=0.0013  Score=62.84  Aligned_cols=156  Identities=16%  Similarity=0.138  Sum_probs=94.1

Q ss_pred             cccEEEEEEcCCCCEEEEEe---CC-CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCc--EEEEeCC
Q 010296          220 SKHILALAVSSDGRYLASGG---LD-RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRT--VKIWNAE  292 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~---~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~  292 (513)
                      ...+..-+|+|++..++..+   .. ..+.++++.+++....+. ..+.-..-+|+|+|+.|+ +...||.  |+++|+.
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            44566778999888765442   22 469999999887554443 233345578999999877 4455664  6667887


Q ss_pred             CCceeEEeecccCCeEEEEeeCCCeEE--EEeCCCc--EEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCCC
Q 010296          293 DRAYISTLFGHQSEVLTIDCLRKERVL--TVGRDRS--MQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDGS  366 (513)
Q Consensus       293 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~  366 (513)
                      ++. +..+....+.-..-.|+|+|+.+  +.+..|.  |.++++..............-..-.++|+|. ++ .....|.
T Consensus       271 ~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~  349 (425)
T COG0823         271 GKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ  349 (425)
T ss_pred             CCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCc
Confidence            766 33354344444466789998543  4444554  5556666555443333333333678899996 33 2323455


Q ss_pred             --EEEEecCCCCe
Q 010296          367 --IELWSLLRKKP  377 (513)
Q Consensus       367 --i~iwd~~~~~~  377 (513)
                        |.+.++.++..
T Consensus       350 ~~i~~~~~~~~~~  362 (425)
T COG0823         350 WDIDKNDLASGGK  362 (425)
T ss_pred             eeeEEeccCCCCc
Confidence              56666655543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=0.00043  Score=64.68  Aligned_cols=142  Identities=8%  Similarity=0.103  Sum_probs=104.3

Q ss_pred             CCCE-EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-------EEEEeCCCcEEEEeCCCCce--eEEe
Q 010296          231 DGRY-LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-------LFSGSFDRTVKIWNAEDRAY--ISTL  300 (513)
Q Consensus       231 ~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~dg~i~iwd~~~~~~--~~~~  300 (513)
                      +.++ |.++.....++-.|++.|+.+..+.-+.. |+-+.+.|+.+.       -+.|-.+..|.-||.+-...  +...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            3444 44555667789999999999999987765 777788776532       34566788999999874222  2222


Q ss_pred             ecc----cCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCee-eEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecC
Q 010296          301 FGH----QSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESR-LVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLL  373 (513)
Q Consensus       301 ~~~----~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~  373 (513)
                      .+|    .....|++...+|.+++++.+|.|++||--.... ..+.+...+|..+..+.+|..+.|..+..+.+.++.
T Consensus       423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             eccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            222    3456778888899999999999999999733222 256677889999999999998888888888888764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.94  E-value=0.0019  Score=60.13  Aligned_cols=174  Identities=11%  Similarity=0.147  Sum_probs=109.5

Q ss_pred             cEEEEeCCCCceeEEeeccc-CCeEEEEe---eCC----C-eEEEEeC---------C-CcEEEEecCCC-----eee--
Q 010296          285 TVKIWNAEDRAYISTLFGHQ-SEVLTIDC---LRK----E-RVLTVGR---------D-RSMQLWKVPEE-----SRL--  338 (513)
Q Consensus       285 ~i~iwd~~~~~~~~~~~~~~-~~v~~~~~---~~~----~-~~~~~~~---------d-~~i~iwd~~~~-----~~~--  338 (513)
                      .|++.|..+.+.+..+.-.. ..+.+++.   ..+    . .+++|..         . |.|.++++...     +..  
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            57888888777765553222 23444432   221    2 3444432         2 88999999884     222  


Q ss_pred             EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcC
Q 010296          339 VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYH  417 (513)
Q Consensus       339 ~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  417 (513)
                      ......++|.+++.. +++++++ ..+.|.+|++...+ .........+                               
T Consensus        83 ~~~~~~g~V~ai~~~-~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~-------------------------------  129 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSP-------------------------------  129 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BS-------------------------------
T ss_pred             EEEeecCcceEhhhh-CCEEEEe-ecCEEEEEEccCcccchhhheecce-------------------------------
Confidence            233446778888777 5554444 46889999998887 4333322111                               


Q ss_pred             CCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          418 SSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       418 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                           ..++++...  +++|++|..-..|.++.+......+..+..-.....++++.|-+++..++++ ..+|.|.++..
T Consensus       130 -----~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~-D~~gnl~~l~~  201 (321)
T PF03178_consen  130 -----FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG-DKDGNLFVLRY  201 (321)
T ss_dssp             -----SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE-ETTSEEEEEEE
T ss_pred             -----EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE-cCCCeEEEEEE
Confidence                 126666665  4599999988889999877654445556554456779999999777766666 89999999987


Q ss_pred             CC
Q 010296          498 LP  499 (513)
Q Consensus       498 ~~  499 (513)
                      .+
T Consensus       202 ~~  203 (321)
T PF03178_consen  202 NP  203 (321)
T ss_dssp             -S
T ss_pred             CC
Confidence            64

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.93  E-value=0.0015  Score=48.31  Aligned_cols=100  Identities=18%  Similarity=0.319  Sum_probs=71.2

Q ss_pred             eEEEEEec---CC-CeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEE
Q 010296          265 VSCLTFRQ---GT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF  340 (513)
Q Consensus       265 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~  340 (513)
                      |++|++..   +| +.|++|+.|..|++|+-  ...+..+. ....|.++.....++|+.+-.+|+|-+|+-..  .+..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeee
Confidence            66777754   22 57999999999999984  35566665 56778888888889999999999999997532  2222


Q ss_pred             ecCCCCeeEEEeec-C--C--eEEEEeCCCCEEE
Q 010296          341 RAPASSLECCCFIS-N--D--EFLSGSDDGSIEL  369 (513)
Q Consensus       341 ~~~~~~v~~~~~~~-~--~--~~~~~~~dg~i~i  369 (513)
                      ......+.++.+.. +  |  .|++|-.+|.|-+
T Consensus        77 iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   77 IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            22333466665544 2  3  3999999998753

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.89  E-value=0.011  Score=56.72  Aligned_cols=182  Identities=9%  Similarity=0.060  Sum_probs=101.9

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEe--CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSAS--KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      .|..--.+|..++|......++|.-  ..|.+++=|-                          ...+.-..|..+.|.|-
T Consensus        14 aL~qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds--------------------------~viGqFEhV~GlsW~P~   67 (671)
T PF15390_consen   14 ALHQAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS--------------------------KVIGQFEHVHGLSWAPP   67 (671)
T ss_pred             HHHhhhccccceEecCCCEEEEEeeeeeCCccccCCc--------------------------cEeeccceeeeeeecCc
Confidence            3444456899999985444444542  2333322111                          11234456999999994


Q ss_pred             ----CCEEEEEeCCCcEEEEeCC-----CcceeeeccCc---CC--CeEEEEEecCCCeEEEEeCCCcEEEEeCCCC--c
Q 010296          232 ----GRYLASGGLDRHIHLWDTR-----IQEHIQAFPGH---RG--PVSCLTFRQGTSELFSGSFDRTVKIWNAEDR--A  295 (513)
Q Consensus       232 ----~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~---~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~  295 (513)
                          ...|++......|.||.+.     .++.+.....+   .-  --..+.|+|....|++-.....-.+++++..  +
T Consensus        68 ~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr  147 (671)
T PF15390_consen   68 CTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR  147 (671)
T ss_pred             ccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce
Confidence                3345555567899999875     22222221111   11  1235689998887776555444445665532  2


Q ss_pred             eeEEeecccCCeEEEEeeCCC-eEE-EEeCCCcEEEEecCCCeee-----EEecCCCCeeEEEeecCCeEEEEe
Q 010296          296 YISTLFGHQSEVLTIDCLRKE-RVL-TVGRDRSMQLWKVPEESRL-----VFRAPASSLECCCFISNDEFLSGS  362 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~~-~~~-~~~~d~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~  362 (513)
                      ....+ ...+.|.|.+|.+|| +++ +.++.=.-++||-......     ....-.+.|.++...-+..++++.
T Consensus       148 VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsqVAvaT  220 (671)
T PF15390_consen  148 VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQVAVAT  220 (671)
T ss_pred             EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccceEEEEe
Confidence            22333 467889999999988 444 5556666788886543221     222334455555555555555544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.024  Score=54.01  Aligned_cols=243  Identities=7%  Similarity=0.009  Sum_probs=148.7

Q ss_pred             cEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEE
Q 010296          222 HILALAVSSDGRYLASGG-LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYIST  299 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~  299 (513)
                      ....+...+++..+.... ....+.+.+................-..+++++.+..++ +...+..|.+.|..+......
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            355677788875444433 222455555442222222221213445778888888555 444568999999888777666


Q ss_pred             eecccCCeEEEEeeCCC-eEEEEeC---CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecC
Q 010296          300 LFGHQSEVLTIDCLRKE-RVLTVGR---DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLL  373 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~~~-~~~~~~~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~  373 (513)
                      ..... ....+++.+++ .+.++..   ++++.+.|..+...............+++.|+|.  +++-..++.|.+.+..
T Consensus       112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~  190 (381)
T COG3391         112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTS  190 (381)
T ss_pred             eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence            54322 56788888877 4444443   6889999988887765433322338899999996  3355578999999966


Q ss_pred             CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---CcEEEEE
Q 010296          374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---GSVRLWA  450 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~v~vwd  450 (513)
                      ...... -.....                                .........+.++|+|.+++.....   +.+...|
T Consensus       191 ~~~v~~-~~~~~~--------------------------------~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id  237 (381)
T COG3391         191 GNSVVR-GSVGSL--------------------------------VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID  237 (381)
T ss_pred             Ccceec-cccccc--------------------------------cccCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence            654442 110000                                0111125678899999876665433   5888888


Q ss_pred             eCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          451 IESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      ..++. ........... ....+.++|+|.++.+.....+.|.+-+....
T Consensus       238 ~~~~~-v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         238 TATGN-VTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             CCCce-EEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            87762 11111111112 45678999999999988666677777765543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.87  E-value=0.015  Score=50.96  Aligned_cols=201  Identities=10%  Similarity=0.057  Sum_probs=113.6

Q ss_pred             CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCcceeeeccCc-CCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296          218 KQSKHILALAVSSDGR-YLASGGLDRHIHLWDTRIQEHIQAFPGH-RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      +-...+..|+|.|+.+ ++++....+.|..++. .|+.+..+.-. .+....|++..++.++++.-.++.+.++++....
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            3344599999999755 5666667788888886 47877776543 3568899999888777777678999999884321


Q ss_pred             ------eeEEee-----cccCCeEEEEeeCC-CeEEEEeCCCcEEEEecCC---CeeeE---------EecCCCCeeEEE
Q 010296          296 ------YISTLF-----GHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPE---ESRLV---------FRAPASSLECCC  351 (513)
Q Consensus       296 ------~~~~~~-----~~~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~---~~~~~---------~~~~~~~v~~~~  351 (513)
                            .+..+.     .+...+-.++|.+. ++|+++-...-..+|.+..   .....         .......+..++
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~  177 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS  177 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence                  111221     23445889999995 5788777766666776654   11111         011234567888


Q ss_pred             eecCC-e-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEE
Q 010296          352 FISND-E-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVT  429 (513)
Q Consensus       352 ~~~~~-~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~  429 (513)
                      +.|.. . ++.+.....|.++| .+|+++..+........-                            .......-.|+
T Consensus       178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl----------------------------~~~~~QpEGIa  228 (248)
T PF06977_consen  178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL----------------------------SKDIPQPEGIA  228 (248)
T ss_dssp             EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-----------------------------SS---SEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc----------------------------ccccCCccEEE
Confidence            88864 4 66777888899999 778877776643321000                            01112267899


Q ss_pred             EecCCCEEEEecCCCcEEEE
Q 010296          430 VCGGSDLAASGAGNGSVRLW  449 (513)
Q Consensus       430 ~s~~~~~l~~g~~dg~v~vw  449 (513)
                      |.++|++.+++ .-+..++|
T Consensus       229 ~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  229 FDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             E-TT--EEEEE-TTTEEEEE
T ss_pred             ECCCCCEEEEc-CCceEEEe
Confidence            99999655554 55555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.87  E-value=0.0073  Score=52.25  Aligned_cols=204  Identities=14%  Similarity=0.084  Sum_probs=117.6

Q ss_pred             eEEEEECCCCC-eEEEEeCCce-EEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          162 VTAVALSEDDS-KGFSASKDGS-ILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       162 V~~~~~s~~~~-~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      -..|+|+|... -++.+-.-|+ ..++|......+.++...           ....+.+|.      .|||+|.+|...-
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-----------~~RHfyGHG------vfs~dG~~LYATE  132 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-----------EGRHFYGHG------VFSPDGRLLYATE  132 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-----------cCceeeccc------ccCCCCcEEEeec
Confidence            34577777544 3445555555 567888877766544111           112344553      6999999988764


Q ss_pred             C-----CCcEEEEeCCCc-ceeeeccCcCCCeEEEEEecCCCeEEEEeC------------------CCcEEEEeCCCCc
Q 010296          240 L-----DRHIHLWDTRIQ-EHIQAFPGHRGPVSCLTFRQGTSELFSGSF------------------DRTVKIWNAEDRA  295 (513)
Q Consensus       240 ~-----dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~  295 (513)
                      .     .|.|-|||...+ +.+..+..|.-....+.|.+||+.|+.+..                  .-++.+.|..++.
T Consensus       133 ndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~  212 (366)
T COG3490         133 NDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGN  212 (366)
T ss_pred             CCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccc
Confidence            3     378999998754 456677888888889999999999887642                  0123333434444


Q ss_pred             eeEEe--e--cccCCeEEEEeeCCCeEEEEeC-CC-----cEEEEecCCCeeeEEec--------CCCCeeEEEeecCC-
Q 010296          296 YISTL--F--GHQSEVLTIDCLRKERVLTVGR-DR-----SMQLWKVPEESRLVFRA--------PASSLECCCFISND-  356 (513)
Q Consensus       296 ~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~-d~-----~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~-  356 (513)
                      .+.+.  .  .+...|..++.-++++++.++. .|     --.+=-...+..+.+..        ....|-+++.+... 
T Consensus       213 liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g  292 (366)
T COG3490         213 LIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG  292 (366)
T ss_pred             hhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC
Confidence            43321  1  2344567777777777776652 11     01111111111111111        12345566666444 


Q ss_pred             eEE-EEeCCCCEEEEecCCCCeeEEee
Q 010296          357 EFL-SGSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       357 ~~~-~~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      .++ ++-..+...+||..++..+....
T Consensus       293 lV~lTSP~GN~~vi~da~tG~vv~~a~  319 (366)
T COG3490         293 LVALTSPRGNRAVIWDAATGAVVSEAA  319 (366)
T ss_pred             eEEEecCCCCeEEEEEcCCCcEEeccc
Confidence            333 44455677899999998776543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.87  E-value=0.0015  Score=65.21  Aligned_cols=183  Identities=12%  Similarity=0.079  Sum_probs=103.4

Q ss_pred             CCCeEEEEECCCCCeEEEEe------CCc--eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          159 RQSVTAVALSEDDSKGFSAS------KDG--SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ...+...+++|+|..++...      .|+  .|.+++.  +.....+                  ..  ....+.-.|+|
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~l------------------t~--g~~~t~PsWsp  406 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQV------------------LE--GHSLTRPSWSL  406 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceee------------------ec--CCCCCCceECC
Confidence            34678999999999887554      244  4444453  2211211                  01  12367788999


Q ss_pred             CCCEEEEEeCC------------CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEE---EeCCCCc
Q 010296          231 DGRYLASGGLD------------RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKI---WNAEDRA  295 (513)
Q Consensus       231 ~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~  295 (513)
                      +|..|++....            +.+.+..+..+....   ...+.|..+.|+|||.+|+... ++.|++   -....+.
T Consensus       407 DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~  482 (591)
T PRK13616        407 DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ  482 (591)
T ss_pred             CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence            98877776532            233333444333322   2356799999999999988665 477777   4433443


Q ss_pred             e-e---EEee-cccCCeEEEEeeCCCeEEEEeCCCcEEEEec--CCCeeeEEec--CCCCeeEEEeecCCeEEEEeCCCC
Q 010296          296 Y-I---STLF-GHQSEVLTIDCLRKERVLTVGRDRSMQLWKV--PEESRLVFRA--PASSLECCCFISNDEFLSGSDDGS  366 (513)
Q Consensus       296 ~-~---~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~--~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~dg~  366 (513)
                      . +   ..+. .....+.++.|.+++.|+++..++...+|.+  ..........  ...++..++-++ +.++....+|.
T Consensus       483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~-~~iyv~~~~g~  561 (591)
T PRK13616        483 YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP-STVYVTDARAV  561 (591)
T ss_pred             eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC-ceEEEEcCCce
Confidence            1 1   1122 2233468899999998887666554445544  3222211111  244566666665 34555555554


Q ss_pred             EE
Q 010296          367 IE  368 (513)
Q Consensus       367 i~  368 (513)
                      +.
T Consensus       562 ~~  563 (591)
T PRK13616        562 LQ  563 (591)
T ss_pred             EE
Confidence            33

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.86  E-value=0.012  Score=54.94  Aligned_cols=70  Identities=13%  Similarity=0.164  Sum_probs=43.6

Q ss_pred             ceEEEEEEec-------CCCEEEEecCCCcEEEEEeCCCCcceeeeeec-CcccEEEEEEeecCCCEEEEEecCCCccc
Q 010296          423 SWVSSVTVCG-------GSDLAASGAGNGSVRLWAIESETKDIQPLYNL-PLVGFVNSLAFAKSGQFLIAGVGQEPRLG  493 (513)
Q Consensus       423 ~~i~~~~~s~-------~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~~dg~v~  493 (513)
                      ..++.+.|-.       .|.+|++.-..+.|....+............+ .....+..|++.|||.++++. ..+|.|.
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~-d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD-DSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE--TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE-CCCCeEe
Confidence            4477777764       34567776667788888887553322222212 234489999999999988888 6777763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.86  E-value=0.018  Score=52.49  Aligned_cols=194  Identities=10%  Similarity=0.034  Sum_probs=116.1

Q ss_pred             EECCCCCeE-EEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 010296          166 ALSEDDSKG-FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHI  244 (513)
Q Consensus       166 ~~s~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  244 (513)
                      .|.++...| .+--..+.|.-|+..++.....                     .+...+.++..-..+..|+++.  .-+
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~---------------------~~p~~~~~~~~~d~~g~Lv~~~--~g~   87 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVF---------------------PSPGGFSSGALIDAGGRLIACE--HGV   87 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEE---------------------ECCCCcccceeecCCCeEEEEc--ccc
Confidence            466666644 4555678888888876643321                     2233345555544555555554  236


Q ss_pred             EEEeCCCcceeeeccC-----cCCCeEEEEEecCCCeEEEEeC-----------CCcEEEEeCCCCceeEEeecccCCeE
Q 010296          245 HLWDTRIQEHIQAFPG-----HRGPVSCLTFRQGTSELFSGSF-----------DRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       245 ~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      .++++.++..+..+..     .....+.+...|+|.+.++...           -|.|+.++. .+..+..+..+-...+
T Consensus        88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~N  166 (307)
T COG3386          88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPN  166 (307)
T ss_pred             EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecC
Confidence            6777665555322211     2245667888899887664433           133444444 4555666665566678


Q ss_pred             EEEeeCCCe-EEEEe-CCCcEEEEecCC------Ce--eeEEecCCCCeeEEEeecCCeEE-EEeCCC-CEEEEecCCCC
Q 010296          309 TIDCLRKER-VLTVG-RDRSMQLWKVPE------ES--RLVFRAPASSLECCCFISNDEFL-SGSDDG-SIELWSLLRKK  376 (513)
Q Consensus       309 ~~~~~~~~~-~~~~~-~d~~i~iwd~~~------~~--~~~~~~~~~~v~~~~~~~~~~~~-~~~~dg-~i~iwd~~~~~  376 (513)
                      .|+|+|+++ ++.+. ..+.|..|++..      +.  ...+.......-.++...+|.+. ++...| .|.+|+.. ++
T Consensus       167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~  245 (307)
T COG3386         167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK  245 (307)
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc
Confidence            999999994 44444 357888887752      11  11222334556677777888766 444443 89999988 88


Q ss_pred             eeEEeecC
Q 010296          377 PVYIVKNA  384 (513)
Q Consensus       377 ~~~~~~~~  384 (513)
                      .+..+...
T Consensus       246 l~~~i~lP  253 (307)
T COG3386         246 LLGEIKLP  253 (307)
T ss_pred             EEEEEECC
Confidence            88888754

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.83  E-value=0.0017  Score=62.05  Aligned_cols=202  Identities=13%  Similarity=0.058  Sum_probs=117.4

Q ss_pred             EEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe---CC-CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE
Q 010296          244 IHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS---FD-RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL  319 (513)
Q Consensus       244 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  319 (513)
                      +.+-|.. +.....+......+..-+|+|++..++..+   .. ..+.++++.+++....+. ..+.-....|+|+|+.+
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l  252 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence            4444433 444444544555677778999988765432   22 469999999887655443 44445567899998543


Q ss_pred             --EEeCCCc--EEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCCC--EEEEecCCCCeeEEeecCCCcccCC
Q 010296          320 --TVGRDRS--MQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDGS--IELWSLLRKKPVYIVKNAHPLLDGL  391 (513)
Q Consensus       320 --~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~  391 (513)
                        +...++.  |+++|+.+.....+......-..-.|+|+|. ++ +.+..|.  |.++++...... .+......    
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~----  327 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGG----  327 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCC----
Confidence              4555655  6666777666444333333333567899996 33 5555565  444455554442 22211100    


Q ss_pred             CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC-Cc--EEEEEeCCCCcceeeeeecCccc
Q 010296          392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN-GS--VRLWAIESETKDIQPLYNLPLVG  468 (513)
Q Consensus       392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-g~--v~vwd~~~~~~~~~~~~~~~~~~  468 (513)
                                                       -..-.|+|+|++|+..+.. |.  |.+.++.++.. ++.+.   ...
T Consensus       328 ---------------------------------~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt---~~~  370 (425)
T COG0823         328 ---------------------------------NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILT---STY  370 (425)
T ss_pred             ---------------------------------CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcc---ccc
Confidence                                             1156789999998877643 44  67777766632 33332   333


Q ss_pred             EEEEEEeecCCCEEEEEecCC
Q 010296          469 FVNSLAFAKSGQFLIAGVGQE  489 (513)
Q Consensus       469 ~v~~v~~sp~~~~l~~~~~~d  489 (513)
                      ....-.|.|+|+++....+.-
T Consensus       371 ~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         371 LNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             cCCCCCcCCCCceEEEeccCC
Confidence            344567888888877664443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.83  E-value=0.023  Score=51.63  Aligned_cols=229  Identities=13%  Similarity=0.110  Sum_probs=128.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCC-CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE----------
Q 010296          231 DGRYLASGGLDRHIHLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST----------  299 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------  299 (513)
                      .++.|+.|+.+| ++++++. ........  +...|..+...+.-+.|++-+ |+.|+++++........          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            577899999888 9999983 23333322  233499999999877766664 59999999876443331          


Q ss_pred             ----eecccCCeEEEE---eeCCCeEEEEeCCCcEEEEecCCC-----eeeEEecCCCCeeEEEeecCCeEEEEeCCCCE
Q 010296          300 ----LFGHQSEVLTID---CLRKERVLTVGRDRSMQLWKVPEE-----SRLVFRAPASSLECCCFISNDEFLSGSDDGSI  367 (513)
Q Consensus       300 ----~~~~~~~v~~~~---~~~~~~~~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i  367 (513)
                          .......+..++   -......+++.....|.+|.....     ...........+..++|. .+.++.|.. ...
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~-~~~i~v~~~-~~f  159 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL-GNKICVGTS-KGF  159 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe-CCEEEEEeC-Cce
Confidence                111222344444   112345666666779998887653     233334455778888888 335555554 448


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR  447 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~  447 (513)
                      .+.|+.++.....+.......   .                      .........++..+... ++.+|++-  +..-.
T Consensus       160 ~~idl~~~~~~~l~~~~~~~~---~----------------------~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~  211 (275)
T PF00780_consen  160 YLIDLNTGSPSELLDPSDSSS---S----------------------FKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGV  211 (275)
T ss_pred             EEEecCCCCceEEeCccCCcc---h----------------------hhhcccCCCceEEEEeC-CceEEEEe--cceEE
Confidence            888999776655443221110   0                      00001111224444443 34566653  33334


Q ss_pred             EEEeCCCCcce-eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          448 LWAIESETKDI-QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       448 vwd~~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      +.+.... ... ..+.   -...+.++++  ..+||++. +.+ .|.+|++.++.
T Consensus       212 fv~~~G~-~~r~~~i~---W~~~p~~~~~--~~pyli~~-~~~-~iEV~~~~~~~  258 (275)
T PF00780_consen  212 FVNKNGE-PSRKSTIQ---WSSAPQSVAY--SSPYLIAF-SSN-SIEVRSLETGE  258 (275)
T ss_pred             EEcCCCC-cCcccEEE---cCCchhEEEE--ECCEEEEE-CCC-EEEEEECcCCc
Confidence            4444332 111 1121   1334566666  44688877 554 59999988774

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00012  Score=69.66  Aligned_cols=94  Identities=14%  Similarity=0.159  Sum_probs=79.3

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeE-EEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVS-CLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      ...|.-+.|+|.-.++|.+..+|.|.++.+. .+.+.+++.|...++ +++|.|+|+.|+.|-.||+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4458889999999999999999999999988 777888887777777 99999999999999999999999999988776


Q ss_pred             Ee-ecccCCeEEEEeeC
Q 010296          299 TL-FGHQSEVLTIDCLR  314 (513)
Q Consensus       299 ~~-~~~~~~v~~~~~~~  314 (513)
                      .. ......|.++.|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            53 22445677777753

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.79  E-value=0.0093  Score=56.38  Aligned_cols=67  Identities=10%  Similarity=0.113  Sum_probs=48.6

Q ss_pred             cCCCCEEEEEe---------CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee
Q 010296          229 SSDGRYLASGG---------LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI  297 (513)
Q Consensus       229 s~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  297 (513)
                      |||+++++...         ..+.+.|||+.+++....... ...+....|+|+|+.++... ++.|+++++.++...
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence            57787777632         246789999998776554443 67788999999999988775 578999998777443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.79  E-value=0.042  Score=53.41  Aligned_cols=242  Identities=14%  Similarity=0.163  Sum_probs=127.5

Q ss_pred             cEEEEEEcCCCCEEEEE-eCC----CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC-----------c
Q 010296          222 HILALAVSSDGRYLASG-GLD----RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR-----------T  285 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~-~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~  285 (513)
                      .+..+.+||+|++||.+ +..    ..|+++|+.+++.+...-... ....+.|.++++.|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            45578999999998865 333    359999999997765321111 223499999988877554333           3


Q ss_pred             EEEEeCCCCcee--EEeecccCC--eEEEEeeCCCeEEE--EeC--C-CcEEEEecCCC-----eeeEEecCCCCeeEEE
Q 010296          286 VKIWNAEDRAYI--STLFGHQSE--VLTIDCLRKERVLT--VGR--D-RSMQLWKVPEE-----SRLVFRAPASSLECCC  351 (513)
Q Consensus       286 i~iwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~~--~~~--d-~~i~iwd~~~~-----~~~~~~~~~~~v~~~~  351 (513)
                      |+.|.+.+...-  ..+......  ...+..+++++++.  ...  + ..+++.++...     ....+......+....
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            888888876432  333333333  56777888886542  332  3 45777887764     2333333333443333


Q ss_pred             eecCCeEEEEe----CCCCEEEEecCCCCe---eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296          352 FISNDEFLSGS----DDGSIELWSLLRKKP---VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW  424 (513)
Q Consensus       352 ~~~~~~~~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  424 (513)
                      -..++.|..-+    ..+.|...++.....   ...+...                                   .....
T Consensus       284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~-----------------------------------~~~~~  328 (414)
T PF02897_consen  284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE-----------------------------------DEDVS  328 (414)
T ss_dssp             EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-------------------------------------SSSEE
T ss_pred             EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC-----------------------------------CCcee
Confidence            33355433222    234555556555442   1111110                                   01112


Q ss_pred             EEEEEEecCCCEEEEecCCC--cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE---ecCCCcccccccCC
Q 010296          425 VSSVTVCGGSDLAASGAGNG--SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG---VGQEPRLGRWGHLP  499 (513)
Q Consensus       425 i~~~~~s~~~~~l~~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~---~~~dg~v~~W~~~~  499 (513)
                      +..+....+ .+++....++  .|+++++..+ .....+ ..+..+.|..+...+++..+...   .-.-++|..||+.+
T Consensus       329 l~~~~~~~~-~Lvl~~~~~~~~~l~v~~~~~~-~~~~~~-~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t  405 (414)
T PF02897_consen  329 LEDVSLFKD-YLVLSYRENGSSRLRVYDLDDG-KESREI-PLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT  405 (414)
T ss_dssp             EEEEEEETT-EEEEEEEETTEEEEEEEETT-T-EEEEEE-ESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEEEECC-EEEEEEEECCccEEEEEECCCC-cEEeee-cCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            555554432 3444444444  5888888722 222222 23346667777777776654432   22336777777776


Q ss_pred             Ccc
Q 010296          500 AAR  502 (513)
Q Consensus       500 ~~~  502 (513)
                      +..
T Consensus       406 ~~~  408 (414)
T PF02897_consen  406 GEL  408 (414)
T ss_dssp             TCE
T ss_pred             CCE
Confidence            653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.78  E-value=0.031  Score=55.61  Aligned_cols=151  Identities=13%  Similarity=0.117  Sum_probs=87.5

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe------CCCcEE
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG------LDRHIH  245 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~  245 (513)
                      ..++.++.++.|.-.|..+++.+.......     .          .....+++--.--++ .++++.      .+|.|.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~-----~----------~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~  184 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGD-----Y----------KAGYTITAAPLVVKG-KVITGISGGEFGVRGYVT  184 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeeccccc-----c----------cccccccCCcEEECC-EEEEeecccccCCCcEEE
Confidence            457778889999999999999876431100     0          000011110000134 444443      268899


Q ss_pred             EEeCCCcceeeeccCc-------------------------------CCCeE-EEEEecCCCeEEEEeCC-----C----
Q 010296          246 LWDTRIQEHIQAFPGH-------------------------------RGPVS-CLTFRQGTSELFSGSFD-----R----  284 (513)
Q Consensus       246 vwd~~~~~~~~~~~~~-------------------------------~~~v~-~~~~~~~~~~l~~~~~d-----g----  284 (513)
                      .+|..+|+.+-.+..-                               .+.++ .+++.+...+|+.+..+     +    
T Consensus       185 AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~  264 (527)
T TIGR03075       185 AYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRP  264 (527)
T ss_pred             EEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCC
Confidence            9999999876554321                               01121 34666666666655421     2    


Q ss_pred             -------cEEEEeCCCCceeEEeecccCCeEE---------EEeeCCCe---E-EEEeCCCcEEEEecCCCeee
Q 010296          285 -------TVKIWNAEDRAYISTLFGHQSEVLT---------IDCLRKER---V-LTVGRDRSMQLWKVPEESRL  338 (513)
Q Consensus       285 -------~i~iwd~~~~~~~~~~~~~~~~v~~---------~~~~~~~~---~-~~~~~d~~i~iwd~~~~~~~  338 (513)
                             .|.-.|++||+....++.....+..         +....+++   + +.+..+|.++++|..+++.+
T Consensus       265 gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       265 GDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence                   6778899999988776543332222         22222443   4 47788999999999988764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.76  E-value=0.0033  Score=46.50  Aligned_cols=99  Identities=15%  Similarity=0.221  Sum_probs=70.2

Q ss_pred             EEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296          223 ILALAVSS---DG-RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       223 v~~~~~s~---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      |++|++..   +| +.|++|+.|..|++|+-  ...+..+. -...|++++-... ..++.+..+|+|-+|+-  ...+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            66677665   32 58999999999999973  46666666 4567888877765 66889999999999985  33455


Q ss_pred             EeecccCCeEEEEeeC-C--C--eEEEEeCCCcEE
Q 010296          299 TLFGHQSEVLTIDCLR-K--E--RVLTVGRDRSMQ  328 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~-~--~--~~~~~~~d~~i~  328 (513)
                      .++ ....+.++.+.. +  |  .|++|-.+|.|-
T Consensus        76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            554 334467776654 2  3  577888888764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.00019  Score=68.41  Aligned_cols=96  Identities=15%  Similarity=0.166  Sum_probs=76.3

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE-EEEEcCCCCEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL-ALAVSSDGRYL  235 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l  235 (513)
                      .-...|.-+.|+|...++|++..+|.|.+..+. ...+.++                   ..|...++ +++|.|||+.|
T Consensus        18 ~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-------------------p~p~~~v~~sL~W~~DGkll   77 (665)
T KOG4640|consen   18 SLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-------------------PIPGENVTASLCWRPDGKLL   77 (665)
T ss_pred             ccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-------------------cCCCCccceeeeecCCCCEE
Confidence            345678899999999999999999999998887 5544443                   22444555 99999999999


Q ss_pred             EEEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEEec
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQ  272 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~  272 (513)
                      |+|-.||+|++.|+.++..+..+. .....|.++.|.+
T Consensus        78 aVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   78 AVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            999999999999999998776632 2456778888864

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.74  E-value=0.047  Score=52.52  Aligned_cols=157  Identities=9%  Similarity=-0.016  Sum_probs=79.2

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc------eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQE------HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      +.|.++.|+.+. .|++...+|.+++||+....      .+....-....+....+..+|  ++.-..++.+.+..--..
T Consensus        81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~  157 (410)
T PF04841_consen   81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDE  157 (410)
T ss_pred             CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccc
Confidence            679999999754 56666789999999986333      111111112223333444455  333334455544432221


Q ss_pred             c-eeEEeecccCC---------eEE-EEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEE
Q 010296          295 A-YISTLFGHQSE---------VLT-IDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSG  361 (513)
Q Consensus       295 ~-~~~~~~~~~~~---------v~~-~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~  361 (513)
                      . ....+......         ... ..+..+. ..+....++.+.+.+-.....   .....++..+++||+++ ++.-
T Consensus       158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~  234 (410)
T PF04841_consen  158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALF  234 (410)
T ss_pred             cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEE
Confidence            1 11111100000         000 1122222 233334444555333221111   12346799999999997 5566


Q ss_pred             eCCCCEEEEecCCCCeeEEeec
Q 010296          362 SDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       362 ~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      ..+|.+.|....-.+.+..+..
T Consensus       235 t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  235 TDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             ECCCCEEEEECcccceeEEeec
Confidence            6779999988766666655543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.00099  Score=67.65  Aligned_cols=102  Identities=20%  Similarity=0.357  Sum_probs=76.8

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT  249 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~  249 (513)
                      .+.+++.|+..|.|...|+...-... .                 .-..-..+|++++|+.+|..++.|-.+|.|.+||+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~-~-----------------~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~  159 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPL-H-----------------QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDM  159 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchh-h-----------------cCCccCCcceeeEecCCCceeccccCCCcEEEEEc
Confidence            45678889989999988876542110 0                 11234678999999999999999999999999999


Q ss_pred             CCcceeeeccCcCCCeEEEEE---ecCCCeEEEEeCCCcEEEEeC
Q 010296          250 RIQEHIQAFPGHRGPVSCLTF---RQGTSELFSGSFDRTVKIWNA  291 (513)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~dg~i~iwd~  291 (513)
                      ..+++++.+..|..+.+++-+   ..++..++++...|.  +|.+
T Consensus       160 ~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  160 HRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            999999888877777665543   445567888877776  5554

>smart00320 WD40 WD40 repeats

Probab=97.71  E-value=5.7e-05  Score=44.61  Aligned_cols=36  Identities=44%  Similarity=0.577  Sum_probs=32.3

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEe
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWD  187 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd  187 (513)
                      ...+..|...|+++.|++.+.++++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            445668999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.0013  Score=66.77  Aligned_cols=100  Identities=22%  Similarity=0.342  Sum_probs=74.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCc-ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEE
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQ-EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLT  309 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  309 (513)
                      .+..++.|+..|.+...|+... .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+.+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            3567889998999999887653 111111224679999999999999999999999999999999998888777766665


Q ss_pred             EEee---CCC-eEEEEeCCCcEEEEec
Q 010296          310 IDCL---RKE-RVLTVGRDRSMQLWKV  332 (513)
Q Consensus       310 ~~~~---~~~-~~~~~~~d~~i~iwd~  332 (513)
                      +-+.   .++ .++++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            5443   344 4667777776  5544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.66  E-value=0.038  Score=50.41  Aligned_cols=223  Identities=13%  Similarity=0.046  Sum_probs=124.1

Q ss_pred             EEcCCCCE-EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec---
Q 010296          227 AVSSDGRY-LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG---  302 (513)
Q Consensus       227 ~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---  302 (513)
                      .|.++... +.+--..+.|.-|+..+++.. .+. +...+.++.....+..|+++..  .+.+++..++..+..+..   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            56676664 444445788999998766432 222 2334455555445555665543  356777665555333221   


Q ss_pred             --ccCCeEEEEeeCCCeEEEEeCC------------CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCCC
Q 010296          303 --HQSEVLTIDCLRKERVLTVGRD------------RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDGS  366 (513)
Q Consensus       303 --~~~~v~~~~~~~~~~~~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~  366 (513)
                        .....+.+...|+|.+..+...            |.|+.++...........+-...+.++|+|+++ |. +=+..+.
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~  186 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR  186 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence              1234567788889988876655            335555543233333334455667899999995 33 4455578


Q ss_pred             EEEEecCC--CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC
Q 010296          367 IELWSLLR--KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG  444 (513)
Q Consensus       367 i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg  444 (513)
                      |+-|++..  +..-...    .                            .+......+..-.++...+|.+.+++...|
T Consensus       187 i~r~~~d~~~g~~~~~~----~----------------------------~~~~~~~~G~PDG~~vDadG~lw~~a~~~g  234 (307)
T COG3386         187 IHRYDLDPATGPIGGRR----G----------------------------FVDFDEEPGLPDGMAVDADGNLWVAAVWGG  234 (307)
T ss_pred             EEEEecCcccCccCCcc----e----------------------------EEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence            88887653  1100000    0                            000011122255677778888776555554


Q ss_pred             -cEEEEEeCCCCcceeeeeecCcccEEEEEEee-cCCCEEEEEecCC
Q 010296          445 -SVRLWAIESETKDIQPLYNLPLVGFVNSLAFA-KSGQFLIAGVGQE  489 (513)
Q Consensus       445 -~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~~~~~d  489 (513)
                       .|.+|+.. + +.+..+. .|. ..+++++|- |+.+.|++++...
T Consensus       235 ~~v~~~~pd-G-~l~~~i~-lP~-~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         235 GRVVRFNPD-G-KLLGEIK-LPV-KRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             ceEEEECCC-C-cEEEEEE-CCC-CCCccceEeCCCcCEEEEEecCC
Confidence             89999987 4 3333333 222 567778885 5666666663433

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.62  E-value=0.1  Score=53.27  Aligned_cols=287  Identities=13%  Similarity=0.056  Sum_probs=154.8

Q ss_pred             CCCeEEEEECCCC------CeEEEEeCCceEEEEeC-CCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          159 RQSVTAVALSEDD------SKGFSASKDGSILHWDV-SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       159 ~~~V~~~~~s~~~------~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      ...|.|+.++|-|      ++++.|.++..+.+--. .+...+...               ......-...|.-..|-.+
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~---------------~l~~~~iPRSIl~~~~e~d  594 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE---------------QLSGEIIPRSILLTTFEGD  594 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee---------------ccCCCccchheeeEEeecc
Confidence            5789999999842      37888887766655433 222221110               0001122344666677777


Q ss_pred             CCEEEEEeCCCcEEEEeCC--Ccceeeec--cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296          232 GRYLASGGLDRHIHLWDTR--IQEHIQAF--PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV  307 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~--~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  307 (513)
                      ..+|.++..||.+..|-+.  ++..-..-  .-...++.--.|+..++.-+-+..|.-..+|.-+..-+...+.  -..+
T Consensus       595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls--~kev  672 (1096)
T KOG1897|consen  595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLS--LKEV  672 (1096)
T ss_pred             ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccc--hHHh
Confidence            8899999999998776554  44332211  2234566666777766655555567777777654332222221  1112


Q ss_pred             EEEE-eeCC--CeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeC-----------C---CCE
Q 010296          308 LTID-CLRK--ERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSD-----------D---GSI  367 (513)
Q Consensus       308 ~~~~-~~~~--~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~-----------d---g~i  367 (513)
                      ..++ |+.+  ...++....+.+++..+..-+.+  ...........+++.+... +.+.+.           .   ..+
T Consensus       673 ~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l  752 (1096)
T KOG1897|consen  673 NHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFL  752 (1096)
T ss_pred             hhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEE
Confidence            2222 2222  23444455667777766543332  1123334455666665333 222221           1   135


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC-CCEEEEec-----
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG-SDLAASGA-----  441 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g~-----  441 (513)
                      +++|-++.+.+...+....                                 .....|.++.|..+ +.++++|.     
T Consensus       753 ~vlD~nTf~vl~~hef~~~---------------------------------E~~~Si~s~~~~~d~~t~~vVGT~~v~P  799 (1096)
T KOG1897|consen  753 RVLDQNTFEVLSSHEFERN---------------------------------ETALSIISCKFTDDPNTYYVVGTGLVYP  799 (1096)
T ss_pred             EEecCCceeEEeecccccc---------------------------------ceeeeeeeeeecCCCceEEEEEEEeecc
Confidence            5556555444433322111                                 01111556668777 67777775     


Q ss_pred             -----CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          442 -----GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       442 -----~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                           ..|.|.||.+... ..++.+......+.|.++.. -+|++||.- +.  .|++++....
T Consensus       800 de~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~~-fngkllA~I-n~--~vrLye~t~~  858 (1096)
T KOG1897|consen  800 DENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALVE-FNGKLLAGI-NQ--SVRLYEWTTE  858 (1096)
T ss_pred             CCCCcccceEEEEEEecC-Cceeeeeeeeeccceeehhh-hCCeEEEec-Cc--EEEEEEcccc
Confidence                 3589999999884 55666665555677776654 367777655 44  6666665554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.0014  Score=61.30  Aligned_cols=142  Identities=12%  Similarity=0.092  Sum_probs=100.0

Q ss_pred             cCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC--------eEEEEeCCCcEEEEecCCCee--e-E
Q 010296          272 QGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE--------RVLTVGRDRSMQLWKVPEESR--L-V  339 (513)
Q Consensus       272 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~d~~i~iwd~~~~~~--~-~  339 (513)
                      .+.++|+ ++..-..|+-.|+..|+.+....-+.. |.-+.+.|+.        .-+.|-.+..|+-||++-...  + .
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            3444444 555667788999999999988875555 7777777753        245666789999999975433  1 1


Q ss_pred             E----ecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCC
Q 010296          340 F----RAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGS  415 (513)
Q Consensus       340 ~----~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  415 (513)
                      .    ........|.+...+|.+++|+.+|.|++||. .+....+.-                                 
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl---------------------------------  467 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL---------------------------------  467 (644)
T ss_pred             eeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc---------------------------------
Confidence            1    22345677888888999999999999999996 443332221                                 


Q ss_pred             cCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          416 YHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       416 ~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                         ++-..+|..+..+.+|++|++.+ +.++.+.++.
T Consensus       468 ---PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  468 ---PGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ---cccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence               33334599999999999988766 4477777764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.60  E-value=0.014  Score=50.61  Aligned_cols=101  Identities=11%  Similarity=0.102  Sum_probs=68.0

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCc-EEEEeCCCcceeeeccCcCCC--eEEEEEecCCCeEEEEeC-----CCcEEEEeCCC
Q 010296          223 ILALAVSSDGR-YLASGGLDRH-IHLWDTRIQEHIQAFPGHRGP--VSCLTFRQGTSELFSGSF-----DRTVKIWNAED  293 (513)
Q Consensus       223 v~~~~~s~~~~-~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~  293 (513)
                      ...|+|+|... -++.+-.-|+ ..++|....+...++....+.  .-.-.|+|+|.+|+..-.     -|.|-|||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            34577888543 3444544444 568888877766555432221  223479999999987654     37899999985


Q ss_pred             C-ceeEEeecccCCeEEEEeeCCCeEEEEeC
Q 010296          294 R-AYISTLFGHQSEVLTIDCLRKERVLTVGR  323 (513)
Q Consensus       294 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  323 (513)
                      + +.+..+..|.-....+.+.+||+++++..
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            4 44666777777778899999998776554

>smart00320 WD40 WD40 repeats

Probab=97.49  E-value=0.00027  Score=41.50  Aligned_cols=38  Identities=37%  Similarity=0.691  Sum_probs=33.5

Q ss_pred             ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEe
Q 010296          253 EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN  290 (513)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  290 (513)
                      +++..+..|...|.++.|.+.+..+++++.|+.|++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566677889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.45  E-value=0.037  Score=51.69  Aligned_cols=245  Identities=11%  Similarity=0.058  Sum_probs=104.3

Q ss_pred             CCCEEEEEe-CCCcEEEEeCCCc----ceeeeccC---c----CCCeEEEEEecCCCeEEEEeC------CCcEEEEeCC
Q 010296          231 DGRYLASGG-LDRHIHLWDTRIQ----EHIQAFPG---H----RGPVSCLTFRQGTSELFSGSF------DRTVKIWNAE  292 (513)
Q Consensus       231 ~~~~l~s~~-~dg~i~vwd~~~~----~~~~~~~~---~----~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~  292 (513)
                      ..++|+..+ ..+.|+|.|+.+.    ++..++..   +    -.....+...|+|..++++-.      -|.+.++|-.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777766 6789999998743    33333321   1    122234445578888886532      3568888888


Q ss_pred             CCceeEEeecccC---CeEEEEeeCCC-eEEEEe--------------------CCCcEEEEecCCCeeeEEecCC---C
Q 010296          293 DRAYISTLFGHQS---EVLTIDCLRKE-RVLTVG--------------------RDRSMQLWKVPEESRLVFRAPA---S  345 (513)
Q Consensus       293 ~~~~~~~~~~~~~---~v~~~~~~~~~-~~~~~~--------------------~d~~i~iwd~~~~~~~~~~~~~---~  345 (513)
                      +............   --+.+-|.|.. .+++..                    ...++.+||+.+.+.+......   .
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            7777666543222   23455566643 344432                    2467999999998877443332   2


Q ss_pred             CeeEEEeecC--Ce--EEEEeCCCCEEEEec-CCCC--eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCC-cC
Q 010296          346 SLECCCFISN--DE--FLSGSDDGSIELWSL-LRKK--PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGS-YH  417 (513)
Q Consensus       346 ~v~~~~~~~~--~~--~~~~~~dg~i~iwd~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~  417 (513)
                      -+..+.|..+  ..  |+.+.-.++|..|-- ..++  .-..+.......                   .+...+.. -.
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v-------------------~~~~lp~ml~~  306 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV-------------------EGWILPEMLKP  306 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE---------------------SS---GGGGG
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc-------------------Ccccccccccc
Confidence            2345555543  32  554444555554433 3332  111111111000                   00000000 00


Q ss_pred             CCCCcceEEEEEEecCCCEEEEec-CCCcEEEEEeCCCCcceeeeee----------------cCcccEEEEEEeecCCC
Q 010296          418 SSSAYSWVSSVTVCGGSDLAASGA-GNGSVRLWAIESETKDIQPLYN----------------LPLVGFVNSLAFAKSGQ  480 (513)
Q Consensus       418 ~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~~~~~~~----------------~~~~~~v~~v~~sp~~~  480 (513)
                      ......-|+.|.+|.|.++|+..+ ..|.|+.||+.....+...-..                ....+...-|..|.||+
T Consensus       307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGk  386 (461)
T PF05694_consen  307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGK  386 (461)
T ss_dssp             G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSS
T ss_pred             cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCe
Confidence            011123389999999999998776 5799999999886433222110                01234457899999999


Q ss_pred             EEEEEecCCCccccccc
Q 010296          481 FLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       481 ~l~~~~~~dg~v~~W~~  497 (513)
                      .|.++.|   ...-||.
T Consensus       387 RlYvTnS---Lys~WD~  400 (461)
T PF05694_consen  387 RLYVTNS---LYSAWDK  400 (461)
T ss_dssp             EEEEE-------HHHHH
T ss_pred             EEEEEee---ccccccc
Confidence            9998843   4555653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.37  E-value=0.023  Score=57.04  Aligned_cols=146  Identities=12%  Similarity=0.089  Sum_probs=85.3

Q ss_pred             ccEEEEEEcCCCCEEEEEe------CCC--cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC---------
Q 010296          221 KHILALAVSSDGRYLASGG------LDR--HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD---------  283 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------  283 (513)
                      ..+.+.+++|+|+.++...      .++  .|.+++. .+.......+  ...+.-.|+|+|..|++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4578899999999887665      243  4555554 2222222232  237888999998877766432         


Q ss_pred             ---CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEE---EecCCCeeeE-----Eec-CCCCeeEEE
Q 010296          284 ---RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQL---WKVPEESRLV-----FRA-PASSLECCC  351 (513)
Q Consensus       284 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i---wd~~~~~~~~-----~~~-~~~~v~~~~  351 (513)
                         +.+.+..+..+....   ...+.|..+.|+|+|.-++.-.++.|++   -....+....     ... ....+..+.
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence               233333443333222   2356799999999996443333577777   3323332111     111 223357789


Q ss_pred             eecCCeEEEEeCCCCEEEEec
Q 010296          352 FISNDEFLSGSDDGSIELWSL  372 (513)
Q Consensus       352 ~~~~~~~~~~~~dg~i~iwd~  372 (513)
                      |.+++.|+++..++...+|.+
T Consensus       504 W~~~~~L~V~~~~~~~~v~~v  524 (591)
T PRK13616        504 WRTGDSLVVGRSDPEHPVWYV  524 (591)
T ss_pred             EecCCEEEEEecCCCCceEEE
Confidence            999998777666554445543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.36  E-value=0.00037  Score=58.05  Aligned_cols=140  Identities=13%  Similarity=0.084  Sum_probs=79.5

Q ss_pred             EEEEeCCCcEEEEeCCCCceeEE-eecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEee
Q 010296          277 LFSGSFDRTVKIWNAEDRAYIST-LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFI  353 (513)
Q Consensus       277 l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~  353 (513)
                      |...+.+|.|.-++++..+.... -.-+... ..+ +--+..+++++.+|.|++|+.......  .+......+.++...
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v-~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRV-VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc-eee-cccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            45666788888888765432111 1111111 111 112457889999999999988732222  122222333333222


Q ss_pred             cCC--eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe
Q 010296          354 SND--EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC  431 (513)
Q Consensus       354 ~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  431 (513)
                      -+.  ...+++.+|.|+.|++.-.+.+.....+..                                    ..+..+..+
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~------------------------------------~~~e~~ivv  154 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF------------------------------------ESGEELIVV  154 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccC------------------------------------CCcceeEEe
Confidence            222  355899999999999888776655432211                                    114445555


Q ss_pred             cCCCEEEEe--cCCCcEEEEEeCCC
Q 010296          432 GGSDLAASG--AGNGSVRLWAIESE  454 (513)
Q Consensus       432 ~~~~~l~~g--~~dg~v~vwd~~~~  454 (513)
                      ..+.+|+.+  |.|..++.|++...
T Consensus       155 ~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  155 GSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cCCceEEeeccccchhhhhcchhhh
Confidence            556677766  77777888877543

>PRK10115 protease 2; Provisional

Probab=97.23  E-value=0.34  Score=50.15  Aligned_cols=192  Identities=11%  Similarity=0.056  Sum_probs=102.7

Q ss_pred             CCeEEEEECCCCCeEEEEe-----CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296          160 QSVTAVALSEDDSKGFSAS-----KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY  234 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  234 (513)
                      -.+..+.++|++++|+.+.     ....|++-|+.++..+...                   ....  -..++|+++++.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-------------------i~~~--~~~~~w~~D~~~  185 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-------------------LDNV--EPSFVWANDSWT  185 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-------------------ccCc--ceEEEEeeCCCE
Confidence            4477789999999988543     2346888999877533211                   0111  145999999887


Q ss_pred             EEEEeCC------CcEEEEeCCCc--ceeeeccCcCCCeE-EEEEecCCCeEEEEeC---CCcEEEEeCC--CCceeEEe
Q 010296          235 LASGGLD------RHIHLWDTRIQ--EHIQAFPGHRGPVS-CLTFRQGTSELFSGSF---DRTVKIWNAE--DRAYISTL  300 (513)
Q Consensus       235 l~s~~~d------g~i~vwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~iwd~~--~~~~~~~~  300 (513)
                      |+....+      ..|+.+++.++  +-...+........ .+..+.++++++..+.   ++.+.+|+..  .+.....+
T Consensus       186 ~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~  265 (686)
T PRK10115        186 FYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL  265 (686)
T ss_pred             EEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence            7665432      36788888877  33334443333333 2333447777664333   4578888853  33322222


Q ss_pred             ecccCCeEEEEeeCCCeEEEEeC----CCcEEEEecCC-CeeeEEecC--CCCeeEEEeecCCeEEEEeCCCCEEEEecC
Q 010296          301 FGHQSEVLTIDCLRKERVLTVGR----DRSMQLWKVPE-ESRLVFRAP--ASSLECCCFISNDEFLSGSDDGSIELWSLL  373 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~~~~~~~~----d~~i~iwd~~~-~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~  373 (513)
                      .........+. +..+.++..+.    ...|...++.. .....+..+  ...+..+.+..+..+++...+|.-+++-+.
T Consensus       266 ~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        266 PRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             ECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEc
Confidence            22222223222 33344443332    22344444442 222233333  235777777744345566777766665443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.22  E-value=0.13  Score=45.25  Aligned_cols=199  Identities=16%  Similarity=0.201  Sum_probs=118.3

Q ss_pred             ccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc-cCCeEEEEeeCCCeEEEEe-CCCcEEEEecCCC
Q 010296          258 FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH-QSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEE  335 (513)
Q Consensus       258 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~-~d~~i~iwd~~~~  335 (513)
                      +.+-...+.++.|+|+.+.|++......-.|+=...|..+.++.-. -...-.|.+..+++++.+. .++.++++.+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3455556999999999999999888888888877788888876421 2234567788888888666 5788888877654


Q ss_pred             eeeE-----------EecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccc
Q 010296          336 SRLV-----------FRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISN  403 (513)
Q Consensus       336 ~~~~-----------~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  403 (513)
                      ....           ....+.....++|.|.+. |+.+-.-.-+.||.+..............        ......+  
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~--------~~~~~~~--  230 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLD--------PTADRDL--  230 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccC--------cccccce--
Confidence            3221           112255677899998775 77777777777777653321111110000        0000000  


Q ss_pred             ccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEeCCCCcceeeeeecC--c-----ccEEEEEEe
Q 010296          404 GHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAIESETKDIQPLYNLP--L-----VGFVNSLAF  475 (513)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~--~-----~~~v~~v~~  475 (513)
                                       .-.-|.++.|.+ .+.+|+-+.+++.|.-.+....  .+..+.-..  |     .-.--.|+.
T Consensus       231 -----------------f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~--~~~~lsL~~g~~gL~~dipqaEGiam  291 (316)
T COG3204         231 -----------------FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE--VIELLSLTKGNHGLSSDIPQAEGIAM  291 (316)
T ss_pred             -----------------EeeccccceecCCCCcEEEEecCCceEEEEecCCC--eeeeEEeccCCCCCcccCCCcceeEE
Confidence                             011277778876 4456666667776666666543  122221111  1     112345788


Q ss_pred             ecCCCEEEEE
Q 010296          476 AKSGQFLIAG  485 (513)
Q Consensus       476 sp~~~~l~~~  485 (513)
                      .++|...+++
T Consensus       292 Dd~g~lYIvS  301 (316)
T COG3204         292 DDDGNLYIVS  301 (316)
T ss_pred             CCCCCEEEEe
Confidence            8888766665

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.18  E-value=0.0095  Score=61.24  Aligned_cols=109  Identities=12%  Similarity=0.044  Sum_probs=71.5

Q ss_pred             CeEEEEEecCCCeEEEE--eCCCcEEEEeCCCCceeE-----------EeecccCCeEEEEeeCC--CeEEEEeCCCcEE
Q 010296          264 PVSCLTFRQGTSELFSG--SFDRTVKIWNAEDRAYIS-----------TLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQ  328 (513)
Q Consensus       264 ~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~-----------~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~  328 (513)
                      +|..+...+|+...++.  +.+-.|..||+++...-.           +.........++.|+|.  ...+++..|+.|.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45566666776664433  334478999987532211           11112334567788874  3566778899999


Q ss_pred             EEecCCCeeeEE-ecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296          329 LWKVPEESRLVF-RAPASSLECCCFISNDE-FLSGSDDGSIELWSL  372 (513)
Q Consensus       329 iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~  372 (513)
                      +..+........ .......++++|+|.|+ +++|-..|++.-|-.
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec
Confidence            887765443322 24456788999999996 889999999988864

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.12  E-value=0.42  Score=49.17  Aligned_cols=197  Identities=13%  Similarity=0.061  Sum_probs=102.4

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC------C
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG------R  233 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~  233 (513)
                      +.+++...+.+...++.++.++.+....+..+.....                  ........|.|+.++|-|      +
T Consensus       488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~------------------~~~~~e~evaCLDisp~~d~~~~s~  549 (1096)
T KOG1897|consen  488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREV------------------SHKEFEYEVACLDISPLGDAPNKSR  549 (1096)
T ss_pred             CceEEEEEeecceEEEEecCccEEEEEEeeccceeee------------------eeheecceeEEEecccCCCCCCcce
Confidence            4455555555666677777667666666665542111                  112345679999999832      3


Q ss_pred             EEEEEeCCCcEEEEeC-CCcceeeec--cC--cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC--CCceeEEe--eccc
Q 010296          234 YLASGGLDRHIHLWDT-RIQEHIQAF--PG--HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE--DRAYISTL--FGHQ  304 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~-~~~~~~~~~--~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~--~~~~  304 (513)
                      +++.|.++..+.+.-. .....+...  .+  -...|.-.+|-.+..+|+++..||.+.-|-+.  ++..-..-  .-..
T Consensus       550 ~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt  629 (1096)
T KOG1897|consen  550 LLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGT  629 (1096)
T ss_pred             EEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCC
Confidence            7888988777665543 233222211  11  22345555666678899999999998766554  44322111  1122


Q ss_pred             CCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCC
Q 010296          305 SEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       305 ~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~  374 (513)
                      .++.--.|... ...+.+..|+-..+|.-+..-...-..-..--..+.|+.+..  .++....+.+++.-+..
T Consensus       630 ~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~  702 (1096)
T KOG1897|consen  630 QPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDE  702 (1096)
T ss_pred             CCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecc
Confidence            34443445443 344555666666666544332221111111111223333332  34444556677765544

>PHA02713 hypothetical protein; Provisional

Probab=97.12  E-value=0.074  Score=53.51  Aligned_cols=64  Identities=3%  Similarity=-0.081  Sum_probs=35.3

Q ss_pred             CCCEEEEecCC------CcEEEEEeCC-CCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCC--cccccccCCC
Q 010296          433 GSDLAASGAGN------GSVRLWAIES-ETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEP--RLGRWGHLPA  500 (513)
Q Consensus       433 ~~~~l~~g~~d------g~v~vwd~~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg--~v~~W~~~~~  500 (513)
                      ++++.+.|+.+      ..|..||..+ .  .+..+...+......+++.. +|+..++| |.+|  .+..||..+.
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~~~r~~~~~~~~-~~~iyv~G-g~~~~~~~e~yd~~~~  535 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTESRLSALHTILH-DNTIMMLH-CYESYMLQDTFNVYTY  535 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccCcccccceeEEE-CCEEEEEe-eecceeehhhcCcccc
Confidence            56677777654      2467788876 3  33434433322222222222 66666666 7777  6777766543

>PHA02713 hypothetical protein; Provisional

Probab=97.10  E-value=0.17  Score=51.05  Aligned_cols=64  Identities=14%  Similarity=0.249  Sum_probs=36.1

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCccee--eeccCcCCCeEEEEEecCCCeEEEEeCCC-----cEEEEeCCCCce
Q 010296          231 DGRYLASGGLD------RHIHLWDTRIQEHI--QAFPGHRGPVSCLTFRQGTSELFSGSFDR-----TVKIWNAEDRAY  296 (513)
Q Consensus       231 ~~~~l~s~~~d------g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~  296 (513)
                      ++..++.|+.+      ..+..||+.+....  ..+....... +++ .-+++..+.|+.++     .+.+||..+.+.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            56777777753      34778888776532  2222111111 222 23566667777654     488899887654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.09  E-value=0.013  Score=56.08  Aligned_cols=156  Identities=10%  Similarity=0.109  Sum_probs=98.9

Q ss_pred             CCeEEEEeeCCCeEE-EEe--CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-----eEEEEeCCCCEEEEecCC--
Q 010296          305 SEVLTIDCLRKERVL-TVG--RDRSMQLWKVPEESRLVFRAPASSLECCCFISND-----EFLSGSDDGSIELWSLLR--  374 (513)
Q Consensus       305 ~~v~~~~~~~~~~~~-~~~--~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~dg~i~iwd~~~--  374 (513)
                      .++..++|....+++ +.-  ..|.+++=|-      ...+....|..++|.|-+     .+++.-....|.||.+..  
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            467888887655544 321  2343333221      223344568889998864     277888899999998752  


Q ss_pred             ---CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          375 ---KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       375 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                         .+.+..-.....                                ....---..+.|+|....|++-.....-.++++
T Consensus        94 ~e~~K~l~sQtcEi~--------------------------------e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV  141 (671)
T PF15390_consen   94 TERNKLLMSQTCEIR--------------------------------EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSV  141 (671)
T ss_pred             cccccceeeeeeecc--------------------------------CCcccCCCcccccCCCceEEEEecCceeEeeee
Confidence               122211110000                                000000456789999988887776655567777


Q ss_pred             CCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          452 ESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      ......++  ..+...+.|.|.+|.+||+.|+++.|..-.-++||-...
T Consensus       142 ~~d~srVk--aDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  142 HCDSSRVK--ADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             eeCCceEE--EeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            76644333  233478999999999999999999888888899986554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.07  E-value=0.0034  Score=52.54  Aligned_cols=105  Identities=17%  Similarity=0.173  Sum_probs=69.0

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE-EEEcCCCCEEEEEeCCCcEEEEeC
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGRYLASGGLDRHIHLWDT  249 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~i~vwd~  249 (513)
                      +..|++|+.+|.|.+|...........                  ...-...|.+ |.--.++.+..+++.+|.|+.|++
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~  131 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDR------------------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI  131 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHh------------------hhcccccceeccccccccceeEEeccCCceeeecc
Confidence            456889999999999998732221111                  0111122222 222335567888999999999999


Q ss_pred             CCcceeeeccCcC-CCeEEEEEecCCCeEEEE--eCCCcEEEEeCCC
Q 010296          250 RIQEHIQAFPGHR-GPVSCLTFRQGTSELFSG--SFDRTVKIWNAED  293 (513)
Q Consensus       250 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~  293 (513)
                      .-.+.+.....|. .++..+..+..+..|..+  |.|..++.|++..
T Consensus       132 ~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  132 KPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            9888887777777 556666666666666666  6677777777654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.96  E-value=0.37  Score=45.81  Aligned_cols=139  Identities=11%  Similarity=0.075  Sum_probs=77.0

Q ss_pred             cEEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCC--cce--eeeccCcCCCeEEEEEecCCCeEEEEeCCCc
Q 010296          222 HILALAVSSDGRYLASGG-----------LDR-HIHLWDTRI--QEH--IQAFPGHRGPVSCLTFRQGTSELFSGSFDRT  285 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~-----------~dg-~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  285 (513)
                      ....|+|.++|+++++-.           ..+ .|.+++-..  ++.  ...+.........|++.+++  |++++....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence            367899999999877753           223 677776432  221  23333334456889999988  554544443


Q ss_pred             EEEEeCCCC-----c--ee-EEeec----ccCCeEEEEeeCCCeEEE-EeCC-------------------CcEEEEecC
Q 010296          286 VKIWNAEDR-----A--YI-STLFG----HQSEVLTIDCLRKERVLT-VGRD-------------------RSMQLWKVP  333 (513)
Q Consensus       286 i~iwd~~~~-----~--~~-~~~~~----~~~~v~~~~~~~~~~~~~-~~~d-------------------~~i~iwd~~  333 (513)
                      +++.+....     +  .+ ..+..    +......+.|.|+|.|+. .+..                   +.|..++..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            334454321     1  11 12222    123467899999987663 3311                   345555555


Q ss_pred             CCeeeEEecCCCCeeEEEeecCCeEEEEe
Q 010296          334 EESRLVFRAPASSLECCCFISNDEFLSGS  362 (513)
Q Consensus       334 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  362 (513)
                      +.....+.........++|++.|.+++..
T Consensus       173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             CCeEEEEecCcCCCccceECCCCCEEEEc
Confidence            44443333334445678888888765443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.95  E-value=0.33  Score=45.13  Aligned_cols=221  Identities=12%  Similarity=0.064  Sum_probs=110.1

Q ss_pred             EEcCCCCEEEEEeC---CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc
Q 010296          227 AVSSDGRYLASGGL---DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH  303 (513)
Q Consensus       227 ~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  303 (513)
                      +|.++|+.|+.++.   ...+++.|+.+++..+.-.+.........++|+.+.++-......|...|+.+.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            57788977766654   356778899988876654433233335677788888876666678999999998765444444


Q ss_pred             cCCeEEEEee--CCCeEEEEeC-----------------------CCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-e
Q 010296          304 QSEVLTIDCL--RKERVLTVGR-----------------------DRSMQLWKVPEESRLVFRAPASSLECCCFISND-E  357 (513)
Q Consensus       304 ~~~v~~~~~~--~~~~~~~~~~-----------------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~  357 (513)
                      ...+-...|.  .++..+++..                       ...|...|+.+++..........+..+.|+|.. .
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~  201 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT  201 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence            4444445553  3455544331                       123455566777666666666677788888876 3


Q ss_pred             EEEEeCCC----C-EEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe
Q 010296          358 FLSGSDDG----S-IELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC  431 (513)
Q Consensus       358 ~~~~~~dg----~-i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  431 (513)
                      +++-|..|    . -|||-+++. .....+..                                   ......+.-=-|.
T Consensus       202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-----------------------------------~~~~e~~gHEfw~  246 (386)
T PF14583_consen  202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-----------------------------------RMEGESVGHEFWV  246 (386)
T ss_dssp             EEEEEE-S-TTTSS-SEEEEETTS---EESS--------------------------------------TTEEEEEEEE-
T ss_pred             EEEEeccCCcceeceEEEEEEcCCCcceeeec-----------------------------------CCCCccccccccc
Confidence            55444332    1 366655432 22222211                                   1112236666788


Q ss_pred             cCCCEEEEe-----cCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEec
Q 010296          432 GGSDLAASG-----AGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVG  487 (513)
Q Consensus       432 ~~~~~l~~g-----~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~  487 (513)
                      |+|..|.--     +.+..|.-+++.++..  ..+...+   ....+.-++||++++-=++
T Consensus       247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~--~~~~~~p---~~~H~~ss~Dg~L~vGDG~  302 (386)
T PF14583_consen  247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGER--RRLMEMP---WCSHFMSSPDGKLFVGDGG  302 (386)
T ss_dssp             TTSS-EEEEEEETTT--EEEEEE-TTT--E--EEEEEE----SEEEEEE-TTSSEEEEEE-
T ss_pred             CCCCEEEEEeecCCCCceEEEeeCCCCCCc--eEEEeCC---ceeeeEEcCCCCEEEecCC
Confidence            998765532     2344677777777632  2222221   2445667789988765533

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.94  E-value=0.21  Score=50.31  Aligned_cols=190  Identities=12%  Similarity=0.134  Sum_probs=97.7

Q ss_pred             CCCCeEEEEeCCc------eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC-
Q 010296          169 EDDSKGFSASKDG------SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD-  241 (513)
Q Consensus       169 ~~~~~l~t~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-  241 (513)
                      ..+..++.||..+      .+..||..++.-....                 .. .+...-.++++. ++...++|+.+ 
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a-----------------~m-~~~r~~~~~~~~-~~~lYv~GG~~~  343 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA-----------------PM-PSPRCRVGVAVL-NGKLYVVGGYDS  343 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecC-----------------CC-CcccccccEEEE-CCEEEEEccccC
Confidence            3455667777763      5777887766432211                 00 112223344444 45778888888 


Q ss_pred             -----CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC-----cEEEEeCCCCceeEEeecccCCeEEEE
Q 010296          242 -----RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR-----TVKIWNAEDRAYISTLFGHQSEVLTID  311 (513)
Q Consensus       242 -----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~  311 (513)
                           .++..||..+.+....-.-.......-.-.-+|...++|+.||     +|-.||..+.+.-..-. .........
T Consensus       344 ~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~g  422 (571)
T KOG4441|consen  344 GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHG  422 (571)
T ss_pred             CCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeE
Confidence                 3577888877764432111111111111122567777888886     47788887765432221 111222222


Q ss_pred             e-eCCCeEE-EEeCC------CcEEEEecCCCeeeEEecCC--CCeeEEEeecCCeEEEEeCCCC-----EEEEecCCCC
Q 010296          312 C-LRKERVL-TVGRD------RSMQLWKVPEESRLVFRAPA--SSLECCCFISNDEFLSGSDDGS-----IELWSLLRKK  376 (513)
Q Consensus       312 ~-~~~~~~~-~~~~d------~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~dg~-----i~iwd~~~~~  376 (513)
                      . .-++++. +||.+      .++..||..++.-.....-.  ..-..++...+..++.|+.++.     |..||..+.+
T Consensus       423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCc
Confidence            2 2256554 66643      45677888776544222111  1122244444445778887763     5667766654


Q ss_pred             ee
Q 010296          377 PV  378 (513)
Q Consensus       377 ~~  378 (513)
                      -.
T Consensus       503 W~  504 (571)
T KOG4441|consen  503 WT  504 (571)
T ss_pred             ee
Confidence            33

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.94  E-value=0.25  Score=43.55  Aligned_cols=164  Identities=10%  Similarity=0.134  Sum_probs=108.6

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY  234 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  234 (513)
                      +.+-...|.++.|+|+.+.|++......-.||=...|..+.++.                 +.+ -...-.|.+..+|.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-----------------L~g-~~DpE~Ieyig~n~f  142 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-----------------LTG-FSDPETIEYIGGNQF  142 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-----------------ccc-cCChhHeEEecCCEE
Confidence            34555669999999999999998888888888778888887661                 111 222445778777877


Q ss_pred             EEEEeCCCcEEEEeCCCcceeee----------ccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce---eEEee
Q 010296          235 LASGGLDRHIHLWDTRIQEHIQA----------FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY---ISTLF  301 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~  301 (513)
                      .++--.++.+.++.+.....+..          ..........++|.|....|+.+-.-.-+.||.+.....   +....
T Consensus       143 vi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~  222 (316)
T COG3204         143 VIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL  222 (316)
T ss_pred             EEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc
Confidence            77777788888887765532211          111255788999999999999998888888887764331   11111


Q ss_pred             cc-------cCCeEEEEeeC-CCeEE-EEeCCCcEEEEecCCCe
Q 010296          302 GH-------QSEVLTIDCLR-KERVL-TVGRDRSMQLWKVPEES  336 (513)
Q Consensus       302 ~~-------~~~v~~~~~~~-~~~~~-~~~~d~~i~iwd~~~~~  336 (513)
                      .+       -..|.++.|.+ .+.++ -+..++.+...+.....
T Consensus       223 ~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         223 DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence            11       12355666765 34444 44456777777766553

>PRK10115 protease 2; Provisional

Probab=96.94  E-value=0.63  Score=48.20  Aligned_cols=110  Identities=6%  Similarity=0.000  Sum_probs=65.9

Q ss_pred             ccEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC------CcEEEE
Q 010296          221 KHILALAVSSDGRYLASGGL-----DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD------RTVKIW  289 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw  289 (513)
                      -.+..+.|+|++++|+.+..     ...|++.|+.++..+...-....  ..++|.++++.|+....+      ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            44778899999998887543     24688999988864322211211  569999999877655432      368888


Q ss_pred             eCCCC--ceeEEeecccCCeE-EEEeeCCCe-EEEEe---CCCcEEEEec
Q 010296          290 NAEDR--AYISTLFGHQSEVL-TIDCLRKER-VLTVG---RDRSMQLWKV  332 (513)
Q Consensus       290 d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~-~~~~~---~d~~i~iwd~  332 (513)
                      ++.++  +-...+........ .+..+.++. ++..+   .++.+.+|+.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            98887  33333333233333 222333543 33222   3467888884

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.87  E-value=0.3  Score=43.51  Aligned_cols=141  Identities=16%  Similarity=0.101  Sum_probs=86.1

Q ss_pred             CeEEEEECCCCCeEEEEe---CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          161 SVTAVALSEDDSKGFSAS---KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      .+.+.++++++..+|...   ....+.++...  .....+                  .  ....++.-.|++++...+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~------------------~--~g~~l~~PS~d~~g~~W~v   82 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPV------------------L--TGGSLTRPSWDPDGWVWTV   82 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceee------------------c--cCCccccccccCCCCEEEE
Confidence            688999999999887655   33445555433  322211                  0  1235777889999877766


Q ss_pred             EeCCCcEEEEe-CCCccee-eec--cCcCCCeEEEEEecCCCeEEEEe---CCCcEEEEeCC---CC------ceeEEee
Q 010296          238 GGLDRHIHLWD-TRIQEHI-QAF--PGHRGPVSCLTFRQGTSELFSGS---FDRTVKIWNAE---DR------AYISTLF  301 (513)
Q Consensus       238 ~~~dg~i~vwd-~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~  301 (513)
                      ...+...+++. ..++... ..+  ..-...|..+.++|+|..++...   .++.|.+--+.   .+      ..+....
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~  162 (253)
T PF10647_consen   83 DDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP  162 (253)
T ss_pred             EcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc
Confidence            66666666663 3333221 111  11122899999999999987555   35677776543   22      1112222


Q ss_pred             cccCCeEEEEeeCCCeEEEEeC
Q 010296          302 GHQSEVLTIDCLRKERVLTVGR  323 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~~~~~~~~  323 (513)
                      .....+..+.|.+++.|++...
T Consensus       163 ~~~~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  163 PLLSDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             cccCcceeeeecCCCEEEEEeC
Confidence            3356789999999998875553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.86  E-value=0.0048  Score=37.97  Aligned_cols=33  Identities=12%  Similarity=0.168  Sum_probs=29.5

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCc
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK  192 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~  192 (513)
                      ...|.+++|+|...+||.+..+|.|.||.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            456999999999999999999999999998 443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.85  E-value=0.29  Score=42.98  Aligned_cols=196  Identities=9%  Similarity=0.019  Sum_probs=111.3

Q ss_pred             ceeeeccCcCC--CeEEEEEecCCCeEEEEeCCC--cEEEEeCCCCceeEEeeccc-CCeEEEEeeCCCeEE-EEeCCCc
Q 010296          253 EHIQAFPGHRG--PVSCLTFRQGTSELFSGSFDR--TVKIWNAEDRAYISTLFGHQ-SEVLTIDCLRKERVL-TVGRDRS  326 (513)
Q Consensus       253 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~  326 (513)
                      +.+..++ |..  -...+.|..++.++-+.+.-|  .|+.+|+.+++......-.. ----.++... ++++ ..=.++.
T Consensus        34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~  111 (264)
T PF05096_consen   34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSE
T ss_pred             EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCe
Confidence            3455555 333  345678877777777777766  79999999998766543221 1223344443 3444 5556889


Q ss_pred             EEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296          327 MQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS  406 (513)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  406 (513)
                      ..+||..+-+.+........-..++. .+..|+.+.....|+++|..+.+....+.....                    
T Consensus       112 ~f~yd~~tl~~~~~~~y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~--------------------  170 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTFPYPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN--------------------  170 (264)
T ss_dssp             EEEEETTTTEEEEEEE-SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET--------------------
T ss_pred             EEEEccccceEEEEEecCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEEC--------------------
Confidence            99999998877754444456666763 334577777788899999998888777754221                    


Q ss_pred             CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeee-------------ecCcccEEEEE
Q 010296          407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLY-------------NLPLVGFVNSL  473 (513)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~-------------~~~~~~~v~~v  473 (513)
                                  ...-..++-+.+- +|.+.|-.=....|...|..++. ....+.             ..+.....+.+
T Consensus       171 ------------g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~-V~~~iDls~L~~~~~~~~~~~~~~dVLNGI  236 (264)
T PF05096_consen  171 ------------GRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK-VVGWIDLSGLRPEVGRDKSRQPDDDVLNGI  236 (264)
T ss_dssp             ------------TEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B-EEEEEE-HHHHHHHTSTTST--TTS-EEEE
T ss_pred             ------------CEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe-EEEEEEhhHhhhcccccccccccCCeeEeE
Confidence                        1111125556664 45444444444556666666651 111110             01124678999


Q ss_pred             EeecCCCEEEEE
Q 010296          474 AFAKSGQFLIAG  485 (513)
Q Consensus       474 ~~sp~~~~l~~~  485 (513)
                      |+.|....|.++
T Consensus       237 Ayd~~~~~l~vT  248 (264)
T PF05096_consen  237 AYDPETDRLFVT  248 (264)
T ss_dssp             EEETTTTEEEEE
T ss_pred             eEeCCCCEEEEE
Confidence            999988777666

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.77  E-value=0.61  Score=48.06  Aligned_cols=75  Identities=12%  Similarity=0.147  Sum_probs=53.1

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------cce---eeec--------cCcCCCeEEEEEecC---CC
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRI----------QEH---IQAF--------PGHRGPVSCLTFRQG---TS  275 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~----------~~~---~~~~--------~~~~~~v~~~~~~~~---~~  275 (513)
                      ...|..|.++|+|.+|+..|..|. .|-.+..          ++.   .+++        ..+...|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            456999999999999999887664 4443321          111   1111        124457889999996   47


Q ss_pred             eEEEEeCCCcEEEEeCCCCc
Q 010296          276 ELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       276 ~l~~~~~dg~i~iwd~~~~~  295 (513)
                      +|++-..|+++++||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            89999999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.77  E-value=0.19  Score=50.52  Aligned_cols=144  Identities=13%  Similarity=0.220  Sum_probs=75.2

Q ss_pred             CCCCEEEEEeCC------CcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCC------CcEEEEeCCCCc
Q 010296          230 SDGRYLASGGLD------RHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFD------RTVKIWNAEDRA  295 (513)
Q Consensus       230 ~~~~~l~s~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~  295 (513)
                      ..+.+++.|+..      ..+..||..++....  .+. ....-.++++. ++...++|+.+      .++..||..+.+
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            345566777766      367788888775432  222 22223444444 34667788888      357888888876


Q ss_pred             eeEEeecccCC-eEEEEeeCCC-eEEEEeCCCc-----EEEEecCCCeeeEEecCCCCeeEE-EeecCCe-EEEEeCCC-
Q 010296          296 YISTLFGHQSE-VLTIDCLRKE-RVLTVGRDRS-----MQLWKVPEESRLVFRAPASSLECC-CFISNDE-FLSGSDDG-  365 (513)
Q Consensus       296 ~~~~~~~~~~~-v~~~~~~~~~-~~~~~~~d~~-----i~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~~-~~~~~~dg-  365 (513)
                      ....-.-.... -.+++.. +| .+++||.+|.     +-.||..+.+-............. ...-+|+ +++|+.++ 
T Consensus       361 W~~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             eeccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence            44321111111 1122222 44 4457777753     666777665543322222222222 2223444 66777554 


Q ss_pred             -----CEEEEecCCCC
Q 010296          366 -----SIELWSLLRKK  376 (513)
Q Consensus       366 -----~i~iwd~~~~~  376 (513)
                           ++..||..+.+
T Consensus       440 ~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNT  455 (571)
T ss_pred             ccccceEEEEcCCCCc
Confidence                 35666666554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.72  E-value=0.0068  Score=37.32  Aligned_cols=34  Identities=9%  Similarity=0.128  Sum_probs=29.8

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH  254 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~  254 (513)
                      ...|.+++|+|...+||.++.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999998 4443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.67  E-value=0.4  Score=42.11  Aligned_cols=157  Identities=14%  Similarity=0.041  Sum_probs=97.0

Q ss_pred             cEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCcceeeeccCcC-CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296          222 HILALAVSSDGRYLASGGLDR--HIHLWDTRIQEHIQAFPGHR-GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      -...+.|..++.++-+.+.-|  .|+.+|+.+++......-.. ---..++...+ +.....-..+...+||..+.+.+.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence            356788877888888877665  79999999998765544222 22234455433 333345568899999999998888


Q ss_pred             EeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee---EEecC---CCCeeEEEeecCCeE-EEEeCCCCEEEEe
Q 010296          299 TLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL---VFRAP---ASSLECCCFISNDEF-LSGSDDGSIELWS  371 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~---~~~~~---~~~v~~~~~~~~~~~-~~~~~dg~i~iwd  371 (513)
                      ++. ..+.-+.++. .+..++.......|+++|..+-...   .....   -..+.-+.+. +|.+ +=.-....|...|
T Consensus       125 ~~~-y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id  201 (264)
T PF05096_consen  125 TFP-YPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID  201 (264)
T ss_dssp             EEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             EEe-cCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence            875 4456677773 3456777767789999998765443   12222   2234456665 4554 4444566788889


Q ss_pred             cCCCCeeEEee
Q 010296          372 LLRKKPVYIVK  382 (513)
Q Consensus       372 ~~~~~~~~~~~  382 (513)
                      ..+|+....+.
T Consensus       202 p~tG~V~~~iD  212 (264)
T PF05096_consen  202 PETGKVVGWID  212 (264)
T ss_dssp             TTT-BEEEEEE
T ss_pred             CCCCeEEEEEE
Confidence            99999888775

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.61  E-value=1.1  Score=46.57  Aligned_cols=240  Identities=9%  Similarity=0.045  Sum_probs=123.7

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc----------------CCCCE
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS----------------SDGRY  234 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------------~~~~~  234 (513)
                      +..|+.++.++.|.-.|..+++.+..+.+.......          ..| .....+++.                ..+..
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~----------~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~r  262 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG----------RQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARR  262 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc----------ccc-ccccceEEecCCcccccccccccccccCCE
Confidence            567788888899999999999987765332111000          000 001112221                13457


Q ss_pred             EEEEeCCCcEEEEeCCCcceeeeccCcCCCeE-------------EEEEec--CCCeEEEEeC----------CCcEEEE
Q 010296          235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVS-------------CLTFRQ--GTSELFSGSF----------DRTVKIW  289 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~iw  289 (513)
                      ++.++.|+.|.-.|..+|+.+..+.. .+.|.             .+.-.|  .+..+++|+.          +|.|+-+
T Consensus       263 V~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~  341 (764)
T TIGR03074       263 IILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF  341 (764)
T ss_pred             EEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence            88888999999999999998876542 11110             011111  1334555543          6889999


Q ss_pred             eCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCC
Q 010296          290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGS  366 (513)
Q Consensus       290 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~  366 (513)
                      |+.+|+.+..+..-.......  .+.+.....+..+  ...-+|...+....-.+...+    .+....+ .......+.
T Consensus       342 Da~TGkl~W~~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~p----d~~g~~r~~~~n~y~~s  415 (764)
T TIGR03074       342 DVNTGALVWAWDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTP----DQWGGDRTPADEKYSSS  415 (764)
T ss_pred             ECCCCcEeeEEecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccc----cccCCccccCcccccce
Confidence            999999988775321111111  1123222211111  233344433333221111110    0000001 111223566


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC---CEEEEecCC
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS---DLAASGAGN  443 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~g~~d  443 (513)
                      |.-.|..+++..-.++..+...-.                         +. ......+..+.. .+|   ..++.++.+
T Consensus       416 lvALD~~TGk~~W~~Q~~~hD~WD-------------------------~D-~~~~p~L~d~~~-~~G~~~~~v~~~~K~  468 (764)
T TIGR03074       416 LVALDATTGKERWVFQTVHHDLWD-------------------------MD-VPAQPSLVDLPD-ADGTTVPALVAPTKQ  468 (764)
T ss_pred             EEEEeCCCCceEEEecccCCcccc-------------------------cc-ccCCceEEeeec-CCCcEeeEEEEECCC
Confidence            778899999888877653321100                         00 000000222221 245   378999999


Q ss_pred             CcEEEEEeCCCC
Q 010296          444 GSVRLWAIESET  455 (513)
Q Consensus       444 g~v~vwd~~~~~  455 (513)
                      |.++++|-.+++
T Consensus       469 G~~~vlDr~tG~  480 (764)
T TIGR03074       469 GQIYVLDRRTGE  480 (764)
T ss_pred             CEEEEEECCCCC
Confidence            999999999883

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.61  E-value=0.68  Score=48.14  Aligned_cols=70  Identities=9%  Similarity=0.038  Sum_probs=48.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCC--------eEEEEEec----------------CCCeEEEEeCCCcEE
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGP--------VSCLTFRQ----------------GTSELFSGSFDRTVK  287 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~dg~i~  287 (513)
                      +..|+.++.++.|.-.|..+|+.+-.+......        ...+.+..                .+..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            557777888899999999999887766532210        12233321                234788888899999


Q ss_pred             EEeCCCCceeEEee
Q 010296          288 IWNAEDRAYISTLF  301 (513)
Q Consensus       288 iwd~~~~~~~~~~~  301 (513)
                      -.|..+|+.+..+.
T Consensus       274 ALDA~TGk~~W~fg  287 (764)
T TIGR03074       274 ALDADTGKLCEDFG  287 (764)
T ss_pred             EEECCCCCEEEEec
Confidence            99999998887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.50  E-value=0.32  Score=43.39  Aligned_cols=152  Identities=14%  Similarity=0.134  Sum_probs=86.6

Q ss_pred             CeEEEEeeCCCeEE-EEe---CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEE-eCCCCEEEEe-cCCCCeeE
Q 010296          306 EVLTIDCLRKERVL-TVG---RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSG-SDDGSIELWS-LLRKKPVY  379 (513)
Q Consensus       306 ~v~~~~~~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~dg~i~iwd-~~~~~~~~  379 (513)
                      .+.+.++++++..+ +..   ....++++..........  ....+..-.|.+++.+.+. ..+...+++. ...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            67888999988544 333   234455554433222222  3346777788888875543 4455555553 22332211


Q ss_pred             -EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec---CCCcEEEEEeCCCC
Q 010296          380 -IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA---GNGSVRLWAIESET  455 (513)
Q Consensus       380 -~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~---~dg~v~vwd~~~~~  455 (513)
                       .+..                                   ......|+.+.+||||..+|.-.   .++.|.|--+....
T Consensus       103 ~~v~~-----------------------------------~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~  147 (253)
T PF10647_consen  103 VEVDW-----------------------------------PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG  147 (253)
T ss_pred             EEecc-----------------------------------cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence             1110                                   00001499999999998877655   45788888765332


Q ss_pred             cc-ee----eeeec-CcccEEEEEEeecCCCEEEEEecCCCcccc
Q 010296          456 KD-IQ----PLYNL-PLVGFVNSLAFAKSGQFLIAGVGQEPRLGR  494 (513)
Q Consensus       456 ~~-~~----~~~~~-~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~  494 (513)
                      .- ..    .+... .....+++++|.+++.+++.+...++.+..
T Consensus       148 ~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  148 DGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             CCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence            11 11    11111 124679999999999988888666664444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.49  E-value=0.26  Score=48.91  Aligned_cols=69  Identities=22%  Similarity=0.305  Sum_probs=47.1

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      ....++++.-+|.+..++.+..||.|++|++.........                    ....+-..+.|...|  |++
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~--------------------~~~~p~~nlv~tnhg--l~~   70 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC--------------------EEAKPKENLVFTNHG--LVT   70 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh--------------------hhcCCccceeeeccc--eEE
Confidence            3456889999999999999999999999998765442211                    112233445565444  556


Q ss_pred             EeCCCcEEEEe
Q 010296          238 GGLDRHIHLWD  248 (513)
Q Consensus       238 ~~~dg~i~vwd  248 (513)
                      ...|..+.-|.
T Consensus        71 ~tsdrr~la~~   81 (1636)
T KOG3616|consen   71 ATSDRRALAWK   81 (1636)
T ss_pred             Eeccchhheee
Confidence            66677777775

>PRK13684 Ycf48-like protein; Provisional

Probab=96.47  E-value=0.77  Score=42.95  Aligned_cols=113  Identities=10%  Similarity=0.081  Sum_probs=66.2

Q ss_pred             CCCeEEEEEecCCCeEEEEeCCCcEEE-EeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEE
Q 010296          262 RGPVSCLTFRQGTSELFSGSFDRTVKI-WNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF  340 (513)
Q Consensus       262 ~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~  340 (513)
                      ...+.++.+.|++.+++++ ..|.+.. ++-...............++++.+.+++.++.++..|.+++=....+.....
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSK  250 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCcccc
Confidence            4568899999987666555 4555443 2221111222223345678899999999888778888775432333322211


Q ss_pred             -ec----CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC
Q 010296          341 -RA----PASSLECCCFISNDEFLSGSDDGSIELWSLLRKK  376 (513)
Q Consensus       341 -~~----~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  376 (513)
                       ..    ....+..+.+.+++.+++++.+|.|.. ....++
T Consensus       251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~  290 (334)
T PRK13684        251 PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGK  290 (334)
T ss_pred             ccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCC
Confidence             11    123467788888888777777886653 334343

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.39  E-value=0.2  Score=47.43  Aligned_cols=141  Identities=9%  Similarity=0.088  Sum_probs=93.0

Q ss_pred             CCCEEE-EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC-------eEEEEeCCCcEEEEeCCCCc-eeEEee
Q 010296          231 DGRYLA-SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-------ELFSGSFDRTVKIWNAEDRA-YISTLF  301 (513)
Q Consensus       231 ~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~-~~~~~~  301 (513)
                      +..+|+ .|+....++-.|++.|+.+..+..|...  -+.|.|..+       .-+.|-++..|.-.|.+-.. .+....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            444444 4556677888899999999988877654  567777432       23455566777777766432 222111


Q ss_pred             ----cccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecC
Q 010296          302 ----GHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLL  373 (513)
Q Consensus       302 ----~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~  373 (513)
                          .......+......|++++++..|-|++||--..... .+.+....|..+..+.+|.++.+.-...+.+-|+.
T Consensus       556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence                1223344555556789999999999999996543332 34555667888888999986666667778888765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.34  E-value=0.78  Score=43.25  Aligned_cols=195  Identities=9%  Similarity=0.071  Sum_probs=85.2

Q ss_pred             CCCeEEEEe-CCCcEEEEeCCC----CceeEEeec---cc----CCeEEEEeeCCCeE-EEE--eC----CCcEEEEecC
Q 010296          273 GTSELFSGS-FDRTVKIWNAED----RAYISTLFG---HQ----SEVLTIDCLRKERV-LTV--GR----DRSMQLWKVP  333 (513)
Q Consensus       273 ~~~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~-~~~--~~----d~~i~iwd~~  333 (513)
                      ..++|+..+ ..+.|+|.|+.+    .+..+++..   +.    .....+.+.|+|.+ +++  ..    -|.+.++|-.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345666655 678999999874    233444432   11    22344555677744 433  22    2456777766


Q ss_pred             CCeeeEEecC----CCCeeEEEeecCCe-EEEE--------------------eCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296          334 EESRLVFRAP----ASSLECCCFISNDE-FLSG--------------------SDDGSIELWSLLRKKPVYIVKNAHPLL  388 (513)
Q Consensus       334 ~~~~~~~~~~----~~~v~~~~~~~~~~-~~~~--------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~  388 (513)
                      +.........    ...-..+-+.|... +++.                    ....++++||+.+.+.++++...... 
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g-  244 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG-  244 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE-
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC-
Confidence            5444321111    11122333444332 2322                    24578999999999999998754321 


Q ss_pred             cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec--CCCEEEEec-CCCcEEEEEe-CCCCcceeeeeec
Q 010296          389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG--GSDLAASGA-GNGSVRLWAI-ESETKDIQPLYNL  464 (513)
Q Consensus       389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~g~-~dg~v~vwd~-~~~~~~~~~~~~~  464 (513)
                                                        .....|.|..  +..+-++|+ -.++|..|-- ..+.-....+..+
T Consensus       245 ----------------------------------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~i  290 (461)
T PF05694_consen  245 ----------------------------------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDI  290 (461)
T ss_dssp             ----------------------------------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE
T ss_pred             ----------------------------------CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEEC
Confidence                                              1144555543  333333332 3334444443 3331111111111


Q ss_pred             C----------c--------ccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          465 P----------L--------VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       465 ~----------~--------~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      +          .        ..-|+.+.+|.|.++|.+++--.|.|+.||+.....
T Consensus       291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~  346 (461)
T PF05694_consen  291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN  346 (461)
T ss_dssp             --EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred             CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence            1          1        356899999999999999989999999999876543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.32  Score=48.46  Aligned_cols=166  Identities=16%  Similarity=0.214  Sum_probs=89.5

Q ss_pred             CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeE----EecCCCCeeEEEeecCCeEE
Q 010296          284 RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLV----FRAPASSLECCCFISNDEFL  359 (513)
Q Consensus       284 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~  359 (513)
                      -.|+|+++ +|+.+..+.-..+.+..+.|+.+..+++...+|++++|++-......    +......|..+.+..+|.++
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVav  142 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAV  142 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEE
Confidence            45888887 45666555445558899999999999999999999999986544332    22333446666666666433


Q ss_pred             EEeCCCCEEEE-ecCCCCeeEEeec-CCCcc--cCCCCcccCcCc-cc--cc--------cCCCCCCCCCCcCCCCCcce
Q 010296          360 SGSDDGSIELW-SLLRKKPVYIVKN-AHPLL--DGLKNFEQDEGK-IS--NG--------HSENGNLNPGSYHSSSAYSW  424 (513)
Q Consensus       360 ~~~~dg~i~iw-d~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~-i~--~~--------~~~~~~~~~~~~~~~~~~~~  424 (513)
                      . ..+|.+.+- +..... +...+. .....  .....+.+.... +.  +.        ....+......+  ....+.
T Consensus       143 l-t~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~--~~~~~~  218 (829)
T KOG2280|consen  143 L-TVSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL--SWPNSS  218 (829)
T ss_pred             E-ecCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc--CCCCce
Confidence            3 334444433 222211 111111 00000  000011111000 00  00        000000000001  112355


Q ss_pred             EEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          425 VSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       425 i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      +..+.+||+.++|+-=...|.|.+-.....
T Consensus       219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  219 VVKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             EEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence            888999999999999999999999887654

>PHA03098 kelch-like protein; Provisional

Probab=96.30  E-value=0.69  Score=46.70  Aligned_cols=104  Identities=11%  Similarity=0.144  Sum_probs=51.9

Q ss_pred             CCCEEEEEeCCC------cEEEEeCCCcceeee--ccCcCCCeEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCcee
Q 010296          231 DGRYLASGGLDR------HIHLWDTRIQEHIQA--FPGHRGPVSCLTFRQGTSELFSGSFD-----RTVKIWNAEDRAYI  297 (513)
Q Consensus       231 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~  297 (513)
                      ++..++.|+.++      .+..||..+.+....  +........ ++ .-++..++.|+.+     ..+..||..+.+..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~-~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG-VT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce-EE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            456667776542      577888877654321  111111112 22 2256666677764     35778888776543


Q ss_pred             EEeec-ccCCeEEEEeeCCCeEE-EEeCC------CcEEEEecCCCee
Q 010296          298 STLFG-HQSEVLTIDCLRKERVL-TVGRD------RSMQLWKVPEESR  337 (513)
Q Consensus       298 ~~~~~-~~~~v~~~~~~~~~~~~-~~~~d------~~i~iwd~~~~~~  337 (513)
                      ..-.. +...-.+++.. ++.++ .||..      ..+..||+.+..-
T Consensus       372 ~~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             eCCCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            21110 11111122222 45444 55532      4578888876543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.30  E-value=0.84  Score=41.56  Aligned_cols=278  Identities=12%  Similarity=0.059  Sum_probs=128.9

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC-ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSG-KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      ...+..|.|.....-+++|. .++|  +....+ +.-.....     .         .........++|.|..+ ..+++
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~-----~---------~~~~~~~~l~~I~f~~~-~g~iv   77 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSL-----D---------LDNPFDYHLNSISFDGN-EGWIV   77 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-------------------S-----EEEEEEEETT-EEEEE
T ss_pred             CCceEEEEEecCCEEEEEec-CCEE--EEECCCCcccccccc-----C---------CCccceeeEEEEEecCC-ceEEE
Confidence            45899999995555555554 4543  333333 22111100     0         00001224677888643 44455


Q ss_pred             EeCCCcEEEEeCCCcceeeecc---CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc-eeEEeecccCCeEEEEee
Q 010296          238 GGLDRHIHLWDTRIQEHIQAFP---GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA-YISTLFGHQSEVLTIDCL  313 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~  313 (513)
                      |. .+ +.+.....|+.-..+.   .-.+....+....++. +..++..|.|+.=. ..++ -........+.+..+..+
T Consensus        78 G~-~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~  153 (302)
T PF14870_consen   78 GE-PG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS  153 (302)
T ss_dssp             EE-TT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-
T ss_pred             cC-Cc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC
Confidence            43 44 4444445454333321   1123334444444443 33344455543322 2232 233334456778888888


Q ss_pred             CCCeEEEEeCCCcEE-EEecCCC-eeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCC
Q 010296          314 RKERVLTVGRDRSMQ-LWKVPEE-SRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGL  391 (513)
Q Consensus       314 ~~~~~~~~~~d~~i~-iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  391 (513)
                      +++++++++..|.++ -|+.-.. -....+.....+..+.|.|++.+......|.|++=+...  ....+......    
T Consensus       154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~--~~~~w~~~~~~----  227 (302)
T PF14870_consen  154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD--DGETWSEPIIP----  227 (302)
T ss_dssp             TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT--EEEEE---B-T----
T ss_pred             CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCC--CccccccccCC----
Confidence            999999888877765 5664432 223444456789999999999887777888888766211  11222110000    


Q ss_pred             CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec-CcccEE
Q 010296          392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL-PLVGFV  470 (513)
Q Consensus       392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~v  470 (513)
                                                .......+..++|.+++...++|+.. . .+.....+ +..+..... ...+.+
T Consensus       228 --------------------------~~~~~~~~ld~a~~~~~~~wa~gg~G-~-l~~S~DgG-ktW~~~~~~~~~~~n~  278 (302)
T PF14870_consen  228 --------------------------IKTNGYGILDLAYRPPNEIWAVGGSG-T-LLVSTDGG-KTWQKDRVGENVPSNL  278 (302)
T ss_dssp             --------------------------TSS--S-EEEEEESSSS-EEEEESTT---EEEESSTT-SS-EE-GGGTTSSS--
T ss_pred             --------------------------cccCceeeEEEEecCCCCEEEEeCCc-c-EEEeCCCC-ccceECccccCCCCce
Confidence                                      01111228999999998877776644 2 23333333 555444322 235678


Q ss_pred             EEEEeecCCCEEEEEecCCCccccc
Q 010296          471 NSLAFAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       471 ~~v~~sp~~~~l~~~~~~dg~v~~W  495 (513)
                      ..|.|.+..+-++.  |.+|.|.-|
T Consensus       279 ~~i~f~~~~~gf~l--G~~G~ll~~  301 (302)
T PF14870_consen  279 YRIVFVNPDKGFVL--GQDGVLLRY  301 (302)
T ss_dssp             -EEEEEETTEEEEE---STTEEEEE
T ss_pred             EEEEEcCCCceEEE--CCCcEEEEe
Confidence            88999877555555  478877655

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.19  E-value=0.32  Score=37.48  Aligned_cols=113  Identities=17%  Similarity=0.177  Sum_probs=78.9

Q ss_pred             EEEEecCCCeEEEEeCCCcEEEEeCCCCc--------eeEEeecccCCeEEEEeeC-----CCeEEEEeCCCcEEEEecC
Q 010296          267 CLTFRQGTSELFSGSFDRTVKIWNAEDRA--------YISTLFGHQSEVLTIDCLR-----KERVLTVGRDRSMQLWKVP  333 (513)
Q Consensus       267 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~d~~i~iwd~~  333 (513)
                      .-.|......|++++.-|.|.|++.....        .+..+. ....|++++.-+     ...++..+...+|..||+.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~   81 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE   81 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence            34566666678888999999999876432        333343 566777876544     2356677777899999999


Q ss_pred             CCeeeEEecCCCCeeEEEeecC----CeEEEEeCCCCEEEEecCCCCeeEE
Q 010296          334 EESRLVFRAPASSLECCCFISN----DEFLSGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       334 ~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~dg~i~iwd~~~~~~~~~  380 (513)
                      .+..+.++.-...+.++.+-.-    ..++..+.+..|.-||....+...+
T Consensus        82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence            9888877777788888877432    2367666777888888665554443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.17  E-value=0.11  Score=53.81  Aligned_cols=197  Identities=11%  Similarity=-0.004  Sum_probs=108.5

Q ss_pred             EEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCC-CCCCCCCcccEEEEEEcCCCCEEEEEe--
Q 010296          163 TAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP-QGRATKQSKHILALAVSSDGRYLASGG--  239 (513)
Q Consensus       163 ~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~--  239 (513)
                      +.++.++....++.++..+.+.|+-..+.-....-......+..   ..+ ........-+|..+...+|+...++..  
T Consensus        45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd---~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~ts  121 (1405)
T KOG3630|consen   45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVD---ADENLTFKVEKEIPIVIFVCFHDATDSVVVSTS  121 (1405)
T ss_pred             hhhhcccccceEEEecCCcceeeeccccceeecccccccccccc---cccccceeeeccccceEEEeccCCceEEEEEec
Confidence            44566666666666666676666654432211110000000000   000 001112234566667777877655443  


Q ss_pred             CCCcEEEEeCCCccee-----eeccC------cCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296          240 LDRHIHLWDTRIQEHI-----QAFPG------HRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV  307 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~~-----~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  307 (513)
                      .+-.|..||+.+-..-     ..|..      ......++.|+|.-. ..+.+..|+.|++..+........-......+
T Consensus       122 ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~  201 (1405)
T KOG3630|consen  122 NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQ  201 (1405)
T ss_pred             CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccce
Confidence            3347889998643211     11111      223456788888543 25677789999888775433222222356678


Q ss_pred             EEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEec----CCCCeeEEEeecCCeEEEEe
Q 010296          308 LTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRA----PASSLECCCFISNDEFLSGS  362 (513)
Q Consensus       308 ~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~  362 (513)
                      ++++|+|.| +++++-..|++.-|...-.....+..    ....|.+++|.....|++..
T Consensus       202 Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  202 TAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             eeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            999999988 55677788999988765443222211    24678999998877655433

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.12  E-value=0.0058  Score=61.11  Aligned_cols=203  Identities=15%  Similarity=0.182  Sum_probs=113.8

Q ss_pred             hhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCC--CccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          153 RVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSS--GKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ..+++..+.|-.++|-. +...++  -.-|.+.||++.-  |+....+.     +.         ....-...+.-+.|.
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~-----v~---------~~~p~gs~~~~V~wc  189 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLE-----VT---------PITPYGSDPQLVSWC  189 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceE-----Ee---------ecCcCCCCcceeeec
Confidence            45678889999998843 222222  2236788898753  33222110     00         011112223444444


Q ss_pred             ---CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEE-----------EecCCCeEEEEeCCCcEEEEeCC---
Q 010296          230 ---SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLT-----------FRQGTSELFSGSFDRTVKIWNAE---  292 (513)
Q Consensus       230 ---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~dg~i~iwd~~---  292 (513)
                         ++.-++..+-.++.|++.++.+... ..+.+|...+..++           ++|||+.|++++.||.+++|.+.   
T Consensus       190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g  268 (1283)
T KOG1916|consen  190 PIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG  268 (1283)
T ss_pred             ccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence               4666777777889999887765433 44555776665543           58999999999999999888763   


Q ss_pred             --CCceeEEeeccc-CCeEEEEeeCC-------C--eEE-EE-eCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-
Q 010296          293 --DRAYISTLFGHQ-SEVLTIDCLRK-------E--RVL-TV-GRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-  357 (513)
Q Consensus       293 --~~~~~~~~~~~~-~~v~~~~~~~~-------~--~~~-~~-~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-  357 (513)
                        ..+|+...+.|. .+-.|..|+.+       +  .++ ++ ..+..+++|.....++. +......+..+. -+++. 
T Consensus       269 ~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl-l~~~~d~v~iV~-p~~~~v  346 (1283)
T KOG1916|consen  269 KIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL-LDKLIDGVQIVG-PHDGEV  346 (1283)
T ss_pred             cccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh-hhhcccceEeec-CCCccc
Confidence              234555556666 34344445432       1  222 33 34667889987665554 111222233333 22221 


Q ss_pred             ------------EEEEeCCCCEEEEecCC
Q 010296          358 ------------FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       358 ------------~~~~~~dg~i~iwd~~~  374 (513)
                                  ++..+-++.|.+|.-+.
T Consensus       347 ~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  347 TDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             cchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence                        33455678888886544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.12  E-value=0.74  Score=39.17  Aligned_cols=124  Identities=7%  Similarity=0.067  Sum_probs=70.1

Q ss_pred             CCCeEEEEEecCCCeEEEEeC---------CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-EE-EEeCCCcEEEE
Q 010296          262 RGPVSCLTFRQGTSELFSGSF---------DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-VL-TVGRDRSMQLW  330 (513)
Q Consensus       262 ~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~iw  330 (513)
                      ....+.-..+|+|++++-.-.         .|.++.|-+.  ..+..+...-.--+.++|..+.+ +. +-+.+-.|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            345666778899998442211         2344555432  22223333334446778877653 33 44556777667


Q ss_pred             e--cCCCeee----EE--ec----CCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296          331 K--VPEESRL----VF--RA----PASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPL  387 (513)
Q Consensus       331 d--~~~~~~~----~~--~~----~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (513)
                      |  ..++...    .+  ..    .......+++...|. +++.-..++|..+|..+|+.+..++...+.
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q  255 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ  255 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence            7  4444322    11  11    111122344455665 556677789999999999999999866443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.08  E-value=0.002  Score=59.92  Aligned_cols=145  Identities=20%  Similarity=0.208  Sum_probs=100.0

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-EE
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA-SG  238 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~  238 (513)
                      ..-....|-|.+.-++.++.+..|..||-....... .                    ..+.....++|..++..++ .+
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le-~--------------------n~tg~aldm~wDkegdvlavlA   93 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILE-L--------------------NPTGKALDMAWDKEGDVLAVLA   93 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhhhhcceecc-c--------------------CCchhHhhhhhccccchhhhhh
Confidence            334455677877778988889999999865433222 1                    2234456778888777554 45


Q ss_pred             eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeE
Q 010296          239 GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERV  318 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  318 (513)
                      -..+.+.+|++.+....+.-.+....-.-+.|++....++.+...|.+.|++..+.+.+...-.|...+.++++.+.++.
T Consensus        94 ek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v  173 (615)
T KOG2247|consen   94 EKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV  173 (615)
T ss_pred             hcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee
Confidence            56789999998754322111111112222788999999999999999999999887776666558889999999988877


Q ss_pred             EEEeCCC
Q 010296          319 LTVGRDR  325 (513)
Q Consensus       319 ~~~~~d~  325 (513)
                      +.++.+.
T Consensus       174 il~dcd~  180 (615)
T KOG2247|consen  174 ILCDCDN  180 (615)
T ss_pred             eecCcHH
Confidence            7665543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.95  E-value=0.9  Score=43.31  Aligned_cols=144  Identities=10%  Similarity=0.060  Sum_probs=87.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce--eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc----
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEH--IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA----  295 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----  295 (513)
                      ....+..++++.+++.+..-..++-|+-  +..  ...-......+.++.|.+++..++++ ..|.+. |....++    
T Consensus       240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~  315 (398)
T PLN00033        240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED  315 (398)
T ss_pred             ceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence            3555677888888777764333333442  221  11122234568899999988877665 456543 3333443    


Q ss_pred             -eeEEeec--ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEE----ecCCCCeeEEEeecCCeEEEEeCCCCEE
Q 010296          296 -YISTLFG--HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF----RAPASSLECCCFISNDEFLSGSDDGSIE  368 (513)
Q Consensus       296 -~~~~~~~--~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~dg~i~  368 (513)
                       ....+..  ....+..+.+.+++.+++++..|.+....- .++....    ......+..+.|.+++..++.+.+|.|.
T Consensus       316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D-~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il  394 (398)
T PLN00033        316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD-GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLL  394 (398)
T ss_pred             cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC-CCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEE
Confidence             1222221  223588899999999999999998777643 3333222    1223567788988888877777888876


Q ss_pred             EE
Q 010296          369 LW  370 (513)
Q Consensus       369 iw  370 (513)
                      -|
T Consensus       395 ~~  396 (398)
T PLN00033        395 RY  396 (398)
T ss_pred             Ee
Confidence            55

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.95  E-value=0.89  Score=38.69  Aligned_cols=219  Identities=11%  Similarity=0.090  Sum_probs=113.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeee-ccCcCCCeEEEEEecCC---CeEEEEeCCCcEEEEeCCC--CceeEEeec---
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQA-FPGHRGPVSCLTFRQGT---SELFSGSFDRTVKIWNAED--RAYISTLFG---  302 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~--~~~~~~~~~---  302 (513)
                      +.++.+--..|.|.-||+.+.+..+. +.+  .++.++.+--.+   .+.+.++..-.|.-||...  .....++..   
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            34455544567788899877654332 221  123333332222   2333444444455566322  222222211   


Q ss_pred             --ccCCeEEEEeeCCCeEEEEeC----------CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEE
Q 010296          303 --HQSEVLTIDCLRKERVLTVGR----------DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIE  368 (513)
Q Consensus       303 --~~~~v~~~~~~~~~~~~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~  368 (513)
                        .....+.-...|+|+++.+..          .|.++.|-....- ......-.--..++|+.+.+  +++-+.+-.|.
T Consensus       105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v-~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQV-ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCc-eeeehhccCCccccccccCcEEEEEccCceEEe
Confidence              133455556778898876653          2444555433221 12222222334567776654  44666777787


Q ss_pred             EEe--cCCCC-----eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296          369 LWS--LLRKK-----PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA  441 (513)
Q Consensus       369 iwd--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  441 (513)
                      -||  ..+|.     .+..++...+..                                 ....-.+++...|++.++.-
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e---------------------------------~~~PDGm~ID~eG~L~Va~~  230 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFE---------------------------------SLEPDGMTIDTEGNLYVATF  230 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcC---------------------------------CCCCCcceEccCCcEEEEEe
Confidence            777  55543     233332211100                                 00022344566888888888


Q ss_pred             CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEee-cCCCEEEEEecCC
Q 010296          442 GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFA-KSGQFLIAGVGQE  489 (513)
Q Consensus       442 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~~~~~d  489 (513)
                      ..|+|...|..++ +.+..+.-  ....|+|++|- |+-..|++++..+
T Consensus       231 ng~~V~~~dp~tG-K~L~eikl--Pt~qitsccFgGkn~d~~yvT~aa~  276 (310)
T KOG4499|consen  231 NGGTVQKVDPTTG-KILLEIKL--PTPQITSCCFGGKNLDILYVTTAAK  276 (310)
T ss_pred             cCcEEEEECCCCC-cEEEEEEc--CCCceEEEEecCCCccEEEEEehhc
Confidence            8899999999998 44444433  36679999996 3334555543443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.89  E-value=0.052  Score=51.12  Aligned_cols=142  Identities=14%  Similarity=0.162  Sum_probs=87.1

Q ss_pred             CCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC-------EEEEEeCC
Q 010296          170 DDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR-------YLASGGLD  241 (513)
Q Consensus       170 ~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~s~~~d  241 (513)
                      +..+|+ .|+.-..++--|+.-|+.+..+                   ..|.. | -+.|.|..+       .-++|-.+
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW-------------------~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~  536 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEW-------------------DLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSD  536 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEe-------------------ecCCc-c-eeecCCchhHHhcCccceEEeecc
Confidence            445555 4566667777788888776654                   11222 2 456666322       22344445


Q ss_pred             CcEEEEeCCC-cceeeec--cC--cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC
Q 010296          242 RHIHLWDTRI-QEHIQAF--PG--HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE  316 (513)
Q Consensus       242 g~i~vwd~~~-~~~~~~~--~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  316 (513)
                      ..|.-.|.+- |..+...  +.  ......+..-. ...++++++..|-|++||--..+....+.+....|..+....+|
T Consensus       537 ~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~G  615 (776)
T COG5167         537 YSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANG  615 (776)
T ss_pred             cceEEecccccCCceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCC
Confidence            5666666542 2212111  11  11122222222 34689999999999999976555556677778889999999999


Q ss_pred             eEEEEeCCCcEEEEecC
Q 010296          317 RVLTVGRDRSMQLWKVP  333 (513)
Q Consensus       317 ~~~~~~~d~~i~iwd~~  333 (513)
                      .++.+.....+.+.|++
T Consensus       616 k~ilaTCk~yllL~d~~  632 (776)
T COG5167         616 KHILATCKNYLLLTDVP  632 (776)
T ss_pred             cEEEEeecceEEEEecc
Confidence            88877777888888875

>PHA02790 Kelch-like protein; Provisional

Probab=95.70  E-value=1.1  Score=44.27  Aligned_cols=141  Identities=12%  Similarity=0.138  Sum_probs=68.8

Q ss_pred             CCCEEEEEeCC--CcEEEEeCCCccee--eeccCcCCCeEEEEEecCCCeEEEEeCCC---cEEEEeCCCCceeEEeecc
Q 010296          231 DGRYLASGGLD--RHIHLWDTRIQEHI--QAFPGHRGPVSCLTFRQGTSELFSGSFDR---TVKIWNAEDRAYISTLFGH  303 (513)
Q Consensus       231 ~~~~l~s~~~d--g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~  303 (513)
                      ++...+.|+.+  ..+..|+..+++..  ..+....... +++ .-+++..+.|+.++   .+..||..+.+....-...
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence            57777777753  45788887655432  2222111111 222 23566666776543   4778888776543321111


Q ss_pred             cCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCC--CCeeEEEeecCCeEEEEeCC-----CCEEEEecCCC
Q 010296          304 QSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPA--SSLECCCFISNDEFLSGSDD-----GSIELWSLLRK  375 (513)
Q Consensus       304 ~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~d-----g~i~iwd~~~~  375 (513)
                      ..........-++.+++.|  |.+.+||..+.+-.......  ..-.+++...+..+++|+.+     ..+.+||..+.
T Consensus       396 ~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        396 YPHYKSCALVFGRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CccccceEEEECCEEEEEC--CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence            1111111122356666544  45778888766543222111  11223333333346677654     34667776654

>PHA02790 Kelch-like protein; Provisional

Probab=95.67  E-value=1.9  Score=42.80  Aligned_cols=139  Identities=11%  Similarity=0.100  Sum_probs=65.6

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCC--CcEEEEeCCCCceeEEee
Q 010296          231 DGRYLASGGLDR-----HIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFD--RTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       231 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~  301 (513)
                      ++.++++|+.++     .+..||..++....  .+....... +++ .-++...+.|+.+  ..+..||..+++....-.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            455667777542     46778877765332  222111111 222 2356666677653  457888877654332211


Q ss_pred             cccCC-eEEEEeeCCCeEE-EEeCC---CcEEEEecCCCeeeEEecCCCCe-eEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296          302 GHQSE-VLTIDCLRKERVL-TVGRD---RSMQLWKVPEESRLVFRAPASSL-ECCCFISNDE-FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       302 ~~~~~-v~~~~~~~~~~~~-~~~~d---~~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~-~~~~~~dg~i~iwd~~~  374 (513)
                      -.... -.+++. -++++. .||.+   ..+..||..+..-........+. ...+..-++. ++.|   |.+.+||..+
T Consensus       349 l~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~  424 (480)
T PHA02790        349 LLKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS  424 (480)
T ss_pred             CCCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence            11111 112222 255554 55644   34677887765433221111111 1122234555 4455   3567777765


Q ss_pred             C
Q 010296          375 K  375 (513)
Q Consensus       375 ~  375 (513)
                      .
T Consensus       425 ~  425 (480)
T PHA02790        425 N  425 (480)
T ss_pred             C
Confidence            4

>PHA03098 kelch-like protein; Provisional

Probab=95.62  E-value=0.76  Score=46.41  Aligned_cols=142  Identities=12%  Similarity=0.164  Sum_probs=68.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCC------CcEEEEeCCCCcee
Q 010296          231 DGRYLASGGLD-----RHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFD------RTVKIWNAEDRAYI  297 (513)
Q Consensus       231 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~  297 (513)
                      ++..++.|+.+     ..+..||..+.+...  .+.... .-.+++ .-+++..+.|+..      ..+..||+.+.+..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-YNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-ccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            57777778765     347788877665332  121111 111222 2345666666632      45888998876543


Q ss_pred             EEeecccC-CeEEEEeeCCCeEE-EEeCC--------CcEEEEecCCCeeeEEecCC--CCeeEEEeecCCe-EEEEeCC
Q 010296          298 STLFGHQS-EVLTIDCLRKERVL-TVGRD--------RSMQLWKVPEESRLVFRAPA--SSLECCCFISNDE-FLSGSDD  364 (513)
Q Consensus       298 ~~~~~~~~-~v~~~~~~~~~~~~-~~~~d--------~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~~d  364 (513)
                      ..-..... .-.++... ++.++ .||..        ..+.+||..+.+-.......  ....+++.. ++. ++.|+.+
T Consensus       420 ~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~  497 (534)
T PHA03098        420 KGSPLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF-NNKIYVVGGDK  497 (534)
T ss_pred             ecCCCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-CCEEEEEcCCc
Confidence            22110111 11122222 45444 55532        23788888776543222111  111122222 454 5566543


Q ss_pred             -----CCEEEEecCCCC
Q 010296          365 -----GSIELWSLLRKK  376 (513)
Q Consensus       365 -----g~i~iwd~~~~~  376 (513)
                           ..|.+||..+.+
T Consensus       498 ~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        498 YEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCcccceeEEEeCCCCE
Confidence                 467778776653

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.50  E-value=1.3  Score=44.86  Aligned_cols=169  Identities=12%  Similarity=0.074  Sum_probs=95.3

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhh-ccCCC--CCCCCCCCCCcccEEEEEEcC--CCC
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL-KSHGA--KDPQGRATKQSKHILALAVSS--DGR  233 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~v~~~~~s~--~~~  233 (513)
                      +...+++.=   ..+|+++. .+.|.||++..........+..... .....  .............|+.|....  ...
T Consensus        40 KNNLtalsq---~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~E  115 (717)
T PF08728_consen   40 KNNLTALSQ---RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEE  115 (717)
T ss_pred             ccceeEEec---CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCee
Confidence            344444432   66777766 6899999987654422100000000 00000  000000011223355555443  456


Q ss_pred             EEEEEeCCCcEEEEeCCC-------c----c---------eeeeccCcCCCeEEEEEe--cCCCeEEEEeCCCcEEEEeC
Q 010296          234 YLASGGLDRHIHLWDTRI-------Q----E---------HIQAFPGHRGPVSCLTFR--QGTSELFSGSFDRTVKIWNA  291 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~  291 (513)
                      .|+.|..||.|.+|.+++       .    .         +-..+. -...+++++++  ...++||+++....|.||-.
T Consensus       116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf  194 (717)
T PF08728_consen  116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF  194 (717)
T ss_pred             EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence            888999999999997521       0    0         111122 34578999998  77788888888888888865


Q ss_pred             CCC--ce-eEEeecccCCeEEEEeeCCC-------eEEEEeCCCcEEEEec
Q 010296          292 EDR--AY-ISTLFGHQSEVLTIDCLRKE-------RVLTVGRDRSMQLWKV  332 (513)
Q Consensus       292 ~~~--~~-~~~~~~~~~~v~~~~~~~~~-------~~~~~~~d~~i~iwd~  332 (513)
                      ...  +. ...-..+...|-+|+|.++.       .+++++-.|.+.+|++
T Consensus       195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            442  11 11111256678899987632       3557778999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.42  E-value=0.69  Score=44.00  Aligned_cols=143  Identities=16%  Similarity=0.140  Sum_probs=75.3

Q ss_pred             CCeEEEEECCCCCeEEEEe-----------CCc-eEEEEeCCCCccc--cccCCChhhhccCCCCCCCCCCCCCcccEEE
Q 010296          160 QSVTAVALSEDDSKGFSAS-----------KDG-SILHWDVSSGKGV--KYLWPSEEVLKSHGAKDPQGRATKQSKHILA  225 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~-----------~dg-~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (513)
                      .....|+|.++|+++++-.           ..+ .|.+++-.++.-.  ...                 .+.........
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~-----------------vfa~~l~~p~G   76 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSN-----------------VFAEELSMVTG   76 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeE-----------------EeecCCCCccc
Confidence            4567899999999777653           223 6777765433211  100                 01112234578


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEE-eCCCc-----c---eeeeccC----cCCCeEEEEEecCCCeEEEEeCC---------
Q 010296          226 LAVSSDGRYLASGGLDRHIHLW-DTRIQ-----E---HIQAFPG----HRGPVSCLTFRQGTSELFSGSFD---------  283 (513)
Q Consensus       226 ~~~s~~~~~l~s~~~dg~i~vw-d~~~~-----~---~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d---------  283 (513)
                      |++.+++ +++ ++.. .|..| +....     +   .+..+..    +......++|.|+|.+.++.+..         
T Consensus        77 i~~~~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~  153 (367)
T TIGR02604        77 LAVAVGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPG  153 (367)
T ss_pred             eeEecCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCC
Confidence            9999888 444 4434 34434 44211     1   1222322    23457789999999876654421         


Q ss_pred             ----------CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeC
Q 010296          284 ----------RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR  323 (513)
Q Consensus       284 ----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  323 (513)
                                |.|..++..++.. ..+.........++|++++.++++..
T Consensus       154 ~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       154 TSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence                      3455555544432 22222223346777777776665443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.34  E-value=3  Score=40.59  Aligned_cols=309  Identities=15%  Similarity=0.072  Sum_probs=146.5

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ..+|.++.+...|. +..|+.||. ..||..+++.++...                  .....+|..+..+-.| .|.+|
T Consensus       164 d~~V~aLv~D~~g~-lWvgT~dGL-~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg-~LWVG  222 (671)
T COG3292         164 DTPVVALVFDANGR-LWVGTPDGL-SYFDAGRGKALQLAS------------------PPLDKAINALIADVQG-RLWVG  222 (671)
T ss_pred             CccceeeeeeccCc-EEEecCCcc-eEEccccceEEEcCC------------------CcchhhHHHHHHHhcC-cEEEE
Confidence            45788888887774 677787774 556777766554321                  1112456666655555 46778


Q ss_pred             eCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee-EEeecc--cCCeEEEEeeC
Q 010296          239 GLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI-STLFGH--QSEVLTIDCLR  314 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~--~~~v~~~~~~~  314 (513)
                      +.+| |++.+....+...-... ....|..+.-..+| .+-.|+..|..+. .+...... ...+.|  -..|.++....
T Consensus       223 TdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~  299 (671)
T COG3292         223 TDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDT  299 (671)
T ss_pred             eccc-eEEEchhhccccccCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeecc
Confidence            7666 77777655222211111 23334433333333 3555555554332 22222221 111212  22445555556


Q ss_pred             CCeEEEEeCCCcEEEEecCCCeeeEEecC-CCCeeEEEeecC---CeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccC
Q 010296          315 KERVLTVGRDRSMQLWKVPEESRLVFRAP-ASSLECCCFISN---DEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDG  390 (513)
Q Consensus       315 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~---~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  390 (513)
                      +|.+.++..++.+++-...-.....+... ...+..++..|.   ..+.-..+-|.+.+-+-.++..+.......+....
T Consensus       300 dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit  379 (671)
T COG3292         300 DGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNIT  379 (671)
T ss_pred             CCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccc
Confidence            78888888887776654321111111111 111112222221   11222222333444444455544443333332222


Q ss_pred             CCCcccCcCccccccCCCCCCC--------CCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeee
Q 010296          391 LKNFEQDEGKISNGHSENGNLN--------PGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLY  462 (513)
Q Consensus       391 ~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~  462 (513)
                      ...+.. .+.+.++...+|-..        +.........+.|..+.-.|+++ |..|+.+|.++. +.+.+ +....+.
T Consensus       380 ~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~-~v~n~ln  455 (671)
T COG3292         380 TTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESG-RVLNLLN  455 (671)
T ss_pred             hhhhcc-CCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Ccccc-chhcccc
Confidence            222333 344444433322211        11111233456688888889888 778888885543 22221 1111111


Q ss_pred             ---ecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          463 ---NLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       463 ---~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                         .....+.|..+...|+|++-+++ +.  .|..|+..
T Consensus       456 ~~~~~l~~s~~~~lg~~~~g~Lw~a~-g~--gva~~~sq  491 (671)
T COG3292         456 PGSHGLDGSRVEQLGLGPDGRLWLAA-GS--GVAAWESQ  491 (671)
T ss_pred             cccCcCCcchhhhhccCCCCceEEEe-cc--eeeeeccc
Confidence               11124457788899999875554 22  35666543

>PRK13684 Ycf48-like protein; Provisional

Probab=95.29  E-value=2.6  Score=39.48  Aligned_cols=155  Identities=12%  Similarity=0.043  Sum_probs=88.2

Q ss_pred             cCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEe
Q 010296          304 QSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       304 ~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                      ...+..+.+.+++.++..+..|.+..-.-..+...  ........+..+.+.+++.++..+..|.+++=....+..-...
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~  251 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKP  251 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccc
Confidence            45688899999998888888887664311122211  2233446788888989888766667776653223333221111


Q ss_pred             ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296          382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL  461 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~  461 (513)
                      ....                                 ......+..+.+.|++.++++| .+|.|. .....+ ...+..
T Consensus       252 ~~~~---------------------------------~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G-~tW~~~  295 (334)
T PRK13684        252 IIPE---------------------------------ITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGG-KTWEKD  295 (334)
T ss_pred             cCCc---------------------------------cccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCC-CCCeEC
Confidence            1000                                 0011227888999987766555 566554 344433 344433


Q ss_pred             ee-cCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          462 YN-LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       462 ~~-~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      .. .......+.+.|..+++.+++  |..|.|..|+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~--G~~G~il~~~  329 (334)
T PRK13684        296 PVGEEVPSNFYKIVFLDPEKGFVL--GQRGVLLRYV  329 (334)
T ss_pred             CcCCCCCcceEEEEEeCCCceEEE--CCCceEEEec
Confidence            21 112345778888877776654  5788887764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.19  E-value=2.4  Score=38.64  Aligned_cols=151  Identities=11%  Similarity=0.091  Sum_probs=78.3

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcce-eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEH-IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      ..+....++..+++ +..|.|+.= ...|+. ......-.+.+..+..+++|++++++.......-|+.........-..
T Consensus       107 ~~i~~l~~~~~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~  184 (302)
T PF14870_consen  107 FGITALGDGSAELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN  184 (302)
T ss_dssp             EEEEEEETTEEEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--
T ss_pred             eEEEEcCCCcEEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC
Confidence            33444344443333 445554332 233322 222334557788899999999888887666667888654333333344


Q ss_pred             ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCC-eeeEE-----ecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC
Q 010296          303 HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEE-SRLVF-----RAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKK  376 (513)
Q Consensus       303 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  376 (513)
                      ....|..|.|.|++.+......|.|++=+.... .....     ......+..+++.+++.+.+++..|.+. .....++
T Consensus       185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGk  263 (302)
T PF14870_consen  185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGK  263 (302)
T ss_dssp             SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTS
T ss_pred             ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCc
Confidence            567899999999998888889999988772221 11111     1223347888999988877777777553 3445554


Q ss_pred             e
Q 010296          377 P  377 (513)
Q Consensus       377 ~  377 (513)
                      .
T Consensus       264 t  264 (302)
T PF14870_consen  264 T  264 (302)
T ss_dssp             S
T ss_pred             c
Confidence            3

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.09  E-value=2.4  Score=37.97  Aligned_cols=218  Identities=13%  Similarity=0.160  Sum_probs=117.0

Q ss_pred             CeEEEEEecCCCeEEEEeCCCcEEEEeCC------CC-ceeEEeec-----ccCCeEEEEeeCC-------------CeE
Q 010296          264 PVSCLTFRQGTSELFSGSFDRTVKIWNAE------DR-AYISTLFG-----HQSEVLTIDCLRK-------------ERV  318 (513)
Q Consensus       264 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~-------------~~~  318 (513)
                      .-+.|+++|.+.+-++....+...+||..      .. ..+..+..     .....+.+.|+..             ..+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45789999999888888888899999986      12 22333331     1234566666531             247


Q ss_pred             EEEeCCCcEEEEecCCCee------eEEecC--CCCeeEEEeecC--C-e-EEEEeCCCCEEEEecCCCCeeEEeecCCC
Q 010296          319 LTVGRDRSMQLWKVPEESR------LVFRAP--ASSLECCCFISN--D-E-FLSGSDDGSIELWSLLRKKPVYIVKNAHP  386 (513)
Q Consensus       319 ~~~~~d~~i~iwd~~~~~~------~~~~~~--~~~v~~~~~~~~--~-~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  386 (513)
                      +.++.+|+|.-|...-...      +.+...  ..-...+++...  + . +++--..++|.+||-.-.+..  +.....
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~--~~g~F~  181 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP--LPGSFI  181 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc--CCCCcc
Confidence            8899999999998633222      222211  222234444432  2 2 445556788888874433221  010000


Q ss_pred             cccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCc
Q 010296          387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPL  466 (513)
Q Consensus       387 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~  466 (513)
                                 +..+      .....+..+......-.|+-..-.++++.=+.|..-|.|-+||+.-.  .++.+..-..
T Consensus       182 -----------DP~i------PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~  242 (336)
T TIGR03118       182 -----------DPAL------PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGR  242 (336)
T ss_pred             -----------CCCC------CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCc
Confidence                       0000      00000000000111112333333444445556666789999998764  4444443333


Q ss_pred             ccEEEEEEeec------CCCEEEEEecCCCcccccccCCCccc
Q 010296          467 VGFVNSLAFAK------SGQFLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       467 ~~~v~~v~~sp------~~~~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                      ....+.|+..|      .|.+|+-- --||+|..+|...+.-.
T Consensus       243 LNaPWG~a~APa~FG~~sg~lLVGN-FGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       243 LNAPWGLAIAPESFGSLSGALLVGN-FGDGTINAYDPQSGAQL  284 (336)
T ss_pred             ccCCceeeeChhhhCCCCCCeEEee-cCCceeEEecCCCCcee
Confidence            44556777755      45555555 55999999998766533

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.92  E-value=1.1  Score=45.39  Aligned_cols=74  Identities=8%  Similarity=0.056  Sum_probs=52.5

Q ss_pred             eEEEEEEe--cCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCC-----CEEEEEecCCCcccccc
Q 010296          424 WVSSVTVC--GGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSG-----QFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       424 ~i~~~~~s--~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-----~~l~~~~~~dg~v~~W~  496 (513)
                      .++.++++  ...++||+++....|.||-+..............+...|.+|+|-++.     ...+++++-.|.|.+|+
T Consensus       165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             ceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            48899998  778899999988889998876531222222233466779999998764     23455558999998887


Q ss_pred             c
Q 010296          497 H  497 (513)
Q Consensus       497 ~  497 (513)
                      .
T Consensus       245 I  245 (717)
T PF08728_consen  245 I  245 (717)
T ss_pred             E
Confidence            7

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.90  E-value=4.8  Score=40.62  Aligned_cols=180  Identities=14%  Similarity=0.097  Sum_probs=94.6

Q ss_pred             CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeec-
Q 010296          180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF-  258 (513)
Q Consensus       180 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-  258 (513)
                      --.|+||++.....-..+|                   .|. .+..+.|+.+. .|++...+|+++||++.. ..+... 
T Consensus        63 ~~~I~If~~sG~lL~~~~w-------------------~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~s  120 (829)
T KOG2280|consen   63 RPYIRIFNISGQLLGRILW-------------------KHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNS  120 (829)
T ss_pred             ceeEEEEeccccchHHHHh-------------------cCC-CeeeecccCCc-eEEEEeccceEEEeecch-hhhcccc
Confidence            3568888876544333222                   222 68889999655 567778899999999753 322221 


Q ss_pred             ---cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec---ccCCeEEEEeeCCCeEEEEeCC-----C-c
Q 010296          259 ---PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG---HQSEVLTIDCLRKERVLTVGRD-----R-S  326 (513)
Q Consensus       259 ---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~d-----~-~  326 (513)
                         ......|..+.|..+|  +++-..+|.+.+-+-.....+..+..   ..-+-.|-...++++-.++..+     + .
T Consensus       121 vg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~  198 (829)
T KOG2280|consen  121 VGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLH  198 (829)
T ss_pred             cccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhc
Confidence               2223345555555566  44444456665544322222222221   1111122222233211111100     0 1


Q ss_pred             EEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          327 MQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      +..-+....+...+......+..+.++|+.. ++.-...|.|.+-+....+.+..+..
T Consensus       199 ~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  199 ICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             ccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            1111111222223334456788889998876 66778899999998888777776653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.74  E-value=4.1  Score=39.03  Aligned_cols=146  Identities=14%  Similarity=0.135  Sum_probs=82.5

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-----CCCEEEEEeCCCcE
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-----DGRYLASGGLDRHI  244 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~s~~~dg~i  244 (513)
                      +...|++|+..|.++||+........    . ..+          ....-..+|..|..-+     ....||+ -.-..+
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~----~-~ll----------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl   99 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQP----E-DLL----------LETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKL   99 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCC----c-cEE----------EEEecCCcEEEEEeccccCCCCcceEEE-ecCCEE
Confidence            44689999999999999985433211    0 000          0122345677776532     2234444 345677


Q ss_pred             EEEeCCC--cc-------eeeeccCcCC--CeEEEEEec----C-CCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          245 HLWDTRI--QE-------HIQAFPGHRG--PVSCLTFRQ----G-TSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       245 ~vwd~~~--~~-------~~~~~~~~~~--~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      .||.+..  +.       .+..+..|.-  ....+++-|    . ..+|++-+.||.+.+|+-+.......+.. ---..
T Consensus       100 ~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPg  178 (418)
T PF14727_consen  100 SVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPG  178 (418)
T ss_pred             EEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCc
Confidence            7887621  11       1122222322  223333333    2 35688899999999999776544444432 22223


Q ss_pred             EEEeeCC-CeEEEEeCCCcEEEEec
Q 010296          309 TIDCLRK-ERVLTVGRDRSMQLWKV  332 (513)
Q Consensus       309 ~~~~~~~-~~~~~~~~d~~i~iwd~  332 (513)
                      .+.|.+. ..|++++....+.-|..
T Consensus       179 Pl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  179 PLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             CeEEeecCCEEEEecCceeEEEecH
Confidence            4556553 57888888888888865

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.69  E-value=0.37  Score=45.04  Aligned_cols=161  Identities=17%  Similarity=0.209  Sum_probs=92.4

Q ss_pred             eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee-EEee-cccC----CeE-EEEeeCCC-eEEEEeCCC
Q 010296          254 HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI-STLF-GHQS----EVL-TIDCLRKE-RVLTVGRDR  325 (513)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~-~~~~----~v~-~~~~~~~~-~~~~~~~d~  325 (513)
                      .+..+......|..+-..|+|+.|+.-+. ..+.++++.+.... +.+. ...+    .|+ .+.....+ .++++..||
T Consensus       212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG  290 (733)
T COG4590         212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG  290 (733)
T ss_pred             hhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence            34445555667888899999999887665 67888888764431 1221 1111    111 11112233 577888999


Q ss_pred             cEEEE-ecCCCeee------EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccC
Q 010296          326 SMQLW-KVPEESRL------VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQD  397 (513)
Q Consensus       326 ~i~iw-d~~~~~~~------~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (513)
                      .|.-| |.+.....      .+......+..+.--.+.+ |++-...|++.++.....+++..-..              
T Consensus       291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~--------------  356 (733)
T COG4590         291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA--------------  356 (733)
T ss_pred             ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh--------------
Confidence            99887 43332211      1111222333222222222 77778888888776544433322111              


Q ss_pred             cCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          398 EGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       398 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                              ...+.-+++||.+.+|++-. .|.|+++.+.+.
T Consensus       357 ------------------------~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr  388 (733)
T COG4590         357 ------------------------YQAPQLVAMSPNQAYLLSED-QGKIRLAQLENR  388 (733)
T ss_pred             ------------------------hcCcceeeeCcccchheeec-CCceEEEEecCC
Confidence                                    11267789999999988754 467999999876

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.63  E-value=0.0084  Score=55.95  Aligned_cols=148  Identities=9%  Similarity=0.090  Sum_probs=101.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEe
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      ......|-|.+.-++.++.+..+..||- .++.+..+. .++....++|..++..++ .+-..+.+.+|++.+......-
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            3445678887777888888888999984 455444443 445566788888877655 5666889999999764321111


Q ss_pred             ecccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeEEec-CCCCeeEEEeecCCeEEEEeCCCCEEEEe
Q 010296          301 FGHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLVFRA-PASSLECCCFISNDEFLSGSDDGSIELWS  371 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~dg~i~iwd  371 (513)
                      .+....-.-+.|++... ++.+...+.+.+++..+.+.....+ |...++++++.+.+..+.++.+..+.+-.
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTT  186 (615)
T ss_pred             ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhh
Confidence            11111111256777664 4466678999999998877776666 88899999999999988888777665544

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.56  E-value=1.7  Score=33.69  Aligned_cols=124  Identities=12%  Similarity=0.041  Sum_probs=75.3

Q ss_pred             EEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-----CCCEEEE
Q 010296          163 TAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-----DGRYLAS  237 (513)
Q Consensus       163 ~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~s  237 (513)
                      ..-.|......|++++.-|.|.|++.........-            ......+..-...|++|+-.+     ....|+.
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~------------~~~~i~~LNin~~italaaG~l~~~~~~D~Lli   69 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR------------QDSDISFLNINQEITALAAGRLKPDDGRDCLLI   69 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCcccccccc------------ccCceeEEECCCceEEEEEEecCCCCCcCEEEE
Confidence            44567777778999999999999987654322110            000011223355677776544     3456777


Q ss_pred             EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec---CCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296          238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ---GTSELFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      |+ ...|..||+....-+..- .-...|+++.+-.   ...-|+..+.+..|.-||....+...+.
T Consensus        70 Gt-~t~llaYDV~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   70 GT-QTSLLAYDVENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             ec-cceEEEEEcccCchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            77 457999999876654332 2346778887732   2233555555677888887665555443

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.53  E-value=3.2  Score=36.83  Aligned_cols=152  Identities=11%  Similarity=0.093  Sum_probs=91.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCccee---eeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce---
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI---QAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY---  296 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---  296 (513)
                      +..+.++  +++...+..+.-++|.|+.+...-   ..+.. .+.-.+  |.-.|++++.+..+.-+.+.|+.+.+.   
T Consensus        89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEE--EEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence            4455665  567777777788999998765432   22221 122333  344578888888777788889876432   


Q ss_pred             eEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecC---CCCeeEEEeecCCeEEEEeCCCCEEEEecC
Q 010296          297 ISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAP---ASSLECCCFISNDEFLSGSDDGSIELWSLL  373 (513)
Q Consensus       297 ~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~  373 (513)
                      ..+..........++.+ .++-..+..++-+.+.|+.......+..+   ...+.++..+++.-+++-...| +.+-|..
T Consensus       164 agrya~~~~d~~~v~IS-Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~s  241 (370)
T COG5276         164 AGRYALPGGDTHDVAIS-GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDVS  241 (370)
T ss_pred             eeeeccCCCCceeEEEe-cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eEEEecC
Confidence            33343334444455554 23444666888999999987655544433   2356777777765555554444 5666776


Q ss_pred             CCCeeEEe
Q 010296          374 RKKPVYIV  381 (513)
Q Consensus       374 ~~~~~~~~  381 (513)
                      +.+....+
T Consensus       242 ~~ssp~~~  249 (370)
T COG5276         242 GPSSPTVF  249 (370)
T ss_pred             CCCCceEe
Confidence            66544443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.52  E-value=0.94  Score=45.44  Aligned_cols=108  Identities=13%  Similarity=0.165  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEE--ecCCCeEEEEeCCCcEEEEeCCC-------
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTF--RQGTSELFSGSFDRTVKIWNAED-------  293 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~-------  293 (513)
                      .-+.-|.-++..++-+....+.|||...+.....-. ...+.|..+.|  .|+++.+++.+..+.|.+|.-..       
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence            334444445555555556689999998876443322 35678999998  56889999999999999986421       


Q ss_pred             --CceeEEe--eccc-CCeEEEEeeCCCeEEEEeCCCcEEEEec
Q 010296          294 --RAYISTL--FGHQ-SEVLTIDCLRKERVLTVGRDRSMQLWKV  332 (513)
Q Consensus       294 --~~~~~~~--~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~  332 (513)
                        -..+..+  ..++ .+|....|.++|.+++++ ++.+.|++-
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK  155 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence              1122222  2233 578888999999887665 456777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.44  E-value=4.3  Score=37.89  Aligned_cols=158  Identities=13%  Similarity=0.168  Sum_probs=85.2

Q ss_pred             CCeEEEEee-CCCeEEEEeCCCc------EEEEecCCC----eee------EEecCCC--------CeeEEEeecCCeEE
Q 010296          305 SEVLTIDCL-RKERVLTVGRDRS------MQLWKVPEE----SRL------VFRAPAS--------SLECCCFISNDEFL  359 (513)
Q Consensus       305 ~~v~~~~~~-~~~~~~~~~~d~~------i~iwd~~~~----~~~------~~~~~~~--------~v~~~~~~~~~~~~  359 (513)
                      +.+..+.+. .++.+++.+.++.      ++.+.+...    ..+      .+.....        ....+++.+++.|+
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            445677777 4667888887777      666655431    111      1111111        33467776777666


Q ss_pred             EEeC-C------CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec
Q 010296          360 SGSD-D------GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG  432 (513)
Q Consensus       360 ~~~~-d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  432 (513)
                      .+++ +      ..|..++.. ++.+..+...........                      .......+..+-+|+++|
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~----------------------~~~~~~~N~G~E~la~~~  156 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDAN----------------------GTSGRRNNRGFEGLAVSP  156 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccC----------------------ccccccCCCCeEEEEECC
Confidence            5554 4      467777755 666555532211100000                      001123334489999999


Q ss_pred             CCCEEEEecC-----CC---------cEEEEEeCCCC--ccee-eeeecC------cccEEEEEEeecCCCEEEEE
Q 010296          433 GSDLAASGAG-----NG---------SVRLWAIESET--KDIQ-PLYNLP------LVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       433 ~~~~l~~g~~-----dg---------~v~vwd~~~~~--~~~~-~~~~~~------~~~~v~~v~~sp~~~~l~~~  485 (513)
                      +|+.|+++..     |+         .++|+.+....  .... ..+...      ....|+.+.+-+++++|+.=
T Consensus       157 dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  157 DGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             CCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence            9996666532     22         15666655331  1122 222222      34668999999999988753

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.43  E-value=2.3  Score=45.63  Aligned_cols=160  Identities=15%  Similarity=0.199  Sum_probs=92.0

Q ss_pred             EeCCCcEEEEeCCCCceeEEeecccCCeEEEEee-C-C-------CeEEEEeCCCcEEEEecCC----Cee------eEE
Q 010296          280 GSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL-R-K-------ERVLTVGRDRSMQLWKVPE----ESR------LVF  340 (513)
Q Consensus       280 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~-~-------~~~~~~~~d~~i~iwd~~~----~~~------~~~  340 (513)
                      .+.|+.+.+|+..++.....+.+....|..+... | .       ..+++.+.--.|.++-+.-    ...      ...
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i  174 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI  174 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence            3458899999999977777776666666666542 2 1       2345555555566654421    111      122


Q ss_pred             ecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCC-C
Q 010296          341 RAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHS-S  419 (513)
Q Consensus       341 ~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~  419 (513)
                      ......|.|+....+|+++.++.||.|+-.-.....  .-+.             ..-.++....+....+.+..+.. .
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~--gWf~-------------~rc~Kiclt~s~ls~lvPs~~~~~~  239 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAED--GWFG-------------SRCRKICLTKSVLSSLVPSLLSVPG  239 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccC--chhh-------------cccccccCchhHHHHhhhhhhcCCC
Confidence            234567888888889998888888844322221110  0000             00000111111111111111111 2


Q ss_pred             CCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          420 SAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       420 ~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .+..+|..+++.....+|.+-+..|+|.+|++...
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence            45667999999999999999999999999999873

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.43  E-value=1.7  Score=43.71  Aligned_cols=108  Identities=10%  Similarity=0.166  Sum_probs=70.6

Q ss_pred             CeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee-cccCCeEEEEeeC--CC-eEEEEeCCCcEEEEecCC-----
Q 010296          264 PVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF-GHQSEVLTIDCLR--KE-RVLTVGRDRSMQLWKVPE-----  334 (513)
Q Consensus       264 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~-~~~~~~~d~~i~iwd~~~-----  334 (513)
                      .+.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|..  ++ .+++.|..+.|.+|.-..     
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            33444444444444455556689999999887543322 3578899999964  55 566999999999985421     


Q ss_pred             C-------eeeEEec-CCCCeeEEEeecCCeEEEEeCCCCEEEEec
Q 010296          335 E-------SRLVFRA-PASSLECCCFISNDEFLSGSDDGSIELWSL  372 (513)
Q Consensus       335 ~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~  372 (513)
                      .       +.+.... ...+|....|.++|.+++|+. +.+.|++-
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence            1       1111222 336788999999999888764 45788774

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.39  E-value=0.55  Score=40.70  Aligned_cols=83  Identities=17%  Similarity=0.217  Sum_probs=54.7

Q ss_pred             ECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010296          167 LSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHL  246 (513)
Q Consensus       167 ~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v  246 (513)
                      +..++.+|++.+.+|.+++||+.+++.+..-.+-..++.....     .-......|..+.++.+|.-|++-+ +|..+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~-----~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~   91 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPV-----SDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS   91 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhccccc-----ccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE
Confidence            4457889999999999999999998765432111111211100     0004567799999998888777765 588999


Q ss_pred             EeCCCccee
Q 010296          247 WDTRIQEHI  255 (513)
Q Consensus       247 wd~~~~~~~  255 (513)
                      |+..-+.-+
T Consensus        92 y~~~L~~W~  100 (219)
T PF07569_consen   92 YSPDLGCWI  100 (219)
T ss_pred             eccccceeE
Confidence            987644433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.31  E-value=0.2  Score=29.91  Aligned_cols=31  Identities=19%  Similarity=0.121  Sum_probs=26.1

Q ss_pred             CCeEEEEECCCC---CeEEEEeCCceEEEEeCCC
Q 010296          160 QSVTAVALSEDD---SKGFSASKDGSILHWDVSS  190 (513)
Q Consensus       160 ~~V~~~~~s~~~---~~l~t~~~dg~v~iwd~~~  190 (513)
                      ++|.+|.|+|..   .+|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            578999999854   4888888889999999985

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.11  E-value=0.13  Score=30.63  Aligned_cols=33  Identities=15%  Similarity=0.097  Sum_probs=26.5

Q ss_pred             cEEEEEEeecCCC---EEEEEecCCCcccccccCCCc
Q 010296          468 GFVNSLAFAKSGQ---FLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       468 ~~v~~v~~sp~~~---~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      +.|.++.|||...   +|+.+ -.-|.|.++|...+.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~-E~~g~vhi~D~R~~f   36 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWA-EHQGRVHIVDTRSNF   36 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEE-ccCCeEEEEEcccCc
Confidence            4689999998654   77777 888999999998644

It contains a characteristic DLL sequence motif.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=94.02  E-value=7.3  Score=39.00  Aligned_cols=252  Identities=12%  Similarity=0.139  Sum_probs=120.8

Q ss_pred             CCCCCeEEEEeCCceEEEEeCCCCcc-ccccCCChhhhccCCCCCCCCCCCCC-cccEEEEEEcCCC-CEEEEEeC--CC
Q 010296          168 SEDDSKGFSASKDGSILHWDVSSGKG-VKYLWPSEEVLKSHGAKDPQGRATKQ-SKHILALAVSSDG-RYLASGGL--DR  242 (513)
Q Consensus       168 s~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~-~~l~s~~~--dg  242 (513)
                      ..++..++.+..+|.+....+..... +..                  ...+. .....++.+..++ .+|+.|+.  |+
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i------------------~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds  280 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISI------------------TYLGTLCSIASSLTYLKNGGDYLFVGSEFGDS  280 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEE------------------EEEEE--S-ESEEEEESTT--EEEEEESSS-E
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEE------------------EEcCCcCChhheEEEEcCCCEEEEEEEecCCc
Confidence            55677888999999988877765331 100                  00111 3345566666554 36777765  45


Q ss_pred             cEEEEeCCCcceeeeccCcCCCeEEEEEecC----CC------eEEEEe---CCCcEEEEeCCCCce--eEEeecc--cC
Q 010296          243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG----TS------ELFSGS---FDRTVKIWNAEDRAY--ISTLFGH--QS  305 (513)
Q Consensus       243 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~------~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~--~~  305 (513)
                      .+..|....-+.+..+. .-++|..+++.+.    ..      .|++++   .+|.+++..-.-+-.  .......  -.
T Consensus       281 ~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~  359 (504)
T PF10433_consen  281 QLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVT  359 (504)
T ss_dssp             EEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEE
T ss_pred             EEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCce
Confidence            55556644555666666 5578999988532    12      566554   467888875321111  1111112  22


Q ss_pred             CeEEEEeeC-CCeEEEEeCCCcEEEEecC---CCeee-EEe--cC--CCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC
Q 010296          306 EVLTIDCLR-KERVLTVGRDRSMQLWKVP---EESRL-VFR--AP--ASSLECCCFISNDEFLSGSDDGSIELWSLLRKK  376 (513)
Q Consensus       306 ~v~~~~~~~-~~~~~~~~~d~~i~iwd~~---~~~~~-~~~--~~--~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  376 (513)
                      .++.+.... +..++..+....-+++.+.   ....+ ...  +-  ...-..+....++.++=.+..+ |++.+...++
T Consensus       360 ~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~-i~l~~~~~~~  438 (504)
T PF10433_consen  360 GIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKG-IRLIDLEDGK  438 (504)
T ss_dssp             EEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSE-EEEEESSSTS
T ss_pred             EEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCe-EEEEECCCCe
Confidence            344444332 1344444444455555553   12221 110  11  1112223333355566454444 7888877777


Q ss_pred             eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCc
Q 010296          377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETK  456 (513)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~  456 (513)
                      ....+.....                                    ..|.+.++..  .+++.+..++.+.++.+.....
T Consensus       439 ~~~~w~~~~~------------------------------------~~I~~a~~~~--~~v~v~~~~~~~~~~~~~~~~~  480 (504)
T PF10433_consen  439 LTQEWKPPAG------------------------------------SIIVAASIND--PQVLVALSGGELVYFELDDNKI  480 (504)
T ss_dssp             EEEEEE-TTS---------------------------------------SEEEESS--SEEEEEE-TTEEEEEEEETTEE
T ss_pred             EEEEEeCCCC------------------------------------CeEEEEEECC--CEEEEEEeCCcEEEEEEECCce
Confidence            7666543221                                    1155555543  4677777788899999987622


Q ss_pred             ceeeeeec--CcccEEEEEEeec
Q 010296          457 DIQPLYNL--PLVGFVNSLAFAK  477 (513)
Q Consensus       457 ~~~~~~~~--~~~~~v~~v~~sp  477 (513)
                      ........  .....|.|+..+|
T Consensus       481 ~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  481 SVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             EEEEE----EE-SS-EEEEE---
T ss_pred             eeeeeccccccCCCceEEEEeCC
Confidence            21211110  1356788888776

...

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.87  E-value=0.76  Score=43.77  Aligned_cols=84  Identities=11%  Similarity=0.167  Sum_probs=59.9

Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCC-eEEEEEecC-C----------------Ce-EE
Q 010296          218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGP-VSCLTFRQG-T----------------SE-LF  278 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~-~----------------~~-l~  278 (513)
                      .....+.+|+.+|.+++.|+...-|.|.++|+.++..++.+++.... +.-+..... .                .+ ++
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            34556899999999998888877899999999999999888875433 211111111 1                11 23


Q ss_pred             EEeCCCcEEEEeCCCCceeEEee
Q 010296          279 SGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       279 ~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      -+-.-|.|-||.++++..+..+.
T Consensus       385 yaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EeccCCeEEEEecCCCCEEEEEE
Confidence            45668899999999888777664

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=93.75  E-value=0.032  Score=51.55  Aligned_cols=12  Identities=33%  Similarity=0.526  Sum_probs=7.8

Q ss_pred             CCCCEEEEEeCC
Q 010296          230 SDGRYLASGGLD  241 (513)
Q Consensus       230 ~~~~~l~s~~~d  241 (513)
                      |+..=||+|+.|
T Consensus       190 PDSTDFVCGTLD  201 (458)
T PF10446_consen  190 PDSTDFVCGTLD  201 (458)
T ss_pred             CCcccccCCCcC
Confidence            466667777654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.69  E-value=0.48  Score=41.03  Aligned_cols=28  Identities=14%  Similarity=0.229  Sum_probs=24.1

Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCCCcee
Q 010296          270 FRQGTSELFSGSFDRTVKIWNAEDRAYI  297 (513)
Q Consensus       270 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~  297 (513)
                      +..++.+|++.+.+|.+++||+.+++.+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~   45 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAV   45 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence            4567889999999999999999987764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.64  E-value=8.4  Score=41.67  Aligned_cols=135  Identities=12%  Similarity=0.177  Sum_probs=85.0

Q ss_pred             CCCcEEEEeCCCcceeeeccCcCCCeEEEEE--------ecCCCeEEEEeCCCcEEEEeCC----CCce---e--EEeec
Q 010296          240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTF--------RQGTSELFSGSFDRTVKIWNAE----DRAY---I--STLFG  302 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg~i~iwd~~----~~~~---~--~~~~~  302 (513)
                      .|+.+.+|+.+++.....+.+-...|..+..        -|.=++++..+.--.|.++-+.    ++..   .  .++..
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            4788999999998877777776666766654        2233445544444456665432    1111   1  12223


Q ss_pred             ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCe------e-----------------eEEe-cCCCCeeEEEeecCCe-
Q 010296          303 HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES------R-----------------LVFR-APASSLECCCFISNDE-  357 (513)
Q Consensus       303 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~------~-----------------~~~~-~~~~~v~~~~~~~~~~-  357 (513)
                      ....|.++....+|+++.+|.||.|+-.-.....      +                 ..+. .+..+|..+.+..... 
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I  256 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI  256 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence            4557889998889999999999955433221110      0                 0122 3355778887766554 


Q ss_pred             EEEEeCCCCEEEEecCC
Q 010296          358 FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       358 ~~~~~~dg~i~iwd~~~  374 (513)
                      +.+-+..|+|.+|++..
T Consensus       257 lY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  257 LYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeeccCceEEEEEccC
Confidence            55888999999999976

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.47  E-value=2.1  Score=39.95  Aligned_cols=30  Identities=13%  Similarity=0.223  Sum_probs=24.2

Q ss_pred             CeeEEEeecCCeEEEEeCCCCEEEEecCCCC
Q 010296          346 SLECCCFISNDEFLSGSDDGSIELWSLLRKK  376 (513)
Q Consensus       346 ~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  376 (513)
                      ..+.++|.|+|.++++...|.|++++ ..+.
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~   32 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGS   32 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCc
Confidence            35788999999988888899999999 4443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.47  E-value=3.3  Score=39.07  Aligned_cols=142  Identities=6%  Similarity=0.040  Sum_probs=87.8

Q ss_pred             EEEeeCCCeEEEEeCCCcEEEEecCCCee---e-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          309 TIDCLRKERVLTVGRDRSMQLWKVPEESR---L-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       309 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~---~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      .+-|...++.+.+...|.+.-|-......   . .-....++|.++.|+++++ +++--.+..|.+++....++......
T Consensus        27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~  106 (657)
T KOG2377|consen   27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ  106 (657)
T ss_pred             ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence            34444445555555555566665543221   1 1223345899999999997 66778899999998754433322221


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                      .+                                 ......|...+|+.+ .-+|.-+..| |.+|.+....+.++....
T Consensus       107 ~c---------------------------------k~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks  151 (657)
T KOG2377|consen  107 EC---------------------------------KTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKS  151 (657)
T ss_pred             Hh---------------------------------ccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhh
Confidence            11                                 111222888899877 4455555444 888888776555555554


Q ss_pred             cCcccEEEEEEeecCCCEEEEEec
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVG  487 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~  487 (513)
                        +.-.|+-..|+++-+.++.+++
T Consensus       152 --~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  152 --HNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             --cccCccEEEEccccceEeeecc
Confidence              6667888899999887776655

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.31  E-value=7.7  Score=36.99  Aligned_cols=149  Identities=13%  Similarity=0.041  Sum_probs=89.8

Q ss_pred             EEEEEeCCCcEEEEeCCCcceeeeccCc--CCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeeccc-CCeEEE
Q 010296          234 YLASGGLDRHIHLWDTRIQEHIQAFPGH--RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQ-SEVLTI  310 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~  310 (513)
                      .++.+..+|.|.-.|..++..+.....-  ...+.+-.+..+|+ |+.++.++.++.+|..+++.+....... ..+..-
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            4555577888888888888865433322  12333333333555 8888889999999999998887776544 111222


Q ss_pred             EeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCC----CCeeEEEeecCCeEEEEeC--CCCEEEEecCCCCeeEEeec
Q 010296          311 DCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPA----SSLECCCFISNDEFLSGSD--DGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       311 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~--dg~i~iwd~~~~~~~~~~~~  383 (513)
                      ....++.++..+.++.+.-.+..++.........    ..+........+.++.+..  ++.+.-.+..++......+.
T Consensus       149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~  227 (370)
T COG1520         149 PVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKV  227 (370)
T ss_pred             cEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeee
Confidence            2223566666667788888888877765322211    1111111133445555555  66777788888887776543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.31  E-value=7.7  Score=36.98  Aligned_cols=192  Identities=10%  Similarity=0.061  Sum_probs=107.7

Q ss_pred             eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q 010296          173 KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ  252 (513)
Q Consensus       173 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~  252 (513)
                      .++++..+|.|.-.|..++..+.....                 ......+.+-.+..+|+ |+.++.++.++.+|..+|
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~-----------------~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G  131 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPL-----------------LGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTG  131 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccC-----------------cCcceeccCceEEeCCe-EEEecccceEEEEECCCC
Confidence            455557788888888888775532200                 00011111112222565 777888899999999889


Q ss_pred             ceeeeccCcC-CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC---CeEEEEeeCCCeEEEEeC--CCc
Q 010296          253 EHIQAFPGHR-GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS---EVLTIDCLRKERVLTVGR--DRS  326 (513)
Q Consensus       253 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~--d~~  326 (513)
                      +.+..+.... ..+..-....++ .++.++.++.+...+..++..+........   .+..-....++.++.+..  ++.
T Consensus       132 ~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~  210 (370)
T COG1520         132 TLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGI  210 (370)
T ss_pred             cEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcce
Confidence            8887776554 111111222233 344444789999999988887766443221   111111123455665555  556


Q ss_pred             EEEEecCCCeeeEEecCCCC-----e------eEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          327 MQLWKVPEESRLVFRAPASS-----L------ECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~-----v------~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      +.-+++.++...........     +      ..-...-++.+..++.++.+...+..+++.+..+..
T Consensus       211 ~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         211 LYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             EEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            77777766665522111111     1      111111233356777888899999999998888764

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.25  E-value=1.5  Score=41.33  Aligned_cols=120  Identities=8%  Similarity=0.112  Sum_probs=80.5

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      ...++|.+|.||+|.+.||+--.+.+|.+++.........+     .          ......+..|....|+.+ .-+|
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~-----~----------~~ck~k~~~IlGF~W~~s-~e~A  127 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY-----T----------QECKTKNANILGFCWTSS-TEIA  127 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH-----H----------HHhccCcceeEEEEEecC-eeEE
Confidence            45789999999999999999999999999998544433221     0          012233456899999866 5566


Q ss_pred             EEeCCCcEEEEeCCC-cceeeeccCcCCCeEEEEEecCCCeEEEEe--CCCcEEEEeCCC
Q 010296          237 SGGLDRHIHLWDTRI-QEHIQAFPGHRGPVSCLTFRQGTSELFSGS--FDRTVKIWNAED  293 (513)
Q Consensus       237 s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~  293 (513)
                      .-+..| +-+|.... ...++..+.|...|+-..|.++.+.++.++  ..+++.=+.+++
T Consensus       128 ~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  128 FITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             EEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            666444 66766543 344556677888999999999887755443  233443344443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.15  E-value=5.7  Score=34.99  Aligned_cols=153  Identities=11%  Similarity=-0.002  Sum_probs=98.5

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE--
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST--  299 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--  299 (513)
                      .-..++-.|||..-+++...+.|--.|..+|+....--+....-..|..-|++..-++-+.. .|.-.|-++.....-  
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            35567888999988898888999999999998776655556666788888888766654433 566666655543221  


Q ss_pred             -eecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCC-CCeeEEEeecCCeEE-EEeCCCCEEEEecCCC
Q 010296          300 -LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPA-SSLECCCFISNDEFL-SGSDDGSIELWSLLRK  375 (513)
Q Consensus       300 -~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~dg~i~iwd~~~~  375 (513)
                       ............|.+.|.+...+..|.---.|..+....++..+. .....++..|+|.+. +.-.+..|-..|..++
T Consensus       142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~  220 (353)
T COG4257         142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG  220 (353)
T ss_pred             ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence             122334567778888887775555444333444444443443332 345678888998744 4445666766676665

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=93.11  E-value=5.2  Score=38.98  Aligned_cols=31  Identities=19%  Similarity=0.355  Sum_probs=26.1

Q ss_pred             eEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          424 WVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       424 ~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .|.+++..+..++|++.+.+|.|.+|++..+
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            3999999999999999999999999999853

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.98  E-value=6.4  Score=35.07  Aligned_cols=154  Identities=14%  Similarity=0.121  Sum_probs=91.9

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      .+.+..+.++.  .+...+..+.-++|.|+.+......+                 ......+--+++..  .|++..++
T Consensus        86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~-----------------~~lnt~gyaygv~v--sGn~aYVa  144 (370)
T COG5276          86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLI-----------------GFLNTDGYAYGVYV--SGNYAYVA  144 (370)
T ss_pred             hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCccee-----------------ccccCCceEEEEEe--cCCEEEEe
Confidence            34455566654  56666667778999999877654322                 00011122344444  48898888


Q ss_pred             eCCCcEEEEeCCCcc---eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce---eEEeecccCCeEEEEe
Q 010296          239 GLDRHIHLWDTRIQE---HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY---ISTLFGHQSEVLTIDC  312 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~  312 (513)
                      ..+.-+.+.|+.+..   +...+.......+.++.+  |++-+.+..|+-+.+.|+.....   +.... ....+.++..
T Consensus       145 dlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~v  221 (370)
T COG5276         145 DLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSV  221 (370)
T ss_pred             eccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEe
Confidence            877778888886543   333444344444566665  66788888999999999976533   22222 3336677776


Q ss_pred             eCCCeEEEEeCCCcEEEEecCCCee
Q 010296          313 LRKERVLTVGRDRSMQLWKVPEESR  337 (513)
Q Consensus       313 ~~~~~~~~~~~d~~i~iwd~~~~~~  337 (513)
                      +++..+++.. +.-+.+-|..+.+.
T Consensus       222 sdnr~y~vvy-~egvlivd~s~~ss  245 (370)
T COG5276         222 SDNRAYLVVY-DEGVLIVDVSGPSS  245 (370)
T ss_pred             cCCeeEEEEc-ccceEEEecCCCCC
Confidence            6554444433 44466666665553

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.78  E-value=10  Score=36.90  Aligned_cols=54  Identities=13%  Similarity=0.126  Sum_probs=37.5

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce--eeecc-----CcCCCeEEEEEecCC
Q 010296          221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH--IQAFP-----GHRGPVSCLTFRQGT  274 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~-----~~~~~v~~~~~~~~~  274 (513)
                      ...+.|+|.|+|++|++--..|.|++++..++..  +..+.     ...+....|+|+|+-
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3478899999998777765569999998655432  22221     135678899999873

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.76  E-value=1.7  Score=36.17  Aligned_cols=30  Identities=23%  Similarity=0.164  Sum_probs=25.8

Q ss_pred             eEEEEEEecCC------CEEEEecCCCcEEEEEeCC
Q 010296          424 WVSSVTVCGGS------DLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       424 ~i~~~~~s~~~------~~l~~g~~dg~v~vwd~~~  453 (513)
                      .+..++|||.|      -+|++.+.+|.|.||.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            59999999955      4788999999999999764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.65  E-value=5.5  Score=33.51  Aligned_cols=151  Identities=12%  Similarity=0.043  Sum_probs=83.9

Q ss_pred             CCCEEEEEeC--CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296          231 DGRYLASGGL--DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEV  307 (513)
Q Consensus       231 ~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  307 (513)
                      +|.++.+.+.  ...|++|++.+++.+..-+-....+..=-...-+.++. ..-.+|...++|.++.+++..+. ..+.-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            4556666553  35699999999987765442212222222222233333 33457888999999888877664 44555


Q ss_pred             EEEEeeCCCeEEEEeCCCcEEEEecCCCeee---EEecCC---CCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEe
Q 010296          308 LTIDCLRKERVLTVGRDRSMQLWKVPEESRL---VFRAPA---SSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       308 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~---~~~~~~---~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                      +.++.. +..++.+....+++.-|..+-...   ......   ..+.-+.|.....++-.-....|...+..+|+.+..+
T Consensus       134 WgLt~d-~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~wi  212 (262)
T COG3823         134 WGLTSD-DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWI  212 (262)
T ss_pred             eeeecC-CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence            555543 234555555566666665543221   111112   2233344443333444445566777788888887776


Q ss_pred             ec
Q 010296          382 KN  383 (513)
Q Consensus       382 ~~  383 (513)
                      ..
T Consensus       213 dl  214 (262)
T COG3823         213 DL  214 (262)
T ss_pred             Ec
Confidence            54

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.60  E-value=11  Score=36.63  Aligned_cols=81  Identities=9%  Similarity=0.050  Sum_probs=54.9

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEe---------CCCcceee---ec-------c-CcCCCeEEEEEecCC---Ce
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWD---------TRIQEHIQ---AF-------P-GHRGPVSCLTFRQGT---SE  276 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd---------~~~~~~~~---~~-------~-~~~~~v~~~~~~~~~---~~  276 (513)
                      .-.|..+..++.|..++-.+.+|.+.++=         ++.|+.+.   ++       . ...-.+..++|+|+.   ..
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            45688899999999999888898766543         12332211   11       1 111235667899975   67


Q ss_pred             EEEEeCCCcEEEEeCCCCceeEEe
Q 010296          277 LFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       277 l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      |..-+.|+.|++|++.....+...
T Consensus       183 L~iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             EEEEecCcEEEEEecCCcchhhcc
Confidence            888889999999999876665443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.55  E-value=5.9  Score=33.66  Aligned_cols=102  Identities=14%  Similarity=0.203  Sum_probs=63.0

Q ss_pred             CEEEEEeCCCcEEEEeCC--CcceeeeccCcCCCeEEEEEecCCCeEEEEeCC---C---cEEEE---eCC--CCceeE-
Q 010296          233 RYLASGGLDRHIHLWDTR--IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD---R---TVKIW---NAE--DRAYIS-  298 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw---d~~--~~~~~~-  298 (513)
                      ..|+.+...+.|.+|++.  ..+....|.. -+.|..+.++..|++|+|--.+   .   .+++|   ...  ...++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            445444556789999988  3345666664 4789999999999999986432   2   56665   211  111111 


Q ss_pred             Eeec---------------------ccCCeEEEEeeC-CCeEEEEeCCCcEEEEecCCCe
Q 010296          299 TLFG---------------------HQSEVLTIDCLR-KERVLTVGRDRSMQLWKVPEES  336 (513)
Q Consensus       299 ~~~~---------------------~~~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~  336 (513)
                      .+.|                     -..++.+++..| .|.+++++ ++.+.+|.+....
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence            1111                     234567777777 56666655 4678888876443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.34  E-value=1.4  Score=36.68  Aligned_cols=30  Identities=20%  Similarity=0.257  Sum_probs=25.0

Q ss_pred             ccEEEEEEcCCC------CEEEEEeCCCcEEEEeCC
Q 010296          221 KHILALAVSSDG------RYLASGGLDRHIHLWDTR  250 (513)
Q Consensus       221 ~~v~~~~~s~~~------~~l~s~~~dg~i~vwd~~  250 (513)
                      ..|..++|||.|      -+|++.+.++.|.||...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            379999999954      378888999999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.98  E-value=12  Score=35.88  Aligned_cols=148  Identities=14%  Similarity=0.094  Sum_probs=84.4

Q ss_pred             eEEEEeeCCCeEEEEeCCCcEEE-EecCCCe-eeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCe-----eE
Q 010296          307 VLTIDCLRKERVLTVGRDRSMQL-WKVPEES-RLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKP-----VY  379 (513)
Q Consensus       307 v~~~~~~~~~~~~~~~~d~~i~i-wd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~-----~~  379 (513)
                      ...+...+++.++..+..|.+.. |+--... ..........+..+.+.+++.++..+..|.+.. ....++.     ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~  319 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFE  319 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCccccccee
Confidence            34455567777777777776554 3322111 223334455678888989988877777777544 3333331     11


Q ss_pred             EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCccee
Q 010296          380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQ  459 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~  459 (513)
                      ....                                   ......++.+.|.+++..+++| ..|.|.... ..+ +..+
T Consensus       320 ~~~~-----------------------------------~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G-~tW~  361 (398)
T PLN00033        320 EADI-----------------------------------KSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGG-KSWK  361 (398)
T ss_pred             eccc-----------------------------------CCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCC-ccee
Confidence            1111                                   0011228889999887766655 466555543 333 4444


Q ss_pred             eeee-cCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296          460 PLYN-LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW  495 (513)
Q Consensus       460 ~~~~-~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W  495 (513)
                      .... -........+.|.++++.++++  .+|.|..|
T Consensus       362 ~~~~~~~~~~~ly~v~f~~~~~g~~~G--~~G~il~~  396 (398)
T PLN00033        362 RDKGADNIAANLYSVKFFDDKKGFVLG--NDGVLLRY  396 (398)
T ss_pred             EccccCCCCcceeEEEEcCCCceEEEe--CCcEEEEe
Confidence            3321 1234568899998887766665  77777555

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.83  E-value=18  Score=37.67  Aligned_cols=91  Identities=11%  Similarity=0.049  Sum_probs=48.5

Q ss_pred             CCeEEEEEecCCCeEEEEeCCCcEEEEeCCC-CceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEe
Q 010296          263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAED-RAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFR  341 (513)
Q Consensus       263 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~  341 (513)
                      ..|..|.++|+|.+|+..|..| |.|..+.. ......+.+....+.|-.+.=+..++.                    .
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~--------------------~  143 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT--------------------S  143 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc--------------------C
Confidence            4688889999999999888755 44444432 111112222222333322221221111                    1


Q ss_pred             cCCCCeeEEEeecCC----eEEEEeCCCCEEEEecCC
Q 010296          342 APASSLECCCFISND----EFLSGSDDGSIELWSLLR  374 (513)
Q Consensus       342 ~~~~~v~~~~~~~~~----~~~~~~~dg~i~iwd~~~  374 (513)
                      .+...|..+.|+|.+    .|++-+.|+++|+||+..
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            222345566777653    366777777777777765

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.38  E-value=11  Score=34.07  Aligned_cols=220  Identities=14%  Similarity=0.165  Sum_probs=117.6

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCC------Cc-ceeeeccC-----cCCCeEEEEEecCCC------------e
Q 010296          221 KHILALAVSSDGRYLASGGLDRHIHLWDTR------IQ-EHIQAFPG-----HRGPVSCLTFRQGTS------------E  276 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~  276 (513)
                      ..-+.|+++|.+.+-++....+...+||..      .. .++.++..     .....+.+.|+....            .
T Consensus        23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            346789999999888888788999999986      11 22333332     224567777764322            2


Q ss_pred             EEEEeCCCcEEEEeCCCCce-----eEEee-cccCCeE-EEEeeC--CC-eEEEE-eCCCcEEEEecCCCeeeE---Eec
Q 010296          277 LFSGSFDRTVKIWNAEDRAY-----ISTLF-GHQSEVL-TIDCLR--KE-RVLTV-GRDRSMQLWKVPEESRLV---FRA  342 (513)
Q Consensus       277 l~~~~~dg~i~iwd~~~~~~-----~~~~~-~~~~~v~-~~~~~~--~~-~~~~~-~~d~~i~iwd~~~~~~~~---~~~  342 (513)
                      ++.++.||+|.-|...-...     ...+. ...+.|+ .+++..  .+ .|+++ -..++|-+||-.-.....   +..
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D  182 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID  182 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence            67788999999998543221     12222 1123342 344432  22 34433 357888888754332211   111


Q ss_pred             CC----CCeeEEEe------------ecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296          343 PA----SSLECCCF------------ISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH  405 (513)
Q Consensus       343 ~~----~~v~~~~~------------~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  405 (513)
                      +.    .....+..            .++++ =+.|..-|.|-+||+ .+..++++.....                   
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~-------------------  242 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGR-------------------  242 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCc-------------------
Confidence            10    00001111            11111 223344567888885 4555555532211                   


Q ss_pred             CCCCCCCCCCcCCCCCcceEEEEEEec------CCCEEEEecCCCcEEEEEeCCCCcceeeeeecC----cccEEEEEEe
Q 010296          406 SENGNLNPGSYHSSSAYSWVSSVTVCG------GSDLAASGAGNGSVRLWAIESETKDIQPLYNLP----LVGFVNSLAF  475 (513)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~----~~~~v~~v~~  475 (513)
                                      ....+.|+..|      .+.+|+---.||+|..||..++. .+-.+....    ....++.|+|
T Consensus       243 ----------------LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~-~~g~L~~~~G~pi~i~GLWgL~f  305 (336)
T TIGR03118       243 ----------------LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA-QLGQLLDPDNHPVKVDGLWSLTF  305 (336)
T ss_pred             ----------------ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc-eeeeecCCCCCeEEecCeEEeee
Confidence                            11145555544      45677766689999999998873 222222211    1234678888


Q ss_pred             ec
Q 010296          476 AK  477 (513)
Q Consensus       476 sp  477 (513)
                      -.
T Consensus       306 Gn  307 (336)
T TIGR03118       306 GN  307 (336)
T ss_pred             CC
Confidence            65

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.34  E-value=12  Score=34.78  Aligned_cols=102  Identities=10%  Similarity=0.112  Sum_probs=47.2

Q ss_pred             CCCeEEEEeCC-----CcEEEEeCCCCcee---EEeecccCCe--EEEEeeCCCeE-EEEeC-----CCcEEEEecCCCe
Q 010296          273 GTSELFSGSFD-----RTVKIWNAEDRAYI---STLFGHQSEV--LTIDCLRKERV-LTVGR-----DRSMQLWKVPEES  336 (513)
Q Consensus       273 ~~~~l~~~~~d-----g~i~iwd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~-~~~~~-----d~~i~iwd~~~~~  336 (513)
                      ++..++.|+.+     ..+..||+.+....   ..+.....+.  .+++.. ++.+ +.++.     ...+..||+.+..
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            44555666654     35777787765531   2221111111  222233 4444 45553     2467888887665


Q ss_pred             eeEEec-CC-CCeeEEEeecCCe-EEEEeCCCC----EEEEecCCC
Q 010296          337 RLVFRA-PA-SSLECCCFISNDE-FLSGSDDGS----IELWSLLRK  375 (513)
Q Consensus       337 ~~~~~~-~~-~~v~~~~~~~~~~-~~~~~~dg~----i~iwd~~~~  375 (513)
                      -..... +. ......+...+++ ++.|+.++.    +.+||..+.
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            333221 11 1122222233444 566765542    346666554

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.06  E-value=13  Score=34.63  Aligned_cols=120  Identities=19%  Similarity=0.305  Sum_probs=68.8

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCce------EEEEeCCCCc-cccccCCChhhhccCCCCCCCC-CCCCCcccEEEEEEc
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGS------ILHWDVSSGK-GVKYLWPSEEVLKSHGAKDPQG-RATKQSKHILALAVS  229 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~------v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s  229 (513)
                      .-+.++.|.+.|++..+++.+.+|.      +..+.+.... ....+    ..........+.. .+..-.-..-+|++.
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~~~G~~~~~~~~D~Egi~~~   93 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGV----TILDMIPLRDPDGQPFPKNGLDPEGIAVP   93 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccce----EeccceeccCCCCCcCCcCCCChhHeEEe
Confidence            3577899999976667777777777      6666655411 11000    0000000011100 011111135578887


Q ss_pred             CCCCEEEEEeCC------CcEEEEeCCCcceeeecc---------------CcCCCeEEEEEecCCCeEEEEeC
Q 010296          230 SDGRYLASGGLD------RHIHLWDTRIQEHIQAFP---------------GHRGPVSCLTFRQGTSELFSGSF  282 (513)
Q Consensus       230 ~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~  282 (513)
                      +++.++++.=.+      ..|+.++.. |+.+..+.               .....+.+|+++|+|+.|+++..
T Consensus        94 ~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   94 PDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             cCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            788887776666      788888866 65543331               13456889999999997776543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.99  E-value=6  Score=39.92  Aligned_cols=70  Identities=17%  Similarity=0.269  Sum_probs=49.4

Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeC
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNA  291 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  291 (513)
                      ....++++.-+|.+..++.++.||.|++|+........... ...+-..+.|...|  |+++..|..+.-|.-
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeec
Confidence            34558889999999999999999999999976544322221 22334456676655  777777887777764

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.72  E-value=4.1  Score=34.60  Aligned_cols=113  Identities=14%  Similarity=0.167  Sum_probs=66.9

Q ss_pred             eeEEEeecCCeEEEEeCCCCEEEEecCC--CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296          347 LECCCFISNDEFLSGSDDGSIELWSLLR--KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW  424 (513)
Q Consensus       347 v~~~~~~~~~~~~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  424 (513)
                      ...++....+.++.+...+.|.+|++.+  ..++..+...                                      +.
T Consensus        20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--------------------------------------~~   61 (215)
T PF14761_consen   20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV--------------------------------------GR   61 (215)
T ss_pred             cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch--------------------------------------hh
Confidence            3344444545555557788899999883  3455555432                                      22


Q ss_pred             EEEEEEecCCCEEEEecCC---C---cEEEE---EeC-CCCccee--------------------eeeecCcccEEEEEE
Q 010296          425 VSSVTVCGGSDLAASGAGN---G---SVRLW---AIE-SETKDIQ--------------------PLYNLPLVGFVNSLA  474 (513)
Q Consensus       425 i~~~~~s~~~~~l~~g~~d---g---~v~vw---d~~-~~~~~~~--------------------~~~~~~~~~~v~~v~  474 (513)
                      |..+.++..|+||+|-=.+   .   .+|+|   ... ....++.                    .+..+|...++.+++
T Consensus        62 V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~cia  141 (215)
T PF14761_consen   62 VLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIA  141 (215)
T ss_pred             eeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEE
Confidence            8899999999999986322   2   56664   222 1111111                    111223455778888


Q ss_pred             eecCCCEEEEEecCCCcccccccCC
Q 010296          475 FAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       475 ~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      -.|-..-|++|+  +.++.+|....
T Consensus       142 CC~~tG~LlVg~--~~~l~lf~l~~  164 (215)
T PF14761_consen  142 CCPVTGNLLVGC--GNKLVLFTLKY  164 (215)
T ss_pred             ecCCCCCEEEEc--CCEEEEEEEEE
Confidence            888766666662  34788886543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.72  E-value=7.2  Score=42.28  Aligned_cols=32  Identities=13%  Similarity=0.162  Sum_probs=27.5

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCC
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSS  190 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~  190 (513)
                      ......++|+|.-.++|.+...|.|++|-...
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccc
Confidence            44677899999999999999999999987654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.35  E-value=18  Score=34.88  Aligned_cols=142  Identities=11%  Similarity=0.183  Sum_probs=83.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCcc-----eeeeccCcCCCeEEEEEec----CCCeEEEEeCCCcEEEEeCCC--Cc-----
Q 010296          232 GRYLASGGLDRHIHLWDTRIQE-----HIQAFPGHRGPVSCLTFRQ----GTSELFSGSFDRTVKIWNAED--RA-----  295 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~~--~~-----  295 (513)
                      ...+++|+..|.++||+.....     .+...+ -..+|..+..-.    .....++.-.-..+.||.+..  +.     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            4589999999999999985433     111111 345777776532    223344445677888888732  11     


Q ss_pred             --eeEEeeccc--CCeEEEEeeC----C--CeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-eEEEEeCC
Q 010296          296 --YISTLFGHQ--SEVLTIDCLR----K--ERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND-EFLSGSDD  364 (513)
Q Consensus       296 --~~~~~~~~~--~~v~~~~~~~----~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d  364 (513)
                        .+..+..|.  .....+++-|    .  ..+.+-+.||.+.+|+-..-....+....--...+++.+.. .|++++.+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence              122222232  2233344333    2  24557889999999997655433333332223345566554 58899999


Q ss_pred             CCEEEEecCC
Q 010296          365 GSIELWSLLR  374 (513)
Q Consensus       365 g~i~iwd~~~  374 (513)
                      ..+..|....
T Consensus       196 ~~l~~Yky~~  205 (418)
T PF14727_consen  196 WTLECYKYQD  205 (418)
T ss_pred             eeEEEecHHH
Confidence            9999887643

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.32  E-value=12  Score=33.03  Aligned_cols=194  Identities=8%  Similarity=-0.024  Sum_probs=111.7

Q ss_pred             CeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEe--
Q 010296          264 PVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFR--  341 (513)
Q Consensus       264 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~--  341 (513)
                      .-..++-.|+|..-+++...+.|--.|..+++....-.+.......|..-|++....+....-|.-++.++.....+.  
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp  142 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP  142 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecc
Confidence            446678889998889998889998899999987776666666677788888876665555446766776665544333  


Q ss_pred             --cCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCC
Q 010296          342 --APASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSS  419 (513)
Q Consensus       342 --~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  419 (513)
                        ..........|.+.|.+...+..|.---.|..+ ..+.++...                                   
T Consensus       143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaP-----------------------------------  186 (353)
T COG4257         143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAP-----------------------------------  186 (353)
T ss_pred             cccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccC-----------------------------------
Confidence              334566777888888754222222111111111 111111111                                   


Q ss_pred             CCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          420 SAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       420 ~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                       ....-+.|+..|+|.+-++.-.++.|-..|..++......... .....-..+--+|.|+.-++. ...+.+..+|
T Consensus       187 -qG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~-~~~~gsRriwsdpig~~witt-wg~g~l~rfd  260 (353)
T COG4257         187 -QGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPN-ALKAGSRRIWSDPIGRAWITT-WGTGSLHRFD  260 (353)
T ss_pred             -CCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCC-cccccccccccCccCcEEEec-cCCceeeEeC
Confidence             1111567888899988887777777777776655211111111 011223344445666665554 4444444443

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=90.20  E-value=15  Score=38.82  Aligned_cols=168  Identities=13%  Similarity=0.121  Sum_probs=93.1

Q ss_pred             EEEEeCCCCceeEEeecccC----CeEEEEeeCCC--eEEEEe------------CCCcEEEEecCCCeeeEEecCCCCe
Q 010296          286 VKIWNAEDRAYISTLFGHQS----EVLTIDCLRKE--RVLTVG------------RDRSMQLWKVPEESRLVFRAPASSL  347 (513)
Q Consensus       286 i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~--~~~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~v  347 (513)
                      |++.|..+++.+..+....+    .+..+.|+...  .+++++            .+|.++.|++-.........|...+
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            67777776665544432222    34455555432  233322            2345677766433222112222221


Q ss_pred             --eEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296          348 --ECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV  425 (513)
Q Consensus       348 --~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  425 (513)
                        .-.+..|....+.++....+++|++...++++......                                   ....|
T Consensus       935 ~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~-----------------------------------~p~~I  979 (1205)
T KOG1898|consen  935 PGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKF-----------------------------------IPNRI  979 (1205)
T ss_pred             CccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhcc-----------------------------------CceEE
Confidence              22344455446666677889999999988877665433                                   11227


Q ss_pred             EEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcc
Q 010296          426 SSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRL  492 (513)
Q Consensus       426 ~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v  492 (513)
                      +.+++.  +..+++|...-.|.++-.+.....+..+..-+....|+++.+-..+. +|.+ ..=|.+
T Consensus       980 s~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~t-vaga-DrfGNi 1042 (1205)
T KOG1898|consen  980 SSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDT-VAGA-DRFGNI 1042 (1205)
T ss_pred             EEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCc-eeec-cccCcE
Confidence            777764  45788887666777777766655666666655666777776664443 4433 333444

>PLN02153 epithiospecifier protein

Probab=90.07  E-value=17  Score=34.21  Aligned_cols=66  Identities=17%  Similarity=0.265  Sum_probs=34.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCcceee--eccC---cCCC-eEEEEEecCCCeEEEEeCC-----------CcEEE
Q 010296          231 DGRYLASGGLD-----RHIHLWDTRIQEHIQ--AFPG---HRGP-VSCLTFRQGTSELFSGSFD-----------RTVKI  288 (513)
Q Consensus       231 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~---~~~~-v~~~~~~~~~~~l~~~~~d-----------g~i~i  288 (513)
                      ++++++.|+.+     ..+.+||+.+.+-..  .+..   .... -.+++ .-+++.++.|+.+           ..|.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence            46667777653     357888987654332  2210   1111 12222 2345556666643           24778


Q ss_pred             EeCCCCcee
Q 010296          289 WNAEDRAYI  297 (513)
Q Consensus       289 wd~~~~~~~  297 (513)
                      ||+.+.+-.
T Consensus       164 yd~~~~~W~  172 (341)
T PLN02153        164 YNIADGKWV  172 (341)
T ss_pred             EECCCCeEe
Confidence            898876543

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.73  E-value=23  Score=37.46  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=47.1

Q ss_pred             EECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 010296          166 ALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH  245 (513)
Q Consensus       166 ~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  245 (513)
                      ++..-++.|+.|+.+|.+.+|.+.........-    ...  ...  .....-+..+|..|...+.-.++++-+ |+.|.
T Consensus        21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~----~~~--~~~--~~~~~~~kk~i~~l~~~~~~~~ll~l~-dsqi~   91 (877)
T KOG2063|consen   21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVE----LVT--ETV--KFEKEFSKKPINKLLVCASLELLLILS-DSQIA   91 (877)
T ss_pred             HHHHhCCEEEEEcCCCcEEEEeccccccccchh----hhc--chh--HHhhhhccchhHHHhhcchhcchheec-CCcce
Confidence            334467899999999999999987654322110    000  000  000111256677777776655555554 67788


Q ss_pred             EEeCCCcce
Q 010296          246 LWDTRIQEH  254 (513)
Q Consensus       246 vwd~~~~~~  254 (513)
                      ++++.+-+.
T Consensus        92 ~~~l~~~~~  100 (877)
T KOG2063|consen   92 VHKLPELEP  100 (877)
T ss_pred             eeecCcccc
Confidence            888776554

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.59  E-value=1.6  Score=40.99  Aligned_cols=159  Identities=18%  Similarity=0.189  Sum_probs=95.7

Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCccee-eeccCc-CC----CeE-EEEEecCCCeEEEEeCCCcEEEE-e
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGH-RG----PVS-CLTFRQGTSELFSGSFDRTVKIW-N  290 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~-~~----~v~-~~~~~~~~~~l~~~~~dg~i~iw-d  290 (513)
                      ....|..+-..|+|+.|..-+. ..+.|+++.+.... +.+-.. .+    .|+ .+..-..|.-|++++.||.|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            3456777888999998887664 67888887654321 111100 11    122 12223355668888999999888 4


Q ss_pred             CCCC-c----eeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCC
Q 010296          291 AEDR-A----YISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDD  364 (513)
Q Consensus       291 ~~~~-~----~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d  364 (513)
                      .+.+ .    .++.++-....+..+.--.+. -|++-...|++.++.....+.+.+......+..+.++|.+..+..-..
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~~  377 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSEDQ  377 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeecC
Confidence            4332 1    122222222233322221122 356777888888887766666555555556777899999876667778


Q ss_pred             CCEEEEecCCCCee
Q 010296          365 GSIELWSLLRKKPV  378 (513)
Q Consensus       365 g~i~iwd~~~~~~~  378 (513)
                      |.|+++.+.+..+-
T Consensus       378 gki~~~~l~Nr~Pe  391 (733)
T COG4590         378 GKIRLAQLENRNPE  391 (733)
T ss_pred             CceEEEEecCCCCC
Confidence            88999988876543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.45  E-value=0.54  Score=47.91  Aligned_cols=116  Identities=14%  Similarity=0.241  Sum_probs=68.3

Q ss_pred             eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE-----------EEcC
Q 010296          162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL-----------AVSS  230 (513)
Q Consensus       162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------~~s~  230 (513)
                      |.-+-|-++..++..+-.++.|++..+......        .+.            +|...++.+           .+||
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~--------l~r------------sHs~~~~d~a~~~~g~~~l~~lSp  245 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALRS--------LFR------------SHSQRVTDMAFFAEGVLKLASLSP  245 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHHH--------HHH------------hcCCCcccHHHHhhchhhheeeCC
Confidence            333334446677778888899988777654431        112            232222222           3799


Q ss_pred             CCCEEEEEeCCCcEEEEeCC-Cc----ceeeeccCcC-CCeEEEEEecCC---------CeEEEE-eCCCcEEEEeCCCC
Q 010296          231 DGRYLASGGLDRHIHLWDTR-IQ----EHIQAFPGHR-GPVSCLTFRQGT---------SELFSG-SFDRTVKIWNAEDR  294 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~-~~----~~~~~~~~~~-~~v~~~~~~~~~---------~~l~~~-~~dg~i~iwd~~~~  294 (513)
                      ||+.|+.++.||.++.|.+. +|    .++...+.|. .+-.|..|+.+.         .+++++ ..+..+++|....-
T Consensus       246 DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w  325 (1283)
T KOG1916|consen  246 DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW  325 (1283)
T ss_pred             CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence            99999999999999999764 22    3445556666 333333343321         223333 34567888887666


Q ss_pred             cee
Q 010296          295 AYI  297 (513)
Q Consensus       295 ~~~  297 (513)
                      +|+
T Consensus       326 ~Cl  328 (1283)
T KOG1916|consen  326 QCL  328 (1283)
T ss_pred             hhh
Confidence            655

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=89.39  E-value=32  Score=36.43  Aligned_cols=71  Identities=14%  Similarity=0.112  Sum_probs=49.1

Q ss_pred             cceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee---------e-------eecCcccEEEEEEeecCCCEEEEE
Q 010296          422 YSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP---------L-------YNLPLVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       422 ~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~---------~-------~~~~~~~~v~~v~~sp~~~~l~~~  485 (513)
                      ...|.+++...-+.+++..-.||+|.++|-.+.......         +       ..++...++..++|||++-.++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            345888888888889999999999999998765211111         1       111222345568999999888877


Q ss_pred             ecCCCccc
Q 010296          486 VGQEPRLG  493 (513)
Q Consensus       486 ~~~dg~v~  493 (513)
                       ..+|.+.
T Consensus       339 -~~~~~~~  345 (753)
T PF11635_consen  339 -DEDGKTK  345 (753)
T ss_pred             -ecCCCce
Confidence             7777744

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.87  E-value=31  Score=35.54  Aligned_cols=202  Identities=14%  Similarity=0.191  Sum_probs=102.0

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC----------------ccccccCCChh-hhccCC----CCCC
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG----------------KGVKYLWPSEE-VLKSHG----AKDP  212 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~----------------~~~~~~~~~~~-~~~~~~----~~~~  212 (513)
                      .+-.-...|.+.+||.|.+.++....+..|.+++-.-.                +.+..=|...+ .++..+    ...|
T Consensus       107 ivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdp  186 (1243)
T COG5290         107 IVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDP  186 (1243)
T ss_pred             hhccccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCC
Confidence            33345788999999999998887777788888763211                11111111110 111111    0111


Q ss_pred             CCCCCCCcccE-------EEEEEcCCCCEEEEEeCC----CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe
Q 010296          213 QGRATKQSKHI-------LALAVSSDGRYLASGGLD----RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS  281 (513)
Q Consensus       213 ~~~~~~~~~~v-------~~~~~s~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  281 (513)
                      .....-..+.+       .-+.|--|..+.+++...    ..++||.- .|+.-..-...++.-..+.|-|+|..+++-.
T Consensus       187 tmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~  265 (1243)
T COG5290         187 TMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIG  265 (1243)
T ss_pred             CCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeecc-ccccccccCCcccchhccccccCCceeeeec
Confidence            11111111112       234454455555554321    23455542 2222111112233344589999999999877


Q ss_pred             CCC-----cEEEEeCCC---CceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEe
Q 010296          282 FDR-----TVKIWNAED---RAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCF  352 (513)
Q Consensus       282 ~dg-----~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~  352 (513)
                      .||     .|.++..+.   |..-.. .+....+..++|+-...+++....+.|++|...+-.-. ........+.-+.|
T Consensus       266 td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkw  344 (1243)
T COG5290         266 TDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKW  344 (1243)
T ss_pred             cCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeee
Confidence            554     344444322   221111 12333456667766666667777888999987654332 22233345666788


Q ss_pred             ecCCe
Q 010296          353 ISNDE  357 (513)
Q Consensus       353 ~~~~~  357 (513)
                      +|...
T Consensus       345 hpe~~  349 (1243)
T COG5290         345 HPEEK  349 (1243)
T ss_pred             ccccC
Confidence            88753

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.65  E-value=3.7  Score=41.64  Aligned_cols=90  Identities=21%  Similarity=0.281  Sum_probs=47.5

Q ss_pred             CCCCeEEEEeCCceEEEEeCCCCc----ccccc-CCChhhhccCCCCCCCC--CCCCCcccEEEEEEcC----CCCEEEE
Q 010296          169 EDDSKGFSASKDGSILHWDVSSGK----GVKYL-WPSEEVLKSHGAKDPQG--RATKQSKHILALAVSS----DGRYLAS  237 (513)
Q Consensus       169 ~~~~~l~t~~~dg~v~iwd~~~~~----~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~----~~~~l~s  237 (513)
                      ++...|+.+..||.+.........    ..... ..............+..  ........+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            466788888899998888776421    11111 11111111111100000  1112234456666666    6789999


Q ss_pred             EeCCCcEEEEeCCCcceeeec
Q 010296          238 GGLDRHIHLWDTRIQEHIQAF  258 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~  258 (513)
                      .+.|+++++||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.40  E-value=1.1  Score=26.13  Aligned_cols=29  Identities=14%  Similarity=0.236  Sum_probs=21.2

Q ss_pred             ccEEEEEEeecCCCEEEEEecCC--Cccccc
Q 010296          467 VGFVNSLAFAKSGQFLIAGVGQE--PRLGRW  495 (513)
Q Consensus       467 ~~~v~~v~~sp~~~~l~~~~~~d--g~v~~W  495 (513)
                      .+.-....|||||++|+-++..+  |...||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            44567789999999999886776  666555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]

Probab=87.74  E-value=0.51  Score=47.00  Aligned_cols=6  Identities=17%  Similarity=0.163  Sum_probs=2.6

Q ss_pred             CCCCCC
Q 010296           23 QDPFFA   28 (513)
Q Consensus        23 ~~~~~~   28 (513)
                      .|.|+.
T Consensus       867 gW~fL~  872 (960)
T KOG1189|consen  867 GWSFLN  872 (960)
T ss_pred             Ceeeec
Confidence            344443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.61  E-value=2.8  Score=42.54  Aligned_cols=71  Identities=18%  Similarity=0.238  Sum_probs=45.0

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCC----cceee-----------eccC-----------cCCCeEEEEEec----CCCeEEE
Q 010296          230 SDGRYLASGGLDRHIHLWDTRI----QEHIQ-----------AFPG-----------HRGPVSCLTFRQ----GTSELFS  279 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~----~~~~~-----------~~~~-----------~~~~v~~~~~~~----~~~~l~~  279 (513)
                      ++...|+.+..||.+.......    +....           .+.+           ....+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667788888899888887654    11111           0111           123455666666    6788999


Q ss_pred             EeCCCcEEEEeCCCCceeEEe
Q 010296          280 GSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       280 ~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      .+.|++|++||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.17  E-value=2  Score=24.99  Aligned_cols=30  Identities=17%  Similarity=0.148  Sum_probs=20.3

Q ss_pred             ccCCCeEEEEECCCCCeEEE-EeCC--ceEEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFS-ASKD--GSILHW  186 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t-~~~d--g~v~iw  186 (513)
                      ...+.-.+..|||||++|+- +..+  |...||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34567788999999998884 4455  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.10  E-value=17  Score=30.69  Aligned_cols=109  Identities=7%  Similarity=-0.099  Sum_probs=58.8

Q ss_pred             CCCeEEEEeC--CCcEEEEeCCCCceeEEeecccCCeEE--EEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCee
Q 010296          273 GTSELFSGSF--DRTVKIWNAEDRAYISTLFGHQSEVLT--IDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLE  348 (513)
Q Consensus       273 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~  348 (513)
                      ++.++.+.+.  ...|++||+.+++.+....-....+..  +.-..+......=.++.-..+|..+-+.+-...-.+.-+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            4455556554  347999999999877654322222211  111112222244457777888887766553333334444


Q ss_pred             EEEeecCCeEEEEeCCCCEEEEecCCCCeeEEee
Q 010296          349 CCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       349 ~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      .++.... .++.+....+++.-|..+...+.++.
T Consensus       135 gLt~d~~-~LimsdGsatL~frdP~tfa~~~~v~  167 (262)
T COG3823         135 GLTSDDK-NLIMSDGSATLQFRDPKTFAELDTVQ  167 (262)
T ss_pred             eeecCCc-ceEeeCCceEEEecCHHHhhhcceEE
Confidence            4443222 36666666677777776655444443

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=86.71  E-value=18  Score=32.75  Aligned_cols=93  Identities=12%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe------CCCcEEEEeCCCCceeEEee----cccCCeEEEE
Q 010296          242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS------FDRTVKIWNAEDRAYISTLF----GHQSEVLTID  311 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~  311 (513)
                      ..|++||..+.+....-.+-.+.|++|.|..+.+.++.|.      ....+..||+.+......-.    .-.++|..+.
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence            4699999888777666666778899999986666666653      35578889987765422221    1246788887


Q ss_pred             eeC-C-CeEE-EEe-C--CCcEEEEecCC
Q 010296          312 CLR-K-ERVL-TVG-R--DRSMQLWKVPE  334 (513)
Q Consensus       312 ~~~-~-~~~~-~~~-~--d~~i~iwd~~~  334 (513)
                      +.. + ..++ ++. .  ...|..||-..
T Consensus        96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   96 FISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             eeccCCceEEEeceecCCCceEEEEcCCc
Confidence            754 2 2444 332 2  33466665443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.10  E-value=31  Score=32.63  Aligned_cols=188  Identities=14%  Similarity=0.155  Sum_probs=105.6

Q ss_pred             cCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC----CCe---EEEEe-CC---CcEEEEecCC--Ceee
Q 010296          272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR----KER---VLTVG-RD---RSMQLWKVPE--ESRL  338 (513)
Q Consensus       272 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~---~~~~~-~d---~~i~iwd~~~--~~~~  338 (513)
                      |...+++.....+-+.+||+.. +.+..+.  .+.++.+....    ++.   +++++ .+   .+|++|.+..  +...
T Consensus        66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            4456788888889999999965 4555553  23444443321    332   34443 22   5699998753  3222


Q ss_pred             EEec-------CCCCeeEEEee--c-CCe--EEEEeCCCCEEEEecC---CCC----eeEEeecCCCcccCCCCcccCcC
Q 010296          339 VFRA-------PASSLECCCFI--S-NDE--FLSGSDDGSIELWSLL---RKK----PVYIVKNAHPLLDGLKNFEQDEG  399 (513)
Q Consensus       339 ~~~~-------~~~~v~~~~~~--~-~~~--~~~~~~dg~i~iwd~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                      ....       ....+..+|+.  + +|.  .++...+|.+..|.+.   .+.    .++.+....              
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--------------  208 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--------------  208 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--------------
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--------------
Confidence            2211       11235566654  3 343  4577888988888774   232    344444322              


Q ss_pred             ccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcc-eeeeee---cCcccEEEEEEe
Q 010296          400 KISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKD-IQPLYN---LPLVGFVNSLAF  475 (513)
Q Consensus       400 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~-~~~~~~---~~~~~~v~~v~~  475 (513)
                                              .+-.|.......+|+.|-++--|+-|+....... ...+..   ......|-.|++
T Consensus       209 ------------------------Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlal  264 (381)
T PF02333_consen  209 ------------------------QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLAL  264 (381)
T ss_dssp             -------------------------EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEE
T ss_pred             ------------------------cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEE
Confidence                                    2888888888889999998877777776533211 122211   113456777777


Q ss_pred             ec--CC-CEEEEEecCCCcccccccCCC
Q 010296          476 AK--SG-QFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       476 sp--~~-~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      -.  ++ .||++++-.+++..+|+....
T Consensus       265 y~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  265 YYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             EecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            53  44 477777677789999987654

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN02153 epithiospecifier protein

Probab=86.07  E-value=30  Score=32.48  Aligned_cols=65  Identities=14%  Similarity=0.168  Sum_probs=33.2

Q ss_pred             CCCEEEEEeCC-------CcEEEEeCCCcceeeeccC---cC-CCe-EEEEEecCCCeEEEEeCC-----CcEEEEeCCC
Q 010296          231 DGRYLASGGLD-------RHIHLWDTRIQEHIQAFPG---HR-GPV-SCLTFRQGTSELFSGSFD-----RTVKIWNAED  293 (513)
Q Consensus       231 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~---~~-~~v-~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~  293 (513)
                      ++.+++.|+.+       ..+.+||+.+.+-...-..   .. ... .+++. -++++++.|+.+     ..+.+||+.+
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA-VGTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE-ECCEEEEECCCCCCCccCcEEEEECCC
Confidence            35666666653       3578888877643321110   00 000 11122 245556666643     3578899887


Q ss_pred             Cce
Q 010296          294 RAY  296 (513)
Q Consensus       294 ~~~  296 (513)
                      .+.
T Consensus       111 ~~W  113 (341)
T PLN02153        111 NEW  113 (341)
T ss_pred             CEE
Confidence            654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.03  E-value=3.6  Score=24.24  Aligned_cols=41  Identities=20%  Similarity=0.202  Sum_probs=0.0

Q ss_pred             CCCCEEEEEeC-CCcEEEEeCCCcceeeeccCcCCCeEEEEEe
Q 010296          230 SDGRYLASGGL-DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR  271 (513)
Q Consensus       230 ~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  271 (513)
                      |++++|+++.. ++.|.++|..+++.+..+.. ......++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.81  E-value=25  Score=31.83  Aligned_cols=113  Identities=17%  Similarity=0.228  Sum_probs=0.0

Q ss_pred             EEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe------CCCcEEEEeCCCcceee
Q 010296          183 ILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG------LDRHIHLWDTRIQEHIQ  256 (513)
Q Consensus       183 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~vwd~~~~~~~~  256 (513)
                      |++||+.+.+-...-                   .+-.+.|++|.|..+.++++.|.      ....+..||+.+.....
T Consensus        18 lC~yd~~~~qW~~~g-------------------~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~   78 (281)
T PF12768_consen   18 LCLYDTDNSQWSSPG-------------------NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS   78 (281)
T ss_pred             EEEEECCCCEeecCC-------------------CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee


Q ss_pred             eccCc----CCCeEEEEEecCCCeEEE-----EeCCCcEEEEeCCCCceeEE-eecccCCeEEEEeeC
Q 010296          257 AFPGH----RGPVSCLTFRQGTSELFS-----GSFDRTVKIWNAEDRAYIST-LFGHQSEVLTIDCLR  314 (513)
Q Consensus       257 ~~~~~----~~~v~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~  314 (513)
                      .-.+-    .++|..+.+......=+.     ...+..|..||=.+-..+.. .......|..+.+.+
T Consensus        79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.78  E-value=4.6  Score=23.77  Aligned_cols=41  Identities=12%  Similarity=0.133  Sum_probs=0.0

Q ss_pred             cCCCeEEEEeC-CCcEEEEeCCCCceeEEeecccCCeEEEEee
Q 010296          272 QGTSELFSGSF-DRTVKIWNAEDRAYISTLFGHQSEVLTIDCL  313 (513)
Q Consensus       272 ~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  313 (513)
                      |++++|+++.. ++.|.++|..+++.+..+.. ......+.++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN02193 nitrile-specifier protein

Probab=85.43  E-value=41  Score=33.37  Aligned_cols=225  Identities=7%  Similarity=0.012  Sum_probs=0.0

Q ss_pred             CCCEEEEEeCC-------CcEEEEeCCCcceeee----ccCcCCCeEEEEEecCCCeEEEEeCC-----CcEEEEeCCCC
Q 010296          231 DGRYLASGGLD-------RHIHLWDTRIQEHIQA----FPGHRGPVSCLTFRQGTSELFSGSFD-----RTVKIWNAEDR  294 (513)
Q Consensus       231 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  294 (513)
                      ++.+++.|+.+       ..+.+||+.+.+-...    -.............-++.+.+.|+.+     ..+.+||+.+.
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC


Q ss_pred             ceeEEeec----ccCCeEEEEeeCCCeEEEEeCCCc-----EEEEecCCCeeeEEec-----CCCCeeEEEeecCCeEEE
Q 010296          295 AYISTLFG----HQSEVLTIDCLRKERVLTVGRDRS-----MQLWKVPEESRLVFRA-----PASSLECCCFISNDEFLS  360 (513)
Q Consensus       295 ~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~d~~-----i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~  360 (513)
                      +.......    ....-.++....+..++.++.++.     +..||+.+..-.....     ....-..++...+..++.
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi  334 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV  334 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE


Q ss_pred             EeCC----CCEEEEecCCCCeeEEeec---CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC
Q 010296          361 GSDD----GSIELWSLLRKKPVYIVKN---AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG  433 (513)
Q Consensus       361 ~~~d----g~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  433 (513)
                      ++.+    ..+.+||+.+.+-...-..   ..+.                                     ....+..-+
T Consensus       335 GG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R-------------------------------------~~~~~~~~~  377 (470)
T PLN02193        335 YGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER-------------------------------------SVFASAAVG  377 (470)
T ss_pred             ECCCCCccCceEEEECCCCEEEEeccCCCCCCCc-------------------------------------ceeEEEEEC


Q ss_pred             CCEEEEecCCC--------------cEEEEEeCCCCcceeeeeecC---------cccEEEEEEeecCCCEEEEEecCCC
Q 010296          434 SDLAASGAGNG--------------SVRLWAIESETKDIQPLYNLP---------LVGFVNSLAFAKSGQFLIAGVGQEP  490 (513)
Q Consensus       434 ~~~l~~g~~dg--------------~v~vwd~~~~~~~~~~~~~~~---------~~~~v~~v~~sp~~~~l~~~~~~dg  490 (513)
                      +++++.|+...              .+.+||+.+.  .+..+....         ............+..+++.|+..+.
T Consensus       378 ~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~--~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~  455 (470)
T PLN02193        378 KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL--QWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPT  455 (470)
T ss_pred             CEEEEECCccCCccccccCccceeccEEEEEcCcC--EEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCc


Q ss_pred             cccc
Q 010296          491 RLGR  494 (513)
Q Consensus       491 ~v~~  494 (513)
                      .-++
T Consensus       456 ~~~~  459 (470)
T PLN02193        456 NDRF  459 (470)
T ss_pred             cccc

>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins

Probab=85.18  E-value=0.27  Score=39.32  Aligned_cols=41  Identities=29%  Similarity=0.521  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCCCcccccCCCCCcccccccccCCHHHHHh
Q 010296           39 YDDDDIESADSEDYDDEVEKSGPEESEGEEEEEETADEKRK   79 (513)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ee~~~~~~~   79 (513)
                      ..++...+++++++++++++++++++++++++++....+.+
T Consensus       109 ~~~d~~~~e~d~ee~~dee~deeddeeee~~ee~~p~K~~~  149 (149)
T PF03066_consen  109 MEEDEESEEEDDEEDEDEEDDEEDDEEEEEEEEESPVKKSK  149 (149)
T ss_dssp             -----------------------------------------
T ss_pred             ccccccccccchhhhcccccccccccccccccccCCCccCC

They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=84.99  E-value=5.1  Score=40.99  Aligned_cols=172  Identities=15%  Similarity=0.102  Sum_probs=0.0

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT  249 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~  249 (513)
                      +-..+..|+.++.+.|+.-..+......               ..........+.++.+++..  +..|.-||++-.|--
T Consensus       546 ~~PTic~gtq~ssisissss~~s~ke~~---------------~~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~r  608 (925)
T KOG3522|consen  546 PHPTICLGTQTSSISISSSSLDSIKEVT---------------SEPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYGR  608 (925)
T ss_pred             CCCcccccCccceeEEeeccCCccccee---------------ccCCCCchhhhhhhhccccc--cccCccCCccccccC


Q ss_pred             C-----CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC---CeEEEEeeCCCeEEEE
Q 010296          250 R-----IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS---EVLTIDCLRKERVLTV  321 (513)
Q Consensus       250 ~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~  321 (513)
                      .     .+.+...+.....+|.+.+|..+   ++.++.+|.|.++...+......+..|..   .|+++.+...+.+++-
T Consensus       609 ap~gSwd~ep~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvaf  685 (925)
T KOG3522|consen  609 APSGSWDGEPNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAF  685 (925)
T ss_pred             CCCCCCCCCCccccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEE


Q ss_pred             eCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeC
Q 010296          322 GRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSD  363 (513)
Q Consensus       322 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  363 (513)
                      .....++++  .+............-.....+|.+++++.+.
T Consensus       686 asG~~~rlf--htetl~hlqd~niaT~vt~~lP~~kllsv~~  725 (925)
T KOG3522|consen  686 ASGDEERLF--HTETLWHLQDSNIATSVTVDLPFGKLLSVPG  725 (925)
T ss_pred             cCCCEEEEe--cccccCCccccccCcceeecCCCcccccCCC

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=84.91  E-value=41  Score=32.90  Aligned_cols=172  Identities=8%  Similarity=-0.013  Sum_probs=0.0

Q ss_pred             eEEeecccCCeEEEEeeCCCeEEEEeC-CCcEEEEecCCCeeeEEe--------cCCCCeeEEEeecCC-------eEEE
Q 010296          297 ISTLFGHQSEVLTIDCLRKERVLTVGR-DRSMQLWKVPEESRLVFR--------APASSLECCCFISND-------EFLS  360 (513)
Q Consensus       297 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~-------~~~~  360 (513)
                      +..+...-...+.|+|.|+++++++-. .|.|++++..+.......        .....+..++++|+-       .|.+
T Consensus        22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv  101 (454)
T TIGR03606        22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI  101 (454)
T ss_pred             EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE


Q ss_pred             Ee----------CCCCEEEEecC----CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEE
Q 010296          361 GS----------DDGSIELWSLL----RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS  426 (513)
Q Consensus       361 ~~----------~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~  426 (513)
                      ..          ....|.-|.+.    .......+-...+                                ......-.
T Consensus       102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP--------------------------------~~~~H~Gg  149 (454)
T TIGR03606       102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLP--------------------------------AGNDHNGG  149 (454)
T ss_pred             EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCC--------------------------------CCCCcCCc


Q ss_pred             EEEEecCCCEEEEecCCCc----------E--------------------EEEEeCCCCcc----------eeeeeecCc
Q 010296          427 SVTVCGGSDLAASGAGNGS----------V--------------------RLWAIESETKD----------IQPLYNLPL  466 (513)
Q Consensus       427 ~~~~s~~~~~l~~g~~dg~----------v--------------------~vwd~~~~~~~----------~~~~~~~~~  466 (513)
                      .|+|.|+|.++++.+..+.          .                    +|+.++.....          ...+..+.|
T Consensus       150 rI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~  229 (454)
T TIGR03606       150 RLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGH  229 (454)
T ss_pred             eEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEec


Q ss_pred             ccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          467 VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       467 ~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ..+. .++|.|+|++.++=.|.++-=.|.-+.++.
T Consensus       230 RNp~-Gla~dp~G~Lw~~e~Gp~~~DEiN~I~~G~  263 (454)
T TIGR03606       230 RNPQ-GLAFTPDGTLYASEQGPNSDDELNIIVKGG  263 (454)
T ss_pred             cccc-eeEECCCCCEEEEecCCCCCcEEEEeccCC

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.15  E-value=37  Score=37.08  Aligned_cols=241  Identities=12%  Similarity=0.044  Sum_probs=0.0

Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCC-CeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296          217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRG-PVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      .+.......++|+|...++|.++..|.|++|-...-+.+........ .+..+.+-...........+..+.+|......
T Consensus        32 ~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~  111 (993)
T KOG1983|consen   32 HGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT  111 (993)
T ss_pred             cCCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc


Q ss_pred             eeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeE----EEeecCCeEEEEeCCCCEEEEe
Q 010296          296 YISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLEC----CCFISNDEFLSGSDDGSIELWS  371 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~dg~i~iwd  371 (513)
                      .+.    ....+.+....+.-.++.+ ..+.+++|+..-.....+.........    ...++.-.+..--.+-.-.+|.
T Consensus       112 ~~~----~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  186 (993)
T KOG1983|consen  112 GVF----LKQEITSFVTDPPPDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLIS  186 (993)
T ss_pred             eee----cCCcceeccCCCCcchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceee


Q ss_pred             cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      +.-.. .........                                      +.+..+......+..+..- .+-+|+.
T Consensus       187 ~~~~~-~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~  226 (993)
T KOG1983|consen  187 LPDAY-LGLSLIEYE--------------------------------------SLQVLYYSPTKILIGFNRG-LVVIKDR  226 (993)
T ss_pred             ccccc-ccccccccc--------------------------------------cceeeeecCCCcceeeeee-eeeehhc


Q ss_pred             CCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccceEEEeccc
Q 010296          452 ESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIKL  512 (513)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~~~~l~~  512 (513)
                      ... .....+....+..       ++++..++++ ..||.+..|+...+.. ..+-.+.++
T Consensus       227 ~~~-~~~~~~~~~~~~~-------~~~~~~~v~~-h~Dgs~~fWd~s~g~~-~~~~~~~~~  277 (993)
T KOG1983|consen  227 ASK-YVQSAYLPNGQLE-------SRDGSHFVSY-HTDGSYAFWDVSSGKL-QIARNPVPL  277 (993)
T ss_pred             ccc-cchhhcccccccC-------ccCCceEEEE-EecCCEEeeecCCCce-eecCccccc

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=84.10  E-value=20  Score=31.56  Aligned_cols=153  Identities=11%  Similarity=0.124  Sum_probs=0.0

Q ss_pred             EEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCc
Q 010296          319 LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDE  398 (513)
Q Consensus       319 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (513)
                      ......++|.++|-..-....+......   +...+....+....--.-.+||+.+.+....-                 
T Consensus         3 ~~~~~~~~v~~~d~t~~g~s~~~~~~~~---c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~-----------------   62 (243)
T PF07250_consen    3 MALLHNNKVIMFDRTNFGPSNISLPDGR---CRDNPEDNALKFDGPAHSVEYDPNTNTFRPLT-----------------   62 (243)
T ss_pred             EeEccCCEEEEEeCCCcccccccCCCCc---cccCccccccccCceEEEEEEecCCCcEEecc-----------------


Q ss_pred             CccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec---CCCcEEEEEeCC---CCcceeeeeecCcccEEEE
Q 010296          399 GKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA---GNGSVRLWAIES---ETKDIQPLYNLPLVGFVNS  472 (513)
Q Consensus       399 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~---~dg~v~vwd~~~---~~~~~~~~~~~~~~~~v~~  472 (513)
                                          .....++.+-++-++|++|.+|+   ....|++++...   ................-.+
T Consensus        63 --------------------v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT  122 (243)
T PF07250_consen   63 --------------------VQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT  122 (243)
T ss_pred             --------------------CCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc


Q ss_pred             EEeecCCCEEEEEecCCCcccccccCCCcccceEEEecc
Q 010296          473 LAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIK  511 (513)
Q Consensus       473 v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~~~~l~  511 (513)
                      +..-|||+.|++|+....+..+|...........+.-|.
T Consensus       123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~  161 (243)
T PF07250_consen  123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLS  161 (243)
T ss_pred             ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecch

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	513
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-18
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-14
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-10
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-14
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-14
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-14
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-14
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-14
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-14
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-14
2h9l_A	329	Wdr5delta23 Length = 329		6e-14
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-14
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-14
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-14
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-14
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-14
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-14
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-14
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-14
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-14
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-13
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-13
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-13
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-13
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-13
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-13
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-13
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-13
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-13
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		8e-13
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-08
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-12
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-12
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		5e-12
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-12
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-12
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-10
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-10
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-10
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-10
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		6e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-09
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-08
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-08
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		7e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-07
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-06
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-06
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-05
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		5e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		6e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		8e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		8e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		8e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		9e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		9e-04

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 103/233 (44%), Gaps = 27/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           R L  H   V  V LS D     S S DG +  WD+++G   +                 
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR----------------- 466
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT--RIQEHI-QAFPGHRGPVSCLT 269
             R    +K +L++A S D R + S   DR I LW+T    +  I +   GHR  VSC+ 
Sbjct: 467 --RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVR 524
Query: 270 FRQGTSE--LFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTV--GRDR 325
           F   T +  + S S+D+TVK+WN  +    STL GH   V T+  +  +  L    G+D 
Sbjct: 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV-AVSPDGSLCASGGKDG 583
Query: 326 SMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPV 378
            + LW + E  +L      S +   CF  N  +L  + +  I++W L  K  V
Sbjct: 584 VVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIV 636

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 107/247 (43%), Gaps = 37/247 (14%)
Query: 132 SGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG 191
           SG   R +  +V   E  +    L  H  +V  + L E   +  S S+D ++  WD+ +G
Sbjct: 174 SGSTDRTL--KVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG 229
Query: 192 KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI 251
           + +        VL  H A                  V  DGR + SG  D  + +WD   
Sbjct: 230 QCL-------HVLMGHVAA--------------VRCVQYDGRRVVSGAYDFMVKVWDPET 268
Query: 252 QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID 311
           +  +    GH   V  L F      + SGS D ++++W+ E    I TL GHQS  LT  
Sbjct: 269 ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSG 324
Query: 312 CLRKERVLTVGR-DRSMQLWKVPEESRL-VFRAP---ASSLECCCFISNDEF-LSGSDDG 365
              K+ +L  G  D ++++W +     L   + P    S++ C  F  N  F ++ SDDG
Sbjct: 325 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDG 382
Query: 366 SIELWSL 372
           +++LW L
Sbjct: 383 TVKLWDL 389

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNA 291
           G  + SG  D  + +W     + ++   GH G V     R     + SGS DRT+K+WNA
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGSTDRTLKVWNA 186
Query: 292 EDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECC 350
           E    I TL+GH S V  +  L ++RV++  RD ++++W +     L V     +++ C 
Sbjct: 187 ETGECIHTLYGHTSTVRCMH-LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 351 CFISNDEFLSGSDDGSIELW 370
            +      +SG+ D  +++W
Sbjct: 246 QY-DGRRVVSGAYDFMVKVW 264

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 105/252 (41%), Gaps = 25/252 (9%)
Query: 127 EQLEESGRVRRVIASRVQKPEATDEF--RVLLKHRQSVTAVALSEDDSKGFSASKDGSIL 184
           + +  + R + +I  ++ + E       R L  H   V+ V +S D     S S DG++ 
Sbjct: 52  DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 185 HWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHI 244
            WD+++G   +                   R    +K +L++A SSD R + SG  D+ I
Sbjct: 112 LWDLTTGTTTR-------------------RFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 245 HLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSE--LFSGSFDRTVKIWNAEDRAYISTLF 301
            LW+T  + ++      H   VSC+ F   +S   + S  +D+ VK+WN  +    +   
Sbjct: 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 302 GHQSEVLTIDCLRKERVLTV-GRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLS 360
           GH   + T+       +    G+D    LW + E   L        +   CF  N  +L 
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 272
Query: 361 GSDDGSIELWSL 372
            +   SI++W L
Sbjct: 273 AATGPSIKIWDL 284

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 98/272 (36%), Gaps = 54/272 (19%)
Query: 235 LASGGLDRHIHLWDTRIQEHIQAFP-----GHRGPVSCLTFRQGTSELFSGSFDRTVKIW 289
           + S   D+ I +W     E     P     GH   VS +          SGS+D T+++W
Sbjct: 54  ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAPASSLE 348
           +           GH  +VL++      R +  G RD++++LW      +   +  + S  
Sbjct: 114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173
Query: 349 CCCF-----ISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISN 403
             C       SN   +S   D  +++W+L   K    +K  H                  
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHI----------------- 212
Query: 404 GHSENGNLNPGXXXXXXXXXXXXXXTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN 463
           GH+  G LN                TV     L ASG  +G   LW +       + LY 
Sbjct: 213 GHT--GYLN--------------TVTVSPDGSLCASGGKDGQAMLWDLNEG----KHLYT 252
Query: 464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495
           L     +N+L F+ +  +L A  G  P +  W
Sbjct: 253 LDGGDIINALCFSPNRYWLCAATG--PSIKIW 282

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 105/252 (41%), Gaps = 25/252 (9%)
Query: 127 EQLEESGRVRRVIASRVQKPEATDEF--RVLLKHRQSVTAVALSEDDSKGFSASKDGSIL 184
           + +  + R + +I  ++ + E       R L  H   V+ V +S D     S S DG++ 
Sbjct: 29  DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 185 HWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHI 244
            WD+++G   +                   R    +K +L++A SSD R + SG  D+ I
Sbjct: 89  LWDLTTGTTTR-------------------RFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 245 HLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSE--LFSGSFDRTVKIWNAEDRAYISTLF 301
            LW+T  + ++      H   VSC+ F   +S   + S  +D+ VK+WN  +    +   
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 302 GHQSEVLTIDCLRKERVLTV-GRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLS 360
           GH   + T+       +    G+D    LW + E   L        +   CF  N  +L 
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 249
Query: 361 GSDDGSIELWSL 372
            +   SI++W L
Sbjct: 250 AATGPSIKIWDL 261

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 98/272 (36%), Gaps = 54/272 (19%)
Query: 235 LASGGLDRHIHLWDTRIQEHIQAFP-----GHRGPVSCLTFRQGTSELFSGSFDRTVKIW 289
           + S   D+ I +W     E     P     GH   VS +          SGS+D T+++W
Sbjct: 31  ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAPASSLE 348
           +           GH  +VL++      R +  G RD++++LW      +   +  + S  
Sbjct: 91  DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 150
Query: 349 CCCF-----ISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISN 403
             C       SN   +S   D  +++W+L   K    +K  H                  
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHI----------------- 189
Query: 404 GHSENGNLNPGXXXXXXXXXXXXXXTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN 463
           GH+  G LN                TV     L ASG  +G   LW +       + LY 
Sbjct: 190 GHT--GYLN--------------TVTVSPDGSLCASGGKDGQAMLWDLNEG----KHLYT 229
Query: 464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495
           L     +N+L F+ +  +L A  G  P +  W
Sbjct: 230 LDGGDIINALCFSPNRYWLCAATG--PSIKIW 259

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 83  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 130
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 131 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 65  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 112
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 113 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 81  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 128
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 129 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 64  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 111
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 112 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 62  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 109
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 110 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 76  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 123
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 124 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 62  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 109
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 110 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 62  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 109
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 110 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 65  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 112
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 113 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 60  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 107
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 108 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 59  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 106
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 107 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 65  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 112
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 113 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 58  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 105
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 106 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 55  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 102
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 103 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 59  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 106
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +  + ++  P H  PVS + F +
Sbjct: 107 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 62  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 109
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +    ++  P H  PVS + F +
Sbjct: 110 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D +++LW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 26/217 (11%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
            SAS+D +++ W ++ G   K+  P               R+ K   HI+    +++DG 
Sbjct: 34  LSASRDKTLISWKLT-GDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
           Y  S   D+ + LWD    E  Q F GH+  V  +   +  S + SGS D+T+K+W  + 
Sbjct: 79  YALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG 138
Query: 294 RAYISTLFGHQSEVLTIDCLRKER-------VLTVGRDRSMQLWKVPE-ESRLVFRAPAS 345
           +  ++TL GH   V  +  +  E+       +++ G D+ ++ W + + +    F    S
Sbjct: 139 QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNS 197
Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
           ++       +   + S   DG I LW+L  KK  Y +
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL 234

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
            SAS+D +++ W ++ G   K+  P               R+ K   HI+    +++DG 
Sbjct: 34  LSASRDKTLISWKLT-GDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
           Y  S   D+ + LWD    E  Q F GH+  V  +   +  S + SGS D+T+K+W  + 
Sbjct: 79  YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Query: 294 RAYISTLFGHQSEVLTIDCLRKER-------VLTVGRDRSMQLWKVPE-ESRLVFRAPAS 345
           +  ++TL GH   V  +  +  E+       +++ G D+ ++ W + + +    F    S
Sbjct: 139 QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
           ++       +   + S   DG I LW+L  KK +Y +
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           + +  H+  ++ VA S D +   SAS D ++  WDVSSGK +K        LK H     
Sbjct: 62  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 109
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                  S ++     +     + SG  D  + +WD +    ++  P H  PVS + F +
Sbjct: 110 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
             S + S S+D   +IW+      + TL    +  ++        + +L    D  ++LW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
              +   L       + + C F +         +SGS+D  + +W+L  K+ V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
            SAS+D +++ W ++ G   K+  P               R+ K   HI+    +++DG 
Sbjct: 28  LSASRDKTLISWKLT-GDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 72
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
           Y  S   D+ + LWD    E  Q F GH+  V  +   +  S + SGS D+T+K+W  + 
Sbjct: 73  YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 132
Query: 294 RAYISTLFGHQSEVLTIDCLRKER-------VLTVGRDRSMQLWKVPE-ESRLVFRAPAS 345
           +  ++TL GH   V  +  +  E+       +++ G D+ ++ W + + +    F    S
Sbjct: 133 QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 191
Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
           ++       +   + S   DG I LW+L  KK +Y +
Sbjct: 192 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 228

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
            SAS+D +++ W ++ G   K+  P               R+ K   HI+    +++DG 
Sbjct: 34  LSASRDKTLISWKLT-GDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
           Y  S   D+ + LWD    E  Q F GH+  V  +   +  S + SGS D+T+K+W  + 
Sbjct: 79  YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Query: 294 RAYISTLFGHQSEVLTIDCLRKER-------VLTVGRDRSMQLWKVPE-ESRLVFRAPAS 345
           +  ++TL GH   V  +  +  E+       +++ G D+ ++ W + + +    F    S
Sbjct: 139 QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
           ++       +   + S   DG I LW+L  KK +Y +
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
            SAS+D +++ W ++ G   K+  P               R+ K   HI+    +++DG 
Sbjct: 34  LSASRDKTLISWKLT-GDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
           Y  S   D+ + LWD    E  Q F GH+  V  +   +  S + SGS D+T+K+W  + 
Sbjct: 79  YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Query: 294 RAYISTLFGHQSEVLTIDCLRKER-------VLTVGRDRSMQLWKVPE-ESRLVFRAPAS 345
           +  ++TL GH   V  +  +  E+       +++ G D+ ++ W + + +    F    S
Sbjct: 139 QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
           ++       +   + S   DG I LW+L  KK +Y +
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
            SAS+D +++ W ++ G   K+  P               R+ K   HI+    +++DG 
Sbjct: 34  LSASRDKTLISWKLT-GDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
           Y  S   D+ + LWD    E  Q F GH+  V  +   +  S + SGS D+T+K+W  + 
Sbjct: 79  YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Query: 294 RAYISTLFGHQSEVLTIDCLRKER-------VLTVGRDRSMQLWKVPE-ESRLVFRAPAS 345
           +  ++TL GH   V  +  +  E+       +++ G D+ ++ W + + +    F    S
Sbjct: 139 QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
           ++       +   + S   DG I LW+L  KK +Y +
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 24/222 (10%)
Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
            + L  H  SV  VA S D     SAS D ++  W+  +G+ ++ L              
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-------------- 217
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
                T  S  +  +A S DG+ +AS   D+ + LW+ R  + +Q   GH   V+ + FR
Sbjct: 218 -----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFR 271
Query: 272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID-CLRKERVLTVGRDRSMQLW 330
                + S S D+TVK+WN  +   + TL GH S V  +      + + +   D++++LW
Sbjct: 272 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 331 KVPEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSIELWS 371
               +        +SS+    F  + + + S SDD +++LW+
Sbjct: 331 NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 40/245 (16%)
Query: 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSE 201
           RV      +    L+ H ++V  + L  ++    + SKD SI  WD++S   +       
Sbjct: 196 RVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITL----R 249
Query: 202 EVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGH 261
            VL  H A                  V  D +Y+ S   DR I +W+T   E ++   GH
Sbjct: 250 RVLVGHRAA--------------VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295
Query: 262 RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR--KERVL 319
           +  ++CL +R     + SGS D T+++W+ E  A +  L GH+     + C+R   +R++
Sbjct: 296 KRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRCIRFDNKRIV 350
Query: 320 TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISN---------DEF--LSGSDDGSIE 368
           +   D  +++W +   + L  RAPA +L     + +         DEF  +S S D +I 
Sbjct: 351 SGAYDGKIKVWDLV--AALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTIL 408
Query: 369 LWSLL 373
           +W  L
Sbjct: 409 IWDFL 413

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 103/251 (41%), Gaps = 21/251 (8%)
Query: 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290
           D + + SG  D  I +WD    E  +   GH G V CL + +    + +GS D TV++W+
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDSTVRVWD 199
Query: 291 AEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF-------RAP 343
                 ++TL  H   VL +       ++T  +DRS+ +W +   + +         RA 
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLR-FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258
Query: 344 ASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISN 403
            + ++      +   +S S D +I++W+    + V  + N H    G+   +  +  + +
Sbjct: 259 VNVVD----FDDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHK--RGIACLQYRDRLVVS 311
Query: 404 GHSENG----NLNPGXXXXXXXXXXXXXXTVCGGSDLAASGAGNGSVRLWAIESETKDIQ 459
           G S+N     ++  G               +   +    SGA +G +++W + +      
Sbjct: 312 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA 371
Query: 460 PLYNLPLVGFV 470
           P   L L   V
Sbjct: 372 PAGTLCLRTLV 382

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           R L  H   + A+    D     SAS+DG ++ WD  +   V  +               
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI--------------- 93
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCL 268
                 +S  ++  A +  G Y+A GGLD    +++ + +E      +   GH G +SC 
Sbjct: 94  ----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR-DRSM 327
            F    +++ + S D T  +W+ E     +T  GH  +V+++      R+   G  D S 
Sbjct: 150 RFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 328 QLWKVPE-ESRLVFRAPASSLECCCFISN-DEFLSGSDDGSIELWSL 372
           +LW V E   R  F    S +   CF  N + F +GSDD +  L+ L
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 53/310 (17%)
Query: 211 DPQGRATKQSKH--------ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
           DP GR   +++         I A+   +D R L S   D  + +WD+     + A P   
Sbjct: 38  DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS 97
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR---AYIS-TLFGHQSEVLTIDCLRKERV 318
             V    +    + +  G  D    I+N + R     +S  L GH   +     L   ++
Sbjct: 98  SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 319 LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKK 376
           +T   D +  LW +    +       +       ++ D   F+SG+ D S +LW  +R+ 
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREG 216
Query: 377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGXXXXXXXXXXXXXXTVCGGSDL 436
                   H         E D   I      NGN                          
Sbjct: 217 MCRQTFTGH---------ESDINAIC--FFPNGN-------------------------A 240
Query: 437 AASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496
            A+G+ + + RL+ + ++ + +   ++  + G + S++F+KSG+ L+AG   +     W 
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICG-ITSVSFSKSGRLLLAGY-DDFNCNVWD 298
Query: 497 HLPAARNGVL 506
            L A R GVL
Sbjct: 299 ALKADRAGVL 308

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           R L  H   + A+    D     SAS+DG ++ WD  +   V  +               
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI--------------- 93
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCL 268
                 +S  ++  A +  G Y+A GGLD    +++ + +E      +   GH G +SC 
Sbjct: 94  ----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR-DRSM 327
            F    +++ + S D T  +W+ E     +T  GH  +V+++      R+   G  D S 
Sbjct: 150 RFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 328 QLWKVPE-ESRLVFRAPASSLECCCFISN-DEFLSGSDDGSIELWSL 372
           +LW V E   R  F    S +   CF  N + F +GSDD +  L+ L
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 53/310 (17%)
Query: 211 DPQGRATKQSKH--------ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
           DP GR   +++         I A+   +D R L S   D  + +WD+     + A P   
Sbjct: 38  DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS 97
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR---AYIS-TLFGHQSEVLTIDCLRKERV 318
             V    +    + +  G  D    I+N + R     +S  L GH   +     L   ++
Sbjct: 98  SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 319 LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKK 376
           +T   D +  LW +    +       +       ++ D   F+SG+ D S +LW  +R+ 
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREG 216
Query: 377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGXXXXXXXXXXXXXXTVCGGSDL 436
                   H         E D   I      NGN                          
Sbjct: 217 MCRQTFTGH---------ESDINAIC--FFPNGN-------------------------A 240
Query: 437 AASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496
            A+G+ + + RL+ + ++ + +   ++  + G + S++F+KSG+ L+AG   +     W 
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICG-ITSVSFSKSGRLLLAGY-DDFNCNVWD 298
Query: 497 HLPAARNGVL 506
            L A R GVL
Sbjct: 299 ALKADRAGVL 308

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           R L  H   + A+    D     SAS+DG ++ WD  +   V  +               
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI--------------- 93
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCL 268
                 +S  ++  A +  G Y+A GGLD    +++ + +E      +   GH G +SC 
Sbjct: 94  ----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR-DRSM 327
            F    +++ + S D T  +W+ E     +T  GH  +V+++      R+   G  D S 
Sbjct: 150 RFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 328 QLWKVPE-ESRLVFRAPASSLECCCFISN-DEFLSGSDDGSIELWSL 372
           +LW V E   R  F    S +   CF  N + F +GSDD +  L+ L
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           R L  H   + A+    D     SAS+DG ++ WD  +   V  +               
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI--------------- 93
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCL 268
                 +S  ++  A +  G Y+A GGLD    +++ + +E      +   GH G +SC 
Sbjct: 94  ----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR-DRSM 327
            F    +++ + S D T  +W+ E     +T  GH  +V+++      R+   G  D S 
Sbjct: 150 RFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 328 QLWKVPE-ESRLVFRAPASSLECCCFISN-DEFLSGSDDGSIELWSL 372
           +LW V E   R  F    S +   CF  N + F +GSDD +  L+ L
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           R L  H   + A+    D     SAS+DG ++ WD  +   V  +               
Sbjct: 60  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI--------------- 104
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCL 268
                 +S  ++  A +  G Y+A GGLD    +++ + +E      +   GH G +SC 
Sbjct: 105 ----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 160
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR-DRSM 327
            F    +++ + S D T  +W+ E     +T  GH  +V+++      R+   G  D S 
Sbjct: 161 RFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 219
Query: 328 QLWKVPE-ESRLVFRAPASSLECCCFISN-DEFLSGSDDGSIELWSL 372
           +LW V E   R  F    S +   CF  N + F +GSDD +  L+ L
Sbjct: 220 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 266

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 27/196 (13%)
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
           PQ    +     +   +  +  Y+ +G  D+ I ++D+  ++ +    GH G V  L + 
Sbjct: 112 PQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA 171
Query: 272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER---VLTVGRDRSMQ 328
            G   L SGS DRTV++W+ +         GH S V  +D +  +    ++T  RD ++ 
Sbjct: 172 HG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 329 LWKVPEESR-----------LVFRAPASSLECCCFI------------SNDEFLSGSDDG 365
           +WK+P+ES            LVF  P  +      +              +  +SGS D 
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDN 290
Query: 366 SIELWSLLRKKPVYIV 381
           ++ +W + + K +YI+
Sbjct: 291 TLIVWDVAQXKCLYIL 306

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 27/196 (13%)
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
           PQ    +     +   +  +  Y+ +G  D+ I ++D+  ++ +    GH G V  L + 
Sbjct: 112 PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 171
Query: 272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER---VLTVGRDRSMQ 328
            G   L SGS DRTV++W+ +         GH S V  +D +  +    ++T  RD ++ 
Sbjct: 172 HG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 329 LWKVPEESR-----------LVFRAPASSLECCCFI------------SNDEFLSGSDDG 365
           +WK+P+ES            LVF  P  +      +              +  +SGS D 
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 290
Query: 366 SIELWSLLRKKPVYIV 381
           ++ +W + + K +YI+
Sbjct: 291 TLIVWDVAQMKCLYIL 306

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 23/176 (13%)
Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYL-------W-----PSEEVLK 205
           H+  V +V +S       S+S D  I  WD+ +GK +K +       W     P  + L 
Sbjct: 79  HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLA 138
Query: 206 S--HGAK---------DPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH 254
           +  H  K           +     + K IL++A S DG+YLASG +D  I+++D    + 
Sbjct: 139 TGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL 198
Query: 255 IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI 310
           +    GH  P+  LTF   +  L + S D  +KI++ +      TL GH S VL +
Sbjct: 199 LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 254

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 25/238 (10%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           R L  H   V+ VALS + +   SAS D S+  W++ +G+                    
Sbjct: 61  RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQC------------------- 101
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ-EHIQAFPGHRGPVSCLTFR 271
           Q +    +K +L++A S D R + SGG D  + +W+ + +  H  +   H   VSC+ F 
Sbjct: 102 QYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFS 161
Query: 272 QGTSE--LFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRS--M 327
                  + SG +D  VK+W+      ++ L GH + V ++  +  +  L    D+    
Sbjct: 162 PSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVT-VSPDGSLCASSDKDGVA 220
Query: 328 QLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAH 385
           +LW + +   L   A  + +   CF  N  ++  + +  I ++ L  K  +  +   H
Sbjct: 221 RLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEH 278

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 24/238 (10%)
Query: 151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAK 210
           E    L H   V  V  S +D +  +   + +   + VS G  V  L  S++   S   K
Sbjct: 56  ELHKSLDHTSVVCCVKFS-NDGEYLATGCNKTTQVYRVSDGSLVARL--SDD---SAANK 109
Query: 211 DPQGRATKQSK----HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVS 266
           DP+   T  S     +I ++  S DG++LA+G  DR I +WD   ++ +    GH   + 
Sbjct: 110 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 169
Query: 267 CLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGR-D 324
            L +     +L SGS DRTV+IW+       S     +  V T+     + + +  G  D
Sbjct: 170 SLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD 228
Query: 325 RSMQLWKVPEESRLVFRAPA---------SSLECCCFISNDE-FLSGSDDGSIELWSL 372
           R++++W   E   LV R  +          S+    F  + +  +SGS D S++LW+L
Sbjct: 229 RAVRVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 112/277 (40%), Gaps = 36/277 (12%)
Query: 121 AKILQQEQLEESGRVRRVIASRV-QKPEATDEF-----RVLLKHRQSVTAVALSEDDSKG 174
           A+ L+ +  EE  ++  V   +V ++ EA  +F     R L  H   V  +   +D  + 
Sbjct: 20  AESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRI 79
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234
            S+S+DG ++ WD            S    K H    P          ++A A +  G  
Sbjct: 80  VSSSQDGKVIVWD------------SFTTNKEHAVTMP-------CTWVMACAYAPSGCA 120
Query: 235 LASGGLDRHIHLW------DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKI 288
           +A GGLD    ++      +  +    ++   H   +S  +F     ++ + S D T  +
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180
Query: 289 WNAEDRAYISTLFGHQSEVLTIDCLRKE---RVLTVGRDRSMQLWKVPE-ESRLVFRAPA 344
           W+ E    + +  GH ++VL +D    E     ++ G D+   +W +   +    F    
Sbjct: 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE 240
Query: 345 SSLECCCFI-SNDEFLSGSDDGSIELWSLLRKKPVYI 380
           S +    +  S D F SGSDD +  L+ L   + V I
Sbjct: 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 42/238 (17%)
Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
           HR  VT V      S   SAS+D +I  WD  +G         E  LK H          
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGH---------- 149
Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSEL 277
             +  +  ++    G+ LAS   D  I LWD +  E I+   GH   VS ++       +
Sbjct: 150 --TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 278 FSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKV-PEE 335
            S S D+T+K+W  +    + T  GH+  V  +   +   ++ +   D+++++W V  +E
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267
Query: 336 SRLVFRAPASSLECCCFISNDEF---------------------LSGSDDGSIELWSL 372
            +   R     +EC  +     +                     LSGS D +I++W +
Sbjct: 268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 257 AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE 316
           A  GHR PV+ + F    S + S S D T+K+W+ E   +  TL GH   V  I      
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 317 RVL-TVGRDRSMQLWKVP--EESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSL 372
           ++L +   D +++LW     E  R +     +        + D  +S S D +I++W +
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 125/297 (42%), Gaps = 50/297 (16%)
Query: 118 SLVAKILQQEQ-----LEESGRVRRVIASRVQKPEATDEF----RVLLKHRQSVTAVALS 168
           S+VA   Q+E      L    R + V+  ++ + E    F    + L  H   V+ +ALS
Sbjct: 26  SIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS 85
Query: 169 EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228
           +++    S+S D ++  WD+ +G   K                   R       + ++A 
Sbjct: 86  QENCFAISSSWDKTLRLWDLRTGTTYK-------------------RFVGHQSEVYSVAF 126
Query: 229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAF--PGHRGPVSCLTFR---------QGTSEL 277
           S D R + S G +R I LW+   +    +     H   VSC+ +          Q  +  
Sbjct: 127 SPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY 186
Query: 278 F-SGSFDRTVKIWNAEDRAYISTLFGHQSEV--LTIDCLRKERVLTVGRDRSMQLWKVPE 334
           F S  +D  +K+WN   +    T   H+S V  L+I    K  + T G+D+ + +W +  
Sbjct: 187 FASVGWDGRLKVWNTNFQIRY-TFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILN 244
Query: 335 ES--RLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLR--KKPVYIVKNAHPL 387
            +  +  F A  S++    F    ++++   D  +++++L+   K PV  ++ A P+
Sbjct: 245 LTYPQREFDA-GSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIE-AEPI 299

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 97/249 (38%), Gaps = 29/249 (11%)
Query: 158  HRQSVTAVALSEDDSKGFSASKDGSILHWD---------VSSGKGVKYLWPSEE--VLKS 206
            H   V  V  S D S   +AS D +I  W+         +   + +  ++   E  VL  
Sbjct: 888  HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV 947
Query: 207  HGAKDPQGRATKQSK-------HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP 259
               +  Q  A K  +        +    +S    Y+A G  D  I + +        +  
Sbjct: 948  DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1007
Query: 260  GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL 319
            GH+  V  + F      L S S D  +++WN +   Y+  L  HQ  V     L+  R+L
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLL 1066
Query: 320  TVGRDRSMQLWKV----PEESRLVFRAPASSLECCCFISND--EFLSGSDDGSIELWSLL 373
            +   D ++++W V     E      +    S    C IS+D  +F S S D + ++WS  
Sbjct: 1067 SWSFDGTVKVWNVITGRIERDFTCHQGTVLS----CAISSDATKFSSTSADKTAKIWSFD 1122
Query: 374  RKKPVYIVK 382
               P++ +K
Sbjct: 1123 LLSPLHELK 1131

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 97/249 (38%), Gaps = 29/249 (11%)
Query: 158  HRQSVTAVALSEDDSKGFSASKDGSILHWD---------VSSGKGVKYLWPSEE--VLKS 206
            H   V  V  S D S   +AS D +I  W+         +   + +  ++   E  VL  
Sbjct: 881  HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV 940
Query: 207  HGAKDPQGRATKQSK-------HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP 259
               +  Q  A K  +        +    +S    Y+A G  D  I + +        +  
Sbjct: 941  DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000
Query: 260  GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL 319
            GH+  V  + F      L S S D  +++WN +   Y+  L  HQ  V     L+  R+L
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLL 1059
Query: 320  TVGRDRSMQLWKV----PEESRLVFRAPASSLECCCFISND--EFLSGSDDGSIELWSLL 373
            +   D ++++W V     E      +    S    C IS+D  +F S S D + ++WS  
Sbjct: 1060 SWSFDGTVKVWNVITGRIERDFTCHQGTVLS----CAISSDATKFSSTSADKTAKIWSFD 1115
Query: 374  RKKPVYIVK 382
               P++ +K
Sbjct: 1116 LLSPLHELK 1124

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
             VL  HR  + +V  ++D +   S   +   + W+V SG  +++    E    S  A++
Sbjct: 142 LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN 201
Query: 212 PQGRATKQSKHILALAVS--SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLT 269
             G  +      L + V    D +++  G     I ++    +       GH GP+S L 
Sbjct: 202 HSGDGS------LGVDVEWVDDDKFVIPGP-KGAIFVYQITEKTPTGKLIGHHGPISVLE 254
Query: 270 FRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQL 329
           F      L S S D T++IW+  +    +  +GH   +++   +  ++V++   D S++L
Sbjct: 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRL 314
Query: 330 WKVPEESRLVF 340
           W + + + L  
Sbjct: 315 WSLKQNTLLAL 325

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQ---EHIQAFPGHRGPVSCLTFRQGTSELFS 279
           + ++A +  G  LA+   D+ + +W+   +   E +     H   V  + +      L S
Sbjct: 108 VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS 167
Query: 280 GSFDRTVKIWNAEDRAYI--STLFGHQSEV--LTIDCLRKERVLTVGRDRSMQLWK--VP 333
            S+D TVK++  E+  ++  +TL GH+S V  L  D    +R+ +   DR++++W+  +P
Sbjct: 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQYLP 226
Query: 334 -EESRLVFRAPASSLECCCFIS 354
             E  +       S +C C +S
Sbjct: 227 GNEQGVACSGSDPSWKCICTLS 248

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGHRGPVSCLTFR-QGTSELFS 279
           +I ++AV     Y+ SG  D  + LW+      + Q F GH   V C+ F  +  S   S
Sbjct: 99  YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 280 GSFDRTVKIWN-AEDRAYISTLFGHQSEVLTIDCL---RKERVLTVGRDRSMQLWKVPEE 335
           G  DRTVK+W+  +     +   G +  V  +D      K  ++T   D ++++W    +
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Query: 336 SRL-VFRAPASSLECCCFISN-DEFLSGSDDGSIELWS 371
           S +       S++    F       +SGS+DG++++W+
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGHRGPVSCLTFR-QGTSELFS 279
           +I ++AV     Y+ SG  D  + LW+      + Q F GH   V C+ F  +  S   S
Sbjct: 99  YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 280 GSFDRTVKIWN-AEDRAYISTLFGHQSEVLTIDCL---RKERVLTVGRDRSMQLWKVPEE 335
           G  DRTVK+W+  +     +   G +  V  +D      K  ++T   D ++++W    +
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Query: 336 SRL-VFRAPASSLECCCFISN-DEFLSGSDDGSIELWS 371
           S +       S++    F       +SGS+DG++++W+
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGHRGPVSCLTFRQGTSELF-S 279
           +I ++AV     Y+ SG  D  + LW+      + Q F GH   V C+ F       F S
Sbjct: 99  YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 280 GSFDRTVKIWN-AEDRAYISTLFGHQSEVLTIDCL---RKERVLTVGRDRSMQLWKVPEE 335
           G  DRTVK+W+  +     +   G +  V  +D      K  ++T   D ++++W    +
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Query: 336 SRL-VFRAPASSLECCCFISN-DEFLSGSDDGSIELWS 371
           S +       S++    F       +SGS+DG++++W+
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGHRGPVSCLTFRQGTSELF-S 279
           +I ++AV     Y+ SG  D  + LW+      + Q F GH   V C+ F       F S
Sbjct: 99  YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 280 GSFDRTVKIWN-AEDRAYISTLFGHQSEVLTIDCL---RKERVLTVGRDRSMQLWKVPEE 335
           G  DRTVK+W+  +     +   G +  V  +D      K  ++T   D ++++W    +
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Query: 336 SRL-VFRAPASSLECCCFISN-DEFLSGSDDGSIELWS 371
           S +       S++    F       +SGS+DG++++W+
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 9/150 (6%)
Query: 225 ALAVSSDGRYLASGGLDRHIH---LWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS 281
           ++   S+   L  GG D  I+   L+ T  ++ +    GH+G V  L+F+ G   + SGS
Sbjct: 64  SVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGV--VISGS 121
Query: 282 FDRTVKIWNAEDRAYISTLFGHQSEVLT--IDCLRKERVLTVGRDRSMQLWKVPEESRLV 339
           +D+T K+W      Y   L  H + V    +    + + LT   D++++LW+  +  +  
Sbjct: 122 WDKTAKVWKEGSLVY--NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTF 179
Query: 340 FRAPASSLECCCFISNDEFLSGSDDGSIEL 369
                  +     + +  F+S S+DG I+L
Sbjct: 180 SGIHNDVVRHLAVVDDGHFISCSNDGLIKL 209

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 9/144 (6%)
Query: 197 LWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT----RIQ 252
           +W  EE        D           +  +A S+DG YLA+   D+ + +W+T       
Sbjct: 84  IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143
Query: 253 EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY--ISTLFGHQSEVLTI 310
           E I     H   V  + +    + L S S+D TV+IW   D  +  ++ L GH+  V + 
Sbjct: 144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS 203
Query: 311 DCLRKE---RVLTVGRDRSMQLWK 331
           D  + E   R+ +   D ++++WK
Sbjct: 204 DFDKTEGVFRLCSGSDDSTVRVWK 227

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 37/238 (15%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           R L  H   V ++  + + +   SAS+DG ++ W+  + +            K+H  K  
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ------------KTHAIK-- 105
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH-------IQAFPGHRG-P 264
                     ++  A + +G+ +A GGLD    +++   Q          +   GH+G  
Sbjct: 106 -----LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA 160
Query: 265 VSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-----FGHQSEV--LTIDCLRKER 317
            SC       + L +GS D+T  +W+      IS        GH ++V  L+I+ L    
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 318 VLTVGRDRSMQLWKVPEESRLV--FRAPASSLECCCFISNDE-FLSGSDDGSIELWSL 372
            ++   D +++LW +   SR V  +      +    F  + + F +GSDDG+  L+ +
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 46/211 (21%)
Query: 208 GAKDPQGRA--TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPV 265
            A  P+ +A  T  +    ALA+S D +   S   D +I +WD   Q  ++ F GH    
Sbjct: 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186
Query: 266 SCLTFRQGTSELFSGSFDRTVKIWN------AEDRAYISTLFG----------------- 302
           SC+      ++L++G  D TV+ W+       +   + S +F                  
Sbjct: 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS 246
Query: 303 -----------------HQSEVLTID-CLRKERVLTVGRDRSMQLWKVPEESRLVFRAPA 344
                            H+S VL++      +  ++ G+D  +  W+ P  +  +F++  
Sbjct: 247 NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-IFQSKE 305
Query: 345 SSLECCCFISNDE--FLSGSDDGSIELWSLL 373
           SS    C IS D+   ++GS D    ++ ++
Sbjct: 306 SSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
Query: 202 EVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ---EHIQAF 258
            V K  GA   + +       I ++A S++G +L +    R +  +         H  ++
Sbjct: 473 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW 532
Query: 259 PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE---DRAYISTLFGHQSEVLTIDCLRK 315
             H   V+C+++      L +GS D +V +WN     D   I       S V ++  L +
Sbjct: 533 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 592
Query: 316 ERVLTVGRDRSMQLWKVP 333
             +++ G+D +++ W VP
Sbjct: 593 TTIVSAGQDSNIKFWNVP 610

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE 276
           T +S ++ ++  S DG +L+ G  +  + ++D   Q  ++   GH+  V CL++ +    
Sbjct: 131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHV-- 188
Query: 277 LFSGS-----FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQL 329
           L SGS         V+I N +    I TL GH SEV  +   R +  ++ + G D  +Q+
Sbjct: 189 LSSGSRSGAIHHHDVRIANHQ----IGTLQGHSSEVCGL-AWRSDGLQLASGGNDNVVQI 243
Query: 330 W----KVPEESRLVFRAPASSLECCCFISNDEFLS---GSDDGSIELWS 371
           W     +P+ ++    A   ++  C + SN   L+   G+ D  I  W+
Sbjct: 244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSN--LLATGGGTMDKQIHFWN 290

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234
            SAS D ++  WD+++G     +  ++ +   H A          + H+L  ++      
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA-----VVEDVAWHLLHESL------ 244
Query: 235 LASGGLDRHIHLWDTR---IQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWN 290
             S   D+ + +WDTR     +       H   V+CL+F   +  +  +GS D+TV +W+
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 291 AED-RAYISTLFGHQSEVLTID-CLRKERVL-TVGRDRSMQLWKV 332
             + +  + T   H+ E+  +      E +L + G DR + +W +
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234
            SAS D ++  WD+++G     +  ++ +   H A          + H+L  ++      
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA-----VVEDVAWHLLHESL------ 244
Query: 235 LASGGLDRHIHLWDTR---IQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWN 290
             S   D+ + +WDTR     +       H   V+CL+F   +  +  +GS D+TV +W+
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 291 AED-RAYISTLFGHQSEVLTID-CLRKERVL-TVGRDRSMQLWKV 332
             + +  + T   H+ E+  +      E +L + G DR + +W +
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 26/172 (15%)
Query: 154 VLLKHRQSVTAVALS-EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           +L  HRQ + AV+ S   D    +AS D  +  WDV    G          L  H  K  
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI------TLDQHNGKKS 234
Query: 213 QGRATKQSKH---ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI---------QAFPG 260
           Q   +  + H   +  L  +SDG +L + G D  + LW++   E+           +  G
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294
Query: 261 HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDC 312
            +  VSC      +SE     +  T+ ++       I+ L GH     T+DC
Sbjct: 295 LKFTVSC----GCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK---TVDC 339

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234
            SAS D +I  WD+S+      +  ++ +   H A          S H+L  ++      
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA-----VVEDVSWHLLHESL------ 242
Query: 235 LASGGLDRHIHLWDTR---IQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWN 290
             S   D+ + +WDTR     +   +   H   V+CL+F   +  +  +GS D+TV +W+
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 291 AED-RAYISTLFGHQSEVLTID-CLRKERVL-TVGRDRSMQLWKV 332
             + +  + +   H+ E+  +      E +L + G DR + +W +
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPG----HRGPVSCLTFRQGTSELFSGSFDRTVK 287
           G +L +G     +  W+  +Q+  Q  P     H GPV  + +    S++F+ S D+T K
Sbjct: 54  GNFLIAGSWANDVRCWE--VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111
Query: 288 IWNAEDRAYISTLFGHQSEVLTIDCLRKER---VLTVGRDRSMQLW 330
           +W+      I  +  H + V TI  ++      V+T   D++++ W
Sbjct: 112 MWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 255 IQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYIST---LFGHQSEVLTI 310
           I+ + GH   ++ L F  +  + L S S D  +++WN +    ++    + GH+ EVL+ 
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167
Query: 311 DC-LRKERVLTVGRDRSMQLWKV 332
           D  L  E++++ G D S++LW++
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLWRI 190

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 255 IQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYIST---LFGHQSEVLTI 310
           I+ + GH   ++ L F  +  + L S S D  +++WN +    ++    + GH+ EVL+ 
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 203
Query: 311 DC-LRKERVLTVGRDRSMQLWKV 332
           D  L  E++++ G D S++LW++
Sbjct: 204 DYDLLGEKIMSCGMDHSLKLWRI 226

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 255 IQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYIST---LFGHQSEVLTI 310
           I+ + GH   ++ L F  +  + L S S D  +++WN +    ++    + GH+ EVL+ 
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 162
Query: 311 DC-LRKERVLTVGRDRSMQLWKV 332
           D  L  E++++ G D S++LW++
Sbjct: 163 DYDLLGEKIMSCGMDHSLKLWRI 185

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 255 IQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYIST---LFGHQSEVLTI 310
           I+ + GH   ++ L F  +  + L S S D  +++WN +    ++    + GH+ EVL+ 
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 311 DC-LRKERVLTVGRDRSMQLWKV 332
           D  L  E++++ G D S++LW++
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRI 189

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 255 IQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYIST---LFGHQSEVLTI 310
           I+ + GH   ++ L F  +  + L S S D  +++WN +    ++    + GH+ EVL+ 
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 311 DC-LRKERVLTVGRDRSMQLWKV 332
           D  L  E++++ G D S++LW++
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRI 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	513
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.76
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.74
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.71
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.65
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.63
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.61
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.58
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.57
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.57
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.55
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.54
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.53
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.53
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.49
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.48
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.48
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.47
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.43
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.4
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.39
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.37
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.36
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.35
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.31
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.31
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.29
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.27
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.27
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.21
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.21
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.17
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.16
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.14
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.13
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.11
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.11
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.07
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.06
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.02
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.01
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.97
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.97
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.94
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.91
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.9
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.88
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.88
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.87
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.86
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.85
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.85
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.85
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.82
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.79
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.78
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.76
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.75
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.72
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.71
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.66
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.59
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.58
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.53
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.52
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.51
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.5
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.48
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.45
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.45
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.45
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.44
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.42
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.41
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.4
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.39
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.34
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.34
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.33
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.31
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.26
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.25
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.24
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.21
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.2
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.18
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.18
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.17
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.13
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.05
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.98
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.96
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.95
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.95
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.94
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.79
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.74
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.73
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.67
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.63
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.56
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.55
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.54
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.5
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.49
3ott_A	758	Two-component system sensor histidine kinase; beta	97.48
3ott_A	758	Two-component system sensor histidine kinase; beta	97.47
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.47
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.37
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.34
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.29
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.29
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.28
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.27
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.26
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.2
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.2
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.05
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.02
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.99
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.97
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.95
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.91
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.88
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.86
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.82
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.7
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.54
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.41
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.34
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.25
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.05
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.9
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.38
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.07
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.95
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.11
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	93.85
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.57
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.3
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.17
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	92.11
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.67
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.5
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.7
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	86.07
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.28
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	81.73
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	80.53

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-48  Score=375.38  Aligned_cols=287  Identities=25%  Similarity=0.432  Sum_probs=260.0

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ....+.+|.++|++++|+|++.+|++|+.||+|+|||+.++.....+                   .+|...|++++|+|
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-------------------~~h~~~V~~v~~~~  160 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-------------------KGHTDSVQDISFDH  160 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-------------------CCCSSCEEEEEECT
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-------------------eccCCcEEEEEEcC
Confidence            34568899999999999999999999999999999999998876654                   68999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEE
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI  310 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  310 (513)
                      ++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++.++..+.+|...|.++
T Consensus       161 ~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~  240 (410)
T 1vyh_C          161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV  240 (410)
T ss_dssp             TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCe-EEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecC--------------------C-eEEEEeCCCCE
Q 010296          311 DCLRKER-VLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISN--------------------D-EFLSGSDDGSI  367 (513)
Q Consensus       311 ~~~~~~~-~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~--------------------~-~~~~~~~dg~i  367 (513)
                      .+++++. +++++.|+.|++||+.+.... .+..|...|.+++|+|+                    + .+++|+.|+.|
T Consensus       241 ~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i  320 (410)
T 1vyh_C          241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI  320 (410)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence            9999885 558999999999999887765 56788899999999985                    3 48899999999


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR  447 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~  447 (513)
                      ++||+.++.++..+..                                     |..+|++++|+|++++|++|+.||.|+
T Consensus       321 ~iwd~~~~~~~~~~~~-------------------------------------h~~~v~~v~~~~~g~~l~s~s~D~~i~  363 (410)
T 1vyh_C          321 KMWDVSTGMCLMTLVG-------------------------------------HDNWVRGVLFHSGGKFILSCADDKTLR  363 (410)
T ss_dssp             EEEETTTTEEEEEEEC-------------------------------------CSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred             EEEECCCCceEEEEEC-------------------------------------CCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            9999999998887743                                     334599999999999999999999999


Q ss_pred             EEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          448 LWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       448 vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      |||+.++ ..+..+..  |...|++++|+|++.+|+++ +.||+|++|+.
T Consensus       364 vwd~~~~-~~~~~~~~--h~~~v~~l~~~~~~~~l~sg-s~D~~i~vW~~  409 (410)
T 1vyh_C          364 VWDYKNK-RCMKTLNA--HEHFVTSLDFHKTAPYVVTG-SVDQTVKVWEC  409 (410)
T ss_dssp             EECCTTS-CCCEEEEC--CSSCEEEEEECSSSSCEEEE-ETTSEEEEEC-
T ss_pred             EEECCCC-ceEEEEcC--CCCcEEEEEEcCCCCEEEEE-eCCCcEEEEeC
Confidence            9999876 44455543  78899999999999999999 99999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.5e-47  Score=356.10  Aligned_cols=288  Identities=24%  Similarity=0.412  Sum_probs=254.0

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ...+.+.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+                   ..|...|.+++|+
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-------------------~~~~~~v~~~~~s  106 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-------------------PLRSSWVMTCAYA  106 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-------------------ECSSSCEEEEEEC
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-------------------ecCCccEEEEEEC
Confidence            445678899999999999999999999999999999999988876644                   5678889999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCc----ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQ----EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS  305 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  305 (513)
                      |++++|++|+.|+.|++|++.+.    .....+.+|...|.++.|++++. |++++.|++|++||+.+++.+..+.+|..
T Consensus       107 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~  185 (340)
T 1got_B          107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTG  185 (340)
T ss_dssp             TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCC
Confidence            99999999999999999999865    35567788999999999998764 88999999999999999999999999999


Q ss_pred             CeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEee
Q 010296          306 EVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       306 ~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      .|.+++|+|++. +++++.|+.|++||++++... .+..|...|.+++|+|++. |++|+.||+|++||+++++.+..+.
T Consensus       186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  265 (340)
T 1got_B          186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            999999999875 558999999999999987765 6778889999999999985 8899999999999999988776654


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeee
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLY  462 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~  462 (513)
                      ..                                   .+...|++++|+|++++|++|+.||.|+|||+.+. ..+..+.
T Consensus       266 ~~-----------------------------------~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~~  309 (340)
T 1got_B          266 HD-----------------------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLA  309 (340)
T ss_dssp             CT-----------------------------------TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEE
T ss_pred             cC-----------------------------------CcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEee
Confidence            21                                   11223999999999999999999999999999887 3444444


Q ss_pred             ecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          463 NLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       463 ~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                        .|.+.|++++|+|+|.+|+++ +.|+.|++|+
T Consensus       310 --~h~~~v~~~~~s~dg~~l~s~-s~D~~i~iWd  340 (340)
T 1got_B          310 --GHDNRVSCLGVTDDGMAVATG-SWDSFLKIWN  340 (340)
T ss_dssp             --CCSSCEEEEEECTTSSCEEEE-ETTSCEEEEC
T ss_pred             --cCCCcEEEEEEcCCCCEEEEE-cCCccEEecC
Confidence              388999999999999999999 8999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.8e-47  Score=354.07  Aligned_cols=289  Identities=17%  Similarity=0.281  Sum_probs=254.9

Q ss_pred             chhhhhccCCCeEEEEECCC----CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296          151 EFRVLLKHRQSVTAVALSED----DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL  226 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (513)
                      .++.+.+|.+.|++++|+|+    +.+|+||+.|++|+||++..+......                 .+.+|...|.++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~~~   86 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVVSV   86 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEEE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEEEE
Confidence            34567799999999999985    678999999999999999876543211                 246899999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC
Q 010296          227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE  306 (513)
Q Consensus       227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  306 (513)
                      +|++++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.+|.|++|++.+++....+..+...
T Consensus        87 ~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~  166 (321)
T 3ow8_A           87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF  166 (321)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             eEEEEeeCCCe-EEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          307 VLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       307 v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      |.+++|+|++. +++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. |++++.|+.|+|||+.+++.+..+. 
T Consensus       167 v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-  245 (321)
T 3ow8_A          167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-  245 (321)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-
Confidence            99999999885 558899999999999988776 5667888999999999986 7799999999999999998877763 


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                                                          .|..+|.+++|+|++++|++|+.||+|+|||+.++ ..+..+. 
T Consensus       246 ------------------------------------~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~-  287 (321)
T 3ow8_A          246 ------------------------------------GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFF-  287 (321)
T ss_dssp             ------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEEC-
T ss_pred             ------------------------------------CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEc-
Confidence                                                34455999999999999999999999999999887 4444443 


Q ss_pred             cCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                       .|...|.+++|+|++++|+++ +.||.|++|+.
T Consensus       288 -~h~~~v~~v~~s~~g~~l~s~-~~d~~i~vwd~  319 (321)
T 3ow8_A          288 -DHQDQVWGVKYNGNGSKIVSV-GDDQEIHIYDC  319 (321)
T ss_dssp             -CCSSCEEEEEECTTSSEEEEE-ETTCCEEEEEC
T ss_pred             -CCCCcEEEEEECCCCCEEEEE-eCCCeEEEEeC
Confidence             378899999999999999999 89999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.4e-46  Score=350.93  Aligned_cols=289  Identities=21%  Similarity=0.376  Sum_probs=252.4

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ...+.+.+|.+.|++++|+|++++|+||+.||+|+|||..++.....+                   ..|...|.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-------------------~~~~~~v~~~~~s  115 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-------------------TMPCTWVMACAYA  115 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------------------ECSSSCCCEEEEC
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-------------------ecCCCCEEEEEEC
Confidence            456778999999999999999999999999999999999888766543                   4567789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCc------ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQ------EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH  303 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  303 (513)
                      |++.+|++|+.|+.+++|++...      .....+.+|...|.+++|+|++..|++++.|++|++||+.+++++..+.+|
T Consensus       116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h  195 (354)
T 2pbi_B          116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH  195 (354)
T ss_dssp             TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC
Confidence            99999999999999999998643      334566789999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEeeCC--C-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCee
Q 010296          304 QSEVLTIDCLRK--E-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPV  378 (513)
Q Consensus       304 ~~~v~~~~~~~~--~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~  378 (513)
                      ...|.++.++|.  + .+++++.|+.|++||++++... .+..|...|.+++|+|++. |++++.|++|++||+++++.+
T Consensus       196 ~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~  275 (354)
T 2pbi_B          196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV  275 (354)
T ss_dssp             SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            999999999873  3 6779999999999999988766 5677889999999999885 889999999999999988776


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcce
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDI  458 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~  458 (513)
                      ..+....                                   +...+++++|+|++++|++|+.|+.|+|||+.++ ..+
T Consensus       276 ~~~~~~~-----------------------------------~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~  319 (354)
T 2pbi_B          276 AIYSKES-----------------------------------IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRV  319 (354)
T ss_dssp             EEECCTT-----------------------------------CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEE
T ss_pred             EEEcCCC-----------------------------------cccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-ceE
Confidence            6554211                                   1123899999999999999999999999999887 334


Q ss_pred             eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          459 QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       459 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      ..+.  .|.+.|++++|+|+|++|+++ +.|++|++|+
T Consensus       320 ~~l~--~h~~~v~~l~~spdg~~l~sg-s~D~~v~vW~  354 (354)
T 2pbi_B          320 SILF--GHENRVSTLRVSPDGTAFCSG-SWDHTLRVWA  354 (354)
T ss_dssp             EEEC--CCSSCEEEEEECTTSSCEEEE-ETTSEEEEEC
T ss_pred             EEEE--CCCCcEEEEEECCCCCEEEEE-cCCCCEEecC
Confidence            4443  488999999999999999999 9999999995

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.5e-46  Score=352.25  Aligned_cols=291  Identities=17%  Similarity=0.220  Sum_probs=234.0

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEeC------CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSASK------DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ..+|...|++++|+|||++|++|+.      |+.|++|+..++.....+               ......|...|++++|
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~---------------~~~~~~~~~~V~~~~~  102 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL---------------CTAGVQTEAGVTDVAW  102 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG---------------CSEEEECSSCEEEEEE
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE---------------ecccCCCCCCEEEEEE
Confidence            3579999999999999999999997      788999998877654432               0122468888999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeee----ccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeeccc
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQA----FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQ  304 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  304 (513)
                      +|++. +++++.||+|+|||+.+++....    ..+|...|++++|+|++++|++++.|+.|++||+.+++++..+.+|.
T Consensus       103 s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~  181 (357)
T 4g56_B          103 VSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS  181 (357)
T ss_dssp             ETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             cCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence            99986 55677899999999988875433    34799999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeE---EecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCe
Q 010296          305 SEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLV---FRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       305 ~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~  377 (513)
                      ..|.+++|++++  .+++++.|+.|++||++++....   ...+...+.+++|+|++  .|++|+.|+.|++||++++++
T Consensus       182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~  261 (357)
T 4g56_B          182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS  261 (357)
T ss_dssp             SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred             CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence            999999999865  57799999999999998876552   33456779999999975  377899999999999999988


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCc
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETK  456 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~  456 (513)
                      +..+..                                     |...|++++|+|++ ++|++|+.||+|+|||+.++ +
T Consensus       262 ~~~~~~-------------------------------------~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-~  303 (357)
T 4g56_B          262 AQTSAV-------------------------------------HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS-E  303 (357)
T ss_dssp             CEEECC-------------------------------------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC-E
T ss_pred             eEEEec-------------------------------------cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-c
Confidence            887743                                     33449999999987 68999999999999999887 3


Q ss_pred             ceeeeeecCcccEEEEEEeec-CCCEEEEEecCCCcccccccCCCccc
Q 010296          457 DIQPLYNLPLVGFVNSLAFAK-SGQFLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       457 ~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                         .+....|.+.|++|+|+| ++.+|+++ +.||+|++|++....+.
T Consensus       304 ---~~~~~~H~~~V~~vafsP~d~~~l~s~-s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          304 ---VFRDLSHRDFVTGVAWSPLDHSKFTTV-GWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             ---EEEECCCSSCEEEEEECSSSTTEEEEE-ETTSCEEEEECC-----
T ss_pred             ---EeEECCCCCCEEEEEEeCCCCCEEEEE-cCCCeEEEEECCCCCcc
Confidence               333446899999999999 78899988 89999999998766544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-46  Score=358.80  Aligned_cols=306  Identities=20%  Similarity=0.352  Sum_probs=259.1

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI  223 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (513)
                      +.+....+.+++.+|.+.|++++|+|++++|++|+.||+|+|||+.++.....+                   ..|...|
T Consensus        51 ~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-------------------~~h~~~v  111 (380)
T 3iz6_a           51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-------------------KLHCPWV  111 (380)
T ss_dssp             CCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-------------------ECCCTTC
T ss_pred             cccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-------------------ecCCCCE
Confidence            455566777889999999999999999999999999999999999988876654                   5788889


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-------eeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCc
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQE-------HIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      .+++|+|++++|++|+.|+.|++|++.+..       ....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++
T Consensus       112 ~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~  191 (380)
T 3iz6_a          112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ  191 (380)
T ss_dssp             CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred             EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence            999999999999999999999999987532       345678899999999999974 569999999999999999999


Q ss_pred             eeEEe-----ecccCCeEEEEeeC-CC-eEEEEeCCCcEEEEecCCC-e-eeEEecCCCCeeEEEeecCCe-EEEEeCCC
Q 010296          296 YISTL-----FGHQSEVLTIDCLR-KE-RVLTVGRDRSMQLWKVPEE-S-RLVFRAPASSLECCCFISNDE-FLSGSDDG  365 (513)
Q Consensus       296 ~~~~~-----~~~~~~v~~~~~~~-~~-~~~~~~~d~~i~iwd~~~~-~-~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg  365 (513)
                      .+..+     .+|...|.++.|++ ++ .+++++.|+.|++||++.. . ...+.+|...|.+++|+|++. |++|+.||
T Consensus       192 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~  271 (380)
T 3iz6_a          192 RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG  271 (380)
T ss_dssp             EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred             EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC
Confidence            88776     57889999999987 44 6779999999999999743 3 346778999999999999985 88999999


Q ss_pred             CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc
Q 010296          366 SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS  445 (513)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~  445 (513)
                      +|+|||+++++++..+.......                              ..+...|++++|+|+|++|++|+.||.
T Consensus       272 ~i~lwd~~~~~~~~~~~~~~~~~------------------------------~~~~~~v~~~~~s~~g~~l~~g~~dg~  321 (380)
T 3iz6_a          272 TCRLFDMRTGHQLQVYNREPDRN------------------------------DNELPIVTSVAFSISGRLLFAGYSNGD  321 (380)
T ss_dssp             CEEEEETTTTEEEEEECCCCSSS------------------------------CCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred             eEEEEECCCCcEEEEeccccccc------------------------------ccccCceEEEEECCCCCEEEEEECCCC
Confidence            99999999999888775432210                              112234899999999999999999999


Q ss_pred             EEEEEeCCCCcceeeeee--cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          446 VRLWAIESETKDIQPLYN--LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       446 v~vwd~~~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      |+|||+..+. .+..+..  ..|.+.|++++|+|+|++|++| +.|++|++|++...
T Consensus       322 i~vwd~~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~D~~i~iW~~~~~  376 (380)
T 3iz6_a          322 CYVWDTLLAE-MVLNLGTLQNSHEGRISCLGLSSDGSALCTG-SWDKNLKIWAFSGH  376 (380)
T ss_dssp             EEEEETTTCC-EEEEECCSCSSCCCCCCEEEECSSSSEEEEE-CTTSCEEEEECCSS
T ss_pred             EEEEECCCCc-eEEEEecccCCCCCceEEEEECCCCCEEEEe-eCCCCEEEEecCCC
Confidence            9999998773 3333321  2488899999999999999999 99999999998654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.1e-46  Score=342.56  Aligned_cols=288  Identities=17%  Similarity=0.257  Sum_probs=246.5

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ..+++.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+                   ..|..+|.+++|+|
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-------------------~~~~~~v~~~~~~~   65 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-------------------QVTETPVRAGKFIA   65 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-------------------ECCSSCEEEEEEEG
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-------------------eccCCcEEEEEEeC
Confidence            34578899999999999999999999999999999999998876644                   57888999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-ceeEEeecccCCeEE
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-AYISTLFGHQSEVLT  309 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~  309 (513)
                      ++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.++ .....+.+|...|.+
T Consensus        66 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~  145 (304)
T 2ynn_A           66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC  145 (304)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred             CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999887 455678899999999


Q ss_pred             EEeeC-CC-eEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeec--CC-eEEEEeCCCCEEEEecCCCCeeEEee
Q 010296          310 IDCLR-KE-RVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFIS--ND-EFLSGSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       310 ~~~~~-~~-~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~--~~-~~~~~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      ++|+| ++ .+++++.|++|++||+......  ....+...+..+.++|  ++ .+++++.|++|++||+.+++++..+.
T Consensus       146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~  225 (304)
T 2ynn_A          146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE  225 (304)
T ss_dssp             EEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC
Confidence            99998 44 6779999999999999776543  3345567888898886  44 48899999999999999999888875


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeee
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLY  462 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~  462 (513)
                      .                                     |...|.+++|+|++++|++|+.||+|+|||+.+. +....+.
T Consensus       226 ~-------------------------------------h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~  267 (304)
T 2ynn_A          226 G-------------------------------------HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN  267 (304)
T ss_dssp             C-------------------------------------CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-CEEEEEC
T ss_pred             C-------------------------------------CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeecc
Confidence            3                                     3344999999999999999999999999999887 4444443


Q ss_pred             ecCcccEEEEEEeecCCC--EEEEEecCCCcccccccCC
Q 010296          463 NLPLVGFVNSLAFAKSGQ--FLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       463 ~~~~~~~v~~v~~sp~~~--~l~~~~~~dg~v~~W~~~~  499 (513)
                      .  +...+.+++|+|++.  +|+++ +++ .+.+|++..
T Consensus       268 ~--~~~~~~~~~~~~~~~~~~~asg-~~~-g~~~~~~~~  302 (304)
T 2ynn_A          268 V--GLERSWCIATHPTGRKNYIASG-FDN-GFTVLSLGN  302 (304)
T ss_dssp             C--SSSSEEEEEECTTCGGGCEEEE-ETT-EEEEEECC-
T ss_pred             C--CCccEEEEEECCCCCceEEEEe-cCC-ceEEEEecc
Confidence            3  677899999999986  45555 555 466776643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.9e-45  Score=340.65  Aligned_cols=294  Identities=23%  Similarity=0.388  Sum_probs=249.3

Q ss_pred             cchhhhhccCCCeEEEEECCCC-CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          150 DEFRVLLKHRQSVTAVALSEDD-SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ....++.+|.+.|++++|+|++ ++|++|+.|++|++|++.........              +...+.+|...|.+++|
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~   73 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTL   73 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEE
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEE
Confidence            4456788999999999999965 89999999999999998653321100              11134689999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      +|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++ +.++..+.+|...|.
T Consensus        74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~  152 (319)
T 3frx_A           74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS  152 (319)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEE
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEE
Confidence            9999999999999999999999999999999999999999999999999999999999999996 467778889999999


Q ss_pred             EEEeeCCC-------eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeE
Q 010296          309 TIDCLRKE-------RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVY  379 (513)
Q Consensus       309 ~~~~~~~~-------~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~  379 (513)
                      ++.+.|..       .+++++.|+.|++||+.+.... .+..|...|.+++|+|++. |++++.||.|+|||+.+++++.
T Consensus       153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~  232 (319)
T 3frx_A          153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY  232 (319)
T ss_dssp             EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE
T ss_pred             EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            99999843       5779999999999999987765 5678999999999999986 7899999999999999999888


Q ss_pred             EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCccee
Q 010296          380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQ  459 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~  459 (513)
                      .+....                                      .|.+++|+|++.+|++++.+ .|++|++... ..+.
T Consensus       233 ~~~~~~--------------------------------------~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~  272 (319)
T 3frx_A          233 TLSAQD--------------------------------------EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVD  272 (319)
T ss_dssp             EEECCS--------------------------------------CEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEE
T ss_pred             EecCCC--------------------------------------cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeee
Confidence            876422                                      29999999999999988865 5999999875 2222


Q ss_pred             eeee------cCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          460 PLYN------LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       460 ~~~~------~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      .+..      ..+...+.+++|+|+|++|+++ +.||.|++|++.+
T Consensus       273 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg-~~Dg~i~vWd~~t  317 (319)
T 3frx_A          273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG-YTDNVIRVWQVMT  317 (319)
T ss_dssp             EECCCCTTCCGGGCCCEEEEEECTTSSEEEEE-ETTSCEEEEEEEE
T ss_pred             ccCccccccccCcCcceeEEEECCCCCEEEEe-ecCceEEEEEEee
Confidence            2211      1245679999999999999999 8999999999765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.4e-45  Score=344.25  Aligned_cols=316  Identities=16%  Similarity=0.228  Sum_probs=246.9

Q ss_pred             cchhhhhccCC-CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          150 DEFRVLLKHRQ-SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       150 ~~~~~~~~h~~-~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ..+..+.+|.. .|++++|+|++++||+|+.|++|+||++.++......                ....+|...|.+++|
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~----------------~~~~~h~~~v~~~~~   69 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS----------------VLSEGHQRTVRKVAW   69 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE----------------EECSSCSSCEEEEEE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee----------------eeccccCCcEEEEEE
Confidence            45667889988 9999999999999999999999999999876533211                012579999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCc--ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc---eeEEeecc
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQ--EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA---YISTLFGH  303 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~  303 (513)
                      +|++++|++|+.|+.|++|++..+  +++..+.+|...|.+++|+|++++|++++.|++|++||+.++.   ++..+.+|
T Consensus        70 sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h  149 (345)
T 3fm0_A           70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH  149 (345)
T ss_dssp             CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred             CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence            999999999999999999998776  4577889999999999999999999999999999999998763   45677889


Q ss_pred             cCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCee---eEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCee
Q 010296          304 QSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESR---LVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPV  378 (513)
Q Consensus       304 ~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~  378 (513)
                      ...|.+++|+|++ .+++++.|+.|++|++.....   ..+..|...|.+++|+|++. |++++.|++|+||+.......
T Consensus       150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence            9999999999987 566899999999999987653   35778899999999999985 889999999999996432211


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcce
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDI  458 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~  458 (513)
                      ..+....        .......+.             .....|...|.+++|+|++.+|++++.|+.|++|++.......
T Consensus       230 ~~~~~~~--------~~~~~~~~~-------------~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~  288 (345)
T 3fm0_A          230 QGVACSG--------SDPSWKCIC-------------TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ  288 (345)
T ss_dssp             TCCCCC-----------CEEEEEE-------------EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT
T ss_pred             ccceeec--------cCCccceeE-------------EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc
Confidence            0000000        000000000             0002255669999999999999999999999999997653211


Q ss_pred             ee----e--eecCcccEEEEEEeecCCC-EEEEEecCCCcccccccCCCccc
Q 010296          459 QP----L--YNLPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       459 ~~----~--~~~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                      ..    .  ....|...|++|+|+|++. +||++ +.||+|++|+.....+.
T Consensus       289 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~-s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          289 QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC-SDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE-ETTSCEEEEEECC----
T ss_pred             eeeEEEEeeecccccCcEeEeEEeCCCceEEEEc-CCCCcEEEEEecCCCCc
Confidence            11    1  1124788999999999985 77777 99999999998876654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-45  Score=346.21  Aligned_cols=295  Identities=15%  Similarity=0.144  Sum_probs=232.6

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      ..|...|.+++|+|||++|++++ |+++++||..........     ..   ...........|...|++++|+|++ .|
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~v~~~~~s~d~-~l   96 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC-----AA---PNEGFCSAGVQTEAGVADLTWVGER-GI   96 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG-----GT---TCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccc-----cc---CCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence            35778899999999999999887 778888873211100000     00   0000001123456789999999985 68


Q ss_pred             EEEeCCCcEEEEeCCCcceeee----ccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEE
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQA----FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID  311 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  311 (513)
                      ++|+.||+|+|||+.+++.+..    +.+|...|++++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++
T Consensus        97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~  176 (344)
T 4gqb_B           97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVA  176 (344)
T ss_dssp             EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEE
Confidence            8999999999999998876543    347999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCC--eEEEEeCCCcEEEEecCCCeeeEE---ecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296          312 CLRKE--RVLTVGRDRSMQLWKVPEESRLVF---RAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       312 ~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                      |++++  .+++++.|++|++||+++++....   ..+...+.+++|+|++  .|++|+.||.|+|||+++++++..+.. 
T Consensus       177 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~-  255 (344)
T 4gqb_B          177 ASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV-  255 (344)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC-
T ss_pred             ecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC-
Confidence            99976  467999999999999998876533   3455678899999865  367899999999999999999888753 


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                                                          |...|++++|+|++ ++|++|+.||+|+|||+.++ +   .+..
T Consensus       256 ------------------------------------h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-~---~~~~  295 (344)
T 4gqb_B          256 ------------------------------------HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-E---LFRS  295 (344)
T ss_dssp             ------------------------------------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-E---EEEE
T ss_pred             ------------------------------------CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-c---EEEE
Confidence                                                33449999999998 58999999999999999887 2   2333


Q ss_pred             cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ..|.+.|++|+|+|+++.|++++|.|++|++|++....
T Consensus       296 ~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          296 QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            45899999999999998666555999999999987653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-43  Score=329.66  Aligned_cols=293  Identities=21%  Similarity=0.329  Sum_probs=252.6

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      .....+.+|.+.|++++|+|++++|++|+.||.|++|++.++.....+                   .+|...|.+++|+
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-------------------~~h~~~v~~~~~~   74 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-------------------SGHKLGISDVAWS   74 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-------------------CCCSSCEEEEEEC
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-------------------ccCCCceEEEEEc
Confidence            345677899999999999999999999999999999999988776544                   5788999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEE
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLT  309 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  309 (513)
                      |++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+
T Consensus        75 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  154 (312)
T 4ery_A           75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA  154 (312)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             CCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCC-eEEEEeCCCcEEEEecCCCeeeEE--ecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296          310 IDCLRKE-RVLTVGRDRSMQLWKVPEESRLVF--RAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       310 ~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      +.|+|++ .+++++.|+.|++||+.++.....  ..+...+.+++|+|++. +++++.||.|++||+.+++++..+....
T Consensus       155 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  234 (312)
T 4ery_A          155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK  234 (312)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC
Confidence            9999987 556899999999999998876533  34556789999999986 7799999999999999998888775432


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP  465 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~  465 (513)
                      ...                                  ..+......+++.+|++|+.||.|++||+.++ ..+..+..  
T Consensus       235 ~~~----------------------------------~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~--  277 (312)
T 4ery_A          235 NEK----------------------------------YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-EIVQKLQG--  277 (312)
T ss_dssp             CSS----------------------------------SCCCEEEECSSSCEEEECCTTSCEEEEETTTC-CEEEEECC--
T ss_pred             Cce----------------------------------EEEEEEEEeCCCcEEEEECCCCEEEEEECCCc-hhhhhhhc--
Confidence            210                                  00223334467889999999999999999887 44444443  


Q ss_pred             cccEEEEEEeecCCCEEEEEe-cCCCcccccccC
Q 010296          466 LVGFVNSLAFAKSGQFLIAGV-GQEPRLGRWGHL  498 (513)
Q Consensus       466 ~~~~v~~v~~sp~~~~l~~~~-~~dg~v~~W~~~  498 (513)
                      |...|.+++|+|++++|++++ +.|+.|++|+..
T Consensus       278 h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          278 HTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             cCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            788999999999999999884 379999999753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6e-44  Score=362.42  Aligned_cols=354  Identities=13%  Similarity=0.218  Sum_probs=266.4

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccc--cccC------------CChhhhc---
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGV--KYLW------------PSEEVLK---  205 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~--~~~~------------~~~~~~~---  205 (513)
                      +|+.........+.+|...|++++|+|+|++||+|+.|++|+|||+.++...  ..+.            +....+.   
T Consensus        43 l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~  122 (611)
T 1nr0_A           43 TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG  122 (611)
T ss_dssp             EEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred             EecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEE
Confidence            4556566677889999999999999999999999999999999999754322  1110            1111110   


Q ss_pred             ----------cCCCCCCCCCCCCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCC
Q 010296          206 ----------SHGAKDPQGRATKQSKHILALAVSSDGR-YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT  274 (513)
Q Consensus       206 ----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  274 (513)
                                ..........+.+|...|++++|+|++. .|++|+.|++|++||..+++++..+.+|...|++++|+|++
T Consensus       123 ~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg  202 (611)
T 1nr0_A          123 EGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG  202 (611)
T ss_dssp             CCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS
T ss_pred             CCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC
Confidence                      1111223345678999999999999987 69999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCcEEEEeCCCCceeEEee-------cccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee--------
Q 010296          275 SELFSGSFDRTVKIWNAEDRAYISTLF-------GHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL--------  338 (513)
Q Consensus       275 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~--------  338 (513)
                      ++|++++.|++|++||+.+++++..+.       +|...|.+++|+|++ .+++++.|++|++||+.++...        
T Consensus       203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~  282 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  282 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence            999999999999999999998888774       799999999999988 5669999999999999876432        


Q ss_pred             ------------------------------------EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEe
Q 010296          339 ------------------------------------VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       339 ------------------------------------~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                                                          .+.+|...|.+++|+|++. |++++.|++|++||+.++.....+
T Consensus       283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~  362 (611)
T 1nr0_A          283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF  362 (611)
T ss_dssp             GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS
T ss_pred             ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec
Confidence                                                2246778899999999986 789999999999999998776554


Q ss_pred             ecCCCcccCCCCcccCc--------CccccccCCCCCCCC-------------------------------------CCc
Q 010296          382 KNAHPLLDGLKNFEQDE--------GKISNGHSENGNLNP-------------------------------------GSY  416 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~-------------------------------------~~~  416 (513)
                      ...|........+....        ..+..+....+....                                     ...
T Consensus       363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~  442 (611)
T 1nr0_A          363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL  442 (611)
T ss_dssp             SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred             ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCce
Confidence            33232211111111110        001111100000000                                     000


Q ss_pred             CCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          417 HSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       417 ~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      ....+...+.+++|+|+|++|++|+.|++|+||++....  +..+....|...|++|+|+|+|++|+++ +.|++|++|+
T Consensus       443 ~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~--~~~~~~~~h~~~v~~v~fspdg~~las~-s~d~~v~~w~  519 (611)
T 1nr0_A          443 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS--VSEVKTIVHPAEITSVAFSNNGAFLVAT-DQSRKVIPYS  519 (611)
T ss_dssp             EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE--EEEEEEEECSSCEEEEEECTTSSEEEEE-ETTSCEEEEE
T ss_pred             eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc--eeeeeccCCCCceEEEEECCCCCEEEEE-cCCCCEEEEE
Confidence            001134558899999999999999999999999998752  2222224488899999999999999999 8999999999


Q ss_pred             cCC
Q 010296          497 HLP  499 (513)
Q Consensus       497 ~~~  499 (513)
                      ...
T Consensus       520 ~~~  522 (611)
T 1nr0_A          520 VAN  522 (611)
T ss_dssp             GGG
T ss_pred             cCC
Confidence            865

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.7e-44  Score=336.08  Aligned_cols=298  Identities=20%  Similarity=0.328  Sum_probs=241.6

Q ss_pred             cchhhhhccCCCeEEEEE-----CC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296          150 DEFRVLLKHRQSVTAVAL-----SE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI  223 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~-----s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (513)
                      .....+.+|.+.|++++|     ++ ++++|++|+.|++|+||++.........            ..+...+.+|...|
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~V   79 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHFV   79 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSCE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCce
Confidence            345678899999999999     77 9999999999999999999765421100            00111346899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee--
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF--  301 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--  301 (513)
                      ++++|+|++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... ....+.  
T Consensus        80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~  158 (343)
T 2xzm_R           80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEK  158 (343)
T ss_dssp             EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTT
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999743 333332  


Q ss_pred             -cccCCeEEEEeeCCC-----------eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEE
Q 010296          302 -GHQSEVLTIDCLRKE-----------RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIE  368 (513)
Q Consensus       302 -~~~~~v~~~~~~~~~-----------~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~  368 (513)
                       .|...|.++.|+|++           .+++++.|+.|++||........+..|...|.+++|+|++. |++|+.||.|+
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~  238 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL  238 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence             688899999999974           57799999999999966555557788999999999999986 78999999999


Q ss_pred             EEecCC-CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296          369 LWSLLR-KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR  447 (513)
Q Consensus       369 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~  447 (513)
                      |||+.. ..+...+...                                      ..|.+++|+|++.+|+++ .|+.|+
T Consensus       239 iwd~~~~~~~~~~~~~~--------------------------------------~~v~~v~~sp~~~~la~~-~d~~v~  279 (343)
T 2xzm_R          239 IWDILNLTYPQREFDAG--------------------------------------STINQIAFNPKLQWVAVG-TDQGVK  279 (343)
T ss_dssp             EEESSCCSSCSEEEECS--------------------------------------SCEEEEEECSSSCEEEEE-ESSCEE
T ss_pred             EEECCCCcccceeecCC--------------------------------------CcEEEEEECCCCCEEEEE-CCCCEE
Confidence            999944 3343333221                                      229999999999888765 577899


Q ss_pred             EEEeCCCCcce-eeeee---------cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          448 LWAIESETKDI-QPLYN---------LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       448 vwd~~~~~~~~-~~~~~---------~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      +|++.+..... ..+..         ..|...|++++|+|+|++|++| +.||.|++|++.++
T Consensus       280 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          280 IFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG-FTDGVIRTFSFETS  341 (343)
T ss_dssp             EEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE-ETTSEEEEEEEEEE
T ss_pred             EEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe-cCCceEEEEEEEcc
Confidence            99998763211 11110         1366789999999999999999 89999999987654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-44  Score=333.58  Aligned_cols=293  Identities=19%  Similarity=0.250  Sum_probs=229.6

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCcc--ccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKG--VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      ..++.+.+|.++|++++|+|+  +|++|+.|++|++|++..+..  ...+                 ...+|...|++++
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~-----------------~~~~h~~~v~~v~   65 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVL-----------------DETAHKKAIRSVA   65 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEE-----------------CTTCCCSCEEEEE
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEE-----------------ecCCccCCEEEEE
Confidence            456678899999999999998  999999999999999987532  2111                 0124899999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCC-------cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC----Cce
Q 010296          228 VSSDGRYLASGGLDRHIHLWDTRI-------QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED----RAY  296 (513)
Q Consensus       228 ~s~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~  296 (513)
                      |+|++++|++|+.|++|+||++..       .+.+..+.+|...|.+++|+|++++|++|+.|++|++||+..    .++
T Consensus        66 ~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~  145 (330)
T 2hes_X           66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC  145 (330)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEE
Confidence            999999999999999999999853       356778889999999999999999999999999999999953    245


Q ss_pred             eEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCe--e-eEEecCCCCeeEEEeecC--C-eEEEEeCCCCEEE
Q 010296          297 ISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEES--R-LVFRAPASSLECCCFISN--D-EFLSGSDDGSIEL  369 (513)
Q Consensus       297 ~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~--~-~~~~~~~~~v~~~~~~~~--~-~~~~~~~dg~i~i  369 (513)
                      +..+.+|...|.+++|+|++ .|++++.|++|++|++....  . ..+..|...|.+++|+|+  + .+++++.|++|++
T Consensus       146 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i  225 (330)
T 2hes_X          146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV  225 (330)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEE
T ss_pred             EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEE
Confidence            77788999999999999987 56689999999999987652  2 367789999999999998  4 4889999999999


Q ss_pred             EecCCCC--------eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296          370 WSLLRKK--------PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA  441 (513)
Q Consensus       370 wd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  441 (513)
                      |++..+.        +...+.                                    ..|...|.+++|++++ +|++++
T Consensus       226 w~~~~~~~~~~~~~~~~~~~~------------------------------------~~h~~~v~~v~~s~~~-~l~s~~  268 (330)
T 2hes_X          226 WKYMGDDEDDQQEWVCEAILP------------------------------------DVHKRQVYNVAWGFNG-LIASVG  268 (330)
T ss_dssp             EEEEEECTTSCEEEEEEEECC------------------------------------SCCSSCEEEEEECTTS-CEEEEE
T ss_pred             EEecCCCccccceeEEeeecc------------------------------------cccccceEEEEEcCCC-EEEEEe
Confidence            9986542        111111                                    2245569999999765 899999


Q ss_pred             CCCcEEEEEeCCCCcceeeeeecCccc-EEEEEEeec--CCCEEEEEecCCCcccccccCC
Q 010296          442 GNGSVRLWAIESETKDIQPLYNLPLVG-FVNSLAFAK--SGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       442 ~dg~v~vwd~~~~~~~~~~~~~~~~~~-~v~~v~~sp--~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      .||.|+||++.++...........|.. .|++++|+|  ++++|+++ +.||+|++|++..
T Consensus       269 ~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~-s~Dg~v~~W~~~~  328 (330)
T 2hes_X          269 ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATG-GDDGIVNFWSLEK  328 (330)
T ss_dssp             TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEE-ETTSEEEEEEC--
T ss_pred             CCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEe-cCCCcEEEEEecc
Confidence            999999999987621111111123655 899999999  68889988 9999999999764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.9e-43  Score=358.69  Aligned_cols=310  Identities=15%  Similarity=0.180  Sum_probs=252.1

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+..+......+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.....+..            ......+|...
T Consensus       174 lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~------------~~~~~~~h~~~  241 (611)
T 1nr0_A          174 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED------------DSLKNVAHSGS  241 (611)
T ss_dssp             EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC------------TTSSSCSSSSC
T ss_pred             EEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecc------------ccccccccCCC
Confidence            556666677788999999999999999999999999999999999998877654310            00112379999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceee-------------------------------------------ecc
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQ-------------------------------------------AFP  259 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-------------------------------------------~~~  259 (513)
                      |++++|+|++++|++++.|++|++||+.+++++.                                           .+.
T Consensus       242 V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~  321 (611)
T 1nr0_A          242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY  321 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence            9999999999999999999999999998776543                                           345


Q ss_pred             CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe-ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCee-
Q 010296          260 GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESR-  337 (513)
Q Consensus       260 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-  337 (513)
                      +|...|++++|+|++++|++++.|++|++||+.++.+...+ .+|...|.+++|++++.+++++.|+.+++|++..... 
T Consensus       322 gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~  401 (611)
T 1nr0_A          322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD  401 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC
T ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccc
Confidence            79999999999999999999999999999999998877665 5789999999999999999999999999999754321 


Q ss_pred             ----------------------------------------eEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCC
Q 010296          338 ----------------------------------------LVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKK  376 (513)
Q Consensus       338 ----------------------------------------~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~  376 (513)
                                                              .....+...+.+++|+|++. +++|+.|++|++|++.++.
T Consensus       402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~  481 (611)
T 1nr0_A          402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS  481 (611)
T ss_dssp             TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred             ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc
Confidence                                                    00112345678999999996 7799999999999998764


Q ss_pred             eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCc
Q 010296          377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETK  456 (513)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~  456 (513)
                      ......                                    ..|...|++++|+|+|++|++++.|++|++|++.+...
T Consensus       482 ~~~~~~------------------------------------~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~  525 (611)
T 1nr0_A          482 VSEVKT------------------------------------IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE  525 (611)
T ss_dssp             EEEEEE------------------------------------EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred             eeeeec------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc
Confidence            322111                                    12334499999999999999999999999999987323


Q ss_pred             ceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          457 DIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       457 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      .........|...|++++|+|+|++|+++ +.|++|++|++..+.
T Consensus       526 ~~~~~~~~~H~~~V~~v~fspdg~~lasg-s~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          526 LAHTNSWTFHTAKVACVSWSPDNVRLATG-SLDNSVIVWNMNKPS  569 (611)
T ss_dssp             ESCCCCCCCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTCTT
T ss_pred             eeeeeeeeecccceeEEEECCCCCEEEEE-ECCCcEEEEECCCcc
Confidence            32221111288999999999999999999 999999999987654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-42  Score=333.32  Aligned_cols=312  Identities=22%  Similarity=0.288  Sum_probs=240.6

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      +|.+.|+|++|+|+|++|++|+ +++++||++.++..+..+.......... ..........+...|++++|+|++++|+
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP-ENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccc-ccccccccCCCceeEEEEEECCCCCEEE
Confidence            6999999999999999999987 6899999999988776552211100000 0000001123344699999999999999


Q ss_pred             EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-C
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-K  315 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~  315 (513)
                      +|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++++++...+. +...+.+++|+| +
T Consensus       140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  218 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD  218 (393)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred             EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999998887776 667899999998 6


Q ss_pred             C-eEEEEeCCCcEEEEecCCCeeeEE--------ecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296          316 E-RVLTVGRDRSMQLWKVPEESRLVF--------RAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       316 ~-~~~~~~~d~~i~iwd~~~~~~~~~--------~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      + .+++++.|+.|++||+.++.....        ..|...|.+++|+|++. |++++.|+.|++||+.+...........
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  298 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  298 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence            6 566899999999999988766532        46788999999999986 7899999999999998754322211000


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP  465 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~  465 (513)
                      ..            .             .......|...|.+++|+|++.+|++|+.||.|++||+.++ ..+..+..  
T Consensus       299 ~~------------~-------------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~--  350 (393)
T 1erj_A          299 SG------------T-------------CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQG--  350 (393)
T ss_dssp             --------------C-------------EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEEC--
T ss_pred             CC------------c-------------ceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECC--
Confidence            00            0             00000345566999999999999999999999999999987 44444443  


Q ss_pred             cccEEEEEEeec------CCCEEEEEecCCCcccccccCCC
Q 010296          466 LVGFVNSLAFAK------SGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       466 ~~~~v~~v~~sp------~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      |.+.|.+++|+|      ++.+|+++ +.||+|++|+....
T Consensus       351 h~~~v~~v~~~~~~~~~p~~~~l~sg-s~Dg~i~iW~~~~~  390 (393)
T 1erj_A          351 HRNSVISVAVANGSSLGPEYNVFATG-SGDCKARIWKYKKI  390 (393)
T ss_dssp             CSSCEEEEEECSSCTTCTTCEEEEEE-ETTSEEEEEEEEEC
T ss_pred             CCCCEEEEEecCCcCcCCCCCEEEEE-CCCCcEEECccccc
Confidence            888999999886      67888888 99999999987544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.5e-42  Score=323.01  Aligned_cols=300  Identities=22%  Similarity=0.350  Sum_probs=249.2

Q ss_pred             cccchhhhhccCCCeEEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296          148 ATDEFRVLLKHRQSVTAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL  226 (513)
Q Consensus       148 ~~~~~~~~~~h~~~V~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (513)
                      ......+|++|++.|++|+|+|+ +++|+||+.|++|+|||+.........              +...+.+|...|.++
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~   92 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDV   92 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEE
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEE
Confidence            33445678999999999999997 689999999999999999876543211              111346899999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce-eEEeecccC
Q 010296          227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY-ISTLFGHQS  305 (513)
Q Consensus       227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~  305 (513)
                      +|+|++++|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+..... ...+.+|..
T Consensus        93 ~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~  172 (340)
T 4aow_A           93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE  172 (340)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred             EECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence            9999999999999999999999999998888888999999999999999999999999999999977554 344567889


Q ss_pred             CeEEEEeeCCC---eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEE
Q 010296          306 EVLTIDCLRKE---RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       306 ~v~~~~~~~~~---~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~  380 (513)
                      .+..++|++++   .+++++.|+.|++|++.+.... .+..|...|.+++|+|++. |++|+.||.|++||+.+.+++..
T Consensus       173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence            99999998753   4568999999999999988776 5677889999999999986 77999999999999999998887


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP  460 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~  460 (513)
                      +....                                      .|.+++|+|++.++ +++.|+.|+|||+... ..+..
T Consensus       253 ~~~~~--------------------------------------~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~-~~~~~  292 (340)
T 4aow_A          253 LDGGD--------------------------------------IINALCFSPNRYWL-CAATGPSIKIWDLEGK-IIVDE  292 (340)
T ss_dssp             EECSS--------------------------------------CEEEEEECSSSSEE-EEEETTEEEEEETTTT-EEEEE
T ss_pred             ecCCc--------------------------------------eEEeeecCCCCcee-eccCCCEEEEEECCCC-eEEEe
Confidence            76432                                      29999999987654 5667999999999876 22222


Q ss_pred             ee-------ecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          461 LY-------NLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       461 ~~-------~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      +.       ...|...|++++|+|+|++|+++ +.||.|+||++.++.|
T Consensus       293 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          293 LKQEVISTSSKAEPPQCTSLAWSADGQTLFAG-YTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             ECCC-------CCCCCEEEEEECTTSSEEEEE-ETTSCEEEEEEEC---
T ss_pred             ccccceeeeccCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEeCCCcCC
Confidence            21       12367889999999999999998 8999999999988753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.4e-41  Score=314.72  Aligned_cols=287  Identities=16%  Similarity=0.264  Sum_probs=248.1

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR  233 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  233 (513)
                      ...+|...|++++|+|++++|++++ ||.|++|++.++.....+.              ......|...|.+++|+|+++
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~  110 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS--------------QLDCLNRDNYIRSCKLLPDGC  110 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE--------------EEECSCTTSBEEEEEECTTSS
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee--------------cccccCCCCcEEEEEEcCCCC
Confidence            3447999999999999999999999 9999999998776433220              001226888999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCcc--eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEE
Q 010296          234 YLASGGLDRHIHLWDTRIQE--HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID  311 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  311 (513)
                      +|++++.+|.|++|++.+++  ....+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++
T Consensus       111 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~  190 (337)
T 1gxr_A          111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  190 (337)
T ss_dssp             EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEE
Confidence            99999999999999999887  6677888999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCccc
Q 010296          312 CLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLD  389 (513)
Q Consensus       312 ~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  389 (513)
                      |+|++ .+++++.++.|++||+.+........+...+.+++|+|++. +++++.++.|++|++.+++....         
T Consensus       191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~---------  261 (337)
T 1gxr_A          191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL---------  261 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE---------
T ss_pred             ECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE---------
Confidence            99987 56688899999999999998887777888999999999986 77899999999999998765432         


Q ss_pred             CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccE
Q 010296          390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGF  469 (513)
Q Consensus       390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  469 (513)
                                                   ..|...|.+++|+|++++|++++.||.|++|++.++.. +   ....+...
T Consensus       262 -----------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-~---~~~~~~~~  308 (337)
T 1gxr_A          262 -----------------------------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-I---FQSKESSS  308 (337)
T ss_dssp             -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-E---EEEECSSC
T ss_pred             -----------------------------cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE-E---EEecCCCc
Confidence                                         22334499999999999999999999999999998732 2   23347888


Q ss_pred             EEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          470 VNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       470 v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      |.+++|+|++++|+++ +.||.|++|++.
T Consensus       309 v~~~~~s~~~~~l~~~-~~dg~i~iw~~~  336 (337)
T 1gxr_A          309 VLSCDISVDDKYIVTG-SGDKKATVYEVI  336 (337)
T ss_dssp             EEEEEECTTSCEEEEE-ETTSCEEEEEEE
T ss_pred             EEEEEECCCCCEEEEe-cCCCeEEEEEEe
Confidence            9999999999999999 899999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.9e-41  Score=343.10  Aligned_cols=283  Identities=25%  Similarity=0.403  Sum_probs=248.6

Q ss_pred             ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ...+..+.+|...|++++|+|++++|++++.|++|++|++.......                    +.+|...|.+++|
T Consensus       293 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~--------------------~~~~~~~v~~~~~  352 (577)
T 2ymu_A          293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT--------------------LTGHSSSVWGVAF  352 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE--------------------ECCCSSCEEEEEE
T ss_pred             CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEE--------------------EeCCCCCEEEEEE
Confidence            35566788999999999999999999999999999999987544322                    3578889999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      +|++++|++|+.++.|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++|+. +++.+..+.+|...|.
T Consensus       353 s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~  430 (577)
T 2ymu_A          353 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW  430 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEE
T ss_pred             CCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeE
Confidence            999999999999999999995 57788889999999999999999999999999999999996 5678888999999999


Q ss_pred             EEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCC
Q 010296          309 TIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHP  386 (513)
Q Consensus       309 ~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  386 (513)
                      +++|+|++ .+++++.|+.|++|++.......+..|...+.+++|+|++. |++++.|+.|++|+. +++++..+..   
T Consensus       431 ~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~---  506 (577)
T 2ymu_A          431 GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG---  506 (577)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC---
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC---
Confidence            99999987 55588999999999987766668889999999999999986 779999999999995 6777777643   


Q ss_pred             cccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCc
Q 010296          387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPL  466 (513)
Q Consensus       387 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~  466 (513)
                                                        |...|++++|+|++++|++++.||.|+|||+. + ..+..+..  |
T Consensus       507 ----------------------------------h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~-~~~~~~~~--h  548 (577)
T 2ymu_A          507 ----------------------------------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTG--H  548 (577)
T ss_dssp             ----------------------------------CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-S-CEEEEEEC--C
T ss_pred             ----------------------------------CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-C-CEEEEEcC--C
Confidence                                              33449999999999999999999999999964 3 34555543  8


Q ss_pred             ccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          467 VGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       467 ~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      .+.|++++|+|||++|+++ +.|++|++||
T Consensus       549 ~~~v~~~~fs~dg~~l~s~-~~D~~i~~Wd  577 (577)
T 2ymu_A          549 SSSVWGVAFSPDGQTIASA-SSDKTVKLWN  577 (577)
T ss_dssp             SSCEEEEEECTTSSCEEEE-ETTSCEEEEC
T ss_pred             CCCEEEEEEcCCCCEEEEE-eCCCEEEEeC
Confidence            8999999999999999998 8999999997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.8e-41  Score=324.98  Aligned_cols=307  Identities=14%  Similarity=0.140  Sum_probs=248.1

Q ss_pred             ccchhhhhccCCCeEEEEECCCC-CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDD-SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      ....+.+.+|.+.|++++|+|++ ++|++|+.||.|+||++.++.....+                 ...+|...|.+++
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~  125 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMK  125 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEE
Confidence            34455778999999999999999 99999999999999999988766544                 2347899999999


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEeCCCcceeeeccC---cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc
Q 010296          228 VSS-DGRYLASGGLDRHIHLWDTRIQEHIQAFPG---HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH  303 (513)
Q Consensus       228 ~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  303 (513)
                      |+| ++.+|++++.|+.|++||+.+ ..+..+..   |...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|
T Consensus       126 ~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h  203 (383)
T 3ei3_B          126 FNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLH  203 (383)
T ss_dssp             EETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECS
T ss_pred             eCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccC
Confidence            999 789999999999999999986 44445443   4588999999999999999999999999999 57788889999


Q ss_pred             cCCeEEEEeeCCCe--EEEEeCCCcEEEEecCC----CeeeEEecCCCCeeEEEeec-CCe-EEEEeCCCCEEEEecCCC
Q 010296          304 QSEVLTIDCLRKER--VLTVGRDRSMQLWKVPE----ESRLVFRAPASSLECCCFIS-NDE-FLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       304 ~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~----~~~~~~~~~~~~v~~~~~~~-~~~-~~~~~~dg~i~iwd~~~~  375 (513)
                      ...|.+++|+|++.  +++++.|+.|++||+++    ........|...+.+++|+| ++. |++++.|+.|++||+.++
T Consensus       204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence            99999999999874  67999999999999987    55665567899999999999 875 789999999999999998


Q ss_pred             CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC
Q 010296          376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET  455 (513)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~  455 (513)
                      +.+..+.........      ....+..           .   -.....+..++|+|++++  +|+.||.|+|||+.++ 
T Consensus       284 ~~~~~~~~~~~~~~~------~~~~~~~-----------~---~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~-  340 (383)
T 3ei3_B          284 SKPDQIIIHPHRQFQ------HLTPIKA-----------T---WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG-  340 (383)
T ss_dssp             TSCSEEEECCBCCCT------TSCCCCC-----------E---ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC-
T ss_pred             ccccccccccccccc------cccceEE-----------e---ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC-
Confidence            877666543211000      0000000           0   011123677889999988  8999999999999987 


Q ss_pred             cceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          456 KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       456 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      ..+..+....+.+.+.+++|+|++++|+++ + ||.|++|++..
T Consensus       341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~-s-d~~i~iw~~~~  382 (383)
T 3ei3_B          341 GLVHQLRDPNAAGIISLNKFSPTGDVLASG-M-GFNILIWNRED  382 (383)
T ss_dssp             CEEEEECBTTBCSCCCEEEECTTSSEEEEE-E-TTEEEEEECC-
T ss_pred             ceeeeecCCCCCceEEEEEEecCccEEEEe-c-CCcEEEEecCC
Confidence            445555544467788888999999999999 6 89999999754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3e-41  Score=325.59  Aligned_cols=254  Identities=21%  Similarity=0.355  Sum_probs=231.6

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+.......+.+.+|.+.|++++|+|++++|++|+.|++|+|||+.++..+..+                   .+|...
T Consensus       134 vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~-------------------~~h~~~  194 (410)
T 1vyh_C          134 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-------------------HGHDHN  194 (410)
T ss_dssp             EEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC-------------------CCCSSC
T ss_pred             EEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE-------------------cCCCCC
Confidence            5777777788899999999999999999999999999999999999988776643                   688999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      |.+++|+|++.+|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.+|++|+.|++|++||+.++.+...+.+
T Consensus       195 V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~  274 (410)
T 1vyh_C          195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE  274 (410)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCeEEEEeeCC--------------------C-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EE
Q 010296          303 HQSEVLTIDCLRK--------------------E-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FL  359 (513)
Q Consensus       303 ~~~~v~~~~~~~~--------------------~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~  359 (513)
                      |...|.+++|+|+                    + .+++++.|+.|++||+.++..+ .+.+|...|.+++|+|++. |+
T Consensus       275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~  354 (410)
T 1vyh_C          275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL  354 (410)
T ss_dssp             CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE
T ss_pred             CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEE
Confidence            9999999999985                    2 5779999999999999988766 6678899999999999986 88


Q ss_pred             EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE
Q 010296          360 SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS  439 (513)
Q Consensus       360 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  439 (513)
                      +|+.||.|++||+.+++++..+..                                     |...|++++|+|++.+|++
T Consensus       355 s~s~D~~i~vwd~~~~~~~~~~~~-------------------------------------h~~~v~~l~~~~~~~~l~s  397 (410)
T 1vyh_C          355 SCADDKTLRVWDYKNKRCMKTLNA-------------------------------------HEHFVTSLDFHKTAPYVVT  397 (410)
T ss_dssp             EEETTTEEEEECCTTSCCCEEEEC-------------------------------------CSSCEEEEEECSSSSCEEE
T ss_pred             EEeCCCeEEEEECCCCceEEEEcC-------------------------------------CCCcEEEEEEcCCCCEEEE
Confidence            999999999999999988887743                                     3344999999999999999


Q ss_pred             ecCCCcEEEEEeC
Q 010296          440 GAGNGSVRLWAIE  452 (513)
Q Consensus       440 g~~dg~v~vwd~~  452 (513)
                      |+.||+|+||+++
T Consensus       398 gs~D~~i~vW~~r  410 (410)
T 1vyh_C          398 GSVDQTVKVWECR  410 (410)
T ss_dssp             EETTSEEEEEC--
T ss_pred             EeCCCcEEEEeCC
Confidence            9999999999863

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.5e-41  Score=345.33  Aligned_cols=291  Identities=23%  Similarity=0.394  Sum_probs=240.7

Q ss_pred             hhhhccCCCeEEEEECCCC-CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          153 RVLLKHRQSVTAVALSEDD-SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      ..+.+|++.|++|+|+|++ .+|+||+.|++|+||++.........              ....+.+|...|.+++|+|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~~  441 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSSD  441 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECTT
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECCC
Confidence            4578999999999999874 78999999999999999865422100              01134689999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe---ecccCCeE
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL---FGHQSEVL  308 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~  308 (513)
                      +++|++|+.||+|+|||+.++..+..+.+|...|.+++|+|++++|++++.|++|++||+.........   .+|...|.
T Consensus       442 g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~  521 (694)
T 3dm0_A          442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS  521 (694)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence            999999999999999999999999999999999999999999999999999999999998665433322   46888999


Q ss_pred             EEEeeCCC---eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          309 TIDCLRKE---RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       309 ~~~~~~~~---~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      +++|+|++   .+++++.|++|++||+.+.... .+..|...|.+++|+|++. |++++.||.|+|||+.+++.+..+..
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~  601 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA  601 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Confidence            99999975   5789999999999999987765 5678899999999999986 77999999999999999987765532


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                      .                                      ..|.+++|+|++.+|++++ ++.|+|||+.++ ..+..+..
T Consensus       602 ~--------------------------------------~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~~  641 (694)
T 3dm0_A          602 N--------------------------------------SVIHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLKV  641 (694)
T ss_dssp             S--------------------------------------SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEECC
T ss_pred             C--------------------------------------CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhcc
Confidence            1                                      2299999999998888776 456999999887 33322211


Q ss_pred             c-----------------CcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          464 L-----------------PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       464 ~-----------------~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .                 .+...+++++|+|+|++|+++ +.||.|++|++.
T Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg-s~Dg~i~iW~i~  692 (694)
T 3dm0_A          642 DLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG-YTDGVIRVWGIG  692 (694)
T ss_dssp             CCC----------------CCCCEEEEEECTTSSEEEEE-ETTSEEEEEEC-
T ss_pred             ccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE-cCCCeEEEEecc
Confidence            0                 011237899999999999999 999999999874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-40  Score=314.53  Aligned_cols=289  Identities=17%  Similarity=0.232  Sum_probs=252.1

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      .....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+                   .+|...|++++|+
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------------------~~h~~~v~~~~~~   83 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-------------------DGHTGTIWSIDVD   83 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-------------------CCCSSCEEEEEEC
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-------------------hhcCCcEEEEEEc
Confidence            344568899999999999999999999999999999999998877654                   5789999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCc---------
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD-----RTVKIWNAEDRA---------  295 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~---------  295 (513)
                      |++++|++++.||.|++||+.+++.+..+. +...|.+++|+|++++|++++.+     +.|++|++....         
T Consensus        84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~  162 (369)
T 3zwl_B           84 CFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS  162 (369)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence            999999999999999999999999998888 88999999999999999999998     999999997653         


Q ss_pred             --eeEEeecccC--CeEEEEeeCCC-eEEEEeCCCcEEEEecCC-Ceee-EEecCCCCeeEEEeecCCe-EEEEeCCCCE
Q 010296          296 --YISTLFGHQS--EVLTIDCLRKE-RVLTVGRDRSMQLWKVPE-ESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSI  367 (513)
Q Consensus       296 --~~~~~~~~~~--~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i  367 (513)
                        .+..+..|..  .+.+++|+|++ .+++++.++.|++||+.+ .... .+..+...+.+++|+|++. |++++.||.|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  242 (369)
T 3zwl_B          163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNS  242 (369)
T ss_dssp             SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceE
Confidence              3344455655  89999999987 556888999999999998 4444 6677889999999999986 7899999999


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC---
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG---  444 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg---  444 (513)
                      ++||+.+++.+..+....                                      .+.+++|+|+++++++++.++   
T Consensus       243 ~v~d~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~  284 (369)
T 3zwl_B          243 FLVDVSTLQVLKKYETDC--------------------------------------PLNTAVITPLKEFIILGGGQEAKD  284 (369)
T ss_dssp             EEEETTTCCEEEEEECSS--------------------------------------CEEEEEECSSSSEEEEEECCC---
T ss_pred             EEEECCCCceeeeecCCC--------------------------------------CceeEEecCCCceEEEeecCCCce
Confidence            999999999888876322                                      299999999999999999988   


Q ss_pred             -----------cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          445 -----------SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       445 -----------~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                                 .|++|++.++ ..+..+..  |...|++++|+|++++|+++ +.||.|++|++..+
T Consensus       285 ~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~--~~~~v~~~~~s~~~~~l~s~-~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          285 VTTTSANEGKFEARFYHKIFE-EEIGRVQG--HFGPLNTVAISPQGTSYASG-GEDGFIRLHHFEKS  347 (369)
T ss_dssp             ----------CEEEEEETTTC-CEEEEEEC--CSSCEEEEEECTTSSEEEEE-ETTSEEEEEEECHH
T ss_pred             EEEEecCCCcceeEEEecCCC-cchhheec--ccCcEEEEEECCCCCEEEEE-cCCCeEEEEECccc
Confidence                       8999999887 44444433  78899999999999999999 89999999998654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.5e-41  Score=323.94  Aligned_cols=309  Identities=15%  Similarity=0.172  Sum_probs=248.1

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ..+.+.+|.+.|++|+|+|  ++|++|+.||+|+||++.++.....+             .....+.+|...|++++|+|
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~   72 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK-------------DKSYSHFVHKSGLHHVDVLQ   72 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG-------------GGEEEEECCTTCEEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCC-------------CcceEEecCCCcEEEEEEec
Confidence            3456789999999999999  89999999999999999987721100             00012357899999999999


Q ss_pred             C----C---CEEEEEeCCCcEEEEeCCCcce-----eeeccCc-----CCCeEEEEEe----cCCCe-EEEEeCCCcEEE
Q 010296          231 D----G---RYLASGGLDRHIHLWDTRIQEH-----IQAFPGH-----RGPVSCLTFR----QGTSE-LFSGSFDRTVKI  288 (513)
Q Consensus       231 ~----~---~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~i  288 (513)
                      +    +   .+|++++.||.|++|++.+++.     +..+..|     ...|.+++|+    |++++ |++++.||.|++
T Consensus        73 ~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i  152 (397)
T 1sq9_A           73 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI  152 (397)
T ss_dssp             EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred             ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEE
Confidence            9    9   9999999999999999998887     8888888     5999999999    99999 999999999999


Q ss_pred             EeCCC------CceeE-----Ee-------ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEec---C---
Q 010296          289 WNAED------RAYIS-----TL-------FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRA---P---  343 (513)
Q Consensus       289 wd~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~---~---  343 (513)
                      ||+.+      ++.+.     .+       ..|...|.+++|+|++.+++++.++.|++||+++...+ .+..   |   
T Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~  232 (397)
T 1sq9_A          153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN  232 (397)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred             EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence            99998      66665     66       34888999999999885558889999999999988766 4555   6   


Q ss_pred             CCCeeEEEeecCCe-EEEEeCC---CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCC
Q 010296          344 ASSLECCCFISNDE-FLSGSDD---GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSS  419 (513)
Q Consensus       344 ~~~v~~~~~~~~~~-~~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  419 (513)
                      ...+.+++|+|++. |++++.|   |.|++||+.+++++..+........                        ......
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~------------------------~~~~~~  288 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ------------------------ASLGEF  288 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------------------------------CCB
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccc------------------------cccccc
Confidence            88999999999885 7789999   9999999999998888754210000                        000002


Q ss_pred             CCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec----Cc---------------ccEEEEEEeecCC-
Q 010296          420 SAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL----PL---------------VGFVNSLAFAKSG-  479 (513)
Q Consensus       420 ~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~----~~---------------~~~v~~v~~sp~~-  479 (513)
                      .|...|.+++|+|++++|++++.||.|+|||+.++ ..+..+...    .|               ...|++++|+|++ 
T Consensus       289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence            25566999999999999999999999999999887 444444410    24               7899999999998 


Q ss_pred             ---------CEEEEEecCCCcccccccCCC
Q 010296          480 ---------QFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       480 ---------~~l~~~~~~dg~v~~W~~~~~  500 (513)
                               ++|+++ +.||.|++|++..+
T Consensus       368 ~~~~~~~~~~~l~s~-~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          368 RSGMGADLNESLCCV-CLDRSIRWFREAGG  396 (397)
T ss_dssp             SBSTTCTTSCEEEEE-ETTTEEEEEEEEC-
T ss_pred             cccccccccceEEEe-cCCCcEEEEEcCCC
Confidence                     788888 89999999998654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.5e-41  Score=318.96  Aligned_cols=298  Identities=16%  Similarity=0.203  Sum_probs=241.9

Q ss_pred             hhhhccCCCeEEEEECCCCCeEE-EEeC---CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGF-SASK---DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~-t~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      +.+.+|...|++++|+|++..|+ +|+.   ||.|+||++.++......                  ..+|...|++++|
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v~~~~~   73 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPIKCGTF   73 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCEEEEEC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcEEEEEE
Confidence            34568999999999999996555 5665   999999999988764432                  2368889999999


Q ss_pred             cCC---CCEEEEEeCCCcEEEEeCCCcc-eeeeccCcCCCeEEEEE------ecCCCeEEEEeCCCcEEEEeCCCCc-ee
Q 010296          229 SSD---GRYLASGGLDRHIHLWDTRIQE-HIQAFPGHRGPVSCLTF------RQGTSELFSGSFDRTVKIWNAEDRA-YI  297 (513)
Q Consensus       229 s~~---~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~-~~  297 (513)
                      +|+   +.+|++|+.||.|++|++.+++ .+..+.+|...|.++.|      +|++++|++++.||.|++||+.++. .+
T Consensus        74 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~  153 (357)
T 3i2n_A           74 GATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV  153 (357)
T ss_dssp             TTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS
T ss_pred             cCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc
Confidence            998   6999999999999999999988 88899999999999965      6789999999999999999999887 67


Q ss_pred             EEeecccC----CeEEEE----eeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeec---CC-eEEEEeCC
Q 010296          298 STLFGHQS----EVLTID----CLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFIS---ND-EFLSGSDD  364 (513)
Q Consensus       298 ~~~~~~~~----~v~~~~----~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~---~~-~~~~~~~d  364 (513)
                      ..+..+.+    .+.++.    |++++ .+++++.++.|++||+++........+...+.+++|+|   ++ .+++++.|
T Consensus       154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  233 (357)
T 3i2n_A          154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE  233 (357)
T ss_dssp             EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEEST
T ss_pred             eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCC
Confidence            77765554    788888    66776 45588899999999999999888888899999999998   55 48899999


Q ss_pred             CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EEEEecCC
Q 010296          365 GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LAASGAGN  443 (513)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~d  443 (513)
                      |.|++||+.+++++..+.....                                ..|...|++++|+|+++ +|++|+.|
T Consensus       234 g~i~i~d~~~~~~~~~~~~~~~--------------------------------~~~~~~v~~~~~~~~~~~~l~~~~~d  281 (357)
T 3i2n_A          234 GKFHVFDMRTQHPTKGFASVSE--------------------------------KAHKSTVWQVRHLPQNRELFLTAGGA  281 (357)
T ss_dssp             TEEEEEEEEEEETTTEEEEEEE--------------------------------ECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             CeEEEEeCcCCCcccceeeecc--------------------------------CCCcCCEEEEEECCCCCcEEEEEeCC
Confidence            9999999988765544431000                                23445599999999998 89999999


Q ss_pred             CcEEEEEeCCCCcce---------------eee-eecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          444 GSVRLWAIESETKDI---------------QPL-YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       444 g~v~vwd~~~~~~~~---------------~~~-~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      |.|++|++.......               ..+ ....|...|++++|+|++++|+++++.||.|++|++.+.
T Consensus       282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            999999998653221               112 222378899999999999999954499999999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-40  Score=305.28  Aligned_cols=287  Identities=21%  Similarity=0.298  Sum_probs=244.3

Q ss_pred             ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      .+..+.+.+|.+.|++++| |++.+|++|+.||.|++|++.++.....+                   ..|...|.+++|
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-------------------~~~~~~v~~~~~   67 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-------------------YTGQGFLNSVCY   67 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-------------------EECSSCEEEEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-------------------ecCCccEEEEEE
Confidence            3566788999999999999 99999999999999999999887766543                   578889999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCc---ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQ---EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS  305 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  305 (513)
                      +|++++|++++.+|.|++|++...   +.+..+.+|...|.+++|  ++++|++++.||.|++||  .+..+..+..|..
T Consensus        68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~  143 (313)
T 3odt_A           68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA  143 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred             CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence            999999999999999999998654   567788889999999999  567999999999999999  6777888889999


Q ss_pred             CeEEEEeeC-C-CeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          306 EVLTIDCLR-K-ERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       306 ~v~~~~~~~-~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      .+.++.|.| + ..+++++.++.|++||...........+...+.+++|+|++.+++++.+|.|++||+.+++++..+..
T Consensus       144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~  223 (313)
T 3odt_A          144 SVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEG  223 (313)
T ss_dssp             CEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhc
Confidence            999999988 4 47779999999999994433222333388899999999999999999999999999999998888753


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                                                           |...|++++|+|++ .|++++.||.|++||+.++ ..+..+..
T Consensus       224 -------------------------------------~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~-~~~~~~~~  264 (313)
T 3odt_A          224 -------------------------------------HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG-SLKQVITL  264 (313)
T ss_dssp             -------------------------------------CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC-CEEEEEEC
T ss_pred             -------------------------------------CCceEEEEEEecCC-CEEEEecCCEEEEEECCCC-ceeEEEec
Confidence                                                 23349999999999 6899999999999999987 44444433


Q ss_pred             cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                        |...|++++|+|+++ ++++ +.||.|++|++..+..
T Consensus       265 --~~~~i~~~~~~~~~~-~~~~-~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          265 --PAISIWSVDCMSNGD-IIVG-SSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             --SSSCEEEEEECTTSC-EEEE-ETTSCEEEEESCGGGC
T ss_pred             --cCceEEEEEEccCCC-EEEE-eCCCcEEEEeCCCCce
Confidence              677899999999999 4555 7899999999876543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.4e-40  Score=304.42  Aligned_cols=247  Identities=16%  Similarity=0.305  Sum_probs=219.1

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      .+.+|...|++++|+|++++|++|+.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++||+.++
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~   87 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG   87 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecC-C-eEEEEeCCCCEEE
Q 010296          295 AYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISN-D-EFLSGSDDGSIEL  369 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~-~-~~~~~~~dg~i~i  369 (513)
                      +.+..+.+|...|.+++|+|++ .+++++.|++|++||+.++...  .+..|...|.+++|+|. + .|++|+.|++|++
T Consensus        88 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i  167 (304)
T 2ynn_A           88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV  167 (304)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred             cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            9999999999999999999987 5669999999999999876433  56788999999999994 4 5889999999999


Q ss_pred             EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec--CCCEEEEecCCCcEE
Q 010296          370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG--GSDLAASGAGNGSVR  447 (513)
Q Consensus       370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~g~~dg~v~  447 (513)
                      ||+.++.+...+...+                                    ...+..+.|+|  ++.+|++|+.||+|+
T Consensus       168 wd~~~~~~~~~~~~~~------------------------------------~~~v~~~~~~~~~~~~~l~s~s~D~~i~  211 (304)
T 2ynn_A          168 WSLGQSTPNFTLTTGQ------------------------------------ERGVNYVDYYPLPDKPYMITASDDLTIK  211 (304)
T ss_dssp             EETTCSSCSEEEECCC------------------------------------TTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred             EECCCCCccceeccCC------------------------------------cCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence            9999887776665332                                    23388888886  778999999999999


Q ss_pred             EEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          448 LWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       448 vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      |||+.++ ..+..+..  |...|.+++|+|++++|+++ +.||+|++|+..+..
T Consensus       212 iWd~~~~-~~~~~~~~--h~~~v~~~~~~p~~~~l~s~-s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          212 IWDYQTK-SCVATLEG--HMSNVSFAVFHPTLPIIISG-SEDGTLKIWNSSTYK  261 (304)
T ss_dssp             EEETTTT-EEEEEEEC--CSSCEEEEEECSSSSEEEEE-ETTSCEEEEETTTCC
T ss_pred             EEeCCCC-ccceeeCC--CCCCEEEEEECCCCCEEEEE-cCCCeEEEEECCCCc
Confidence            9999987 44444543  88899999999999999999 999999999987654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.8e-40  Score=306.10  Aligned_cols=245  Identities=20%  Similarity=0.297  Sum_probs=223.7

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      ...+.+|...|.+++|+|++.++++++.|++|++||+.+++.+..+                   ..|...+.+++|+|+
T Consensus        73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~-------------------~~~~~~~~~~~~spd  133 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI-------------------DAGPVDAWTLAFSPD  133 (321)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-------------------ECCTTCCCCEEECTT
T ss_pred             eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEE-------------------eCCCccEEEEEECCC
Confidence            4467899999999999999999999999999999999998877654                   456777899999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEE
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID  311 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  311 (513)
                      +++|++|+.+|.|++|++.+++....+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+.+|..+|.+++
T Consensus       134 g~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~  213 (321)
T 3ow8_A          134 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT  213 (321)
T ss_dssp             SSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEE
T ss_pred             CCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCe-EEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296          312 CLRKER-VLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLL  388 (513)
Q Consensus       312 ~~~~~~-~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  388 (513)
                      |+|++. +++++.|+.|++||++..... .+..|...|.+++|+|++. |++++.|++|+|||+.+++++..+..     
T Consensus       214 ~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----  288 (321)
T 3ow8_A          214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD-----  288 (321)
T ss_dssp             ECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-----
T ss_pred             EcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC-----
Confidence            999885 558889999999999887665 6678889999999999985 88999999999999999999888743     


Q ss_pred             cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                                                      |...|.+++|+|++++|++++.||.|+|||+.
T Consensus       289 --------------------------------h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          289 --------------------------------HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             --------------------------------CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             --------------------------------CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence                                            33449999999999999999999999999963

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.8e-41  Score=317.70  Aligned_cols=306  Identities=19%  Similarity=0.293  Sum_probs=241.8

Q ss_pred             hhhccCCCeEEEEECCC----CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          154 VLLKHRQSVTAVALSED----DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ...+|.++|++++|+|+    ...+++++.++.|++|++.++..+..+.       .+       ....|...|++++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~-------~~-------~~~~~~~~v~~~~~~   78 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ-------SY-------VDADADENFYTCAWT   78 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE-------EE-------ECSCTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee-------ec-------cccCCCCcEEEEEec
Confidence            34489999999999984    5567777777899999999877655431       00       112367889999999


Q ss_pred             CC----CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCCceeEEe---e
Q 010296          230 SD----GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDRAYISTL---F  301 (513)
Q Consensus       230 ~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~  301 (513)
                      |+    +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+   .
T Consensus        79 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  158 (366)
T 3k26_A           79 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE  158 (366)
T ss_dssp             ECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT
T ss_pred             cCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc
Confidence            98    67999999999999999999999999999999999999999 8999999999999999999999988887   6


Q ss_pred             cccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-----------------------------EEecCCCCeeEEE
Q 010296          302 GHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-----------------------------VFRAPASSLECCC  351 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-----------------------------~~~~~~~~v~~~~  351 (513)
                      .|...|.+++|+|++ .+++++.|+.|++||+.+....                             ....|...|.+++
T Consensus       159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  238 (366)
T 3k26_A          159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR  238 (366)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred             cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence            899999999999987 5668999999999999875432                             1223788999999


Q ss_pred             eecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe
Q 010296          352 FISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC  431 (513)
Q Consensus       352 ~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  431 (513)
                      |+ ...+++++.||.|++||+.++............            ....           ......|...|++++|+
T Consensus       239 ~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~------------~~~~-----------~~~~~~~~~~v~~~~~s  294 (366)
T 3k26_A          239 WL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES------------NVTI-----------LGRFDYSQCDIWYMRFS  294 (366)
T ss_dssp             EE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCC------------CEEE-----------EEEEECSSCCSSCCCCE
T ss_pred             Ec-CCEEEEEecCCEEEEEeCCCccccccccccCCc------------chhe-----------eccccccCCcEEEEEEc
Confidence            99 557899999999999999876541110000000            0000           00002344558999999


Q ss_pred             cC--CCEEEEecCCCcEEEEEeCCCCcce---eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          432 GG--SDLAASGAGNGSVRLWAIESETKDI---QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       432 ~~--~~~l~~g~~dg~v~vwd~~~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      |+  +++|++|+.||.|++||+.++....   ..+....+...|++++|+|++++|+++ +.||.|++|++.
T Consensus       295 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~  365 (366)
T 3k26_A          295 MDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAV-CDDASIWRWDRL  365 (366)
T ss_dssp             ECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEE-ETTSEEEEEEC-
T ss_pred             CCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEE-eCCCEEEEEEec
Confidence            99  9999999999999999999873221   133332237899999999999999999 899999999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-39  Score=328.47  Aligned_cols=286  Identities=26%  Similarity=0.409  Sum_probs=240.4

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      +.+.|.+|++.|+||+|+|+|++||+|+.|++|+|||. +++.+..+                   .+|...|++++|+|
T Consensus         8 e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l-------------------~gh~~~V~~l~fsp   67 (577)
T 2ymu_A            8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-------------------TGHSSSVWGVAFSP   67 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-------------------ECCSSCEEEEEECT
T ss_pred             EeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEE-------------------eCCCCCEEEEEECC
Confidence            34568899999999999999999999999999999995 55555543                   68999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce--------------
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY--------------  296 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------  296 (513)
                      ++++|++++.|++|+|||+ +++.+..+.+|...|.+++|+|++++|++++.|+.+++|+......              
T Consensus        68 dg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (577)
T 2ymu_A           68 DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA  146 (577)
T ss_dssp             TSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeee
Confidence            9999999999999999996 5788899999999999999999999999999999999999653211              


Q ss_pred             --------------------------eEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeE
Q 010296          297 --------------------------ISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLEC  349 (513)
Q Consensus       297 --------------------------~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~  349 (513)
                                                ......+...|.++.++|++ .+++++.++.|++|+........+..|...+.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~  226 (577)
T 2ymu_A          147 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG  226 (577)
T ss_dssp             ECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEE
T ss_pred             eecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEE
Confidence                                      11223466778888888887 466888999999999876666678888999999


Q ss_pred             EEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296          350 CCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV  428 (513)
Q Consensus       350 ~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  428 (513)
                      ++|+|++. +++++.|+.|++|+. +++.+..+.                                     .|...|+++
T Consensus       227 ~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~-------------------------------------~~~~~v~~v  268 (577)
T 2ymu_A          227 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------------------------------------GHSSSVNGV  268 (577)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECT-TSCEEEEEC-------------------------------------CCSSCEEEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEe-------------------------------------cCCCCEEEE
Confidence            99999985 789999999999995 445555543                                     334459999


Q ss_pred             EEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          429 TVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       429 ~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      +|+|++++|++++.|+.|++|+....  .+..+.  .|...|.+++|+|++++|+++ +.|+.|++|+....
T Consensus       269 ~~~~d~~~l~~~~~d~~i~~w~~~~~--~~~~~~--~h~~~v~~~~~~~~~~~l~t~-~~d~~i~~w~~~~~  335 (577)
T 2ymu_A          269 AFRPDGQTIASASDDKTVKLWNRNGQ--LLQTLT--GHSSSVWGVAFSPDGQTIASA-SDDKTVKLWNRNGQ  335 (577)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTSC--EEEEEC--CCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSC
T ss_pred             EEcCCCCEEEEEeCCCEEEEEeCCCc--EEEEEe--cCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCC
Confidence            99999999999999999999997543  344443  378899999999999999999 89999999997543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-40  Score=318.55  Aligned_cols=295  Identities=14%  Similarity=0.218  Sum_probs=244.0

Q ss_pred             hhccCCCeEEEEECCCCC-eEEEEeCCceEEEEeC----CCCcc------ccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296          155 LLKHRQSVTAVALSEDDS-KGFSASKDGSILHWDV----SSGKG------VKYLWPSEEVLKSHGAKDPQGRATKQSKHI  223 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (513)
                      ...|.+.|++++|+|+++ +|++|+.||.|++|++    .++..      ...+..         .........+|...|
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~v  111 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH---------PFALSASSGKTTNQV  111 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC---------CCCCC------CBCE
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc---------cccccccccCCCCce
Confidence            345679999999999999 9999999999999999    87773      222200         000001123478899


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH  303 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  303 (513)
                      ++++|+|++++|++|+.+|.|++|+ .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+
T Consensus       112 ~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  190 (425)
T 1r5m_A          112 TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK  190 (425)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence            9999999999999999999999999 678888899999999999999999999999999999999999999998888877


Q ss_pred             cCC---------------eEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCC
Q 010296          304 QSE---------------VLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGS  366 (513)
Q Consensus       304 ~~~---------------v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~  366 (513)
                      ...               +.++.|++++.+++++.++.|++|++.+.... .+..|...+.+++|+|++. |++++.||.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  270 (425)
T 1r5m_A          191 ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT  270 (425)
T ss_dssp             ---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             ccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE
Confidence            776               99999999999999999999999999987665 5667889999999999985 789999999


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV  446 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v  446 (513)
                      |++||+.+++++..+..                                     |...|.+++|+|++ +|++++.||.|
T Consensus       271 i~i~d~~~~~~~~~~~~-------------------------------------~~~~i~~~~~~~~~-~l~~~~~d~~i  312 (425)
T 1r5m_A          271 LRIWHGGNGNSQNCFYG-------------------------------------HSQSIVSASWVGDD-KVISCSMDGSV  312 (425)
T ss_dssp             EEEECSSSBSCSEEECC-------------------------------------CSSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             EEEEECCCCccceEecC-------------------------------------CCccEEEEEECCCC-EEEEEeCCCcE
Confidence            99999999888777642                                     23349999999999 99999999999


Q ss_pred             EEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ++||+.++ ..+..+.  .|...|.+++|+|++++|+++ +.||.|++|++....
T Consensus       313 ~i~d~~~~-~~~~~~~--~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          313 RLWSLKQN-TLLALSI--VDGVPIFAGRISQDGQKYAVA-FMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEEETTTT-EEEEEEE--CTTCCEEEEEECTTSSEEEEE-ETTSCEEEEECHHHH
T ss_pred             EEEECCCC-cEeEecc--cCCccEEEEEEcCCCCEEEEE-ECCCeEEEEECCCCc
Confidence            99999887 3343333  367899999999999999999 899999999986543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.3e-40  Score=322.37  Aligned_cols=308  Identities=13%  Similarity=0.118  Sum_probs=229.9

Q ss_pred             hhhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          152 FRVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      .....+|...|+||+|+| ++++||+|+.||+|+|||+.++.....+                 ...+|...|++|+|+|
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p  174 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNP  174 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECS
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeC
Confidence            345567999999999999 5679999999999999999887654433                 3468999999999998


Q ss_pred             -CCCEEEEEeCCCcEEEEeCCCcceeeecc--CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296          231 -DGRYLASGGLDRHIHLWDTRIQEHIQAFP--GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV  307 (513)
Q Consensus       231 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  307 (513)
                       ++.+|++|+.||+|++||+.++.......  .+...+.+++|+|++.+|++|+.||.|++||++. +.+..+.+|...|
T Consensus       175 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v  253 (435)
T 4e54_B          175 LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKV  253 (435)
T ss_dssp             SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCE
T ss_pred             CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceE
Confidence             68999999999999999998765443333  2445678999999999999999999999999964 5677788999999


Q ss_pred             EEEEeeCCC--eEEEEeCCCcEEEEecCCCeee----EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEE
Q 010296          308 LTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL----VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       308 ~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~  380 (513)
                      .+++|+|++  .+++++.|+.|++||++.....    ....|...|.+++|+|++. |++++.||.|+|||+.++.....
T Consensus       254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred             EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence            999999976  4558899999999999875432    3456888999999999985 88999999999999999887776


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCcEEEEEeCCCCccee
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGSVRLWAIESETKDIQ  459 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~~~  459 (513)
                      +...........      ..+...              ......+..+.+++++.++++++ .++.|++||+.++ ..+.
T Consensus       334 ~~~~~~~~~~~~------~~~~~~--------------~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g-~~~~  392 (435)
T 4e54_B          334 LIPHPHRHFQHL------TPIKAA--------------WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG-KMMC  392 (435)
T ss_dssp             ECCCCCCCCSSS------CCCBCE--------------ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC-CEEE
T ss_pred             Eecccccccccc------eeEEEE--------------EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC-cEEE
Confidence            643221100000      000000              00011134445555555544444 3468999999988 3333


Q ss_pred             eeeecCcccEEEEE-EeecCCCEEEEEecCCCcccccccCCCc
Q 010296          460 PLYNLPLVGFVNSL-AFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       460 ~~~~~~~~~~v~~v-~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      .+. .+|...|.++ +|+|+|.+|++| + |+.|+||+...+.
T Consensus       393 ~l~-~~~~~~v~s~~~fspdg~~lasg-~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          393 QLY-DPESSGISSLNEFNPMGDTLASA-M-GYHILIWSQQEAR  432 (435)
T ss_dssp             EEC-CSSCCCCCCEEEECTTSSCEEEE-C-SSEEEECCCC---
T ss_pred             EEe-CCCCCcEEEEEEECCCCCEEEEE-c-CCcEEEEECCcCe
Confidence            332 2467778887 699999999876 4 7799999987764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-40  Score=321.25  Aligned_cols=287  Identities=14%  Similarity=0.204  Sum_probs=241.5

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC----ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG----KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-  231 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-  231 (513)
                      .|...|++++|+|++.+|++|+.||.|++|++.+.    ..+.                   .+.+|...|++++|+|+ 
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~  125 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMA-------------------RFSNHSSSVKTVKFNAKQ  125 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEE-------------------ECCCSSSCCCEEEECSSS
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchh-------------------hccCCccceEEEEEcCCC
Confidence            68999999999999999999999999999999872    2333                   24678999999999998 


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcc------eee---eccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296          232 GRYLASGGLDRHIHLWDTRIQE------HIQ---AFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      +.+|++++.|+.|++||+.+++      ...   .+..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.
T Consensus       126 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  205 (416)
T 2pm9_A          126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS  205 (416)
T ss_dssp             TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe
Confidence            8999999999999999999876      332   34679999999999999 7889999999999999999999988887


Q ss_pred             cc------cCCeEEEEeeCCC--eEEEEeCCC---cEEEEecCCC-eee-EEe-cCCCCeeEEEeec-CCe-EEEEeCCC
Q 010296          302 GH------QSEVLTIDCLRKE--RVLTVGRDR---SMQLWKVPEE-SRL-VFR-APASSLECCCFIS-NDE-FLSGSDDG  365 (513)
Q Consensus       302 ~~------~~~v~~~~~~~~~--~~~~~~~d~---~i~iwd~~~~-~~~-~~~-~~~~~v~~~~~~~-~~~-~~~~~~dg  365 (513)
                      .+      ...|.+++|+|++  .+++++.++   .|++||+++. ... .+. .|...+.+++|+| ++. |++++.||
T Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg  285 (416)
T 2pm9_A          206 YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN  285 (416)
T ss_dssp             CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred             ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC
Confidence            66      7889999999986  566888888   9999999885 333 445 6889999999999 664 88999999


Q ss_pred             CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCC
Q 010296          366 SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNG  444 (513)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg  444 (513)
                      .|++||+.+++++..+..+                                     ...|++++|+|++ .+|++++.||
T Consensus       286 ~v~~wd~~~~~~~~~~~~~-------------------------------------~~~v~~~~~s~~~~~~l~s~~~d~  328 (416)
T 2pm9_A          286 TVLLWNPESAEQLSQFPAR-------------------------------------GNWCFKTKFAPEAPDLFACASFDN  328 (416)
T ss_dssp             EEEEECSSSCCEEEEEECS-------------------------------------SSCCCCEEECTTCTTEEEECCSSS
T ss_pred             CEEEeeCCCCccceeecCC-------------------------------------CCceEEEEECCCCCCEEEEEecCC
Confidence            9999999999988887532                                     3349999999999 8999999999


Q ss_pred             cEEEEEeCCCCcceeeee--------------e------------------cCcccEEEEEEeecCCCEEEEEecCCCcc
Q 010296          445 SVRLWAIESETKDIQPLY--------------N------------------LPLVGFVNSLAFAKSGQFLIAGVGQEPRL  492 (513)
Q Consensus       445 ~v~vwd~~~~~~~~~~~~--------------~------------------~~~~~~v~~v~~sp~~~~l~~~~~~dg~v  492 (513)
                      .|+||++.+.........              .                  ..+..++++++|+|+|++|+++ +.|+.|
T Consensus       329 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~-~~d~~v  407 (416)
T 2pm9_A          329 KIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQIT-PDGKGV  407 (416)
T ss_dssp             EEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBC-TTSSCB
T ss_pred             cEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEe-CCCCeE
Confidence            999999987632221100              0                  0045677899999999999999 899999


Q ss_pred             cccccCCC
Q 010296          493 GRWGHLPA  500 (513)
Q Consensus       493 ~~W~~~~~  500 (513)
                      +||++.++
T Consensus       408 ~~w~~~~~  415 (416)
T 2pm9_A          408 SITNPKIS  415 (416)
T ss_dssp             CCBCCCCC
T ss_pred             EEEEeccC
Confidence            99998764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=304.16  Aligned_cols=245  Identities=14%  Similarity=0.169  Sum_probs=207.8

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      ..|...|++++|+|++ .|++|+.||+|+|||+.+++.+..+               .....+|...|++|+|+|++++|
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~---------------~~~~~~H~~~V~~v~~spdg~~l  142 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVS---------------KFCKYEHDDIVSTVSVLSSGTQA  142 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEE---------------EEEEECCSSCEEEEEECTTSSEE
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEe---------------eccccCCCCCEEEEEECCCCCEE
Confidence            3467889999999985 6889999999999999988765432               00234799999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCceeEEee--cccCCeEEEEe
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAYISTLF--GHQSEVLTIDC  312 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~  312 (513)
                      ++|+.|++|++||+.+++++..+.+|...|++++|+|++. +|++++.|++|++||+++++.+..+.  .+...+.+++|
T Consensus       143 ~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  222 (344)
T 4gqb_B          143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAW  222 (344)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeee
Confidence            9999999999999999999999999999999999999885 67899999999999999998887764  35567899999


Q ss_pred             eCC-Ce-EEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCC-e-EEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296          313 LRK-ER-VLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISND-E-FLSGSDDGSIELWSLLRKKPVYIVKNAHPL  387 (513)
Q Consensus       313 ~~~-~~-~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (513)
                      +|+ +. +++++.|+.|++||+++++.+ .+..|...|.+++|+|++ . |++|+.|++|+|||+.+++.+. +      
T Consensus       223 ~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~------  295 (344)
T 4gqb_B          223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S------  295 (344)
T ss_dssp             CSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E------
T ss_pred             cCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E------
Confidence            985 44 568899999999999987765 678899999999999987 3 7799999999999999887543 2      


Q ss_pred             ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EEEEecCCCcEEEEEeCCC
Q 010296          388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~v~vwd~~~~  454 (513)
                                                     ..|...|++++|+|++. +|++|+.||+|++|++.+.
T Consensus       296 -------------------------------~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          296 -------------------------------QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             -------------------------------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             -------------------------------cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence                                           34445599999999986 6779999999999999875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.4e-39  Score=302.10  Aligned_cols=248  Identities=20%  Similarity=0.362  Sum_probs=219.6

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-  294 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-  294 (513)
                      +.+|...|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++|++.+. 
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~  130 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999999999875 


Q ss_pred             ---ceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEE
Q 010296          295 ---AYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIEL  369 (513)
Q Consensus       295 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~i  369 (513)
                         .....+.+|...|.++.|++++.+++++.|+.|++||+.++... .+..|...|.+++|+|++. +++|+.|+.|++
T Consensus       131 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~  210 (340)
T 1got_B          131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL  210 (340)
T ss_dssp             BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence               34566788999999999999999999999999999999988766 5677889999999999986 779999999999


Q ss_pred             EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296          370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW  449 (513)
Q Consensus       370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw  449 (513)
                      ||+.++.++..+..                                     |...|++++|+|++++|++|+.||+|+||
T Consensus       211 wd~~~~~~~~~~~~-------------------------------------h~~~v~~v~~~p~~~~l~s~s~d~~v~iw  253 (340)
T 1got_B          211 WDVREGMCRQTFTG-------------------------------------HESDINAICFFPNGNAFATGSDDATCRLF  253 (340)
T ss_dssp             EETTTCSEEEEECC-------------------------------------CSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EECCCCeeEEEEcC-------------------------------------CcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            99999988887743                                     33449999999999999999999999999


Q ss_pred             EeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          450 AIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       450 d~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      |+.+. ..+..+....+...|++++|+|+|++|+++ +.||.|++|+......
T Consensus       254 d~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~d~~i~vwd~~~~~~  304 (340)
T 1got_B          254 DLRAD-QELMTYSHDNIICGITSVSFSKSGRLLLAG-YDDFNCNVWDALKADR  304 (340)
T ss_dssp             ETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCE
T ss_pred             ECCCC-cEEEEEccCCcccceEEEEECCCCCEEEEE-CCCCeEEEEEcccCcE
Confidence            99887 333333322234579999999999999999 8999999999876654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-39  Score=314.54  Aligned_cols=280  Identities=14%  Similarity=0.227  Sum_probs=241.6

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      |.+.|++++|+|++++|++|+.||.|++|+ .++..+..+                   ..|...|++++|+|++++|++
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~-------------------~~~~~~v~~~~~~~~~~~l~~  166 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL-------------------NFHRAPIVSVKWNKDGTHIIS  166 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE-------------------CCCCSCEEEEEECTTSSEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec-------------------cCCCccEEEEEECCCCCEEEE
Confidence            788999999999999999999999999999 445544433                   578899999999999999999


Q ss_pred             EeCCCcEEEEeCCCcceeeeccCcCCC---------------eEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          238 GGLDRHIHLWDTRIQEHIQAFPGHRGP---------------VSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      ++.++.|++||+.+++.+..+..+...               +.+++|+|++ .+++++.+|.|++||+.+++.+..+..
T Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~  245 (425)
T 1r5m_A          167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIG  245 (425)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECC
T ss_pred             EecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeecc
Confidence            999999999999999999988887776               9999999974 688999999999999999999999999


Q ss_pred             ccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEE
Q 010296          303 HQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       303 ~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  380 (513)
                      |...|.+++|+|++ .+++++.++.|++|++.+.... .+..+...+.+++|+|++.+++++.||.|++||+.+++++..
T Consensus       246 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  325 (425)
T 1r5m_A          246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLAL  325 (425)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEe
Confidence            99999999999987 5668889999999999887655 556688999999999999888999999999999999988887


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCc----
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETK----  456 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~----  456 (513)
                      +...                                     ...|.+++|+|++++|++++.||.|++|++.+...    
T Consensus       326 ~~~~-------------------------------------~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~  368 (425)
T 1r5m_A          326 SIVD-------------------------------------GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRS  368 (425)
T ss_dssp             EECT-------------------------------------TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC----
T ss_pred             cccC-------------------------------------CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceee
Confidence            7532                                     23399999999999999999999999999987620    


Q ss_pred             ---------------ceeeeeecCccc--EEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          457 ---------------DIQPLYNLPLVG--FVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       457 ---------------~~~~~~~~~~~~--~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                                     .+..+..  |..  .|++++|+|++++|+++ +.||.|++|++.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~  424 (425)
T 1r5m_A          369 LYGNRDGILNPLPIPLYASYQS--SQDNDYIFDLSWNCAGNKISVA-YSLQEGSVVAIP  424 (425)
T ss_dssp             ----------CEECCEEEEECC--TTCCCCEEEEEECTTSSEEEEE-ESSSCCEEEECC
T ss_pred             eecccccccCcccchhhhhhcC--cccCCceEEEEccCCCceEEEE-ecCceEEEEeec
Confidence                           2233322  433  89999999999999999 899999999874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.7e-39  Score=307.60  Aligned_cols=288  Identities=14%  Similarity=0.131  Sum_probs=239.1

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCc--cccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK--GVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      +..|.++|++++|+|++++|++|+.|+.|++|++.+++  .+..+                   .+|...|++++|+|++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-------------------~~h~~~v~~~~~~~~~   64 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-------------------KEHNGQVTGVDWAPDS   64 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-------------------ECCSSCEEEEEEETTT
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-------------------cCCCCcccEEEEeCCC
Confidence            44699999999999999999999999999999998876  44433                   5789999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce---e-EEeecccCC
Q 010296          233 RYLASGGLDRHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY---I-STLFGHQSE  306 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~-~~~~~~~~~  306 (513)
                      ++|++++.||.|++||+.+++...  .+..|...|.+++|+|++++|++++.|+.|++||+..+..   . .....|...
T Consensus        65 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~  144 (372)
T 1k8k_C           65 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST  144 (372)
T ss_dssp             TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred             CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC
Confidence            999999999999999998886543  3466999999999999999999999999999999988763   2 333568899


Q ss_pred             eEEEEeeCCC-eEEEEeCCCcEEEEecC------------------CCeee-EEecCCCCeeEEEeecCCe-EEEEeCCC
Q 010296          307 VLTIDCLRKE-RVLTVGRDRSMQLWKVP------------------EESRL-VFRAPASSLECCCFISNDE-FLSGSDDG  365 (513)
Q Consensus       307 v~~~~~~~~~-~~~~~~~d~~i~iwd~~------------------~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg  365 (513)
                      |.+++|+|++ .+++++.++.|++||+.                  .+... .+..|...+.+++|+|++. |++++.||
T Consensus       145 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  224 (372)
T 1k8k_C          145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS  224 (372)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred             eeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC
Confidence            9999999987 56688899999999964                  34443 4557888999999999984 88999999


Q ss_pred             CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc
Q 010296          366 SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS  445 (513)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~  445 (513)
                      .|++||+.+++++..+...                                     ...|.+++|+|++.+|++| .||.
T Consensus       225 ~i~i~d~~~~~~~~~~~~~-------------------------------------~~~v~~~~~~~~~~~l~~~-~d~~  266 (372)
T 1k8k_C          225 TVCLADADKKMAVATLASE-------------------------------------TLPLLAVTFITESSLVAAG-HDCF  266 (372)
T ss_dssp             EEEEEEGGGTTEEEEEECS-------------------------------------SCCEEEEEEEETTEEEEEE-TTSS
T ss_pred             EEEEEECCCCceeEEEccC-------------------------------------CCCeEEEEEecCCCEEEEE-eCCe
Confidence            9999999999988887533                                     2339999999999988888 8999


Q ss_pred             EEEEEeCC--CCc-c-----------------e----------e--------eeeecCcccEEEEEEee-cCC---CEEE
Q 010296          446 VRLWAIES--ETK-D-----------------I----------Q--------PLYNLPLVGFVNSLAFA-KSG---QFLI  483 (513)
Q Consensus       446 v~vwd~~~--~~~-~-----------------~----------~--------~~~~~~~~~~v~~v~~s-p~~---~~l~  483 (513)
                      |++|++..  +.- .                 +          .        ......|..+|++++|+ ++|   .+|+
T Consensus       267 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~  346 (372)
T 1k8k_C          267 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC  346 (372)
T ss_dssp             CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred             EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEE
Confidence            99999987  310 0                 0          0        00112588899999976 666   8999


Q ss_pred             EEecCCCcccccccCCC
Q 010296          484 AGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       484 ~~~~~dg~v~~W~~~~~  500 (513)
                      ++ +.||.|++|++...
T Consensus       347 s~-~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          347 TT-GMDGGMSIWDVRSL  362 (372)
T ss_dssp             EE-ETTSEEEEEEHHHH
T ss_pred             Ee-cCCCceEEEEecCh
Confidence            98 99999999997653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.1e-39  Score=314.65  Aligned_cols=282  Identities=18%  Similarity=0.256  Sum_probs=237.4

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      ..+++++|+|++++|++++.||.|++|++.++.....+                   ..| ..+....|+|++++|++|+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-------------------~~~-~~~~~~~~~~~~~~l~~~~  116 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-------------------KRA-DYTAVDTAKLQMRRFILGT  116 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-------------------CSC-CEEEEEEECSSSCEEEEEE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-------------------ecC-CceEEEEEecCCCEEEEEE
Confidence            44668999999999999999999999999887765433                   233 4455667899999999999


Q ss_pred             CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-eE
Q 010296          240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RV  318 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~  318 (513)
                      .||.|++||+.+++.+..+.+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+
T Consensus       117 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  196 (420)
T 3vl1_A          117 TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV  196 (420)
T ss_dssp             TTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987 56


Q ss_pred             EEEeCCCcEEEEecCCCeeeEEec----CCC---------------------CeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296          319 LTVGRDRSMQLWKVPEESRLVFRA----PAS---------------------SLECCCFISNDE-FLSGSDDGSIELWSL  372 (513)
Q Consensus       319 ~~~~~d~~i~iwd~~~~~~~~~~~----~~~---------------------~v~~~~~~~~~~-~~~~~~dg~i~iwd~  372 (513)
                      ++++.|+.|++||+.++.......    +..                     .+.+++|+|++. +++++.||.|++||+
T Consensus       197 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  276 (420)
T 3vl1_A          197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV  276 (420)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEET
T ss_pred             EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEEC
Confidence            689999999999999887663322    333                     344455577885 779999999999999


Q ss_pred             CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EEEEecCCCcEEEEEe
Q 010296          373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LAASGAGNGSVRLWAI  451 (513)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~v~vwd~  451 (513)
                      .+++.+..+...                                    |...|++++|+|++. +|++|+.||.|++||+
T Consensus       277 ~~~~~~~~~~~~------------------------------------~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~  320 (420)
T 3vl1_A          277 FSKEQTIQLPSK------------------------------------FTCSCNSLTVDGNNANYIYAGYENGMLAQWDL  320 (420)
T ss_dssp             TTCCEEEEECCT------------------------------------TSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             CCCceeEEcccc------------------------------------cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence            999888777532                                    334499999999998 9999999999999999


Q ss_pred             CCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          452 ESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      .++..++..+.. .+...|+++.| |++++|+++ +.||.|++|++...
T Consensus       321 ~~~~~~~~~~~~-~~~~~v~~~~~-~~~~~l~s~-~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          321 RSPECPVGEFLI-NEGTPINNVYF-AAGALFVSS-GFDTSIKLDIISDP  366 (420)
T ss_dssp             TCTTSCSEEEEE-STTSCEEEEEE-ETTEEEEEE-TTTEEEEEEEECCT
T ss_pred             CCCcCchhhhhc-cCCCCceEEEe-CCCCEEEEe-cCCccEEEEeccCC
Confidence            987544444443 25678888855 578888888 99999999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6e-39  Score=309.17  Aligned_cols=287  Identities=18%  Similarity=0.272  Sum_probs=240.2

Q ss_pred             hhccCCCe--EEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          155 LLKHRQSV--TAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       155 ~~~h~~~V--~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      ..+|...+  .+++|++  ..+++++.|+.|++|++.++.....+                  ...|...|++++|+|++
T Consensus        87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~  146 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDG  146 (401)
T ss_dssp             CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTS
T ss_pred             CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCC
Confidence            34676654  4455654  66889999999999999998876544                  12478899999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC-CCceeEEeecccCCeEEEE
Q 010296          233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE-DRAYISTLFGHQSEVLTID  311 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~  311 (513)
                      .+|++|+.+|.|++||+.+++.+..+.+|...|.+++|+  +.+|++++.||.|++||++ ....+..+.+|...|.+++
T Consensus       147 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  224 (401)
T 4aez_A          147 SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA  224 (401)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE
Confidence            999999999999999999999999999999999999994  5789999999999999999 4667788889999999999


Q ss_pred             eeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe--EEEEe--CCCCEEEEecCCCCeeEEeecCC
Q 010296          312 CLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE--FLSGS--DDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       312 ~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~--~~~~~--~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      |+|++ .+++++.|+.|++||+.+.... .+..|...+.+++|+|++.  +++++  .|+.|++||+.+++++..+....
T Consensus       225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~  304 (401)
T 4aez_A          225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS  304 (401)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS
T ss_pred             EcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            99987 5668899999999999987766 5667889999999999763  45554  79999999999999888875322


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE--ecCCCcEEEEEeCCCCcceeeeee
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS--GAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                                                            .|++++|+|++++|++  |+.||.|+||++.++ ........
T Consensus       305 --------------------------------------~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-~~~~~~~~  345 (401)
T 4aez_A          305 --------------------------------------QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQVDI  345 (401)
T ss_dssp             --------------------------------------CEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-EEEEEEEE
T ss_pred             --------------------------------------cEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-cceeEEEe
Confidence                                                  2999999999999999  558999999999886 23333333


Q ss_pred             cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                      ..|.+.|.+++|+|++++|+++ +.||.|++|++..+...
T Consensus       346 ~~h~~~v~~~~~s~dg~~l~s~-~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          346 PAHDTRVLYSALSPDGRILSTA-ASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             ECCSSCCCEEEECTTSSEEEEE-CTTSEEEEEECCC----
T ss_pred             cCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEECCCCccc
Confidence            3478899999999999999999 89999999999876543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.1e-39  Score=311.99  Aligned_cols=299  Identities=14%  Similarity=0.176  Sum_probs=243.7

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+.........+..| ..+....|+|++++|++|+.||.|++||+.++.....+                   .+|...
T Consensus        82 i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------~~h~~~  141 (420)
T 3vl1_A           82 LFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-------------------QAHVSE  141 (420)
T ss_dssp             EEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-------------------TSSSSC
T ss_pred             EEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-------------------ccccCc
Confidence            4566666666677666 55666688999999999999999999999988766533                   579999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      |++++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..
T Consensus       142 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  221 (420)
T 3vl1_A          142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR  221 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred             cEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888764


Q ss_pred             ---ccCCeE---------------------EEEeeCCCe-EEEEeCCCcEEEEecCCCeeeEE--ecCCCCeeEEEeecC
Q 010296          303 ---HQSEVL---------------------TIDCLRKER-VLTVGRDRSMQLWKVPEESRLVF--RAPASSLECCCFISN  355 (513)
Q Consensus       303 ---~~~~v~---------------------~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~  355 (513)
                         +...+.                     +++|+|++. +++++.++.|++||+++......  ..+...+.+++|+|+
T Consensus       222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  301 (420)
T 3vl1_A          222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGN  301 (420)
T ss_dssp             TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSS
T ss_pred             CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCC
Confidence               333444                     445567774 55888999999999998876533  346788999999999


Q ss_pred             Ce--EEEEeCCCCEEEEecCCCCe-eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec
Q 010296          356 DE--FLSGSDDGSIELWSLLRKKP-VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG  432 (513)
Q Consensus       356 ~~--~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  432 (513)
                      +.  |++++.||.|++||+.+++. +..+...+.                                    ..|+++.+ +
T Consensus       302 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~------------------------------------~~v~~~~~-~  344 (420)
T 3vl1_A          302 NANYIYAGYENGMLAQWDLRSPECPVGEFLINEG------------------------------------TPINNVYF-A  344 (420)
T ss_dssp             CTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT------------------------------------SCEEEEEE-E
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC------------------------------------CCceEEEe-C
Confidence            84  78999999999999998753 666654332                                    23888855 5


Q ss_pred             CCCEEEEecCCCcEEEEEeCCCCccee------eeeecCcccEEEEEEeecCCC---EEEEEecCCCcccccccCC
Q 010296          433 GSDLAASGAGNGSVRLWAIESETKDIQ------PLYNLPLVGFVNSLAFAKSGQ---FLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       433 ~~~~l~~g~~dg~v~vwd~~~~~~~~~------~~~~~~~~~~v~~v~~sp~~~---~l~~~~~~dg~v~~W~~~~  499 (513)
                      ++++|++++.||.|++|++.....+..      ......+.+.|.+++|+|+++   .|+++ |.+|.+.+|++..
T Consensus       345 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~-g~~g~~~~~~~~~  419 (420)
T 3vl1_A          345 AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEV-GKNNFCALYNLSN  419 (420)
T ss_dssp             TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEE-ETTTEEEEEESCC
T ss_pred             CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEE-cCCceEEEEeccC
Confidence            788999999999999999987522211      112234678899999999999   77777 7889999998753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.7e-39  Score=303.96  Aligned_cols=304  Identities=12%  Similarity=0.147  Sum_probs=250.9

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      ....+|.+.|++++|+|++.+|++++.||.|+||++.++......                .....|...|++++|+|++
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~   68 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNT   68 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESS
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCC
Confidence            345589999999999999999999999999999999877621100                0124788999999999999


Q ss_pred             C-EEEEEeCCCcEEEEeC-CCcceeeeccC--cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC---------CceeEE
Q 010296          233 R-YLASGGLDRHIHLWDT-RIQEHIQAFPG--HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED---------RAYIST  299 (513)
Q Consensus       233 ~-~l~s~~~dg~i~vwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~  299 (513)
                      + +|++|+.+|.|++|++ .+++. ..+.+  |...|.+++|+| +.+|++++.|+.|++||+++         ++++..
T Consensus        69 ~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  146 (342)
T 1yfq_A           69 DLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             SEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             CcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence            9 9999999999999999 77754 67788  999999999999 99999999999999999988         777776


Q ss_pred             eecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCC-Cee---eEEecCCCCeeEEEeec-CCe-EEEEeCCCCEEEEecC
Q 010296          300 LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPE-ESR---LVFRAPASSLECCCFIS-NDE-FLSGSDDGSIELWSLL  373 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~-~~~---~~~~~~~~~v~~~~~~~-~~~-~~~~~~dg~i~iwd~~  373 (513)
                      +. |...|.+++|++++ +++++.++.|++|++.. ...   .....+...+.+++|+| ++. +++++.+|.|++|++.
T Consensus       147 ~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          147 TK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             SS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred             Ee-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence            66 88999999999888 88999999999999987 432   24556778899999999 774 8899999999999998


Q ss_pred             CC------CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296          374 RK------KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR  447 (513)
Q Consensus       374 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~  447 (513)
                      ..      ++...+.......                            ....|...|++++|+|++++|++|+.||.|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  276 (342)
T 1yfq_A          225 DQGDDYNSSKRFAFRCHRLNL----------------------------KDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS  276 (342)
T ss_dssp             TTCCSTTCTTCEEEECCCCCT----------------------------TCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred             CCCcccccccceeeecccccc----------------------------cccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence            86      6666665432210                            0023445699999999999999999999999


Q ss_pred             EEEeCCCCcceeeeeecCc-ccEEEEEEeecCCCEEEEEecCCCc-ccccc---cCCCcccceEEEe-c
Q 010296          448 LWAIESETKDIQPLYNLPL-VGFVNSLAFAKSGQFLIAGVGQEPR-LGRWG---HLPAARNGVLVHP-I  510 (513)
Q Consensus       448 vwd~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~~dg~-v~~W~---~~~~~~~~~~~~~-l  510 (513)
                      +||+.++ ..+..+..  | ..+|++++  |++++|+++ +.||. .+.|.   ..+..++.+++++ |
T Consensus       277 vwd~~~~-~~~~~~~~--~h~~~v~~~~--~~~~~l~s~-s~Dg~~~~~~~~~~~~~~~~~~i~~~~~~  339 (342)
T 1yfq_A          277 CWNLQTR-KKIKNFAK--FNEDSVVKIA--CSDNILCLA-TSDDTFKTNAAIDQTIELNASSIYIIFDY  339 (342)
T ss_dssp             EEETTTT-EEEEECCC--CSSSEEEEEE--ECSSEEEEE-EECTHHHHCSSSCTTSCCCCCEEEEEETC
T ss_pred             EEcCccH-hHhhhhhc--ccCCCceEec--CCCCeEEEE-ecCCcccccccccccCCCCCceEEEeccc
Confidence            9999987 33333332  5 88999999  999999999 88999 88787   4556667888877 5

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-39  Score=315.86  Aligned_cols=321  Identities=12%  Similarity=0.154  Sum_probs=247.0

Q ss_pred             cCCCcccchhhh-hccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCC---CccccccCCChhhhccCCCCCCCCCCCC
Q 010296          144 QKPEATDEFRVL-LKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSS---GKGVKYLWPSEEVLKSHGAKDPQGRATK  218 (513)
Q Consensus       144 ~~~~~~~~~~~~-~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (513)
                      |. .....+..+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.+   +......                 ....
T Consensus        48 w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-----------------~~~~  109 (437)
T 3gre_A           48 GN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS-----------------LTYD  109 (437)
T ss_dssp             GG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS-----------------EEEE
T ss_pred             cc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee-----------------eecc
Confidence            44 334556666 89999999999999 999999999999999999876   3211100                 1125


Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC---CcceeeeccC------------cCCCeEEEE--EecCCCeEEEEe
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTR---IQEHIQAFPG------------HRGPVSCLT--FRQGTSELFSGS  281 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~~  281 (513)
                      |...|++++|+|++.+|++|+.||.|++||+.   +++.+..+..            +...+.++.  +++++.+|++++
T Consensus       110 h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (437)
T 3gre_A          110 CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT  189 (437)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe
Confidence            88999999999999999999999999999994   5544433322            455677776  557899999999


Q ss_pred             CCCcEEEEeCCCCceeEEeec--ccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeEEe--cCCCCeeEEEeec--
Q 010296          282 FDRTVKIWNAEDRAYISTLFG--HQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLVFR--APASSLECCCFIS--  354 (513)
Q Consensus       282 ~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~--  354 (513)
                      .|+.|++||+++++++..+..  |...|.+++|+|++. +++++.|+.|++||++.+..+...  .+...|.+++++|  
T Consensus       190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  269 (437)
T 3gre_A          190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY  269 (437)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred             CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence            999999999999999999987  889999999999875 568999999999999998876432  6677899996654  


Q ss_pred             --CCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe
Q 010296          355 --NDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC  431 (513)
Q Consensus       355 --~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  431 (513)
                        ++. +++++.||.|++||+.+++++..+........ ...+.+....+.          ...+....|...|++++|+
T Consensus       270 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~----------~~~~~~~~~~~~v~~l~~~  338 (437)
T 3gre_A          270 GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPS-MEHFLPIEKGLE----------ELNFCGIRSLNALSTISVS  338 (437)
T ss_dssp             CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCC-GGGGSCBCSSGG----------GCCCCCCCSGGGGCCEEEE
T ss_pred             CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCc-cceecccccccc----------cceecccccCCceEEEEEC
Confidence              564 78999999999999999999888875543221 112222222110          0112223477889999999


Q ss_pred             cCCCEEEEecCCCcEEEEEeCCCCcceeeeeec-----------------------------------CcccEEEEEEee
Q 010296          432 GGSDLAASGAGNGSVRLWAIESETKDIQPLYNL-----------------------------------PLVGFVNSLAFA  476 (513)
Q Consensus       432 ~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-----------------------------------~~~~~v~~v~~s  476 (513)
                       ++++|++|+.||.|++||+.++ .....+...                                   .|...|++++|+
T Consensus       339 -~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~  416 (437)
T 3gre_A          339 -NDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTC  416 (437)
T ss_dssp             -TTEEEEEEGGGTEEEEEETTCG-GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEE
T ss_pred             -CceEEEecCCCCeEEEEECCCc-ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeee
Confidence             7799999999999999999887 333333221                                   178889999999


Q ss_pred             cC--CCEEEEEecCCCcccccc
Q 010296          477 KS--GQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       477 p~--~~~l~~~~~~dg~v~~W~  496 (513)
                      ++  +.+|+++ +.||.|+||.
T Consensus       417 ~~~~~~~l~s~-~~dG~I~iw~  437 (437)
T 3gre_A          417 EVDETPLLVAC-DNSGLIGIFQ  437 (437)
T ss_dssp             ESSSSEEEEEE-ETTSCEEEEC
T ss_pred             ccCCceEEEEE-cCCceEEEeC
Confidence            98  6678887 9999999994

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-40  Score=317.11  Aligned_cols=285  Identities=11%  Similarity=0.115  Sum_probs=222.7

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC--ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG--KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      +..|.++|++++|+|++++|++|+.|+.|+||++.++  ..+.                   .+.+|...|++++|+|++
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~   67 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKS   67 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTT
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCC
Confidence            4457889999999999999999999999999999877  4443                   346899999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCcc---eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc---eeEEeec-ccC
Q 010296          233 RYLASGGLDRHIHLWDTRIQE---HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA---YISTLFG-HQS  305 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~  305 (513)
                      ++|++++.|+.|++||+.++.   ....+..|...|.+++|+|++++|++++.|+.|++||+.+++   ....+.. |..
T Consensus        68 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  147 (377)
T 3dwl_C           68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS  147 (377)
T ss_dssp             CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred             CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence            999999999999999999877   677788899999999999999999999999999999999887   4677777 999


Q ss_pred             CeEEEEeeCCC-eEEEEeCCCcEEEEecCC------------------CeeeEEecCCCCeeEEEeecCCe-EEEEeCCC
Q 010296          306 EVLTIDCLRKE-RVLTVGRDRSMQLWKVPE------------------ESRLVFRAPASSLECCCFISNDE-FLSGSDDG  365 (513)
Q Consensus       306 ~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~------------------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg  365 (513)
                      .|.+++|+|++ .+++++.|+.|++||+..                  +.......|...|.+++|+|++. |++++.||
T Consensus       148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~  227 (377)
T 3dwl_C          148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS  227 (377)
T ss_dssp             CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTT
T ss_pred             CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCC
Confidence            99999999987 566899999999999852                  22332227888999999999986 88999999


Q ss_pred             CEEEEecCCCCe----eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296          366 SIELWSLLRKKP----VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA  441 (513)
Q Consensus       366 ~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  441 (513)
                      .|++||+.+++.    +..+                                     ..|...|.+++|+|++++|++|+
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~-------------------------------------~~~~~~v~~~~~s~~~~~l~~~~  270 (377)
T 3dwl_C          228 SVTIAYPSAPEQPPRALITV-------------------------------------KLSQLPLRSLLWANESAIVAAGY  270 (377)
T ss_dssp             EEC-CEECSTTSCEEECCCE-------------------------------------ECSSSCEEEEEEEETTEEEEEES
T ss_pred             cEEEEECCCCCCcceeeEee-------------------------------------cCCCCceEEEEEcCCCCEEEEEc
Confidence            999999998876    3333                                     23445599999999999999998


Q ss_pred             CCCcEEEEEeCCCCc-cee-------------------------e---------e--------------eecCcccEEEE
Q 010296          442 GNGSVRLWAIESETK-DIQ-------------------------P---------L--------------YNLPLVGFVNS  472 (513)
Q Consensus       442 ~dg~v~vwd~~~~~~-~~~-------------------------~---------~--------------~~~~~~~~v~~  472 (513)
                      .++.+ +|+...... ...                         .         +              ....|...|++
T Consensus       271 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~  349 (377)
T 3dwl_C          271 NYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIAT  349 (377)
T ss_dssp             SSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEE
T ss_pred             CCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEE
Confidence            77655 776652210 000                         0         0              00127889999


Q ss_pred             EEeecCCC----EEEEEecCCCccccccc
Q 010296          473 LAFAKSGQ----FLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       473 v~~sp~~~----~l~~~~~~dg~v~~W~~  497 (513)
                      +++.+...    .|+++ |.||.|++|++
T Consensus       350 ~~~~~~~~~~~~~~~s~-g~Dg~i~iWdl  377 (377)
T 3dwl_C          350 LRPYAGTPGNITAFTSS-GTDGRVVLWTL  377 (377)
T ss_dssp             EEEEEEETTEEEEEEEE-ETTSEEEEECC
T ss_pred             EeccCCCCCceEEEEee-cCCCcEEEecC
Confidence            99776543    57777 99999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-38  Score=296.05  Aligned_cols=257  Identities=19%  Similarity=0.346  Sum_probs=222.3

Q ss_pred             ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ..+++.+.+|...|++++|+|++++|++|+.|++|+|||+.+++.+..+                   .+|...|.+++|
T Consensus        55 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~-------------------~~h~~~v~~~~~  115 (319)
T 3frx_A           55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF-------------------VGHKSDVMSVDI  115 (319)
T ss_dssp             EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------------------ECCSSCEEEEEE
T ss_pred             cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE-------------------ccCCCcEEEEEE
Confidence            3456788999999999999999999999999999999999998877654                   689999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecC------CCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG------TSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      +|++.+|++|+.|++|++||+. +..+..+.+|...|.++.|+|.      +.+|++++.|+.|++||+.+.+....+.+
T Consensus       116 ~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  194 (319)
T 3frx_A          116 DKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG  194 (319)
T ss_dssp             CTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             cCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC
Confidence            9999999999999999999986 5677888899999999999985      44899999999999999999999999999


Q ss_pred             ccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEe
Q 010296          303 HQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       303 ~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                      |...|.+++|+|++. +++++.|+.|++||+.+...+....+...+.+++|+|++.+++++.++.+++|++.....+..+
T Consensus       195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~  274 (319)
T 3frx_A          195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL  274 (319)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeecc
Confidence            999999999999885 5689999999999999988876666678899999999998666666777999999887766665


Q ss_pred             ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .......                             ...+...+.+++|+|+|++|++|+.||.|+||++.+.
T Consensus       275 ~~~~~~~-----------------------------~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          275 RPEFAGY-----------------------------SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCCCTTC-----------------------------CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             Ccccccc-----------------------------ccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            4321100                             0233445999999999999999999999999998754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-39  Score=314.26  Aligned_cols=288  Identities=15%  Similarity=0.249  Sum_probs=239.9

Q ss_pred             cCCCeEEEEECCCCC-eEEEE----------eCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296          158 HRQSVTAVALSEDDS-KGFSA----------SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL  226 (513)
Q Consensus       158 h~~~V~~~~~s~~~~-~l~t~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (513)
                      +...|.+++|+|+++ +|++|          +.|+.|+||++.++.....+                 ....|...|+++
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~v~~~   73 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-----------------ASLQVDSKFNDL   73 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-----------------CCCCCSSCEEEE
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-----------------EEEecCCceEEE
Confidence            445799999999987 89999          88999999999887633211                 123678899999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCC----cceeeeccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeCCCCc------
Q 010296          227 AVSSDGRYLASGGLDRHIHLWDTRI----QEHIQAFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNAEDRA------  295 (513)
Q Consensus       227 ~~s~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------  295 (513)
                      +|+|++.+|++|+.||.|++|++.+    .+.+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+.+++      
T Consensus        74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  153 (416)
T 2pm9_A           74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY  153 (416)
T ss_dssp             EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred             EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence            9999999999999999999999987    4578889999999999999998 8999999999999999999876      


Q ss_pred             eeE---EeecccCCeEEEEeeCC-C-eEEEEeCCCcEEEEecCCCeeeE-EecC------CCCeeEEEeecCC--eEEEE
Q 010296          296 YIS---TLFGHQSEVLTIDCLRK-E-RVLTVGRDRSMQLWKVPEESRLV-FRAP------ASSLECCCFISND--EFLSG  361 (513)
Q Consensus       296 ~~~---~~~~~~~~v~~~~~~~~-~-~~~~~~~d~~i~iwd~~~~~~~~-~~~~------~~~v~~~~~~~~~--~~~~~  361 (513)
                      ...   .+..|...|.+++|+|+ + .+++++.++.|++||+.+..... +..+      ...+.+++|+|++  .++++
T Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  233 (416)
T 2pm9_A          154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA  233 (416)
T ss_dssp             CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred             cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence            332   23678899999999997 4 56688999999999999887764 3333      6789999999987  47899


Q ss_pred             eCCC---CEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCE
Q 010296          362 SDDG---SIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDL  436 (513)
Q Consensus       362 ~~dg---~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~  436 (513)
                      +.++   .|++||++++ .++..+.                                    ..|...|++++|+| ++++
T Consensus       234 ~~d~~~~~i~~~d~~~~~~~~~~~~------------------------------------~~~~~~v~~~~~s~~~~~~  277 (416)
T 2pm9_A          234 TGSDNDPSILIWDLRNANTPLQTLN------------------------------------QGHQKGILSLDWCHQDEHL  277 (416)
T ss_dssp             ECCSSSCCCCEEETTSTTSCSBCCC------------------------------------SCCSSCEEEEEECSSCSSC
T ss_pred             ECCCCCceEEEEeCCCCCCCcEEee------------------------------------cCccCceeEEEeCCCCCCe
Confidence            9998   9999999886 3433332                                    13445599999999 9999


Q ss_pred             EEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCC-CEEEEEecCCCcccccccCCCcc
Q 010296          437 AASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSG-QFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       437 l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      |++++.||.|++||+.++ ..+..+..  |...|++++|+|++ .+|+++ +.|+.|++|++.....
T Consensus       278 l~s~~~dg~v~~wd~~~~-~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~-~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          278 LLSSGRDNTVLLWNPESA-EQLSQFPA--RGNWCFKTKFAPEAPDLFACA-SFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             EEEEESSSEEEEECSSSC-CEEEEEEC--SSSCCCCEEECTTCTTEEEEC-CSSSEEEEEESCCCCC
T ss_pred             EEEEeCCCCEEEeeCCCC-ccceeecC--CCCceEEEEECCCCCCEEEEE-ecCCcEEEEEccCCCC
Confidence            999999999999999987 44444443  78899999999999 788877 9999999999876543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.5e-38  Score=296.58  Aligned_cols=258  Identities=17%  Similarity=0.275  Sum_probs=222.6

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+.........+..|...|.+++|+|++.+|++|+.|+.+++|++.........             .....+..|...
T Consensus        90 vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~-------------~~~~~~~~h~~~  156 (354)
T 2pbi_B           90 VWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA-------------AKKKSVAMHTNY  156 (354)
T ss_dssp             EEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG-------------GGCEEEEECSSC
T ss_pred             EEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc-------------ccceeeeccCCc
Confidence            5666666777788889999999999999999999999999999998754321100             011123578999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec--CCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ--GTSELFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      |.+++|+|++..|++++.|++|++||+.+++++..+.+|...|.+++|+|  ++++|++|+.||.|++||+++++++..+
T Consensus       157 v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~  236 (354)
T 2pbi_B          157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF  236 (354)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            99999999999999999999999999999999999999999999999987  4689999999999999999999999999


Q ss_pred             ecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecC---CCCeeEEEeecCCe-EEEEeCCCCEEEEecCCC
Q 010296          301 FGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAP---ASSLECCCFISNDE-FLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~  375 (513)
                      .+|...|.+++|+|++ .+++++.|++|++||++..........   ...+.+++|+|++. +++|+.|+.|++||+.++
T Consensus       237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  316 (354)
T 2pbi_B          237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG  316 (354)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence            9999999999999987 566999999999999998876643332   34688999999986 779999999999999999


Q ss_pred             CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      +.+..+.                                     .|...|++++|+|+|++|++|+.||+|+||+
T Consensus       317 ~~~~~l~-------------------------------------~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          317 SRVSILF-------------------------------------GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SEEEEEC-------------------------------------CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ceEEEEE-------------------------------------CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            8887763                                     3445599999999999999999999999995

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8.3e-38  Score=303.03  Aligned_cols=277  Identities=20%  Similarity=0.322  Sum_probs=236.4

Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL  240 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  240 (513)
                      .++.|+||++ ++||+|. |++|+|||+.+++....+                 ...+|...|++|+|+|+|++|++|+.
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs~  167 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGTS  167 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEEC
Confidence            4678999986 5777765 899999999999877654                 34578889999999999999999999


Q ss_pred             CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-ceeEEeecccCCeEEEEeeCCC-eE
Q 010296          241 DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-AYISTLFGHQSEVLTIDCLRKE-RV  318 (513)
Q Consensus       241 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~  318 (513)
                      ||.|+|||+.+++.+..+.+|...+.+++++  +.+|++|+.|+.+++|+.... ..+..+.+|...+..+.++|++ .+
T Consensus       168 Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l  245 (420)
T 4gga_A          168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL  245 (420)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCee
Confidence            9999999999999999999999999998875  578999999999999999874 4567788999999999999987 45


Q ss_pred             EEEeCCCcEEEEecCCCee-----eEEecCCCCeeEEEeecCCe--EEE--EeCCCCEEEEecCCCCeeEEeecCCCccc
Q 010296          319 LTVGRDRSMQLWKVPEESR-----LVFRAPASSLECCCFISNDE--FLS--GSDDGSIELWSLLRKKPVYIVKNAHPLLD  389 (513)
Q Consensus       319 ~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~--~~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  389 (513)
                      ++++.|+.+++|+...+..     .....+...|.+++|+|.+.  +++  |+.|++|++||+.+++++..+.....   
T Consensus       246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~---  322 (420)
T 4gga_A          246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---  322 (420)
T ss_dssp             EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC---
T ss_pred             eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc---
Confidence            5899999999999976542     35667888999999999763  443  45799999999999998888764332   


Q ss_pred             CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec--CCCcEEEEEeCCCCcceeeeeecCcc
Q 010296          390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA--GNGSVRLWAIESETKDIQPLYNLPLV  467 (513)
Q Consensus       390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~--~dg~v~vwd~~~~~~~~~~~~~~~~~  467 (513)
                                                         +.++.|+|+++.|++++  .||.|+|||+.++ ..+..+..  |.
T Consensus       323 -----------------------------------v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~g--H~  364 (420)
T 4gga_A          323 -----------------------------------VCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKG--HT  364 (420)
T ss_dssp             -----------------------------------EEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECC--CS
T ss_pred             -----------------------------------eeeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEcC--CC
Confidence                                               89999999999888765  7899999999987 44555544  88


Q ss_pred             cEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          468 GFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       468 ~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      +.|++|+|+|+|++|+++ +.|++|+||++...
T Consensus       365 ~~V~~l~~spdg~~l~S~-s~D~tvriWdv~~~  396 (420)
T 4gga_A          365 SRVLSLTMSPDGATVASA-AADETLRLWRCFEL  396 (420)
T ss_dssp             SCEEEEEECTTSSCEEEE-ETTTEEEEECCSCS
T ss_pred             CCEEEEEEcCCCCEEEEE-ecCCeEEEEECCCC
Confidence            999999999999999999 89999999998653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.8e-38  Score=289.16  Aligned_cols=249  Identities=15%  Similarity=0.194  Sum_probs=207.5

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC--ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG--KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+||++...  ..+.                   .+.+|...|++++|+|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~   63 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAH   63 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECC
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecC
Confidence            356789999999999999999999999999999999753  2232                   2468999999999986


Q ss_pred             C--CCEEEEEeCCCcEEEEeCCCcc--eeeeccCcCCCeEEEEEecC--CCeEEEEeCCCcEEEEeCCCCce--eEEeec
Q 010296          231 D--GRYLASGGLDRHIHLWDTRIQE--HIQAFPGHRGPVSCLTFRQG--TSELFSGSFDRTVKIWNAEDRAY--ISTLFG  302 (513)
Q Consensus       231 ~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~  302 (513)
                      +  +++|++|+.|++|+|||+.+++  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+.+
T Consensus        64 ~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  143 (297)
T 2pm7_B           64 PKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA  143 (297)
T ss_dssp             GGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred             CCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec
Confidence            4  8999999999999999998874  56677889999999999997  88999999999999999987632  456778


Q ss_pred             ccCCeEEEEeeCC--------------CeEEEEeCCCcEEEEecCCCe----e-eEEecCCCCeeEEEeecCC----eEE
Q 010296          303 HQSEVLTIDCLRK--------------ERVLTVGRDRSMQLWKVPEES----R-LVFRAPASSLECCCFISND----EFL  359 (513)
Q Consensus       303 ~~~~v~~~~~~~~--------------~~~~~~~~d~~i~iwd~~~~~----~-~~~~~~~~~v~~~~~~~~~----~~~  359 (513)
                      |...|.+++|+|+              ..|++++.|+.|++||+.+..    . ..+..|...|.+++|+|++    .|+
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la  223 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA  223 (297)
T ss_dssp             CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence            9999999999996              267799999999999998654    2 2567899999999999984    488


Q ss_pred             EEeCCCCEEEEecCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE
Q 010296          360 SGSDDGSIELWSLLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA  437 (513)
Q Consensus       360 ~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  437 (513)
                      +++.|++|+|||+.+...  ......                                  ...+...|.+++|+|++++|
T Consensus       224 s~s~D~~v~iWd~~~~~~~~~~~~~~----------------------------------~~~~~~~v~~~~~s~~g~~l  269 (297)
T 2pm7_B          224 SVSQDRTCIIWTQDNEQGPWKKTLLK----------------------------------EEKFPDVLWRASWSLSGNVL  269 (297)
T ss_dssp             EEETTSCEEEEEESSTTSCCEEEESS----------------------------------SSCCSSCEEEEEECSSSCCE
T ss_pred             EEECCCcEEEEEeCCCCCccceeeee----------------------------------cccCCCcEEEEEECCCCCEE
Confidence            999999999999876431  111110                                  02234459999999999999


Q ss_pred             EEecCCCcEEEEEeCCC
Q 010296          438 ASGAGNGSVRLWAIESE  454 (513)
Q Consensus       438 ~~g~~dg~v~vwd~~~~  454 (513)
                      ++++.||.|+||+....
T Consensus       270 as~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          270 ALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             EEEETTSCEEEEEECTT
T ss_pred             EEEcCCCcEEEEEECCC
Confidence            99999999999998744

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=303.91  Aligned_cols=317  Identities=16%  Similarity=0.222  Sum_probs=247.3

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      +|..........+.+|.+.|++++|+| ++++|++|+.||.|++|++.++.....+......      ........+|..
T Consensus        27 v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  100 (408)
T 4a11_B           27 VLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC------SIGRDHPDVHRY  100 (408)
T ss_dssp             HHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE------EECTTCTTCCSS
T ss_pred             eeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc------cccccccccCCC
Confidence            344444556667888999999999999 9999999999999999999988765543100000      000112246899


Q ss_pred             cEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCC---CeEEEEeCCCcEEEEeCCCCcee
Q 010296          222 HILALAVSS-DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT---SELFSGSFDRTVKIWNAEDRAYI  297 (513)
Q Consensus       222 ~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~  297 (513)
                      .|++++|+| ++.+|++++.||.|++||+.+++.+..+. +...+.++.|+|.+   .++++++.++.|++||+.+++.+
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  179 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS  179 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence            999999999 78899999999999999999999888877 78899999999854   48999999999999999999999


Q ss_pred             EEeecccCCeEEEEeeCCCe--EEEEeCCCcEEEEecCCCeee--EE---------------ecCCCCeeEEEeecCCe-
Q 010296          298 STLFGHQSEVLTIDCLRKER--VLTVGRDRSMQLWKVPEESRL--VF---------------RAPASSLECCCFISNDE-  357 (513)
Q Consensus       298 ~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~--~~---------------~~~~~~v~~~~~~~~~~-  357 (513)
                      ..+..|...|.+++|+|++.  +++++.|+.|++||++.....  .+               ..|...|.+++|+|++. 
T Consensus       180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  259 (408)
T 4a11_B          180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH  259 (408)
T ss_dssp             EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred             eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence            99999999999999999874  669999999999999876422  11               45778899999999985 


Q ss_pred             EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE
Q 010296          358 FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA  437 (513)
Q Consensus       358 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  437 (513)
                      |++++.||.|++||+.+++....+......                                .....+........+..+
T Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCN--------------------------------NSKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             EEEEETTSCEEEEETTTCCBCCCCCCCCCC--------------------------------CCSSCCCCEECCSSSSCE
T ss_pred             EEEecCCCeEEEEECCCCccceeccccccc--------------------------------cccccceeEEecCCCceE
Confidence            889999999999999998765443321110                                000012222223344567


Q ss_pred             EEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          438 ASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       438 ~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      ++++.++.|++||+.++ ..+..+..  |.+.|++++|+|++++|+++ +.||.|++|++.....
T Consensus       308 ~~~~~~~~i~v~d~~~~-~~~~~~~~--~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          308 VFVPYGSTIAVYTVYSG-EQITMLKG--HYKTVDCCVFQSNFQELYSG-SRDCNILAWVPSLYEP  368 (408)
T ss_dssp             EEEEETTEEEEEETTTC-CEEEEECC--CSSCEEEEEEETTTTEEEEE-ETTSCEEEEEECC---
T ss_pred             EEEecCCEEEEEECcCC-cceeeecc--CCCeEEEEEEcCCCCEEEEE-CCCCeEEEEeCCCCCc
Confidence            77788999999999987 44444433  78899999999999999999 8999999999877643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=296.59  Aligned_cols=317  Identities=14%  Similarity=0.254  Sum_probs=246.4

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCC---CCeEEEEeCCceEEEEeCCC-CccccccCCChhhhccCCCCCCCCCCCCC
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSED---DSKGFSASKDGSILHWDVSS-GKGVKYLWPSEEVLKSHGAKDPQGRATKQ  219 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~---~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (513)
                      +...+...+..+.+|.+.|++|+|+|+   |++|++|+.||.|+||++.+ +..+..                  .+.+|
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h   85 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMH   85 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE------------------EEEEC
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE------------------Eeccc
Confidence            445566777889999999999999999   69999999999999999987 433311                  23578


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEE--ecCCCeEEEEeCCCcEEEEeCCCCcee
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTF--RQGTSELFSGSFDRTVKIWNAEDRAYI  297 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~  297 (513)
                      ...|++++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++|  +|++.+|++++.||.|++||+++++.+
T Consensus        86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  164 (368)
T 3mmy_A           86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM  164 (368)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS
T ss_pred             cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE
Confidence            9999999999999999999999999999999988776 4559999999999  889999999999999999999999988


Q ss_pred             EEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEE---ecCCCCeeEEEeecCCe-----EEEEeCCCCEEE
Q 010296          298 STLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF---RAPASSLECCCFISNDE-----FLSGSDDGSIEL  369 (513)
Q Consensus       298 ~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~-----~~~~~~dg~i~i  369 (513)
                      ..+..+ ..+.++.+.++ .+++++.++.+++|++........   ......+.++.+.+...     +++++.+|.|++
T Consensus       165 ~~~~~~-~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i  242 (368)
T 3mmy_A          165 MVLQLP-ERCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI  242 (368)
T ss_dssp             EEEECS-SCEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred             EEEecC-CCceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence            888755 46777777644 677888999999999987654422   22334556666655432     889999999999


Q ss_pred             EecCCC---CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296          370 WSLLRK---KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV  446 (513)
Q Consensus       370 wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v  446 (513)
                      |++...   ..+..+........                         ......+...|++++|+|++++|++|+.||.|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i  297 (368)
T 3mmy_A          243 HYINPPNPAKDNFTFKCHRSNGT-------------------------NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF  297 (368)
T ss_dssp             EESSCSCHHHHSEEEECSEEC-----------------------------CCCEEECCEEEEEECTTTCCEEEEETTSCE
T ss_pred             EecCCCCccccceeeeeeecccc-------------------------cccccccccceEEEEEecCCCEEEEEccCCeE
Confidence            999887   44555543221100                         00002233459999999999999999999999


Q ss_pred             EEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC-cccceEEEec
Q 010296          447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA-ARNGVLVHPI  510 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~-~~~~~~~~~l  510 (513)
                      +|||+.++ ..+..+.  .|..+|++++|+|+|++|+++ +.|+..+.|+.... .+..++++++
T Consensus       298 ~iwd~~~~-~~~~~~~--~~~~~v~~~~~s~~g~~l~~~-s~d~~~~~~~~~~~~~~~~i~~~~~  358 (368)
T 3mmy_A          298 SFWDKDAR-TKLKTSE--QLDQPISACCFNHNGNIFAYA-SSYDWSKGHEFYNPQKKNYIFLRNA  358 (368)
T ss_dssp             EEEETTTT-EEEEECC--CCSSCEEEEEECTTSSCEEEE-ECCCSTTCGGGCCTTSCCEEEEECC
T ss_pred             EEEECCCC-cEEEEec--CCCCCceEEEECCCCCeEEEE-ecccccccccccCCCccceeeehhc
Confidence            99999987 4444443  378899999999999999999 66666666654432 3345566554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.3e-38  Score=297.53  Aligned_cols=248  Identities=15%  Similarity=0.200  Sum_probs=204.1

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR  233 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  233 (513)
                      ...+|...|++++|+|++. +++++.||+|+|||+.+++.....               .....+|...|++++|+|+++
T Consensus        89 ~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~---------------~~~~~~h~~~V~~v~~spdg~  152 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVN---------------KFAKYEHDDIVKTLSVFSDGT  152 (357)
T ss_dssp             EEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCC---------------CEEECCCSSCEEEEEECSSSS
T ss_pred             ccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEE---------------eeccCCCCCCEEEEEECCCCC
Confidence            3457999999999999976 556788999999999887654321               012347899999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCceeEEe--ecccCCeEEE
Q 010296          234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAYISTL--FGHQSEVLTI  310 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~  310 (513)
                      +|++|+.|+.|++||+.+++++..+.+|...|++++|+|++. ++++++.|+.|++||+++++++..+  ..+...+.++
T Consensus       153 ~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v  232 (357)
T 4g56_B          153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSV  232 (357)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccch
Confidence            999999999999999999999999999999999999999875 7889999999999999998876654  3467789999


Q ss_pred             EeeCCC--eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCC-e-EEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296          311 DCLRKE--RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISND-E-FLSGSDDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       311 ~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      +|+|++  .+++++.|+.|++||++++... .+..+...|.+++|+|++ . |++|+.|++|+|||+.+++++..+    
T Consensus       233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----  308 (357)
T 4g56_B          233 TWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----  308 (357)
T ss_dssp             EECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC----
T ss_pred             hhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC----
Confidence            999964  4568889999999999987765 667788999999999987 3 779999999999999998876553    


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEeCCCC
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAIESET  455 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~~~~~  455 (513)
                                                        .|...|++|+|+| ++.+|++|+.||+|++|++.+..
T Consensus       309 ----------------------------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          309 ----------------------------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             ----------------------------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             ----------------------------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence                                              2334499999998 79999999999999999997753

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-38  Score=293.23  Aligned_cols=249  Identities=21%  Similarity=0.327  Sum_probs=195.5

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      +|.+.|++++|+|++++|++|+.|++|+||++........            .......+.+|...|++++|+|++++|+
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~------------~~~~~~~~~~h~~~V~~v~~sp~g~~la  123 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF------------EMDLLAIIEGHENEVKGVAWSNDGYYLA  123 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C------------CCEEEEEEC----CEEEEEECTTSCEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc------------cceeEEEEcCCCCcEEEEEECCCCCEEE
Confidence            3999999999999999999999999999999864321000            0000112468999999999999999999


Q ss_pred             EEeCCCcEEEEeCCC----cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC--ceeEEeecccCCeEEE
Q 010296          237 SGGLDRHIHLWDTRI----QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR--AYISTLFGHQSEVLTI  310 (513)
Q Consensus       237 s~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~  310 (513)
                      +|+.|++|++||+..    .+++..+.+|...|.+++|+|++.+|++++.|++|++|++.++  +++..+.+|...|.++
T Consensus       124 s~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~  203 (330)
T 2hes_X          124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS  203 (330)
T ss_dssp             EEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred             EEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEE
Confidence            999999999999943    2467788899999999999999999999999999999998776  6788899999999999


Q ss_pred             EeeCC--C-eEEEEeCCCcEEEEecCCC--------eee-EEec-CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCe
Q 010296          311 DCLRK--E-RVLTVGRDRSMQLWKVPEE--------SRL-VFRA-PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       311 ~~~~~--~-~~~~~~~d~~i~iwd~~~~--------~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  377 (513)
                      +|+|+  + .+++++.|++|++|++...        ... .+.. |...|.+++|++++.|++++.||.|+||+..++..
T Consensus       204 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~  283 (330)
T 2hes_X          204 DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEW  283 (330)
T ss_dssp             EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEE
T ss_pred             EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCce
Confidence            99997  4 5779999999999998654        122 2223 77899999999988899999999999999877642


Q ss_pred             --eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcc-eEEEEEEec--CCCEEEEecCCCcEEEEEeC
Q 010296          378 --VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYS-WVSSVTVCG--GSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       378 --~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~--~~~~l~~g~~dg~v~vwd~~  452 (513)
                        +....                                    ..|.. .|.+++|+|  ++++|++|+.||+|+||++.
T Consensus       284 ~~~~~~~------------------------------------~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          284 KVFAKRA------------------------------------LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEEEEES------------------------------------CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EEEeccc------------------------------------cccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence              22221                                    12222 499999999  78999999999999999986


Q ss_pred             C
Q 010296          453 S  453 (513)
Q Consensus       453 ~  453 (513)
                      .
T Consensus       328 ~  328 (330)
T 2hes_X          328 K  328 (330)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.7e-37  Score=286.08  Aligned_cols=247  Identities=18%  Similarity=0.321  Sum_probs=207.7

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--cceeeeccCcCCCeEEEEEecC--CCeEEEEeCCCcEEEEeC
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI--QEHIQAFPGHRGPVSCLTFRQG--TSELFSGSFDRTVKIWNA  291 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~  291 (513)
                      +.+|...|++++|+|+|++||+|+.|++|+||++..  .+.+..+.+|...|++++|+++  +++|++|+.|++|++||+
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            468999999999999999999999999999999974  4678889999999999999863  889999999999999999


Q ss_pred             CCCc--eeEEeecccCCeEEEEeeCC--C-eEEEEeCCCcEEEEecCCCe---eeEEecCCCCeeEEEeecCC-------
Q 010296          292 EDRA--YISTLFGHQSEVLTIDCLRK--E-RVLTVGRDRSMQLWKVPEES---RLVFRAPASSLECCCFISND-------  356 (513)
Q Consensus       292 ~~~~--~~~~~~~~~~~v~~~~~~~~--~-~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~-------  356 (513)
                      .+++  .+..+.+|...|.+++|+|+  + .+++++.|+.|++|+++...   ...+..|...+.+++|+|++       
T Consensus        85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~  164 (297)
T 2pm7_B           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  164 (297)
T ss_dssp             SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-------
T ss_pred             CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccC
Confidence            8874  56667789999999999996  4 67799999999999998653   34677888999999999962       


Q ss_pred             -------eEEEEeCCCCEEEEecCCCCe----eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296          357 -------EFLSGSDDGSIELWSLLRKKP----VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV  425 (513)
Q Consensus       357 -------~~~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  425 (513)
                             .|++|+.|++|+|||+.++..    ...+                                     ..|..+|
T Consensus       165 ~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-------------------------------------~~H~~~V  207 (297)
T 2pm7_B          165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-------------------------------------EGHSDWV  207 (297)
T ss_dssp             -----CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-------------------------------------CCCSSCE
T ss_pred             CCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-------------------------------------cCCCCce
Confidence                   588999999999999987662    2333                                     3455669


Q ss_pred             EEEEEecCC---CEEEEecCCCcEEEEEeCCCCcce--eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          426 SSVTVCGGS---DLAASGAGNGSVRLWAIESETKDI--QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       426 ~~~~~s~~~---~~l~~g~~dg~v~vwd~~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      .+++|+|++   .+|++++.|++|+||++.......  ..+....|...|.+++|+|+|++|+++ +.|+.|++|+....
T Consensus       208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~-~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS-GGDNKVTLWKENLE  286 (297)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE-ETTSCEEEEEECTT
T ss_pred             EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEE-cCCCcEEEEEECCC
Confidence            999999984   899999999999999998752211  122213467889999999999999999 89999999987643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.2e-38  Score=294.32  Aligned_cols=283  Identities=13%  Similarity=0.237  Sum_probs=238.5

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      |.++|.+++|+|+|++++++..++.+.+|..........                   ..+|...|++++|+|++++|++
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~~   68 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVYT   68 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEEE
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEEE
Confidence            567899999999999999888777776665443322221                   2478999999999999999999


Q ss_pred             EeCCCcEEEEeCCCcceeeec---c--CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc--eeEEeecccCCeEEE
Q 010296          238 GGLDRHIHLWDTRIQEHIQAF---P--GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA--YISTLFGHQSEVLTI  310 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~---~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~  310 (513)
                      ++ +|.|++|++.++.....+   .  .|...|.+++|+|++++|++++.|+.|++||+.+++  ....+..|...+.++
T Consensus        69 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~  147 (337)
T 1gxr_A           69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL  147 (337)
T ss_dssp             EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred             cC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEE
Confidence            99 999999999877643333   2  688999999999999999999999999999999887  566778899999999


Q ss_pred             EeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296          311 DCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPL  387 (513)
Q Consensus       311 ~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (513)
                      +|+|++ .+++++.++.|++||+.+.... .+..|...+.+++|+|++. +++++.||.|++||+.+++.+..+...   
T Consensus       148 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---  224 (337)
T 1gxr_A          148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT---  224 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC---
Confidence            999987 5668889999999999988766 5566888999999999985 789999999999999999887776432   


Q ss_pred             ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcc
Q 010296          388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLV  467 (513)
Q Consensus       388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~  467 (513)
                                                         ..+.+++|+|++++|++++.+|.|++|++.+..    ......|.
T Consensus       225 -----------------------------------~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~  265 (337)
T 1gxr_A          225 -----------------------------------SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHE  265 (337)
T ss_dssp             -----------------------------------SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCS
T ss_pred             -----------------------------------CceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCc
Confidence                                               229999999999999999999999999998872    22333478


Q ss_pred             cEEEEEEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296          468 GFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       468 ~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                      ..|.+++|+|++++|+++ +.||.|++|+...+...
T Consensus       266 ~~v~~~~~~~~~~~l~~~-~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          266 SCVLSLKFAYCGKWFVST-GKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEE
T ss_pred             cceeEEEECCCCCEEEEe-cCCCcEEEEECCCCeEE
Confidence            899999999999999998 88999999998876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.7e-38  Score=329.63  Aligned_cols=290  Identities=17%  Similarity=0.254  Sum_probs=249.7

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ..+.+.+|.+.|++++|+|++++|++|+.||.|+|||+.++..+..+                   ..|..+|++++|+|
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-------------------~~~~~~v~~~~~s~   65 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-------------------QVTETPVRAGKFIA   65 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-------------------ECCSSCEEEEEEEG
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-------------------ecCCCcEEEEEEeC
Confidence            44677899999999999999999999999999999999998877654                   57899999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-ceeEEeecccCCeEE
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-AYISTLFGHQSEVLT  309 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~  309 (513)
                      ++++|++|+.||.|++|++.+++.+..+.+|...|++++|+|++++|++++.||.|++|++.++ .....+.+|...|.+
T Consensus        66 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~  145 (814)
T 3mkq_A           66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC  145 (814)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999887 667788889999999


Q ss_pred             EEeeC-CC-eEEEEeCCCcEEEEecCCCeee-EEe-cCCCCeeEEEeec--CCe-EEEEeCCCCEEEEecCCCCeeEEee
Q 010296          310 IDCLR-KE-RVLTVGRDRSMQLWKVPEESRL-VFR-APASSLECCCFIS--NDE-FLSGSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       310 ~~~~~-~~-~~~~~~~d~~i~iwd~~~~~~~-~~~-~~~~~v~~~~~~~--~~~-~~~~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      ++|+| ++ .+++++.|+.|++|++.+.... ... .+...+.+++|+|  ++. +++++.+|.|++||+.+++++..+.
T Consensus       146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  225 (814)
T 3mkq_A          146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE  225 (814)
T ss_dssp             EEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence            99999 65 5668999999999999776554 333 3448899999998  664 8899999999999999998888775


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeee
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLY  462 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~  462 (513)
                      .                                     |...|++++|+|++++|++++.||.|++||+.++ .....+.
T Consensus       226 ~-------------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~  267 (814)
T 3mkq_A          226 G-------------------------------------HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN  267 (814)
T ss_dssp             C-------------------------------------CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC
T ss_pred             C-------------------------------------CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee
Confidence            3                                     2234999999999999999999999999999887 3333333


Q ss_pred             ecCcccEEEEEEeecCCCEE-EEEecCCCcccccccCCC
Q 010296          463 NLPLVGFVNSLAFAKSGQFL-IAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       463 ~~~~~~~v~~v~~sp~~~~l-~~~~~~dg~v~~W~~~~~  500 (513)
                      .  +...|.+++|+|++..+ +++ +.++.+.+|+....
T Consensus       268 ~--~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          268 V--GLERSWCIATHPTGRKNYIAS-GFDNGFTVLSLGND  303 (814)
T ss_dssp             C--SSSSEEEEEECTTCGGGEEEE-EETTEEEEEECSCC
T ss_pred             c--CCCcEEEEEEccCCCceEEEE-EeCCCEEEEEcCCC
Confidence            3  66789999999999843 333 45667888887554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.6e-39  Score=302.78  Aligned_cols=296  Identities=9%  Similarity=0.037  Sum_probs=219.8

Q ss_pred             CCCeEEEEECCCCCeEEEEeCC-------ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          159 RQSVTAVALSEDDSKGFSASKD-------GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      .-||+|++|+|++++|++||.+       +.|++|++.........     .+...    ....+.+|...|.+++++  
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-----~~~~~----~~~~l~~~~~~v~s~~~~--   82 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-----QFHIL----SEFALEDNDDSPTAIDAS--   82 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-----HEEEE----EEEECCTTSCCCCEEEEE--
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-----eeeee----eEEEccCCCCceEEEEeC--
Confidence            4589999999999999999754       35999998866533210     00000    001235677788888775  


Q ss_pred             CCEEEEEe-----------CCCcEEEEeCCCccee----ee-----ccCcCCCeEEEEEecCCCeEEEE--eCCCcEEEE
Q 010296          232 GRYLASGG-----------LDRHIHLWDTRIQEHI----QA-----FPGHRGPVSCLTFRQGTSELFSG--SFDRTVKIW  289 (513)
Q Consensus       232 ~~~l~s~~-----------~dg~i~vwd~~~~~~~----~~-----~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw  289 (513)
                      +..+++|.           .++.+++|++......    ..     ...+...+.+++|+|+|++|+++  +.|++|+||
T Consensus        83 ~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iw  162 (365)
T 4h5i_A           83 KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRII  162 (365)
T ss_dssp             TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEE
T ss_pred             CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEe
Confidence            55666654           4678999987654321    11     12345568999999999998754  478999999


Q ss_pred             eCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeE---EecCCCCeeEEEeecCCe-EEEEeCCC
Q 010296          290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLV---FRAPASSLECCCFISNDE-FLSGSDDG  365 (513)
Q Consensus       290 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~~~~~dg  365 (513)
                      |+.+++++..+. |...|.+++|+|++.+++.+.++.+++|+..++....   ...|...+.+++|+|++. +++++.++
T Consensus       163 d~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~  241 (365)
T 4h5i_A          163 DPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK  241 (365)
T ss_dssp             ETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred             ECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence            999999988876 7788999999999988877777788888887766542   345667899999999997 66777776


Q ss_pred             ----CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296          366 ----SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA  441 (513)
Q Consensus       366 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  441 (513)
                          .+++|++............                                 ...|...|++++|+|+|++||+|+
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQ---------------------------------VTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEE---------------------------------EESSCSCEEEEEECTTSCEEEEEE
T ss_pred             cceeEEeecccccceecceeeee---------------------------------ecCCCCCeEeEEECCCCCceEEEc
Confidence                5788888766432211100                                 033445599999999999999999


Q ss_pred             CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          442 GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       442 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      .|++|+|||+.++ +.+..+. ..|..+|++|+|||||++||++ +.|++|+||++..+..
T Consensus       289 ~D~~V~iwd~~~~-~~~~~~~-~gH~~~V~~v~fSpdg~~laS~-S~D~tvrvw~ip~~~~  346 (365)
T 4h5i_A          289 NDNSIALVKLKDL-SMSKIFK-QAHSFAITEVTISPDSTYVASV-SAANTIHIIKLPLNYA  346 (365)
T ss_dssp             TTSCEEEEETTTT-EEEEEET-TSSSSCEEEEEECTTSCEEEEE-ETTSEEEEEECCTTTT
T ss_pred             CCCEEEEEECCCC-cEEEEec-CcccCCEEEEEECCCCCEEEEE-eCCCeEEEEEcCCCCc
Confidence            9999999999987 3333321 2389999999999999999999 9999999999876543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.4e-37  Score=340.27  Aligned_cols=288  Identities=18%  Similarity=0.350  Sum_probs=253.6

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      ...+.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+                   .+|...|++++|+|+
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-------------------~~h~~~v~~~~~s~~  668 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-------------------KAHEDEVLCCAFSSD  668 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-------------------CCCSSCEEEEEECTT
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe-------------------ccCCCCEEEEEEecC
Confidence            3457799999999999999999999999999999999999877654                   579999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec--CCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEE
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ--GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLT  309 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  309 (513)
                      +++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|  ++.++++++.|+.|++||+.+++++..+.+|...|.+
T Consensus       669 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~  748 (1249)
T 3sfz_A          669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH  748 (1249)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence            99999999999999999999999999999999999999999  5568999999999999999999999999999999999


Q ss_pred             EEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEec--------------CCCCeeEEEeecCCeEEEEeCCCCEEEEecCC
Q 010296          310 IDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRA--------------PASSLECCCFISNDEFLSGSDDGSIELWSLLR  374 (513)
Q Consensus       310 ~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~  374 (513)
                      ++|+|++ .+++++.|+.|++||+.++.......              ....+.+++|+|++.+++++.++.+.+|++.+
T Consensus       749 ~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~  828 (1249)
T 3sfz_A          749 CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHT  828 (1249)
T ss_dssp             EEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTT
T ss_pred             EEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecC
Confidence            9999987 56689999999999998876553221              23368889999999866555689999999999


Q ss_pred             CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      +..+..+...                                    |...|.+++|+|+++++++++.+|.|++|++.++
T Consensus       829 ~~~~~~~~~~------------------------------------~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~  872 (1249)
T 3sfz_A          829 SGLLAEIHTG------------------------------------HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR  872 (1249)
T ss_dssp             CCEEEEEECS------------------------------------SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT
T ss_pred             CCceeEEcCC------------------------------------CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9988887633                                    3344999999999999999999999999999987


Q ss_pred             CcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          455 TKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                       ..+..+.  .|.+.|++++|+|+|++|+++ +.||.|++|+..
T Consensus       873 -~~~~~~~--~h~~~v~~v~~spdg~~l~s~-s~dg~v~vw~~~  912 (1249)
T 3sfz_A          873 -LKVADCR--GHLSWVHGVMFSPDGSSFLTA-SDDQTIRVWETK  912 (1249)
T ss_dssp             -EEEEEEC--CCSSCEEEEEECTTSSEEEEE-ETTSCEEEEEHH
T ss_pred             -ceeeecC--CCccceEEEEECCCCCEEEEE-eCCCeEEEEEcc
Confidence             3333333  388999999999999999999 899999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.5e-37  Score=301.68  Aligned_cols=284  Identities=21%  Similarity=0.381  Sum_probs=241.5

Q ss_pred             cchhhhhccCCCe-EEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          150 DEFRVLLKHRQSV-TAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       150 ~~~~~~~~h~~~V-~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      .....+.+|...| +++.+  ++++|++|+.||+|++||+.+++.+..+                   .+|...|++++|
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-------------------~~h~~~V~~l~~  170 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-------------------SGHDGGVWALKY  170 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-------------------CCCSSCEEEEEE
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-------------------eCCCcCEEEEEE
Confidence            4456788998885 66666  5679999999999999999998877654                   589999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEe--cCCCeEEEEeCCCcEEEEeCCCCce----------
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR--QGTSELFSGSFDRTVKIWNAEDRAY----------  296 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~----------  296 (513)
                      +|++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|+  +++.+|++++.||.|++||+.++..          
T Consensus       171 ~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~  249 (464)
T 3v7d_B          171 AHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY  249 (464)
T ss_dssp             CSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS
T ss_pred             cCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc
Confidence            9988 99999999999999999999999999999999999998  5778999999999999999987652          


Q ss_pred             -------------eEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEE
Q 010296          297 -------------ISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSG  361 (513)
Q Consensus       297 -------------~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~  361 (513)
                                   +..+.+|...+.++... ...+++++.|+.|++||+.+...+ .+..|...+.+++|+|++. +++|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg  328 (464)
T 3v7d_B          250 PLVFHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA  328 (464)
T ss_dssp             SEEESCGGGCTTEEEEECCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             ceEeeccCCCeEEEEEccCccceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEE
Confidence                         44567788888887432 346779999999999999988776 5667889999999999885 8899


Q ss_pred             eCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296          362 SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA  441 (513)
Q Consensus       362 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  441 (513)
                      +.||.|++||+.+++++..+..                                     |...|.+++|+  +.+|++|+
T Consensus       329 ~~dg~i~vwd~~~~~~~~~~~~-------------------------------------h~~~v~~~~~~--~~~l~s~s  369 (464)
T 3v7d_B          329 SMDTTIRIWDLENGELMYTLQG-------------------------------------HTALVGLLRLS--DKFLVSAA  369 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC-------------------------------------CSSCEEEEEEC--SSEEEEEE
T ss_pred             eCCCcEEEEECCCCcEEEEEeC-------------------------------------CCCcEEEEEEc--CCEEEEEe
Confidence            9999999999999998888743                                     33449999997  47999999


Q ss_pred             CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          442 GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       442 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      .||.|++||+.+...    .....+...+..++|+|++++|+++ + ||.|++|++..+.
T Consensus       370 ~dg~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~-~-dg~i~iwd~~~g~  423 (464)
T 3v7d_B          370 ADGSIRGWDANDYSR----KFSYHHTNLSAITTFYVSDNILVSG-S-ENQFNIYNLRSGK  423 (464)
T ss_dssp             TTSEEEEEETTTCCE----EEEEECTTCCCEEEEEECSSEEEEE-E-TTEEEEEETTTCC
T ss_pred             CCCcEEEEECCCCce----eeeecCCCCccEEEEEeCCCEEEEe-c-CCeEEEEECCCCc
Confidence            999999999988732    2222356678889999999999988 5 8999999987764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2e-37  Score=291.90  Aligned_cols=261  Identities=19%  Similarity=0.314  Sum_probs=211.7

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      .+...+.+|...|++++|+|++.+|++|+.|++|++||+.++..+..+                   .+|...|++++|+
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~-------------------~~h~~~v~~v~~s  127 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-------------------VGHQSEVYSVAFS  127 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE-------------------ECCCSCEEEEEEC
T ss_pred             cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE-------------------cCCCCcEEEEEEC
Confidence            445678899999999999999999999999999999999998876644                   6799999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeee--ccCcCCCeEEEEEecCC----------CeEEEEeCCCcEEEEeCCCCcee
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQA--FPGHRGPVSCLTFRQGT----------SELFSGSFDRTVKIWNAEDRAYI  297 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~  297 (513)
                      |++++|++++.|+.|++||+........  ...|...|.+++|+|++          .+|++++.|+.|++||. .....
T Consensus       128 p~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~  206 (343)
T 2xzm_R          128 PDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIR  206 (343)
T ss_dssp             SSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEE
T ss_pred             CCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCcee
Confidence            9999999999999999999974433222  23689999999999987          78999999999999994 55677


Q ss_pred             EEeecccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCC-CeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCC
Q 010296          298 STLFGHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPE-ESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       298 ~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~  375 (513)
                      ..+.+|...|.+++|+|++. |++++.|+.|++||+.. ........+...|.+++|+|++.+++++.|+.|++|++.++
T Consensus       207 ~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~  286 (343)
T 2xzm_R          207 YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQ  286 (343)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSC
T ss_pred             EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCC
Confidence            78889999999999999884 56899999999999943 33334444566799999999998888888999999999887


Q ss_pred             CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      +.............             .           ......|...|++++|+|+|++|++|+.||.|++|++.++
T Consensus       287 ~~~~~~~~~~~~~~-------------~-----------~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          287 SKAPVCTIEAEPIT-------------K-----------AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CSCSEEECCCCSGG-------------G-----------BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CCCceEEeecCcch-------------h-----------hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            65442211100000             0           0000245566999999999999999999999999998654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.1e-36  Score=297.77  Aligned_cols=294  Identities=19%  Similarity=0.359  Sum_probs=252.0

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+......+..+.+|.+.|++++|+  +.+|++|+.||+|++||+.+++.+..+                   .+|...
T Consensus       143 vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------~~h~~~  201 (445)
T 2ovr_B          143 VWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL-------------------YGHTST  201 (445)
T ss_dssp             EEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE-------------------CCCSSC
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE-------------------CCCCCc
Confidence            56667777888899999999999997  579999999999999999998877654                   578899


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      |.+++|+  +++|++|+.||.|++||+.+++.+..+.+|...|.+++|  ++.+|++++.||.|++||+.+++.+..+.+
T Consensus       202 v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  277 (445)
T 2ovr_B          202 VRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG  277 (445)
T ss_dssp             EEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred             EEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC
Confidence            9999996  568999999999999999999999999999999999999  678899999999999999999999999999


Q ss_pred             ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEe
Q 010296          303 HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       303 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                      |...|.++.| ....+++++.|+.|++||+.++... .+..|...+.++.+.+ ..+++++.||.|++||+.+++++..+
T Consensus       278 ~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~  355 (445)
T 2ovr_B          278 HTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQTL  355 (445)
T ss_dssp             CSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC-CEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            9999999999 4457789999999999999888766 5667777888887753 47889999999999999999988887


Q ss_pred             ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296          382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL  461 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~  461 (513)
                      ...                                  ..|...|++++|+  +++|++|+.||.|++||+.++ ..+..+
T Consensus       356 ~~~----------------------------------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~-~~~~~~  398 (445)
T 2ovr_B          356 QGP----------------------------------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG-EFIRNL  398 (445)
T ss_dssp             CST----------------------------------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC-CEEEEE
T ss_pred             ccC----------------------------------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC-ceeeee
Confidence            532                                  2244559999996  579999999999999999988 344444


Q ss_pred             ee---cCcccEEEEEEeecCCCEEEEEecCCCc----ccccccCCCc
Q 010296          462 YN---LPLVGFVNSLAFAKSGQFLIAGVGQEPR----LGRWGHLPAA  501 (513)
Q Consensus       462 ~~---~~~~~~v~~v~~sp~~~~l~~~~~~dg~----v~~W~~~~~~  501 (513)
                      ..   ..+.+.|++++|+|++.+|+++ +.||+    |.+||.....
T Consensus       399 ~~~~~~~~~~~v~~~~~s~~~~~la~~-~~dg~~~~~l~v~df~~~~  444 (445)
T 2ovr_B          399 VTLESGGSGGVVWRIRASNTKLVCAVG-SRNGTEETKLLVLDFDVDM  444 (445)
T ss_dssp             EECTTGGGTCEEEEEEECSSEEEEEEE-CSSSSSCCEEEEEECCCCC
T ss_pred             eccccCCCCceEEEEEecCCEEEEEEc-ccCCCCccEEEEEECCCCC
Confidence            21   2478899999999999999999 88997    9999987653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.4e-36  Score=283.26  Aligned_cols=276  Identities=20%  Similarity=0.317  Sum_probs=232.3

Q ss_pred             eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC
Q 010296          162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD  241 (513)
Q Consensus       162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  241 (513)
                      +++|+||+++ +||+| .|++|+|||+.+++.+..+                 ...+|...|++++|+|++++|++|+.|
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs~D   88 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGTSS   88 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEECC
Confidence            5789999986 66665 5999999999999887655                 345788899999999999999999999


Q ss_pred             CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-ceeEEeecccCCeEEEEeeCCC-eEE
Q 010296          242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-AYISTLFGHQSEVLTIDCLRKE-RVL  319 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~~  319 (513)
                      |+|++|++.+++.+..+.+|...+.++.+  ++..|++++.++.+++|+.... ..+..+.+|...+..+.+.+++ .++
T Consensus        89 g~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (318)
T 4ggc_A           89 AEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA  166 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             CcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEE
Confidence            99999999999999999999998887665  4578999999999999999875 4466788899999999999987 556


Q ss_pred             EEeCCCcEEEEecCCCee-----eEEecCCCCeeEEEeecCCe----EEEEeCCCCEEEEecCCCCeeEEeecCCCcccC
Q 010296          320 TVGRDRSMQLWKVPEESR-----LVFRAPASSLECCCFISNDE----FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDG  390 (513)
Q Consensus       320 ~~~~d~~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~----~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  390 (513)
                      +++.|+.|++||+.+++.     .....+...+.++.+++.+.    +++++.++.|++|+...............    
T Consensus       167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~----  242 (318)
T 4ggc_A          167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----  242 (318)
T ss_dssp             EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC----
T ss_pred             EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee----
Confidence            899999999999987542     24566778899999998763    34677889999999998887766543322    


Q ss_pred             CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec--CCCcEEEEEeCCCCcceeeeeecCccc
Q 010296          391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA--GNGSVRLWAIESETKDIQPLYNLPLVG  468 (513)
Q Consensus       391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~--~dg~v~vwd~~~~~~~~~~~~~~~~~~  468 (513)
                                                        +..+.|+|++..+++++  .||.|+|||+.++ ..+..+..  |.+
T Consensus       243 ----------------------------------v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~g--H~~  285 (318)
T 4ggc_A          243 ----------------------------------VCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKG--HTS  285 (318)
T ss_dssp             ----------------------------------EEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECC--CSS
T ss_pred             ----------------------------------eeeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEcC--CCC
Confidence                                              89999999998887654  7999999999987 45555544  889


Q ss_pred             EEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          469 FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      .|++|+|+|+|++|+++ +.||+|+||++...
T Consensus       286 ~V~~l~~spdg~~l~S~-s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          286 RVLSLTMSPDGATVASA-AADETLRLWRCFEL  316 (318)
T ss_dssp             CEEEEEECTTSSCEEEE-ETTTEEEEECCSCC
T ss_pred             CEEEEEEcCCCCEEEEE-ecCCeEEEEECCCC
Confidence            99999999999999999 99999999998653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.9e-38  Score=298.42  Aligned_cols=268  Identities=18%  Similarity=0.277  Sum_probs=225.3

Q ss_pred             cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      ++|+.........+..|...|.+++|+|++++|++|+.|+.|+||++.+......            .......+.+|..
T Consensus        91 ~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~------------~~~~~~~~~gh~~  158 (380)
T 3iz6_a           91 IVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG------------NMPVSRVLTGHKG  158 (380)
T ss_dssp             EEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC------------SSTTCCBCCCCSS
T ss_pred             EEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC------------CccceeeccCCCc
Confidence            3577777788888999999999999999999999999999999999976432110            0111224578999


Q ss_pred             cEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCcceeeec-----cCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCC-C
Q 010296          222 HILALAVSSD-GRYLASGGLDRHIHLWDTRIQEHIQAF-----PGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAE-D  293 (513)
Q Consensus       222 ~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~-~  293 (513)
                      .|.++.|+|+ +..|++|+.|++|++||+.+++.+..+     .+|...|.+++|++ ++.+|++|+.|++|++||++ .
T Consensus       159 ~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~  238 (380)
T 3iz6_a          159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT  238 (380)
T ss_dssp             CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred             ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC
Confidence            9999999996 457999999999999999999988776     67999999999987 78899999999999999998 4


Q ss_pred             CceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEe-cC-------CCCeeEEEeecCCe-EEEEeC
Q 010296          294 RAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFR-AP-------ASSLECCCFISNDE-FLSGSD  363 (513)
Q Consensus       294 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~-~~-------~~~v~~~~~~~~~~-~~~~~~  363 (513)
                      ...+..+.+|...|.+++|+|++ .+++++.|++|++||++++..+... .+       ...+.+++|+|++. +++|+.
T Consensus       239 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  318 (380)
T 3iz6_a          239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS  318 (380)
T ss_dssp             CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT
T ss_pred             CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC
Confidence            57788899999999999999987 5668999999999999998776432 22       12488999999986 779999


Q ss_pred             CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC
Q 010296          364 DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN  443 (513)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  443 (513)
                      ||.|++||+.+++.+..+....                                 ..|...|++++|+|+|++|++|+.|
T Consensus       319 dg~i~vwd~~~~~~~~~~~~~~---------------------------------~~h~~~v~~l~~s~dg~~l~sgs~D  365 (380)
T 3iz6_a          319 NGDCYVWDTLLAEMVLNLGTLQ---------------------------------NSHEGRISCLGLSSDGSALCTGSWD  365 (380)
T ss_dssp             TSCEEEEETTTCCEEEEECCSC---------------------------------SSCCCCCCEEEECSSSSEEEEECTT
T ss_pred             CCCEEEEECCCCceEEEEeccc---------------------------------CCCCCceEEEEECCCCCEEEEeeCC
Confidence            9999999999988877663211                                 3455669999999999999999999


Q ss_pred             CcEEEEEeCCC
Q 010296          444 GSVRLWAIESE  454 (513)
Q Consensus       444 g~v~vwd~~~~  454 (513)
                      |+|+||++...
T Consensus       366 ~~i~iW~~~~~  376 (380)
T 3iz6_a          366 KNLKIWAFSGH  376 (380)
T ss_dssp             SCEEEEECCSS
T ss_pred             CCEEEEecCCC
Confidence            99999999765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.6e-37  Score=313.31  Aligned_cols=354  Identities=13%  Similarity=0.162  Sum_probs=267.0

Q ss_pred             ccCCCcc----cchhhhhccCCC-eEEEEECC--CCCeEEEEeCCceEEEEeCCCC--------ccccccC---------
Q 010296          143 VQKPEAT----DEFRVLLKHRQS-VTAVALSE--DDSKGFSASKDGSILHWDVSSG--------KGVKYLW---------  198 (513)
Q Consensus       143 ~~~~~~~----~~~~~~~~h~~~-V~~~~~s~--~~~~l~t~~~dg~v~iwd~~~~--------~~~~~~~---------  198 (513)
                      +|+....    .....+.+|.+. |++++|+|  ++++|++|+.||+|+||++.++        .....+.         
T Consensus        43 v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  122 (615)
T 1pgu_A           43 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI  122 (615)
T ss_dssp             EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEE
T ss_pred             EEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEE
Confidence            4445445    677889999999 99999999  9999999999999999999744        2222221         


Q ss_pred             ---CChhhh-------------ccCCCCCCCCCCCCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCcceeeeccCc
Q 010296          199 ---PSEEVL-------------KSHGAKDPQGRATKQSKHILALAVSSDGR-YLASGGLDRHIHLWDTRIQEHIQAFPGH  261 (513)
Q Consensus       199 ---~~~~~~-------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~  261 (513)
                         +....+             ...........+.+|...|++++|+|++. +|++++.|+.|++||+.+++.+..+.+|
T Consensus       123 ~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~  202 (615)
T 1pgu_A          123 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH  202 (615)
T ss_dssp             EECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS
T ss_pred             EEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeeccc
Confidence               111000             00111223345667899999999999998 8999999999999999999999999999


Q ss_pred             CC---CeEEEEEecC-CCeEEEEeCCCcEEEEeCCCCceeEEe-e---cccCCeEEEEeeCCC-eEEEEeCCCcEEEEec
Q 010296          262 RG---PVSCLTFRQG-TSELFSGSFDRTVKIWNAEDRAYISTL-F---GHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKV  332 (513)
Q Consensus       262 ~~---~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~  332 (513)
                      ..   .|.+++|+|+ +++|++++.||.|++||+.+++.+..+ .   .|...|.++.|+ ++ .+++++.|+.|++||+
T Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~  281 (615)
T 1pgu_A          203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV  281 (615)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET
T ss_pred             CCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC
Confidence            99   9999999999 999999999999999999999999888 5   899999999999 66 5668999999999999


Q ss_pred             CCCeeeE-EecC----CCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCC--------------
Q 010296          333 PEESRLV-FRAP----ASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKN--------------  393 (513)
Q Consensus       333 ~~~~~~~-~~~~----~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------------  393 (513)
                      .++.... +..+    ...+.++.++....+++++.+|.|++||+.+++++..+..+......+..              
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~  361 (615)
T 1pgu_A          282 TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIME  361 (615)
T ss_dssp             TTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEE
T ss_pred             CCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEE
Confidence            9887764 3333    25677888876667999999999999999988777666543221111000              


Q ss_pred             ------------------cc--------cCcCccccccC-----------------------------------------
Q 010296          394 ------------------FE--------QDEGKISNGHS-----------------------------------------  406 (513)
Q Consensus       394 ------------------~~--------~~~~~i~~~~~-----------------------------------------  406 (513)
                                        +.        ..++.+..+..                                         
T Consensus       362 w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (615)
T 1pgu_A          362 WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK  441 (615)
T ss_dssp             TTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence                              00        00011111100                                         


Q ss_pred             ----------------------C-CCCCCCCC--------cCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC
Q 010296          407 ----------------------E-NGNLNPGS--------YHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET  455 (513)
Q Consensus       407 ----------------------~-~~~~~~~~--------~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~  455 (513)
                                            . .+.+....        .....|...|++++|+|++++|++++.||.|++|++.++ 
T Consensus       442 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-  520 (615)
T 1pgu_A          442 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-  520 (615)
T ss_dssp             EEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred             ecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-
Confidence                                  0 11111000        222457788999999999999999999999999999887 


Q ss_pred             cceeeeeecCcccEEEEEEeec----------CCCEEEEEecCCCcccccccCCC
Q 010296          456 KDIQPLYNLPLVGFVNSLAFAK----------SGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       456 ~~~~~~~~~~~~~~v~~v~~sp----------~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      ..+..+.. .|...|++++|+|          ++++|+++ +.||.|++|++..+
T Consensus       521 ~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~  573 (615)
T 1pgu_A          521 EVKTSRWA-FRTSKINAISWKPAEKGANEEEIEEDLVATG-SLDTNIFIYSVKRP  573 (615)
T ss_dssp             EEEECCSC-CCSSCEEEEEECCCC------CCSCCEEEEE-ETTSCEEEEESSCT
T ss_pred             cceeEeec-CCCCceeEEEEcCccccccccccCCCEEEEE-cCCCcEEEEECCCC
Confidence            33322221 1788999999999          99999999 89999999999775

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-37  Score=324.66  Aligned_cols=202  Identities=11%  Similarity=0.093  Sum_probs=175.9

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      .+|.+.|++++|+|++++||+|+.||+|+||+..+......                    ..|...|.+++|+| +++|
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--------------------~~~~~~V~~l~fsp-g~~L   72 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--------------------LEDRSAIKEMRFVK-GIYL   72 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE--------------------CSSCCCEEEEEEET-TTEE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--------------------cCCCCCEEEEEEcC-CCEE
Confidence            48999999999999999999999999999999887655432                    24678899999999 8899


Q ss_pred             EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee-----------EEeeccc
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI-----------STLFGHQ  304 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~  304 (513)
                      ++++.|++|+|||+.+++++..+. |...|++++|+|++++|++|+.||.|++||+.++.+.           ..+.+|.
T Consensus        73 ~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~  151 (902)
T 2oaj_A           73 VVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL  151 (902)
T ss_dssp             EEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred             EEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence            999999999999999999988886 7789999999999999999999999999999988753           2345688


Q ss_pred             CCeEEEEeeCC--CeEEEEeCCCcEEEEecCCCeeeE-EecC------------------CCCeeEEEeecCCe-EEEEe
Q 010296          305 SEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEESRLV-FRAP------------------ASSLECCCFISNDE-FLSGS  362 (513)
Q Consensus       305 ~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~-~~~~------------------~~~v~~~~~~~~~~-~~~~~  362 (513)
                      ..|.+++|+|+  +.+++++.|+.| +||+++..... +..+                  ...|.+++|+|++. |++++
T Consensus       152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs  230 (902)
T 2oaj_A          152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH  230 (902)
T ss_dssp             CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred             CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence            99999999996  367789999999 99999887663 3333                  36799999999986 88999


Q ss_pred             CCCCEEEEecCCCCeeEE
Q 010296          363 DDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       363 ~dg~i~iwd~~~~~~~~~  380 (513)
                      .||.|++||+.+++++..
T Consensus       231 ~Dg~i~lWd~~~g~~~~~  248 (902)
T 2oaj_A          231 EDNSLVFWDANSGHMIMA  248 (902)
T ss_dssp             TTCCEEEEETTTCCEEEE
T ss_pred             CCCeEEEEECCCCcEEEE
Confidence            999999999999887653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.9e-36  Score=297.76  Aligned_cols=288  Identities=17%  Similarity=0.297  Sum_probs=245.0

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+......+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.++..+..+                   .+|...
T Consensus       146 vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~-------------------~~h~~~  205 (464)
T 3v7d_B          146 VYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF-------------------EGHNST  205 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-------------------CCCSSC
T ss_pred             EEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-------------------CCCCCc
Confidence            56667777888899999999999999988 9999999999999999998877654                   578999


Q ss_pred             EEEEEEc--CCCCEEEEEeCCCcEEEEeCCCcce-----------------------eeeccCcCCCeEEEEEecCCCeE
Q 010296          223 ILALAVS--SDGRYLASGGLDRHIHLWDTRIQEH-----------------------IQAFPGHRGPVSCLTFRQGTSEL  277 (513)
Q Consensus       223 v~~~~~s--~~~~~l~s~~~dg~i~vwd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~l  277 (513)
                      |.+++|+  +++.+|++|+.||.|++||+.++..                       +..+.+|...|.++  ++++++|
T Consensus       206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l  283 (464)
T 3v7d_B          206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIV  283 (464)
T ss_dssp             EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEE
T ss_pred             cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEE
Confidence            9999998  5789999999999999999987653                       45677788888877  5678999


Q ss_pred             EEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecC
Q 010296          278 FSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISN  355 (513)
Q Consensus       278 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~  355 (513)
                      ++++.||.|++||+.+++++..+.+|...|.+++|+|++ .+++++.|+.|++||+.++..+ .+..|...+.++.+++ 
T Consensus       284 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-  362 (464)
T 3v7d_B          284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-  362 (464)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC-
Confidence            999999999999999999999999999999999999987 5669999999999999988776 6678889999999974 


Q ss_pred             CeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC
Q 010296          356 DEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD  435 (513)
Q Consensus       356 ~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  435 (513)
                      ..+++++.||.|++||+.++..........                                      .+..++|+|+++
T Consensus       363 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~  404 (464)
T 3v7d_B          363 KFLVSAAADGSIRGWDANDYSRKFSYHHTN--------------------------------------LSAITTFYVSDN  404 (464)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECTT--------------------------------------CCCEEEEEECSS
T ss_pred             CEEEEEeCCCcEEEEECCCCceeeeecCCC--------------------------------------CccEEEEEeCCC
Confidence            579999999999999999987766654322                                      277889999999


Q ss_pred             EEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          436 LAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       436 ~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      +|++|+ ||.|+|||+.++ +.+... ...+...|.+++|+  +..++++++.+|.+.+|-
T Consensus       405 ~l~~~~-dg~i~iwd~~~g-~~~~~~-~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          405 ILVSGS-ENQFNIYNLRSG-KLVHAN-ILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEEEEE-TTEEEEEETTTC-CEEESC-TTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred             EEEEec-CCeEEEEECCCC-cEEehh-hccCCCcEEEEEec--CCEEEEEEEeCCeEEEEE
Confidence            999998 899999999998 333321 23478999999997  667777768888776663

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=304.14  Aligned_cols=306  Identities=11%  Similarity=0.149  Sum_probs=224.1

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCc------------ccEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQS------------KHIL  224 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~  224 (513)
                      .|.+.|++|+|+|++++||+|+.||.|+||++.++.........        .......+.+|.            ..|+
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~~V~   97 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEEKIN   97 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECCCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccCceE
Confidence            57899999999999999999999999999999877621100000        000011234676            8899


Q ss_pred             EEEEcCCC--CEEEEEeCCCcEEEEeCCCccee---------------------------------------ee-ccCcC
Q 010296          225 ALAVSSDG--RYLASGGLDRHIHLWDTRIQEHI---------------------------------------QA-FPGHR  262 (513)
Q Consensus       225 ~~~~s~~~--~~l~s~~~dg~i~vwd~~~~~~~---------------------------------------~~-~~~~~  262 (513)
                      +++|+|++  .+|++++.|+.|++|++.++...                                       .. +.+|.
T Consensus        98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  177 (447)
T 3dw8_B           98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT  177 (447)
T ss_dssp             EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred             EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence            99999998  79999999999999998764432                                       12 36799


Q ss_pred             CCeEEEEEecCCCeEEEEeCCCcEEEEeCCC-CceeE-------EeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEec
Q 010296          263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAED-RAYIS-------TLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKV  332 (513)
Q Consensus       263 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~  332 (513)
                      ..|.+++|+|++++|++| .|+.|++||+.+ +..+.       .+.+|...|.+++|+|++  .+++++.|+.|++||+
T Consensus       178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence            999999999999999998 799999999984 44444       255789999999999986  5679999999999999


Q ss_pred             CCCee-----eEEecCCC------------CeeEEEeecCCe-EEEEeCCCCEEEEecCC-CCeeEEeecCCCcccCCCC
Q 010296          333 PEESR-----LVFRAPAS------------SLECCCFISNDE-FLSGSDDGSIELWSLLR-KKPVYIVKNAHPLLDGLKN  393 (513)
Q Consensus       333 ~~~~~-----~~~~~~~~------------~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~  393 (513)
                      ++...     ..+..+..            .|.+++|+|++. |++++. +.|+|||+.+ ++++..+..+......+..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~  335 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS  335 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence            98774     45566654            899999999996 567777 9999999997 7777666543211000000


Q ss_pred             cccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee------------
Q 010296          394 FEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL------------  461 (513)
Q Consensus       394 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~------------  461 (513)
                      ...                      ......+..++|+|++++|++|+.||.|+|||+.++.. +...            
T Consensus       336 ~~~----------------------~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~  392 (447)
T 3dw8_B          336 LYE----------------------NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD-ITLEASRENNKPRTVL  392 (447)
T ss_dssp             HHH----------------------TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE-EEEECCSTTCCTTCBC
T ss_pred             ccc----------------------ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc-eeeeeccccccccccc
Confidence            000                      00001144699999999999999999999999988732 2110            


Q ss_pred             ------------------eecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          462 ------------------YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       462 ------------------~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                                        ..+.....|.+++|+|++.+||++ +.+ .+.+|..
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~-~~~-~~~~~~~  444 (447)
T 3dw8_B          393 KPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVA-TTN-NLYIFQD  444 (447)
T ss_dssp             CCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEE-CSS-CEEEEEC
T ss_pred             CCccccccCCcccccccccccccCCceeEEEECCCCCEEEEE-ecc-eeeeecc
Confidence                              011234678999999999999988 555 4777753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-37  Score=291.69  Aligned_cols=253  Identities=15%  Similarity=0.196  Sum_probs=212.1

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC--ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG--KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      .+..+.+|.+.|++++|+|++++|++|+.||.|+||++...  ..+..                   +.+|...|++++|
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~   63 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW   63 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE-------------------ECCCSSCEEEEEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeE-------------------ecCCCCcEEEEEe
Confidence            45678899999999999999999999999999999999743  33332                   3678999999999


Q ss_pred             cCC--CCEEEEEeCCCcEEEEeCCCcc--eeeeccCcCCCeEEEEEecC--CCeEEEEeCCCcEEEEeCCCCc--eeEEe
Q 010296          229 SSD--GRYLASGGLDRHIHLWDTRIQE--HIQAFPGHRGPVSCLTFRQG--TSELFSGSFDRTVKIWNAEDRA--YISTL  300 (513)
Q Consensus       229 s~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~  300 (513)
                      +|+  +.+|++|+.||.|++||+.+++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||+.++.  ....+
T Consensus        64 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  143 (379)
T 3jrp_A           64 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII  143 (379)
T ss_dssp             CCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred             CCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe
Confidence            987  9999999999999999999887  77888889999999999999  9999999999999999998873  34566


Q ss_pred             ecccCCeEEEEeeC-------------CC-eEEEEeCCCcEEEEecCCCee-----eEEecCCCCeeEEEeecC---Ce-
Q 010296          301 FGHQSEVLTIDCLR-------------KE-RVLTVGRDRSMQLWKVPEESR-----LVFRAPASSLECCCFISN---DE-  357 (513)
Q Consensus       301 ~~~~~~v~~~~~~~-------------~~-~~~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~---~~-  357 (513)
                      ..|...|.+++|+|             ++ .+++++.|+.|++||++....     ..+..|...|.+++|+|+   +. 
T Consensus       144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  223 (379)
T 3jrp_A          144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY  223 (379)
T ss_dssp             ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred             cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCe
Confidence            78999999999999             34 667999999999999976542     256678899999999999   65 


Q ss_pred             EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE
Q 010296          358 FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA  437 (513)
Q Consensus       358 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  437 (513)
                      |++++.||.|++||+.++...........                                ..+...|++++|+|++++|
T Consensus       224 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------------------~~~~~~v~~~~~s~~g~~l  271 (379)
T 3jrp_A          224 LASVSQDRTCIIWTQDNEQGPWKKTLLKE--------------------------------EKFPDVLWRASWSLSGNVL  271 (379)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCEEEESSS--------------------------------SCCSSCEEEEEECSSSCCE
T ss_pred             EEEEeCCCEEEEEeCCCCCccceeeeecc--------------------------------ccCCCcEEEEEEcCCCCEE
Confidence            78999999999999988753222111100                                2344559999999999999


Q ss_pred             EEecCCCcEEEEEeCCC
Q 010296          438 ASGAGNGSVRLWAIESE  454 (513)
Q Consensus       438 ~~g~~dg~v~vwd~~~~  454 (513)
                      ++++.||.|+||++...
T Consensus       272 ~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          272 ALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EEEESSSSEEEEEEEET
T ss_pred             EEecCCCcEEEEeCCCC
Confidence            99999999999999843

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.4e-38  Score=291.94  Aligned_cols=247  Identities=18%  Similarity=0.242  Sum_probs=200.3

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC--C
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS--D  231 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~  231 (513)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++......                 .+.+|...|++++|+|  +
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~-----------------~l~gH~~~V~~v~~~~~~~   70 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA-----------------DLRGHEGPVWQVAWAHPMY   70 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEECCGGG
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEE-----------------EEcCCCccEEEEEeCCCCC
Confidence            46689999999999999999999999999999999876432110                 2368999999999986  4


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcc--eeeeccCcCCCeEEEEEecC--CCeEEEEeCCCcEEEEeCCCCce---eEEeeccc
Q 010296          232 GRYLASGGLDRHIHLWDTRIQE--HIQAFPGHRGPVSCLTFRQG--TSELFSGSFDRTVKIWNAEDRAY---ISTLFGHQ  304 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~  304 (513)
                      +++|++|+.|++|++||+.++.  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++|+++++..   ...+.+|.
T Consensus        71 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~  150 (316)
T 3bg1_A           71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT  150 (316)
T ss_dssp             SSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS
T ss_pred             CCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc
Confidence            8999999999999999998873  56678889999999999998  78999999999999999987632   34556788


Q ss_pred             CCeEEEEeeCC------------------CeEEEEeCCCcEEEEecCCCe----eeEEecCCCCeeEEEeecCC-----e
Q 010296          305 SEVLTIDCLRK------------------ERVLTVGRDRSMQLWKVPEES----RLVFRAPASSLECCCFISND-----E  357 (513)
Q Consensus       305 ~~v~~~~~~~~------------------~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~-----~  357 (513)
                      ..|.++.|+|+                  ..|++++.|+.|++||+....    ...+..|...|.+++|+|++     .
T Consensus       151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred             CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence            99999999986                  367799999999999997542    22466788999999999985     4


Q ss_pred             EEEEeCCCCEEEEecCCCCe----eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC
Q 010296          358 FLSGSDDGSIELWSLLRKKP----VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG  433 (513)
Q Consensus       358 ~~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  433 (513)
                      |++++.|++|+||++.+...    ...+                                     ..|...|.+++|+|+
T Consensus       231 las~s~D~~v~iw~~~~~~~~~~~~~~~-------------------------------------~~~~~~v~~v~~sp~  273 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDDASSNTWSPKLL-------------------------------------HKFNDVVWHVSWSIT  273 (316)
T ss_dssp             EEEEETTCEEEEEECSSTTCCCCBCCEE-------------------------------------EECSSCEEEEEECTT
T ss_pred             EEEEcCCCeEEEEEccCccccchhhhhh-------------------------------------hcCCCcEEEEEEcCC
Confidence            88999999999999876311    1111                                     122344999999999


Q ss_pred             CCEEEEecCCCcEEEEEeCCC
Q 010296          434 SDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       434 ~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      +++|++++.||.|+||+....
T Consensus       274 g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          274 ANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             TCCEEEEESSSCEEEEEECTT
T ss_pred             CCEEEEEcCCCeEEEEEECCC
Confidence            999999999999999998643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-36  Score=291.73  Aligned_cols=238  Identities=25%  Similarity=0.435  Sum_probs=207.8

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      ..|++++|+|++++|++|+.|++|+|||+.+++.+..+                   .+|...|++++|+|++.+|++|+
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------~~h~~~v~~~~~~p~~~~l~s~s  184 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL-------------------QGHEQDIYSLDYFPSGDKLVSGS  184 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-------------------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-------------------ccCCCCEEEEEEcCCCCEEEEec
Confidence            45999999999999999999999999999988776644                   68999999999999999999999


Q ss_pred             CCCcEEEEeCCCcceeeeccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCCceeEEe-------ecccCCeEEEE
Q 010296          240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDRAYISTL-------FGHQSEVLTID  311 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~  311 (513)
                      .|++|++||+.+++....+. +...+.+++|+| ++++|++++.|+.|++||+.++..+..+       .+|...|.+++
T Consensus       185 ~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~  263 (393)
T 1erj_A          185 GDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV  263 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred             CCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEE
Confidence            99999999999999887776 667899999999 8999999999999999999999887766       57889999999


Q ss_pred             eeCCC-eEEEEeCCCcEEEEecCCCe-------------eeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCC
Q 010296          312 CLRKE-RVLTVGRDRSMQLWKVPEES-------------RLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKK  376 (513)
Q Consensus       312 ~~~~~-~~~~~~~d~~i~iwd~~~~~-------------~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~  376 (513)
                      |+|++ .+++++.|+.|++||+....             ...+.+|...|.+++|++++. |++|+.|+.|++||+.+++
T Consensus       264 ~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~  343 (393)
T 1erj_A          264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN  343 (393)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence            99988 46689999999999997532             235667888999999999885 7899999999999999999


Q ss_pred             eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec------CCCEEEEecCCCcEEEEE
Q 010296          377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG------GSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~g~~dg~v~vwd  450 (513)
                      ++..+..                                     |...|.+++|++      ++++|++|+.||+|+||+
T Consensus       344 ~~~~l~~-------------------------------------h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          344 PLLMLQG-------------------------------------HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             EEEEEEC-------------------------------------CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             EEEEECC-------------------------------------CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence            8887753                                     334499999886      688999999999999999


Q ss_pred             eCCC
Q 010296          451 IESE  454 (513)
Q Consensus       451 ~~~~  454 (513)
                      +...
T Consensus       387 ~~~~  390 (393)
T 1erj_A          387 YKKI  390 (393)
T ss_dssp             EEEC
T ss_pred             cccc
Confidence            8653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-36  Score=284.59  Aligned_cols=251  Identities=18%  Similarity=0.268  Sum_probs=206.0

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY  234 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  234 (513)
                      ..+|...|++++|+|++++|++|+.|++|+||++..+......                 .+.+|...|.+++|+|++++
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~-----------------~~~~h~~~v~~v~~sp~~~~  119 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVT-----------------TLEGHENEVKSVAWAPSGNL  119 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEE-----------------EECCCSSCEEEEEECTTSSE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEE-----------------EccCCCCCceEEEEeCCCCE
Confidence            4689999999999999999999999999999998876432111                 23689999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCcc---eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc--eeEEeecccCCeEE
Q 010296          235 LASGGLDRHIHLWDTRIQE---HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA--YISTLFGHQSEVLT  309 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~  309 (513)
                      |++|+.|+.|++||+.++.   ++..+.+|...|.+++|+|++.+|++++.|+.|++|++.++.  +...+.+|...|.+
T Consensus       120 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~  199 (345)
T 3fm0_A          120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS  199 (345)
T ss_dssp             EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred             EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEE
Confidence            9999999999999998663   466788899999999999999999999999999999998875  45678899999999


Q ss_pred             EEeeCCC-eEEEEeCCCcEEEEecCCCe---------------ee-EEe-cCCCCeeEEEeecCCe-EEEEeCCCCEEEE
Q 010296          310 IDCLRKE-RVLTVGRDRSMQLWKVPEES---------------RL-VFR-APASSLECCCFISNDE-FLSGSDDGSIELW  370 (513)
Q Consensus       310 ~~~~~~~-~~~~~~~d~~i~iwd~~~~~---------------~~-~~~-~~~~~v~~~~~~~~~~-~~~~~~dg~i~iw  370 (513)
                      ++|+|++ .|++++.|++|++|+.....               .+ .+. .|...|.+++|++++. +++++.|+.|++|
T Consensus       200 l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw  279 (345)
T 3fm0_A          200 LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVF  279 (345)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEE
Confidence            9999988 56689999999999963211               11 222 2677899999999885 8899999999999


Q ss_pred             ecCCCCe----eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCc
Q 010296          371 SLLRKKP----VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGS  445 (513)
Q Consensus       371 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~  445 (513)
                      +......    ...+...                                ....|...|++++|+|++ .+||+|+.||+
T Consensus       280 ~~~~~~~~~~~~~~~~~~--------------------------------~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~  327 (345)
T 3fm0_A          280 QEDPNSDPQQPTFSLTAH--------------------------------LHQAHSQDVNCVAWNPKEPGLLASCSDDGE  327 (345)
T ss_dssp             EECTTSCTTSCCEEEEEE--------------------------------ETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             EeCCCCCcceeeEEEEee--------------------------------ecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence            9876431    1111100                                003456679999999988 59999999999


Q ss_pred             EEEEEeCCC
Q 010296          446 VRLWAIESE  454 (513)
Q Consensus       446 v~vwd~~~~  454 (513)
                      |+||++.+.
T Consensus       328 v~~W~~~~~  336 (345)
T 3fm0_A          328 VAFWKYQRP  336 (345)
T ss_dssp             EEEEEECC-
T ss_pred             EEEEEecCC
Confidence            999999887

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.6e-36  Score=295.51  Aligned_cols=277  Identities=21%  Similarity=0.410  Sum_probs=233.9

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY  234 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  234 (513)
                      ..+|...|+|++|  ++++|++|+.||+|++||+.+++....+                   .+|...|++++|  ++++
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-------------------~~h~~~v~~l~~--~~~~  185 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-------------------TGHTGSVLCLQY--DERV  185 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-------------------CCCSSCEEEEEC--CSSE
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-------------------cCCCCcEEEEEE--CCCE
Confidence            3467788999988  7899999999999999999998877654                   678999999999  6889


Q ss_pred             EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee---EEeecccCCeEEEE
Q 010296          235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI---STLFGHQSEVLTID  311 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~  311 (513)
                      |++|+.||.|++||+.+++.+..+.+|...|.+++|++  .+|++|+.||.|++||+.++..+   ..+.+|...|.++.
T Consensus       186 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  263 (435)
T 1p22_A          186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD  263 (435)
T ss_dssp             EEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEE
Confidence            99999999999999999999999999999999999974  58999999999999999987765   66788999999999


Q ss_pred             eeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccC
Q 010296          312 CLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDG  390 (513)
Q Consensus       312 ~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  390 (513)
                      | ....+++++.|+.|++||+.++..+ .+..|...+.++.+. ...+++|+.||.|++||+.+++++..+..       
T Consensus       264 ~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-------  334 (435)
T 1p22_A          264 F-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLEG-------  334 (435)
T ss_dssp             E-ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECC-------
T ss_pred             e-CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECCCCCEEEEEeC-------
Confidence            9 4557889999999999999988766 567788899999985 45789999999999999999998888753       


Q ss_pred             CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCc--------ceeeee
Q 010296          391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETK--------DIQPLY  462 (513)
Q Consensus       391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~--------~~~~~~  462 (513)
                                                    |...|.+++|  ++.+|++|+.||.|++||+.++..        .+..+ 
T Consensus       335 ------------------------------h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-  381 (435)
T 1p22_A          335 ------------------------------HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-  381 (435)
T ss_dssp             ------------------------------CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-
T ss_pred             ------------------------------CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-
Confidence                                          3344999998  678999999999999999976521        22233 


Q ss_pred             ecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          463 NLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       463 ~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                       ..|.+.|++++|  ++.+|+++ +.||.|++|++.....
T Consensus       382 -~~h~~~v~~l~~--~~~~l~s~-s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          382 -VEHSGRVFRLQF--DEFQIVSS-SHDDTILIWDFLNDPA  417 (435)
T ss_dssp             -CCCSSCCCCEEE--CSSCEEEC-CSSSEEEEEC------
T ss_pred             -cCCCCCeEEEEe--CCCEEEEE-eCCCEEEEEECCCCCC
Confidence             247889999999  78888888 8999999999876643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.3e-37  Score=339.21  Aligned_cols=319  Identities=18%  Similarity=0.274  Sum_probs=263.8

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhc-------------cC--
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLK-------------SH--  207 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-------------~~--  207 (513)
                      +|+.........+.+|.+.|++++|+|++++|++|+.||+|++||+.++.....+........             ..  
T Consensus       727 vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  806 (1249)
T 3sfz_A          727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW  806 (1249)
T ss_dssp             EEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred             EEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence            566677777888899999999999999999999999999999999988765443311000000             00  


Q ss_pred             ---------------------CCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeE
Q 010296          208 ---------------------GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVS  266 (513)
Q Consensus       208 ---------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  266 (513)
                                           ..........+|...|.+++|+|++.++++++.+|.|++|++.++..+..+.+|...|.
T Consensus       807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~  886 (1249)
T 3sfz_A          807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH  886 (1249)
T ss_dssp             CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence                                 00000001237888999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCeEEEEeCCCcEEEEeCC------------------------------------------------------
Q 010296          267 CLTFRQGTSELFSGSFDRTVKIWNAE------------------------------------------------------  292 (513)
Q Consensus       267 ~~~~~~~~~~l~~~~~dg~i~iwd~~------------------------------------------------------  292 (513)
                      +++|+|++++|++++.||.|++|++.                                                      
T Consensus       887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  966 (1249)
T 3sfz_A          887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC  966 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence            99999999999999999999988743                                                      


Q ss_pred             -------------------------CCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCC
Q 010296          293 -------------------------DRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASS  346 (513)
Q Consensus       293 -------------------------~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~  346 (513)
                                               +++.+..+.+|...|.+++|+|++ .+++++.|+.|++|++.++.......+...
T Consensus       967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 1046 (1249)
T 3sfz_A          967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQET 1046 (1249)
T ss_dssp             EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSC
T ss_pred             EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCc
Confidence                                     223334455688899999999987 566888999999999999988888889999


Q ss_pred             eeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEE
Q 010296          347 LECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS  426 (513)
Q Consensus       347 v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~  426 (513)
                      +.++.+++++.+++++.||.|++||+.+++.+..+..                                     |...|+
T Consensus      1047 v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-------------------------------------~~~~v~ 1089 (1249)
T 3sfz_A         1047 VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC-------------------------------------HQGTVL 1089 (1249)
T ss_dssp             EEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC-------------------------------------CSSCCC
T ss_pred             EEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc-------------------------------------cCCcEE
Confidence            9999999999999999999999999999988877753                                     333499


Q ss_pred             EEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          427 SVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       427 ~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      +++|+|++++|++++.||.|++|++.++ ..+..+..  |.+.|++++|+|+|++|+++ +.||.|++|++..+..
T Consensus      1090 ~~~~s~d~~~l~s~s~d~~v~iwd~~~~-~~~~~l~~--h~~~v~~~~~s~dg~~lat~-~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A         1090 SCAISSDATKFSSTSADKTAKIWSFDLL-SPLHELKG--HNGCVRCSAFSLDGILLATG-DDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp             CEEECSSSSSCEEECCSSCCCEECSSSS-SCSBCCCC--CSSCEEEEEECSSSSEEEEE-ETTSCCCEEESSSSCC
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCc-ceeeeecc--CCCcEEEEEECCCCCEEEEE-eCCCEEEEEECCCCce
Confidence            9999999999999999999999999887 34444433  78899999999999999999 8999999999887653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.9e-36  Score=308.72  Aligned_cols=297  Identities=18%  Similarity=0.238  Sum_probs=232.5

Q ss_pred             ccCCCcccchhhhhccCC---CeEEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCC-
Q 010296          143 VQKPEATDEFRVLLKHRQ---SVTAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT-  217 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~---~V~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  217 (513)
                      +|+.........+.+|..   .|++++|+|+ +++|++++.||.|++||+.+++.+..+                  .. 
T Consensus       187 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------------------~~~  248 (615)
T 1pgu_A          187 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI------------------EDD  248 (615)
T ss_dssp             EEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC------------------CBT
T ss_pred             EEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe------------------ccc
Confidence            566677777888899999   9999999999 999999999999999999988876643                  12 


Q ss_pred             --CCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCc----CCCeEEEEEecCCCeEEEEeCCCcEEEEeC
Q 010296          218 --KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGH----RGPVSCLTFRQGTSELFSGSFDRTVKIWNA  291 (513)
Q Consensus       218 --~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  291 (513)
                        .|...|.+++|+ ++.+|++++.|+.|++||+.+++.+..+..+    ...+.++.|. ++.++++++.+|.|++||+
T Consensus       249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~  326 (615)
T 1pgu_A          249 QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL  326 (615)
T ss_dssp             TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred             ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence              788999999999 9999999999999999999999998888766    4678888886 8899999999999999999


Q ss_pred             CCCceeEEeecccCCeEEEEe---------------------------------eCCCeEEEEeCCCcEEEEecC-----
Q 010296          292 EDRAYISTLFGHQSEVLTIDC---------------------------------LRKERVLTVGRDRSMQLWKVP-----  333 (513)
Q Consensus       292 ~~~~~~~~~~~~~~~v~~~~~---------------------------------~~~~~~~~~~~d~~i~iwd~~-----  333 (513)
                      .+++.+..+.+|...|.+++|                                 .++..+++++.++.|++|++.     
T Consensus       327 ~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  406 (615)
T 1pgu_A          327 GHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFG  406 (615)
T ss_dssp             TEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECS
T ss_pred             CCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCccc
Confidence            988887777766666655555                                 223345555555555555543     


Q ss_pred             ---------------------------------------------------------------------CCee--eEEec
Q 010296          334 ---------------------------------------------------------------------EESR--LVFRA  342 (513)
Q Consensus       334 ---------------------------------------------------------------------~~~~--~~~~~  342 (513)
                                                                                           +...  ..+..
T Consensus       407 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~  486 (615)
T 1pgu_A          407 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP  486 (615)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC
T ss_pred             CCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCC
Confidence                                                                                 2211  12233


Q ss_pred             CCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCC
Q 010296          343 PASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSA  421 (513)
Q Consensus       343 ~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  421 (513)
                      |...+.+++|+|++. |++++.||.|++|++.+++++..+..                                    .|
T Consensus       487 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------------------------------~h  530 (615)
T 1pgu_A          487 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA------------------------------------FR  530 (615)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC------------------------------------CC
T ss_pred             ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec------------------------------------CC
Confidence            455666777777664 55666777777777766666554421                                    15


Q ss_pred             cceEEEEEEec----------CCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCc
Q 010296          422 YSWVSSVTVCG----------GSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPR  491 (513)
Q Consensus       422 ~~~i~~~~~s~----------~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~  491 (513)
                      ...|++++|+|          ++++|++++.||.|+||++.++...+..+.  .|...|++++|+|+++ |+++ +.||.
T Consensus       531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~-~~d~~  606 (615)
T 1pgu_A          531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSS-GADAC  606 (615)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEE-ETTSC
T ss_pred             CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEe-cCCce
Confidence            55699999999          999999999999999999998744444443  3789999999999999 8888 99999


Q ss_pred             ccccccCC
Q 010296          492 LGRWGHLP  499 (513)
Q Consensus       492 v~~W~~~~  499 (513)
                      |++|++..
T Consensus       607 v~iw~~~~  614 (615)
T 1pgu_A          607 IKRWNVVL  614 (615)
T ss_dssp             EEEEEEC-
T ss_pred             EEEEeeec
Confidence            99999764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=318.72  Aligned_cols=206  Identities=9%  Similarity=0.134  Sum_probs=164.0

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+......... ..|..+|++|+|+| +++|++++.|++|+|||+.+++.+..+                    .|...
T Consensus        43 lw~~~~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~--------------------~~~~~  100 (902)
T 2oaj_A           43 IYGQQQVEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV--------------------FVPGK  100 (902)
T ss_dssp             EECSTTCEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE--------------------ECSSC
T ss_pred             EEeCCCcEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE--------------------cCCCC
Confidence            344444333333 35889999999999 889999999999999999998876654                    35578


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCccee-----------eeccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEe
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-----------QAFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWN  290 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd  290 (513)
                      |++++|+|++++|++|+.||.|++||+.++++.           ..+.+|.+.|.+++|+|+ +..|++|+.||.| +||
T Consensus       101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd  179 (902)
T 2oaj_A          101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS  179 (902)
T ss_dssp             EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence            999999999999999999999999999988754           345679999999999996 4689999999999 999


Q ss_pred             CCCCceeEEeecc------------------cCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEe------c---
Q 010296          291 AEDRAYISTLFGH------------------QSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFR------A---  342 (513)
Q Consensus       291 ~~~~~~~~~~~~~------------------~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~------~---  342 (513)
                      +++++++..+..|                  ...|.+++|+|++ .|++++.|+.|++||+++++.+...      .   
T Consensus       180 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~  259 (902)
T 2oaj_A          180 LVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVP  259 (902)
T ss_dssp             TTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSC
T ss_pred             CCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCC
Confidence            9999988877655                  4679999999998 4669999999999999887765421      1   


Q ss_pred             ----------CCCCeeEEEeec----CC-e-EEEEeCC-----CCEEEEe
Q 010296          343 ----------PASSLECCCFIS----ND-E-FLSGSDD-----GSIELWS  371 (513)
Q Consensus       343 ----------~~~~v~~~~~~~----~~-~-~~~~~~d-----g~i~iwd  371 (513)
                                +...|.+++|++    ++ . +++|+.+     ..+.+|+
T Consensus       260 ~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~  309 (902)
T 2oaj_A          260 QPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID  309 (902)
T ss_dssp             CTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred             CCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence                      234688899853    32 3 4566554     2666776

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-35  Score=290.30  Aligned_cols=284  Identities=23%  Similarity=0.410  Sum_probs=240.8

Q ss_pred             cchhhhhccCCCe-EEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          150 DEFRVLLKHRQSV-TAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       150 ~~~~~~~~h~~~V-~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ...+.+.+|.+.| +|  +++++++|++|+.||+|++||+.+++.+..+                   .+|...|++++|
T Consensus       109 ~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-------------------~~h~~~v~~~~~  167 (445)
T 2ovr_B          109 KSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-------------------VGHTGGVWSSQM  167 (445)
T ss_dssp             CCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEEC-------------------CCCSSCEEEEEE
T ss_pred             ceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEE-------------------cCCCCCEEEEEe
Confidence            3445688999875 55  4456899999999999999999998877654                   689999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      +  +.+|++|+.||.|++||+.+++.+..+.+|...|.++.|+  +..|++++.||.|++||+.+++.+..+.+|...|.
T Consensus       168 ~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~  243 (445)
T 2ovr_B          168 R--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR  243 (445)
T ss_dssp             E--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred             c--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEE
Confidence            8  6799999999999999999999999999999999999996  56799999999999999999999999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296          309 TIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPL  387 (513)
Q Consensus       309 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (513)
                      ++.+ ....+++++.|+.|++||+.+.... .+..|...+.++.+ ....+++++.||.|++||+.+++++..+..+   
T Consensus       244 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---  318 (445)
T 2ovr_B          244 CVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH---  318 (445)
T ss_dssp             EEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCC---
T ss_pred             EEEE-CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC---
Confidence            9999 4557889999999999999988766 56678889999999 3446889999999999999999988877532   


Q ss_pred             ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee-cCc
Q 010296          388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN-LPL  466 (513)
Q Consensus       388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~-~~~  466 (513)
                                                        ...+.++.++  +++|++|+.||.|++||+.++ ..+..+.. ..|
T Consensus       319 ----------------------------------~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~  361 (445)
T 2ovr_B          319 ----------------------------------QSLTSGMELK--DNILVSGNADSTVKIWDIKTG-QCLQTLQGPNKH  361 (445)
T ss_dssp             ----------------------------------CSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-CEEEEECSTTSC
T ss_pred             ----------------------------------cccEEEEEEe--CCEEEEEeCCCeEEEEECCCC-cEEEEEccCCCC
Confidence                                              2337777765  569999999999999999887 33444432 237


Q ss_pred             ccEEEEEEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296          467 VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       467 ~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                      ...|++++|+  +.+|+++ +.||.|++|++..+...
T Consensus       362 ~~~v~~~~~~--~~~l~s~-~~dg~v~iwd~~~~~~~  395 (445)
T 2ovr_B          362 QSAVTCLQFN--KNFVITS-SDDGTVKLWDLKTGEFI  395 (445)
T ss_dssp             SSCEEEEEEC--SSEEEEE-ETTSEEEEEETTTCCEE
T ss_pred             CCCEEEEEEC--CCEEEEE-eCCCeEEEEECCCCcee
Confidence            7889999995  5788888 89999999998877543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.7e-36  Score=277.37  Aligned_cols=249  Identities=19%  Similarity=0.341  Sum_probs=212.9

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      .+.+|...|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   97 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG   97 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEe
Q 010296          295 AYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWS  371 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd  371 (513)
                      +++..+.+|...|.++.|+|++ .+++++.|+.|++||+.++... .+..|...+.+++|+|++. |++++.||.|++||
T Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  177 (312)
T 4ery_A           98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  177 (312)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            9999999999999999999987 5668999999999999987765 5667888999999999985 78999999999999


Q ss_pred             cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      +.+++.+..+...+                                    ...+..++|+|++++|++++.||.|++||+
T Consensus       178 ~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  221 (312)
T 4ery_A          178 TASGQCLKTLIDDD------------------------------------NPPVSFVKFSPNGKYILAATLDNTLKLWDY  221 (312)
T ss_dssp             TTTCCEEEEECCSS------------------------------------CCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             CCCCceeeEEeccC------------------------------------CCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            99998887764322                                    233899999999999999999999999999


Q ss_pred             CCCCcceeeeeecCcccEEEEEEee-cCCCEEEEEecCCCcccccccCCCc
Q 010296          452 ESETKDIQPLYNLPLVGFVNSLAFA-KSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      .++ ..+..+.............|+ +++.+|+++ +.||.|++|++....
T Consensus       222 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          222 SKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSG-SEDNLVYIWNLQTKE  270 (312)
T ss_dssp             TTT-EEEEEECSSCCSSSCCCEEEECSSSCEEEEC-CTTSCEEEEETTTCC
T ss_pred             CCC-cEEEEEEecCCceEEEEEEEEeCCCcEEEEE-CCCCEEEEEECCCch
Confidence            887 333333332111112223344 678888888 999999999987654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.3e-37  Score=286.62  Aligned_cols=245  Identities=21%  Similarity=0.307  Sum_probs=200.3

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc--eeeeccCcCCCeEEEEEec--CCCeEEEEeCCCcEEEEeC
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE--HIQAFPGHRGPVSCLTFRQ--GTSELFSGSFDRTVKIWNA  291 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~  291 (513)
                      +.+|...|++++|+|+|++||+|+.|++|+|||+.++.  .+..+.+|...|++++|++  ++++|++|+.|++|++||+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~   88 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE   88 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence            46899999999999999999999999999999998764  4678899999999999976  4889999999999999999


Q ss_pred             CCCc--eeEEeecccCCeEEEEeeCC--C-eEEEEeCCCcEEEEecCCCee----eEEecCCCCeeEEEeecC-------
Q 010296          292 EDRA--YISTLFGHQSEVLTIDCLRK--E-RVLTVGRDRSMQLWKVPEESR----LVFRAPASSLECCCFISN-------  355 (513)
Q Consensus       292 ~~~~--~~~~~~~~~~~v~~~~~~~~--~-~~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~~~~~~~-------  355 (513)
                      +++.  .+..+.+|...|.+++|+|+  + .+++++.|+.|++|++.....    ..+..|...+.+++|+|+       
T Consensus        89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  168 (316)
T 3bg1_A           89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI  168 (316)
T ss_dssp             SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred             CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence            8874  56677889999999999996  4 577899999999999987632    234567778999999986       


Q ss_pred             -----------CeEEEEeCCCCEEEEecCCCC---eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCC
Q 010296          356 -----------DEFLSGSDDGSIELWSLLRKK---PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSA  421 (513)
Q Consensus       356 -----------~~~~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  421 (513)
                                 ..|++|+.|++|+|||+....   ++..+                                     ..|
T Consensus       169 ~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-------------------------------------~~h  211 (316)
T 3bg1_A          169 DHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-------------------------------------EAH  211 (316)
T ss_dssp             --CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-------------------------------------BCC
T ss_pred             ccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-------------------------------------ccC
Confidence                       258899999999999997553   22222                                     345


Q ss_pred             cceEEEEEEecCC----CEEEEecCCCcEEEEEeCCCC---cceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccc
Q 010296          422 YSWVSSVTVCGGS----DLAASGAGNGSVRLWAIESET---KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGR  494 (513)
Q Consensus       422 ~~~i~~~~~s~~~----~~l~~g~~dg~v~vwd~~~~~---~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~  494 (513)
                      ..+|.+++|+|++    .+|++|+.||+|+||++.+..   .....+..  |...|.+++|+|++++|+++ +.|+.|++
T Consensus       212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~-~~D~~v~l  288 (316)
T 3bg1_A          212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVS-GGDNKVTL  288 (316)
T ss_dssp             SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEE-ESSSCEEE
T ss_pred             CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEE-cCCCeEEE
Confidence            5669999999986    899999999999999997631   11222332  67889999999999999999 89999999


Q ss_pred             cccCCC
Q 010296          495 WGHLPA  500 (513)
Q Consensus       495 W~~~~~  500 (513)
                      |+....
T Consensus       289 w~~~~~  294 (316)
T 3bg1_A          289 WKESVD  294 (316)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            987543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-37  Score=306.27  Aligned_cols=301  Identities=10%  Similarity=0.008  Sum_probs=221.3

Q ss_pred             hhhhccCCCeEEEEECCC------CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296          153 RVLLKHRQSVTAVALSED------DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL  226 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~------~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (513)
                      ..+.+|.+.|++|+|+|+      +.+||+|+.||+|+||++.++......        ......+...+.+|...|+++
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~--------~~~~~~p~~~l~~h~~~v~sv  272 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV--------FKMCEKPSLTLSLADSLITTF  272 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE--------EECCCSCSEEECCTTTCEEEE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc--------ceeecCceEEEEcCCCCEEEE
Confidence            346678999999999997      579999999999999999876532100        000011222356788999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCcc-eeeeccCcCCCeEEE--EEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          227 AVSSDGRYLASGGLDRHIHLWDTRIQE-HIQAFPGHRGPVSCL--TFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      +|+++ ..|++|+.||+|++||+.++. +...+.+|...|.++  +|+|++ .+|++++.|++|+|||+++++++..+.+
T Consensus       273 ~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~  351 (524)
T 2j04_B          273 DFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS  351 (524)
T ss_dssp             EESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE
T ss_pred             EecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc
Confidence            99986 489999999999999999764 455688999999999  568887 8899999999999999999888777776


Q ss_pred             ccC--CeEEEEeeCCC-eEEEEeCCCcEEEEecCCCee-eEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe
Q 010296          303 HQS--EVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESR-LVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       303 ~~~--~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~  377 (513)
                      |..  .|.+++|+|++ .+++++.|++|++||++.... ..+.+|...|.+++|+|++. |++|+.||+|+||++... .
T Consensus       352 ~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~  430 (524)
T 2j04_B          352 RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-L  430 (524)
T ss_dssp             ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-T
T ss_pred             ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-h
Confidence            654  58899999977 566888999999999998765 46778999999999999986 889999999999997543 1


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcc
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKD  457 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~  457 (513)
                      +........                                ..+...|.+++|+|++..+.. ..  .+++|........
T Consensus       431 ~~~~~~~~~--------------------------------~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~  475 (524)
T 2j04_B          431 LHGIKNSSA--------------------------------TQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVS  475 (524)
T ss_dssp             TTCC--------------------------------------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-------
T ss_pred             ccccccCcc--------------------------------ceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcc
Confidence            111000000                                011123789999999985532 22  2334443311123


Q ss_pred             eeeeeecCcccEEEEEEeecCCC---EEEEEecCCCcccccccCCCc
Q 010296          458 IQPLYNLPLVGFVNSLAFAKSGQ---FLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       458 ~~~~~~~~~~~~v~~v~~sp~~~---~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      +..+.  .|...|++|+|+|+++   +||+| +.+|.|+||++....
T Consensus       476 ~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg-~~~g~vrlw~l~~~~  519 (524)
T 2j04_B          476 KAKID--AHGINITCTKWNETSAGGKCYAFS-NSAGLLTLEYLSLEH  519 (524)
T ss_dssp             --------CCCSCCCEEECCSTTTTTEEEEE-CTTSEEEEEECSCC-
T ss_pred             eeeec--CCCceEEEEECCCCCCccHHHHhh-ccCceEEEEEccccc
Confidence            33343  3788999999999965   78887 899999999976553

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.1e-36  Score=290.47  Aligned_cols=288  Identities=16%  Similarity=0.216  Sum_probs=235.4

Q ss_pred             CCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCEEEE
Q 010296          160 QSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRYLAS  237 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s  237 (513)
                      .....++++|+...++ +++.||.|+||++........               ....+.+|...|++++|+| ++.+|++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s   99 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS   99 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence            4456789999876554 578899999999965432210               1123568999999999999 9999999


Q ss_pred             EeCCCcEEEEeCCCc-------ceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEe--ecccCCe
Q 010296          238 GGLDRHIHLWDTRIQ-------EHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTL--FGHQSEV  307 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v  307 (513)
                      |+.||.|+||++.++       +.+..+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+  ..|...|
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  179 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI  179 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence            999999999999987       5678888999999999999998 68999999999999999999999988  7899999


Q ss_pred             EEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEE--ecCCCC-eeEEEeecCCeEE-EE---eCCCCEEEEecCCCCe-e
Q 010296          308 LTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVF--RAPASS-LECCCFISNDEFL-SG---SDDGSIELWSLLRKKP-V  378 (513)
Q Consensus       308 ~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~-v~~~~~~~~~~~~-~~---~~dg~i~iwd~~~~~~-~  378 (513)
                      .+++|+|++ .+++++.|+.|++||++++.....  ..|... +.++.|+|++.++ +|   +.++.|++||+.+++. +
T Consensus       180 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~  259 (402)
T 2aq5_A          180 YSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL  259 (402)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS
T ss_pred             EEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc
Confidence            999999987 566899999999999998877643  455554 8999999999854 56   5899999999988764 3


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE-EecCCCcEEEEEeCCCCcc
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA-SGAGNGSVRLWAIESETKD  457 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~g~~dg~v~vwd~~~~~~~  457 (513)
                      .....                                    .+...+.+++|+|++++|+ +|+.||.|++|++.++...
T Consensus       260 ~~~~~------------------------------------~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~  303 (402)
T 2aq5_A          260 SLQEL------------------------------------DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF  303 (402)
T ss_dssp             EEEEC------------------------------------CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC
T ss_pred             eEEec------------------------------------cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc
Confidence            33321                                    1223389999999999986 5668999999999988444


Q ss_pred             eeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          458 IQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       458 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      +..+..+.+..+|.+++|+|++.++++   .++.+++|++..+.
T Consensus       304 ~~~l~~~~~~~~v~~~~~sp~~~~~~s---~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          304 LHYLSMFSSKESQRGMGYMPKRGLEVN---KCEIARFYKLHERK  344 (402)
T ss_dssp             EEEEEEECCSSCCSEEEECCGGGSCGG---GTEEEEEEEEETTE
T ss_pred             eEeecccccCCcccceEEeccccccee---cceeEEEEEcCCCc
Confidence            666666667799999999999998764   35599999987754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.3e-36  Score=283.41  Aligned_cols=294  Identities=14%  Similarity=0.182  Sum_probs=214.6

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC--
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS--  230 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--  230 (513)
                      ..+.+|.+.|++|+|+|++++|++|+.||.|+||++.++.....+               ...+.+|...|++++|+|  
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~   69 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASPE   69 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCGG
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCCC
Confidence            456799999999999999999999999999999999876432111               012357899999999999  


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCc---------ceeeeccCcCCCeEEEEEecC--CCeEEEEeCCCcEEEEeCCCCceeEE
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQ---------EHIQAFPGHRGPVSCLTFRQG--TSELFSGSFDRTVKIWNAEDRAYIST  299 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~  299 (513)
                      ++.+|++|+.||.|++||+.++         +.+..+..|...|.+++|+|+  +.+|++++.||.|++||+++++.+..
T Consensus        70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred             CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence            6999999999999999999877         557788889999999999999  99999999999999999998775543


Q ss_pred             ee-------------cccCCeEEEEeeCC---C-eEEEEeCCCcEEEEecCCCee---eEEecCCCCeeEEEeecCC---
Q 010296          300 LF-------------GHQSEVLTIDCLRK---E-RVLTVGRDRSMQLWKVPEESR---LVFRAPASSLECCCFISND---  356 (513)
Q Consensus       300 ~~-------------~~~~~v~~~~~~~~---~-~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~---  356 (513)
                      +.             .|...+.++.|+|+   + .+++++.++.+.+|+......   ..+..|...|.+++|+|++   
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~  229 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW  229 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence            32             57788999999995   4 667899999998888777654   2456788899999999997   


Q ss_pred             --eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC
Q 010296          357 --EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS  434 (513)
Q Consensus       357 --~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  434 (513)
                        .|++++.||.|++||+..+..........                                     ..+....+++..
T Consensus       230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~  272 (351)
T 3f3f_A          230 YQLIATGCKDGRIRIFKITEKLSPLASEESL-------------------------------------TNSNMFDNSADV  272 (351)
T ss_dssp             SEEEEEEETTSCEEEEEEEECC----------------------------------------------------------
T ss_pred             ceEEEEEcCCCeEEEEeCCCCcCccccCCcc-------------------------------------cceeccCCCccc
Confidence              48899999999999998765443322111                                     012223333333


Q ss_pred             CEEEEec----CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          435 DLAASGA----GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       435 ~~l~~g~----~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      ..++.+.    ....+.+|+.... ..+..+.  .|...|++++|+|++++|+++ +.||.|++|++..+..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~h~~~v~~~~~s~~~~~l~s~-~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          273 DMDAQGRSDSNTEEKAELQSNLQV-ELLSEHD--DHNGEVWSVSWNLTGTILSSA-GDDGKVRLWKATYSNE  340 (351)
T ss_dssp             ------------------CCSEEE-EEEEEEC--TTSSCEEEEEECSSSCCEEEE-ETTSCEEEEEECTTSC
T ss_pred             ccccccccccccceeeeecccccc-cEEEEEe--cccccEEEEEEcCCCCEEEEe-cCCCcEEEEecCcCcc
Confidence            3333333    3344455544332 2222222  378899999999999999999 8999999999987654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.8e-36  Score=315.31  Aligned_cols=326  Identities=18%  Similarity=0.242  Sum_probs=257.2

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+......+..+.+|.++|++++|+|++++|++|+.||.|+||++.+++.+..+                   .+|...
T Consensus        39 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-------------------~~~~~~   99 (814)
T 3mkq_A           39 IWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-------------------EAHPDY   99 (814)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-------------------ECCSSC
T ss_pred             EEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-------------------ecCCCC
Confidence            5666777788889999999999999999999999999999999999998877654                   578999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCc-ceeeeccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQ-EHIQAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      |++++|+|++++|++++.||.|++|++.++ .....+.+|...|.+++|+| ++..|++++.||.|++||+.++.....+
T Consensus       100 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  179 (814)
T 3mkq_A          100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL  179 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred             EEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE
Confidence            999999999999999999999999999887 67788889999999999999 8889999999999999999988877777


Q ss_pred             eccc-CCeEEEEeeC--CC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296          301 FGHQ-SEVLTIDCLR--KE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       301 ~~~~-~~v~~~~~~~--~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~  374 (513)
                      ..+. ..+.+++|+|  ++ .+++++.++.|++|++.++... .+..|...+.+++|+|++. +++++.||.|++||+.+
T Consensus       180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            6555 8899999998  66 5668889999999999988766 5667888999999999985 78999999999999999


Q ss_pred             CCeeEEeecCCCcccCCCCcccCcCc----------cccccC----------CCCC------------------------
Q 010296          375 KKPVYIVKNAHPLLDGLKNFEQDEGK----------ISNGHS----------ENGN------------------------  410 (513)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~----------~~~~------------------------  410 (513)
                      ++.+..+.........+. +.+++..          +..+..          +.+.                        
T Consensus       260 ~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  338 (814)
T 3mkq_A          260 YKVEKTLNVGLERSWCIA-THPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEE  338 (814)
T ss_dssp             CSEEEEECCSSSSEEEEE-ECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCC
T ss_pred             CcEEEEeecCCCcEEEEE-EccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccc
Confidence            988887765432221111 1111110          000000          0000                        


Q ss_pred             ------CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEE
Q 010296          411 ------LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIA  484 (513)
Q Consensus       411 ------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~  484 (513)
                            ..........+...+.+++|+|+|++|++++ +|.+.+|++...    ..    .+.+.|.+++|+|++++|++
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~----~~----~~~~~i~~~~~spdg~~la~  409 (814)
T 3mkq_A          339 VEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW----RN----KAFGKCQDFVWGPDSNSYAL  409 (814)
T ss_dssp             CCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT----EE----EEEEECSEEEECTTSSCEEE
T ss_pred             cccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccc----cc----cCCCceEEEEEeCCCCeEEE
Confidence                  0000000123344689999999999999998 899999997543    11    13466888999999998888


Q ss_pred             EecCCCcccccccC
Q 010296          485 GVGQEPRLGRWGHL  498 (513)
Q Consensus       485 ~~~~dg~v~~W~~~  498 (513)
                      + +.+|.|++|+..
T Consensus       410 ~-~~~g~v~l~~~~  422 (814)
T 3mkq_A          410 I-DETGQIKYYKNF  422 (814)
T ss_dssp             E-CTTCCEEEEETT
T ss_pred             E-eCCCcEEEEECC
Confidence            8 788889888644

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.2e-36  Score=307.35  Aligned_cols=265  Identities=29%  Similarity=0.446  Sum_probs=218.7

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ..+.+.+|...|++++|+|++++|++|+.||+|+|||+.++.....+                   .+|...|++++|+|
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~-------------------~~h~~~v~~~~~s~  482 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF-------------------VGHTKDVLSVAFSL  482 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------------------ECCSSCEEEEEECT
T ss_pred             ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE-------------------eCCCCCEEEEEEeC
Confidence            34568899999999999999999999999999999999998776644                   68999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeee---ccCcCCCeEEEEEecCC--CeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQA---FPGHRGPVSCLTFRQGT--SELFSGSFDRTVKIWNAEDRAYISTLFGHQS  305 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  305 (513)
                      ++++|++|+.|++|++||+........   ..+|...|.+++|+|++  ..|++++.|++|++||++++++...+.+|..
T Consensus       483 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~  562 (694)
T 3dm0_A          483 DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG  562 (694)
T ss_dssp             TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC
Confidence            999999999999999999865543322   24688999999999987  5799999999999999999999999999999


Q ss_pred             CeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296          306 EVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       306 ~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                      .|.+++|+|++. +++++.|+.|++||+.++..+....+...+.+++|+|++.+++++.++.|+|||+.++..+..+...
T Consensus       563 ~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~  642 (694)
T 3dm0_A          563 YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD  642 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC
T ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccc
Confidence            999999999885 5589999999999999998876666778899999999999887788888999999999988877643


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                      .........             ..+     ......+...+++++|+|+|++|++|+.||.|+||++.
T Consensus       643 ~~~~~~~~~-------------~~~-----~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          643 LKAEAEKAD-------------NSG-----PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CC----------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccccccccc-------------ccc-----cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            221100000             000     00001122348999999999999999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-35  Score=283.77  Aligned_cols=257  Identities=20%  Similarity=0.291  Sum_probs=219.5

Q ss_pred             ccCCCcccchhhhhc-cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          143 VQKPEATDEFRVLLK-HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~-h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      +|+.........+.. |...|++++|+|++++|++|+.||.|++|++.+++.+..+                   .+|..
T Consensus       117 lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------~~~~~  177 (401)
T 4aez_A          117 VWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-------------------AGHQA  177 (401)
T ss_dssp             EEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-------------------CCCSS
T ss_pred             EeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-------------------cCCCC
Confidence            455555555555544 8999999999999999999999999999999998877654                   57899


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      .|.+++|+  +.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+
T Consensus       178 ~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  255 (401)
T 4aez_A          178 RVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK  255 (401)
T ss_dssp             CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE
T ss_pred             ceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe
Confidence            99999995  6799999999999999998 56678888899999999999999999999999999999999999999999


Q ss_pred             ecccCCeEEEEeeCCC-eEE-EEe--CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEE--EeCCCCEEEEecC
Q 010296          301 FGHQSEVLTIDCLRKE-RVL-TVG--RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLS--GSDDGSIELWSLL  373 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~-~~~-~~~--~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~--~~~dg~i~iwd~~  373 (513)
                      ..|...|.+++|+|++ .++ +++  .|+.|++||+.++.......+...+.+++|+|++. +++  |+.+|.|++|++.
T Consensus       256 ~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~  335 (401)
T 4aez_A          256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS  335 (401)
T ss_dssp             CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred             cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence            9999999999999965 555 443  69999999999988887667888999999999986 555  4489999999999


Q ss_pred             CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296          374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~  453 (513)
                      ++........                                   ..|...|.+++|+|++++|++++.||.|++|++.+
T Consensus       336 ~~~~~~~~~~-----------------------------------~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          336 SSGLTKQVDI-----------------------------------PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             TTEEEEEEEE-----------------------------------ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             CccceeEEEe-----------------------------------cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            8766554431                                   23344599999999999999999999999999998


Q ss_pred             CC
Q 010296          454 ET  455 (513)
Q Consensus       454 ~~  455 (513)
                      +.
T Consensus       381 ~~  382 (401)
T 4aez_A          381 GD  382 (401)
T ss_dssp             --
T ss_pred             Cc
Confidence            73

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-35  Score=280.02  Aligned_cols=252  Identities=19%  Similarity=0.340  Sum_probs=212.9

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CcceeeeccCcCCCeEEEEEecC--CCeEEEEeCCCcEEEEe
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR--IQEHIQAFPGHRGPVSCLTFRQG--TSELFSGSFDRTVKIWN  290 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd  290 (513)
                      .+.+|...|++++|+|++++|++|+.||.|+||++.  +++.+..+.+|...|++++|+++  +.+|++++.||.|++||
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   85 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   85 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence            457899999999999999999999999999999998  66778889999999999999977  89999999999999999


Q ss_pred             CCCCc--eeEEeecccCCeEEEEeeCC--C-eEEEEeCCCcEEEEecCCCe---eeEEecCCCCeeEEEeec--------
Q 010296          291 AEDRA--YISTLFGHQSEVLTIDCLRK--E-RVLTVGRDRSMQLWKVPEES---RLVFRAPASSLECCCFIS--------  354 (513)
Q Consensus       291 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~--------  354 (513)
                      +.+++  .+..+..|...|.+++|+|+  + .+++++.|+.|++||+....   ...+..|...+.+++|+|        
T Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  165 (379)
T 3jrp_A           86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  165 (379)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC------
T ss_pred             cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc
Confidence            99987  67778889999999999997  5 56799999999999998763   346678889999999999        


Q ss_pred             -----CC-eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296          355 -----ND-EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV  428 (513)
Q Consensus       355 -----~~-~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  428 (513)
                           ++ .+++++.||.|++||++++.....+....                                 ..|...|+++
T Consensus       166 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------------------------~~h~~~v~~~  212 (379)
T 3jrp_A          166 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL---------------------------------EGHSDWVRDV  212 (379)
T ss_dssp             ----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE---------------------------------CCCSSCEEEE
T ss_pred             ccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE---------------------------------ecccCcEeEE
Confidence                 35 58899999999999998776433221100                                 3344559999


Q ss_pred             EEecC---CCEEEEecCCCcEEEEEeCCCCcce--eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          429 TVCGG---SDLAASGAGNGSVRLWAIESETKDI--QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       429 ~~s~~---~~~l~~g~~dg~v~vwd~~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      +|+|+   +.+|++++.||.|+||++.++....  ..+....+...|++++|+|++++|+++ +.||.|++|++...
T Consensus       213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS-GGDNKVTLWKENLE  288 (379)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE-ESSSSEEEEEEEET
T ss_pred             EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe-cCCCcEEEEeCCCC
Confidence            99999   8999999999999999998863222  222223378889999999999999999 78999999998743

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.3e-35  Score=276.23  Aligned_cols=292  Identities=10%  Similarity=0.103  Sum_probs=217.1

Q ss_pred             CCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE
Q 010296          146 PEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA  225 (513)
Q Consensus       146 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (513)
                      .....++..+.+|...|++++|+|+|++|++|+.++ ++||++.++......                     +...+..
T Consensus         6 ~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~   63 (355)
T 3vu4_A            6 MITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSK   63 (355)
T ss_dssp             -------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCE
T ss_pred             ccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEE
Confidence            334455566789999999999999999999998775 789998876554321                     1224778


Q ss_pred             EEEcCCCCEE-EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-ceeEEeecc
Q 010296          226 LAVSSDGRYL-ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-AYISTLFGH  303 (513)
Q Consensus       226 ~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~  303 (513)
                      +++.++++.+ ++++.+++|++||+.+++.+..+. |...|.+++|+++.  ++++ .++.|++||+.++ +.+..+.. 
T Consensus        64 ~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-  138 (355)
T 3vu4_A           64 VRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-  138 (355)
T ss_dssp             EEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-
T ss_pred             EEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-
Confidence            8899988877 567778999999999999998887 67799999998764  4444 4789999999988 66666654 


Q ss_pred             cCCeEEEEeeCCCeEEE--EeCCCcEEEEecCCCe-----------------eeEEecCCCCeeEEEeecCCe-EEEEeC
Q 010296          304 QSEVLTIDCLRKERVLT--VGRDRSMQLWKVPEES-----------------RLVFRAPASSLECCCFISNDE-FLSGSD  363 (513)
Q Consensus       304 ~~~v~~~~~~~~~~~~~--~~~d~~i~iwd~~~~~-----------------~~~~~~~~~~v~~~~~~~~~~-~~~~~~  363 (513)
                        +...+++++ ..+++  ++.+|.|++||+.++.                 ...+..|...|.+++|+|++. |++++.
T Consensus       139 --~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~  215 (355)
T 3vu4_A          139 --FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ  215 (355)
T ss_dssp             --EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             --CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC
Confidence              334455566 55554  4689999999998765                 457788999999999999986 789999


Q ss_pred             CCC-EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC
Q 010296          364 DGS-IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG  442 (513)
Q Consensus       364 dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  442 (513)
                      |++ |+|||+.+++++..+...                                   .|...|++++|+|++++|++++.
T Consensus       216 d~~~v~iwd~~~~~~~~~~~~g-----------------------------------~h~~~v~~~~~s~~~~~l~s~s~  260 (355)
T 3vu4_A          216 DGTIIRVFKTEDGVLVREFRRG-----------------------------------LDRADVVDMKWSTDGSKLAVVSD  260 (355)
T ss_dssp             TCSEEEEEETTTCCEEEEEECT-----------------------------------TCCSCEEEEEECTTSCEEEEEET
T ss_pred             CCCEEEEEECCCCcEEEEEEcC-----------------------------------CCCCcEEEEEECCCCCEEEEEEC
Confidence            999 999999999999888621                                   13344999999999999999999


Q ss_pred             CCcEEEEEeCCCCcce-eeeee-----------------cC--cccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          443 NGSVRLWAIESETKDI-QPLYN-----------------LP--LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       443 dg~v~vwd~~~~~~~~-~~~~~-----------------~~--~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      |++|+|||+....... ..+..                 ++  .......++|+|++++|+++ +.||.+++|++..+..
T Consensus       261 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~-~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          261 KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVW-PHTRMIETFKVVFDDE  339 (355)
T ss_dssp             TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEE-TTTTEEEEEEEEEETT
T ss_pred             CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEE-eCCCeEEEEEEEcCCC
Confidence            9999999997652111 11000                 00  12234678999999999999 7899999999876554


Q ss_pred             c
Q 010296          503 N  503 (513)
Q Consensus       503 ~  503 (513)
                      .
T Consensus       340 ~  340 (355)
T 3vu4_A          340 M  340 (355)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.1e-34  Score=271.09  Aligned_cols=259  Identities=25%  Similarity=0.389  Sum_probs=222.4

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      .+.+.+.+|...|++++|+|++++|++|+.|+.|++|+..........                   ..+...+..+.++
T Consensus        77 ~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~  137 (340)
T 4aow_A           77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-------------------VGHTKDVLSVAFS  137 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------------------ECCSSCEEEEEEC
T ss_pred             eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee-------------------cCCCCceeEEEEe
Confidence            456778899999999999999999999999999999999887765543                   4567778999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcce-eeeccCcCCCeEEEEEecCC--CeEEEEeCCCcEEEEeCCCCceeEEeecccCC
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEH-IQAFPGHRGPVSCLTFRQGT--SELFSGSFDRTVKIWNAEDRAYISTLFGHQSE  306 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  306 (513)
                      +++.+|++|+.|+.+++||+..... ...+.+|...+.+++|++++  .++++++.|+.|++||+.+++.+..+.+|...
T Consensus       138 ~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~  217 (340)
T 4aow_A          138 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY  217 (340)
T ss_dssp             TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCc
Confidence            9999999999999999999876544 44567799999999998865  46789999999999999999999999999999


Q ss_pred             eEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296          307 VLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       307 v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      |.+++|+|++. +++++.|+.|++||+.+...+....+...+.+++|+|++.+++++.|+.|++||+.++..+..+....
T Consensus       218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~  297 (340)
T 4aow_A          218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV  297 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccc
Confidence            99999999874 55899999999999999988877777789999999999999999999999999999988877765322


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET  455 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~  455 (513)
                      ..                            .....|...|++++|+|++++|++|+.||.|+|||+.+++
T Consensus       298 ~~----------------------------~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          298 IS----------------------------TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ----------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ee----------------------------eeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            11                            0114566679999999999999999999999999999873

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=277.22  Aligned_cols=307  Identities=9%  Similarity=0.084  Sum_probs=227.2

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccc---------cCCChhhhccCCC---CCCCCCCCCCcccEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKY---------LWPSEEVLKSHGA---KDPQGRATKQSKHIL  224 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~---------~~~~~~~~~~~~~---~~~~~~~~~~~~~v~  224 (513)
                      .-...|.+++|+|||+++||++.|++|+  +...+..+..         +.|.. .......   .........|...|+
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg-~~~~~~~~~~~~~~~~~~~~~~~V~   89 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLE-FENKLDFELAQQNGLLNSQPVCYPR   89 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCC-CCCTTTTSCCCSSCSSTTSCSCCEE
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCC-CcceEEEEeCCCceEeecCCCCcEE
Confidence            4468899999999999999999999998  6555443310         00000 0000001   111111225688899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCC-----CeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce---
Q 010296          225 ALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRG-----PVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY---  296 (513)
Q Consensus       225 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---  296 (513)
                      +++|||+|.+||+++.||.|++|+..+  ++..+. |..     .|.+++|+|+|++|++|+.||+|+||++.++..   
T Consensus        90 ~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~  166 (588)
T 2j04_A           90 VCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP  166 (588)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc
Confidence            999999999999999999999999654  666667 665     499999999999999999999999999998753   


Q ss_pred             ----eEEe----ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee----EE-ecCCCCeeEEEeecCCeEEEEeC
Q 010296          297 ----ISTL----FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL----VF-RAPASSLECCCFISNDEFLSGSD  363 (513)
Q Consensus       297 ----~~~~----~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~-~~~~~~v~~~~~~~~~~~~~~~~  363 (513)
                          +.++    .+|...|.+++|+|++ +++++.|++|++|++.++...    .+ ..|...|.+++|+ ++.+++++ 
T Consensus       167 ~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g~~LASa~-  243 (588)
T 2j04_A          167 EFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-DYKVVLTC-  243 (588)
T ss_dssp             CCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-TTEEEEEC-
T ss_pred             cceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-CCEEEEEe-
Confidence                5665    5677899999999999 999999999999999887742    23 3677899999999 55677776 


Q ss_pred             CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE--ecCCCEEEEec
Q 010296          364 DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV--CGGSDLAASGA  441 (513)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~g~  441 (513)
                      +++|++|++.+++......                                     +|...|..++|  +|++..|++++
T Consensus       244 ~~tIkLWd~~~~~~~~~~~-------------------------------------gh~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          244 PGYVHKIDLKNYSISSLKT-------------------------------------GSLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             SSEEEEEETTTTEEEEEEC-------------------------------------SCCSCCCEEEETTCSSCEEEEECS
T ss_pred             CCeEEEEECCCCeEEEEEc-------------------------------------CCCceEEEEEeeeCCCCCEEEEEc
Confidence            6999999999877643331                                     23344899999  99999999999


Q ss_pred             CCCcEEEEEeCC-----CCcc-------e-------eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          442 GNGSVRLWAIES-----ETKD-------I-------QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       442 ~dg~v~vwd~~~-----~~~~-------~-------~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      .+|+ ++|....     ....       +       ..+..+.+...|.+++|||||+.+|++..-+..+.-|.......
T Consensus       287 edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i~~~~~~y~i~s~~~  365 (588)
T 2j04_A          287 KTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDMERVAFKYKIASEQS  365 (588)
T ss_dssp             SCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEEECSSCCCCCSSSCC
T ss_pred             CCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEeccCceeEEeeccceE
Confidence            9999 9998731     1000       0       01112223456999999999999999866554444555555555


Q ss_pred             cceEEEec
Q 010296          503 NGVLVHPI  510 (513)
Q Consensus       503 ~~~~~~~l  510 (513)
                      -.+.+.||
T Consensus       366 ~~i~f~pL  373 (588)
T 2j04_A          366 FNIMFAPL  373 (588)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEEc
Confidence            56666665

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-35  Score=306.40  Aligned_cols=250  Identities=15%  Similarity=0.194  Sum_probs=208.3

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC--ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG--KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ..+.+|.++|++++|+|++++|++|+.||+|+||++.++  ....                   .+.+|..+|++++|+|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~   63 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAH   63 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECC
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecC
Confidence            467899999999999999999999999999999999843  3333                   2368999999999998


Q ss_pred             C--CCEEEEEeCCCcEEEEeCCCcc--eeeeccCcCCCeEEEEEecC--CCeEEEEeCCCcEEEEeCCCCc--eeEEeec
Q 010296          231 D--GRYLASGGLDRHIHLWDTRIQE--HIQAFPGHRGPVSCLTFRQG--TSELFSGSFDRTVKIWNAEDRA--YISTLFG  302 (513)
Q Consensus       231 ~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~  302 (513)
                      +  +++|++|+.||.|++||+.+++  .+..+.+|...|++++|+|+  +.+|++|+.||.|++||++++.  ....+.+
T Consensus        64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~  143 (753)
T 3jro_A           64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA  143 (753)
T ss_dssp             TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec
Confidence            8  9999999999999999999886  67788889999999999999  9999999999999999998873  3456678


Q ss_pred             ccCCeEEEEeeCC--------------CeEEEEeCCCcEEEEecCCCe----e-eEEecCCCCeeEEEeecC---Ce-EE
Q 010296          303 HQSEVLTIDCLRK--------------ERVLTVGRDRSMQLWKVPEES----R-LVFRAPASSLECCCFISN---DE-FL  359 (513)
Q Consensus       303 ~~~~v~~~~~~~~--------------~~~~~~~~d~~i~iwd~~~~~----~-~~~~~~~~~v~~~~~~~~---~~-~~  359 (513)
                      |...|.++.|+|.              ..+++++.||.|++||+++..    . ..+..|...|.+++|+|+   +. ++
T Consensus       144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~  223 (753)
T 3jro_A          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA  223 (753)
T ss_dssp             CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEE
Confidence            9999999999993              467799999999999998763    2 256678899999999999   65 78


Q ss_pred             EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE
Q 010296          360 SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS  439 (513)
Q Consensus       360 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  439 (513)
                      +++.||.|++||+.++........                                .....+...|++++|+|++++|++
T Consensus       224 s~s~Dg~I~iwd~~~~~~~~~~~~--------------------------------~~~~~~~~~v~~l~~spdg~~l~s  271 (753)
T 3jro_A          224 SVSQDRTCIIWTQDNEQGPWKKTL--------------------------------LKEEKFPDVLWRASWSLSGNVLAL  271 (753)
T ss_dssp             EEESSSCEEEEEESSSSSCCBCCB--------------------------------SSSSCCSSCCCCEEECTTTCCEEE
T ss_pred             EEecCCEEEEecCCCCCCcceeEE--------------------------------eccCCCCCceEEEEEcCCCCEEEE
Confidence            999999999999987642211110                                001345556999999999999999


Q ss_pred             ecCCCcEEEEEeCC
Q 010296          440 GAGNGSVRLWAIES  453 (513)
Q Consensus       440 g~~dg~v~vwd~~~  453 (513)
                      |+.||.|+||++..
T Consensus       272 ~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          272 SGGDNKVTLWKENL  285 (753)
T ss_dssp             ECSSSCEECCBCCS
T ss_pred             EcCCCEEEEEecCC
Confidence            99999999999984

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-35  Score=281.89  Aligned_cols=255  Identities=16%  Similarity=0.260  Sum_probs=213.9

Q ss_pred             ccCCCcccchhhhhc-----cCCCeEEEEECCC----CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCC
Q 010296          143 VQKPEATDEFRVLLK-----HRQSVTAVALSED----DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQ  213 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~-----h~~~V~~~~~s~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (513)
                      +|+......+..+..     |...|++++|+|+    +.+|++|+.||.|++||+.+++.+..+                
T Consensus        48 vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~----------------  111 (366)
T 3k26_A           48 LYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY----------------  111 (366)
T ss_dssp             EEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE----------------
T ss_pred             EEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee----------------
Confidence            344444444444443     6688999999999    679999999999999999998877654                


Q ss_pred             CCCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCcceeeec---cCcCCCeEEEEEecCCCeEEEEeCCCcEEEE
Q 010296          214 GRATKQSKHILALAVSS-DGRYLASGGLDRHIHLWDTRIQEHIQAF---PGHRGPVSCLTFRQGTSELFSGSFDRTVKIW  289 (513)
Q Consensus       214 ~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  289 (513)
                         .+|...|++++|+| ++.+|++|+.||.|++||+.+++.+..+   ..|...|.+++|+|++.+|++++.||.|++|
T Consensus       112 ---~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  188 (366)
T 3k26_A          112 ---VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW  188 (366)
T ss_dssp             ---ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ---cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEE
Confidence               57899999999999 9999999999999999999999988887   6899999999999999999999999999999


Q ss_pred             eCCCCceeEEeec----------------------------ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCee----
Q 010296          290 NAEDRAYISTLFG----------------------------HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESR----  337 (513)
Q Consensus       290 d~~~~~~~~~~~~----------------------------~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~----  337 (513)
                      |+++++.+..+..                            |...|.+++|+ ...+++++.++.|++||+.+...    
T Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~  267 (366)
T 3k26_A          189 RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDK  267 (366)
T ss_dssp             ESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGG
T ss_pred             ECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccc
Confidence            9998765543333                            89999999999 56888999999999999977532    


Q ss_pred             -----------eEEecCCCCeeEEEeecC--Ce-EEEEeCCCCEEEEecCCCCeeE----EeecCCCcccCCCCcccCcC
Q 010296          338 -----------LVFRAPASSLECCCFISN--DE-FLSGSDDGSIELWSLLRKKPVY----IVKNAHPLLDGLKNFEQDEG  399 (513)
Q Consensus       338 -----------~~~~~~~~~v~~~~~~~~--~~-~~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  399 (513)
                                 ..+..|...+.+++|+|+  +. |++++.||.|++||+.++++..    .+..                
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----------------  331 (366)
T 3k26_A          268 IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH----------------  331 (366)
T ss_dssp             CCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECC----------------
T ss_pred             cccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcc----------------
Confidence                       256678888999999998  75 7789999999999999886543    3321                


Q ss_pred             ccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          400 KISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       400 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                                         ..+...|++++|+|++++|++++.||.|+|||+.
T Consensus       332 -------------------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          332 -------------------HKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             -------------------TTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             -------------------cccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence                               1224559999999999999999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.5e-35  Score=278.18  Aligned_cols=289  Identities=15%  Similarity=0.150  Sum_probs=219.9

Q ss_pred             cCCCccc--chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          144 QKPEATD--EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       144 ~~~~~~~--~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      |+.....  .+..+.+|...|++++|+|++++|++++.||.|++|++.++.....+                 ....|..
T Consensus        35 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------------~~~~~~~   97 (372)
T 1k8k_C           35 YEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL-----------------VILRINR   97 (372)
T ss_dssp             EEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE-----------------ECCCCSS
T ss_pred             EeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE-----------------EeecCCC
Confidence            4444443  67788899999999999999999999999999999999887644332                 2356888


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce----eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeC------
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNA------  291 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~------  291 (513)
                      .|.+++|+|++++|++++.++.|++|++..+..    ......|...|.+++|+|++++|++++.||.|++||+      
T Consensus        98 ~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  177 (372)
T 1k8k_C           98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE  177 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTS
T ss_pred             ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccc
Confidence            999999999999999999999999999988762    3334668999999999999999999999999999995      


Q ss_pred             ------------CCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe
Q 010296          292 ------------EDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE  357 (513)
Q Consensus       292 ------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~  357 (513)
                                  ..++.+..+..|...|.+++|+|++ .+++++.|+.|++||+.++..+ .+..+...+.+++|+|++.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  257 (372)
T 1k8k_C          178 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS  257 (372)
T ss_dssp             CCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE
T ss_pred             ccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCC
Confidence                        3677888888899999999999987 5668999999999999887765 6667888999999999998


Q ss_pred             EEEEeCCCCEEEEecCC--CCee--EEeecCCCcccCCCCcccCcCcccccc--CCCCCCC----CCCcCCCCCcceEEE
Q 010296          358 FLSGSDDGSIELWSLLR--KKPV--YIVKNAHPLLDGLKNFEQDEGKISNGH--SENGNLN----PGSYHSSSAYSWVSS  427 (513)
Q Consensus       358 ~~~~~~dg~i~iwd~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~----~~~~~~~~~~~~i~~  427 (513)
                      +++++.|+.|++|++.+  ++..  ..+......      .......+..+.  ...+...    ........|...|++
T Consensus       258 ~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  331 (372)
T 1k8k_C          258 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS------SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQ  331 (372)
T ss_dssp             EEEEETTSSCEEEEEETTTTEEEECCCCCCC--------------CHHHHHHHCCCCC---------CCCSSSSSSCEEE
T ss_pred             EEEEEeCCeEEEEEccCcCceEEEeeccCccccc------hhhhcchhhhhhhcccccccccCccccccccccccCCcce
Confidence            77667999999999988  5311  111110000      000000000000  0000000    000111467788999


Q ss_pred             EEEe-cCC---CEEEEecCCCcEEEEEeCCCC
Q 010296          428 VTVC-GGS---DLAASGAGNGSVRLWAIESET  455 (513)
Q Consensus       428 ~~~s-~~~---~~l~~g~~dg~v~vwd~~~~~  455 (513)
                      ++|+ ++|   .+|++|+.||.|+||++.+..
T Consensus       332 ~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          332 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             eEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            9966 666   999999999999999998763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=291.77  Aligned_cols=270  Identities=10%  Similarity=0.015  Sum_probs=206.3

Q ss_pred             cCCCeEEEEECCCC---------CeEEE-------------------EeCCceEEEEeCCCCccccccCCChhhhccCCC
Q 010296          158 HRQSVTAVALSEDD---------SKGFS-------------------ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGA  209 (513)
Q Consensus       158 h~~~V~~~~~s~~~---------~~l~t-------------------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  209 (513)
                      +.+.|.+|+|+|++         ++||+                   ++.|++|+||++.+++.....            
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~------------  199 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK------------  199 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEE------------
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE------------
Confidence            57788888888875         56655                   557899999999876542110            


Q ss_pred             CCCCCCCCCCcccEEEEEEcCC------CCEEEEEeCCCcEEEEeCCCcce-----------eeeccCcCCCeEEEEEec
Q 010296          210 KDPQGRATKQSKHILALAVSSD------GRYLASGGLDRHIHLWDTRIQEH-----------IQAFPGHRGPVSCLTFRQ  272 (513)
Q Consensus       210 ~~~~~~~~~~~~~v~~~~~s~~------~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~  272 (513)
                         ...+.+|...|.+++|+|+      +.+||+++.||+|+|||+..+..           ...+.+|...|++++|++
T Consensus       200 ---~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~  276 (524)
T 2j04_B          200 ---VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS  276 (524)
T ss_dssp             ---EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS
T ss_pred             ---EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC
Confidence               0012456788999999996      57999999999999999986642           236778999999999998


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCc-eeEEeecccCCeEEE--EeeCCC--eEEEEeCCCcEEEEecCCCeee-EEecCC--
Q 010296          273 GTSELFSGSFDRTVKIWNAEDRA-YISTLFGHQSEVLTI--DCLRKE--RVLTVGRDRSMQLWKVPEESRL-VFRAPA--  344 (513)
Q Consensus       273 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-~~~~~~--  344 (513)
                      + ..|++|+.||+|++||++++. +...+.+|...|.++  .|++++  .|++++.|++|++||+++.... .+..+.  
T Consensus       277 ~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~  355 (524)
T 2j04_B          277 P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG  355 (524)
T ss_dssp             S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred             C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence            6 489999999999999999764 455688899999999  567765  5679999999999999876543 333333  


Q ss_pred             CCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcc
Q 010296          345 SSLECCCFISND-EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYS  423 (513)
Q Consensus       345 ~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  423 (513)
                      ..+.+++|+|++ .|++++.|++|++||++++.++..+..                                     |..
T Consensus       356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-------------------------------------H~~  398 (524)
T 2j04_B          356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-------------------------------------RET  398 (524)
T ss_dssp             CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE-------------------------------------CSS
T ss_pred             CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec-------------------------------------CCC
Confidence            357899999987 488999999999999999888776643                                     334


Q ss_pred             eEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee---cCcccEEEEEEeecCCCEE
Q 010296          424 WVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN---LPLVGFVNSLAFAKSGQFL  482 (513)
Q Consensus       424 ~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~---~~~~~~v~~v~~sp~~~~l  482 (513)
                      .|++|+|+|++++|++|+.||+|+||++...  .+.....   ..+...|.+++|+|++..+
T Consensus       399 ~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~  458 (524)
T 2j04_B          399 TITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKY  458 (524)
T ss_dssp             CEEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEE
T ss_pred             ceEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeE
Confidence            5999999999999999999999999998654  2222111   1123368899999999965

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.7e-34  Score=275.13  Aligned_cols=255  Identities=22%  Similarity=0.326  Sum_probs=217.7

Q ss_pred             cccCCCcccchhhh--hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC
Q 010296          142 RVQKPEATDEFRVL--LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ  219 (513)
Q Consensus       142 ~~~~~~~~~~~~~~--~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (513)
                      ++|+.......+.+  .+|...|++|+|+|+|++|++|+.||+|+|||+.+++.+..+                   .+|
T Consensus       128 ~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-------------------~~h  188 (420)
T 4gga_A          128 YLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-------------------TSH  188 (420)
T ss_dssp             EEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-------------------CCC
T ss_pred             EEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE-------------------eCC
Confidence            35666666655544  467889999999999999999999999999999999887754                   678


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc-ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc---
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ-EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA---  295 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---  295 (513)
                      ...|.+++++  +.+|++|+.|+.+++|+.... ..+..+.+|...+..+.|+|++.++++++.|+.|++|++.+++   
T Consensus       189 ~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~  266 (420)
T 4gga_A          189 SARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW  266 (420)
T ss_dssp             SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCS
T ss_pred             CCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccc
Confidence            8999998885  679999999999999998764 4567788999999999999999999999999999999998765   


Q ss_pred             -eeEEeecccCCeEEEEeeCCC-eE-EEE--eCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEE--eCCCCE
Q 010296          296 -YISTLFGHQSEVLTIDCLRKE-RV-LTV--GRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSG--SDDGSI  367 (513)
Q Consensus       296 -~~~~~~~~~~~v~~~~~~~~~-~~-~~~--~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~--~~dg~i  367 (513)
                       .+.....|...|.+++|+|.+ .+ +++  +.|++|++||+.++...........+.++.|++++. ++++  +.|+.|
T Consensus       267 ~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I  346 (420)
T 4gga_A          267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQL  346 (420)
T ss_dssp             CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred             eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEE
Confidence             345667799999999999954 33 333  479999999999999887777778899999999885 5544  479999


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR  447 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~  447 (513)
                      +|||+.+++++..+.                                     +|...|++++|+|+|++|+||+.||+|+
T Consensus       347 ~iwd~~~~~~v~~l~-------------------------------------gH~~~V~~l~~spdg~~l~S~s~D~tvr  389 (420)
T 4gga_A          347 VIWKYPTMAKVAELK-------------------------------------GHTSRVLSLTMSPDGATVASAAADETLR  389 (420)
T ss_dssp             EEEETTTCCEEEEEC-------------------------------------CCSSCEEEEEECTTSSCEEEEETTTEEE
T ss_pred             EEEECCCCcEEEEEc-------------------------------------CCCCCEEEEEEcCCCCEEEEEecCCeEE
Confidence            999999999998884                                     3445599999999999999999999999


Q ss_pred             EEEeCCC
Q 010296          448 LWAIESE  454 (513)
Q Consensus       448 vwd~~~~  454 (513)
                      |||+...
T Consensus       390 iWdv~~~  396 (420)
T 4gga_A          390 LWRCFEL  396 (420)
T ss_dssp             EECCSCS
T ss_pred             EEECCCC
Confidence            9999765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=269.20  Aligned_cols=255  Identities=17%  Similarity=0.226  Sum_probs=224.6

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+......+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+                    .|...
T Consensus        58 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------~~~~~  117 (369)
T 3zwl_B           58 VWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW--------------------KSPVP  117 (369)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE--------------------ECSSC
T ss_pred             EEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------ecCCC
Confidence            5666777788889999999999999999999999999999999999998877654                    36778


Q ss_pred             EEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCcc-----------eeeeccCcCC--CeEEEEEecCCCeEEEEeCCC
Q 010296          223 ILALAVSSDGRYLASGGLD-----RHIHLWDTRIQE-----------HIQAFPGHRG--PVSCLTFRQGTSELFSGSFDR  284 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg  284 (513)
                      |.+++|+|++++|++++.+     +.|++|++....           .+..+..|..  .+.+++|+|++++|++++.||
T Consensus       118 v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  197 (369)
T 3zwl_B          118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG  197 (369)
T ss_dssp             EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS
T ss_pred             eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC
Confidence            9999999999999999998     999999987654           3344455666  899999999999999999999


Q ss_pred             cEEEEeCCC-CceeEEeecccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEE
Q 010296          285 TVKIWNAED-RAYISTLFGHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSG  361 (513)
Q Consensus       285 ~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~  361 (513)
                      .|++||+.+ ...+..+..|...|.+++|+|++. +++++.++.|++||+.+........+...+.+++|+|++. ++++
T Consensus       198 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  277 (369)
T 3zwl_B          198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILG  277 (369)
T ss_dssp             EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEE
T ss_pred             EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEe
Confidence            999999998 788888999999999999999884 5688899999999999988886666888999999999986 6678


Q ss_pred             eCCC--------------CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEE
Q 010296          362 SDDG--------------SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSS  427 (513)
Q Consensus       362 ~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~  427 (513)
                      +.++              .+++||+.+++++..+..+                                     ...|++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------------------------------~~~v~~  320 (369)
T 3zwl_B          278 GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-------------------------------------FGPLNT  320 (369)
T ss_dssp             ECCC-------------CEEEEEETTTCCEEEEEECC-------------------------------------SSCEEE
T ss_pred             ecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-------------------------------------cCcEEE
Confidence            8777              8999999999988887533                                     334999


Q ss_pred             EEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          428 VTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       428 ~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      ++|+|++++|++++.||.|+||++..+
T Consensus       321 ~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          321 VAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECccc
Confidence            999999999999999999999999865

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2e-34  Score=276.04  Aligned_cols=255  Identities=16%  Similarity=0.225  Sum_probs=206.7

Q ss_pred             ccCCCcccchhhh--hccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC
Q 010296          143 VQKPEATDEFRVL--LKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ  219 (513)
Q Consensus       143 ~~~~~~~~~~~~~--~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (513)
                      +|+.........+  .+|.+.|++++|+| ++.+|++++.|+.|++||+.+.. ...+.                ....|
T Consensus       100 iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~----------------~~~~~  162 (383)
T 3ei3_B          100 LWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-IQVFA----------------KTDSW  162 (383)
T ss_dssp             EEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-EEEEE----------------CCCCS
T ss_pred             EEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-eEEEe----------------ccCCC
Confidence            4444444444444  37999999999999 78999999999999999998633 22220                12345


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCC----C
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAED----R  294 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~----~  294 (513)
                      ...|.+++|+|++++|++|+.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+++    +
T Consensus       163 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  241 (383)
T 3ei3_B          163 DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN  241 (383)
T ss_dssp             SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT
T ss_pred             CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc
Confidence            688999999999999999999999999999 5778889999999999999999999 899999999999999987    5


Q ss_pred             ceeEEeecccCCeEEEEeeC-CC-eEEEEeCCCcEEEEecCCCeee-EEecC-----------------CCCeeEEEeec
Q 010296          295 AYISTLFGHQSEVLTIDCLR-KE-RVLTVGRDRSMQLWKVPEESRL-VFRAP-----------------ASSLECCCFIS  354 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~-----------------~~~v~~~~~~~  354 (513)
                      .++..+ +|...|.+++|+| ++ .+++++.|+.|++||+.+.... .+..+                 ...+..++++|
T Consensus       242 ~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~  320 (383)
T 3ei3_B          242 SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP  320 (383)
T ss_dssp             CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC
T ss_pred             ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC
Confidence            566666 6999999999999 87 5568889999999999876543 22222                 23445577777


Q ss_pred             CCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC
Q 010296          355 NDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS  434 (513)
Q Consensus       355 ~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  434 (513)
                      ++.+ +++.||.|+|||+.+++++..+....                                   +...+.+++|+|++
T Consensus       321 dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~-----------------------------------~~~~~~~~~~s~~g  364 (383)
T 3ei3_B          321 DDQL-LLNDKRTIDIYDANSGGLVHQLRDPN-----------------------------------AAGIISLNKFSPTG  364 (383)
T ss_dssp             CTTT-CTTCCCCEEEEETTTCCEEEEECBTT-----------------------------------BCSCCCEEEECTTS
T ss_pred             Cccc-ccCCCCeEEEEecCCCceeeeecCCC-----------------------------------CCceEEEEEEecCc
Confidence            7777 88899999999999999988886421                                   22337888999999


Q ss_pred             CEEEEecCCCcEEEEEeCC
Q 010296          435 DLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       435 ~~l~~g~~dg~v~vwd~~~  453 (513)
                      ++|++|+ ||.|+||++.+
T Consensus       365 ~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          365 DVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             SEEEEEE-TTEEEEEECC-
T ss_pred             cEEEEec-CCcEEEEecCC
Confidence            9999997 99999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-34  Score=278.95  Aligned_cols=268  Identities=12%  Similarity=0.097  Sum_probs=216.6

Q ss_pred             chhhhhccCCCeEEEEECCC----C---CeEEEEeCCceEEEEeCCCCcc-----ccccCCChhhhccCCCCCCCCCCCC
Q 010296          151 EFRVLLKHRQSVTAVALSED----D---SKGFSASKDGSILHWDVSSGKG-----VKYLWPSEEVLKSHGAKDPQGRATK  218 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~----~---~~l~t~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  218 (513)
                      .+..+.+|...|++++|+|+    +   .+|++++.||.|++|++.++..     ...+                   ..
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~  114 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-------------------DL  114 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-------------------CC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee-------------------cc
Confidence            57778899999999999999    9   9999999999999999988775     3332                   44


Q ss_pred             C-----cccEEEEEEc----CCCCE-EEEEeCCCcEEEEeCCC------cceee-----ec-------cCcCCCeEEEEE
Q 010296          219 Q-----SKHILALAVS----SDGRY-LASGGLDRHIHLWDTRI------QEHIQ-----AF-------PGHRGPVSCLTF  270 (513)
Q Consensus       219 ~-----~~~v~~~~~s----~~~~~-l~s~~~dg~i~vwd~~~------~~~~~-----~~-------~~~~~~v~~~~~  270 (513)
                      |     ...|.+++|+    |++.+ |++++.+|.|++||+.+      ++.+.     .+       ..|...|.+++|
T Consensus       115 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  194 (397)
T 1sq9_A          115 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI  194 (397)
T ss_dssp             SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred             cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE
Confidence            5     5889999999    99999 99999999999999998      76666     66       448899999999


Q ss_pred             ecCCCeEEEEeCCCcEEEEeCCCCceeEEeec---c---cCCeEEEEeeCCCe-EEEEeCC---CcEEEEecCCCeee-E
Q 010296          271 RQGTSELFSGSFDRTVKIWNAEDRAYISTLFG---H---QSEVLTIDCLRKER-VLTVGRD---RSMQLWKVPEESRL-V  339 (513)
Q Consensus       271 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~-~~~~~~d---~~i~iwd~~~~~~~-~  339 (513)
                      +|++ +|++++.||.|++||+++++.+..+..   |   ...|.+++|+|++. +++++.+   +.|++||+.+...+ .
T Consensus       195 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~  273 (397)
T 1sq9_A          195 SERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS  273 (397)
T ss_dssp             CTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred             CCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccce
Confidence            9999 999999999999999999999999988   8   99999999999875 5578888   99999999887766 4


Q ss_pred             Eec-------------CCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296          340 FRA-------------PASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH  405 (513)
Q Consensus       340 ~~~-------------~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  405 (513)
                      +..             |...|.+++|+|++. |++++.||.|++||+.+++++..+.........    ..        .
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~--------~  341 (397)
T 1sq9_A          274 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI----EE--------D  341 (397)
T ss_dssp             ECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSS----GG--------G
T ss_pred             eccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccc----hh--------h
Confidence            555             788999999999885 779999999999999999998888721100000    00        0


Q ss_pred             CCCCCCCCCCcCCCCCcceEEEEEEecCC----------CEEEEecCCCcEEEEEeCCC
Q 010296          406 SENGNLNPGSYHSSSAYSWVSSVTVCGGS----------DLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~----------~~l~~g~~dg~v~vwd~~~~  454 (513)
                      ...+..    .....|...|++++|+|++          ++|++++.||.|+||++.++
T Consensus       342 ~~~g~~----~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          342 ILAVDE----HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CCCBCT----TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             hhcccc----ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            000000    0002236679999999998          79999999999999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-34  Score=277.56  Aligned_cols=326  Identities=13%  Similarity=0.082  Sum_probs=233.0

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCc---cccccCCChh---------------hhccC-------------
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK---GVKYLWPSEE---------------VLKSH-------------  207 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~~~---------------~~~~~-------------  207 (513)
                      ..+|++++|+|+|++|+++ .++.|++||+.+++   .+..+.....               .+...             
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4689999999999966665 57899999999988   4443321110               00000             


Q ss_pred             -------CCCCCCCCCCCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEeCC--Ccceeeecc--CcCCCeEEEEEecCCC
Q 010296          208 -------GAKDPQGRATKQSKHILALAVSSDGRYL-ASGGLDRHIHLWDTR--IQEHIQAFP--GHRGPVSCLTFRQGTS  275 (513)
Q Consensus       208 -------~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~  275 (513)
                             ....+.....+|...|++++|+|++++| ++|+.||.|+||++.  +++.+..+.  .|...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                   0000111223567789999999999996 899999999999999  888888876  5678999999999999


Q ss_pred             eEEEEeCCCcEEEEeCCCCceeE----EeecccCCeEEEEeeCC---C-eEEEEeCCCcEEEEecCCCeeeE--EecCCC
Q 010296          276 ELFSGSFDRTVKIWNAEDRAYIS----TLFGHQSEVLTIDCLRK---E-RVLTVGRDRSMQLWKVPEESRLV--FRAPAS  345 (513)
Q Consensus       276 ~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~-~~~~~~~d~~i~iwd~~~~~~~~--~~~~~~  345 (513)
                      +|++++.+|.|++|++.++....    .+.+|...|.+++|+|+   + .+++++.|+.|++||+.++..+.  ...|..
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            99999999999999998876544    77889999999999998   8 56689999999999999877653  447889


Q ss_pred             CeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296          346 SLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW  424 (513)
Q Consensus       346 ~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  424 (513)
                      .|.+++|+ ++. |++++.|+.|++||+.+++++..+...+.... +....         ........  ..........
T Consensus       243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~--~~~~~~~~~~  309 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKP-YLNDQ---------HLAPPRFQ--NENNDIIEFA  309 (450)
T ss_dssp             CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGG-GCCTT---------SBC------------CBCCC
T ss_pred             ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhh-hhhhc---------cccccccc--ccccccceEE
Confidence            99999999 774 88999999999999999999888764321100 00000         00000000  0000122344


Q ss_pred             EEEEEEecCCCEEEEec-CCCcEEEEEe--CCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecC------CCccccc
Q 010296          425 VSSVTVCGGSDLAASGA-GNGSVRLWAI--ESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ------EPRLGRW  495 (513)
Q Consensus       425 i~~~~~s~~~~~l~~g~-~dg~v~vwd~--~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~------dg~v~~W  495 (513)
                      |.+++|+|++++|++++ .++.|+||++  ... ..+..+..+...+.|.+++|+|++ ++++..+.      +..|.+|
T Consensus       310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~-~~l~~~~~~~~~~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK-GDLALKQIITFPYNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             EEEEEECSSSSEEEEEETTCSEEEEEEECSSST-TCEEEEEEEECSSCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC-CceeeccEeccCCceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence            99999999999999998 8999999999  433 223333333333889999999964 44444343      4558899


Q ss_pred             ccCCC
Q 010296          496 GHLPA  500 (513)
Q Consensus       496 ~~~~~  500 (513)
                      .+...
T Consensus       388 ~~~~~  392 (450)
T 2vdu_B          388 EYNLN  392 (450)
T ss_dssp             EEETT
T ss_pred             EEEcC
Confidence            76544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-33  Score=260.18  Aligned_cols=252  Identities=16%  Similarity=0.248  Sum_probs=218.9

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+.........+..|...|++++|+|++++|++|+.||.|++|++........                ...+..|...
T Consensus        43 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~----------------~~~~~~~~~~  106 (313)
T 3odt_A           43 LWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDP----------------LYTLIGHQGN  106 (313)
T ss_dssp             EEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-----------------CEECCCSSC
T ss_pred             EEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCc----------------ccchhhcccC
Confidence            455566667778889999999999999999999999999999999976542221                1234678999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      |.+++|  ++++|++++.||.|++||  .+..+..+..|...|.+++|.| ++.+|++++.||.|++||  ..+.+..+.
T Consensus       107 i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~  180 (313)
T 3odt_A          107 VCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFS  180 (313)
T ss_dssp             EEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEEC
T ss_pred             EEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEe
Confidence            999999  577999999999999999  6778888889999999999998 899999999999999999  455666666


Q ss_pred             c-ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeE
Q 010296          302 G-HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVY  379 (513)
Q Consensus       302 ~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  379 (513)
                      . |...+.+++|+|++.+++++.++.|++||++++..+ .+..|...+.+++|+|++.+++++.||.|++||+.+++++.
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  260 (313)
T 3odt_A          181 GIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQ  260 (313)
T ss_dssp             SSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEE
T ss_pred             ccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeE
Confidence            6 889999999999999999999999999999987766 56678999999999999999999999999999999999888


Q ss_pred             EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .+....                                     ..|++++|+|+++ +++++.||.|++|++.++
T Consensus       261 ~~~~~~-------------------------------------~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          261 VITLPA-------------------------------------ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             EEECSS-------------------------------------SCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             EEeccC-------------------------------------ceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            875432                                     2399999999998 667899999999999876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.3e-34  Score=276.30  Aligned_cols=256  Identities=16%  Similarity=0.266  Sum_probs=212.6

Q ss_pred             cchhhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          150 DEFRVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      ..+..+.+|.+.|++++|+| ++.+|++|+.||+|+||++.++......            ..+...+.+|...|++++|
T Consensus        72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~  139 (402)
T 2aq5_A           72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL------------REPVITLEGHTKRVGIVAW  139 (402)
T ss_dssp             TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB------------CSCSEEEECCSSCEEEEEE
T ss_pred             CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc------------CCceEEecCCCCeEEEEEE
Confidence            34556789999999999999 9999999999999999999987532211            0112234689999999999


Q ss_pred             cCCC-CEEEEEeCCCcEEEEeCCCcceeeec--cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe-eccc
Q 010296          229 SSDG-RYLASGGLDRHIHLWDTRIQEHIQAF--PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-FGHQ  304 (513)
Q Consensus       229 s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~  304 (513)
                      +|++ .+|++++.||.|++||+.+++.+..+  ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|.
T Consensus       140 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  219 (402)
T 2aq5_A          140 HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE  219 (402)
T ss_dssp             CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred             CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCC
Confidence            9998 69999999999999999999999998  789999999999999999999999999999999999998888 6787


Q ss_pred             CC-eEEEEeeCCCeEEEEe----CCCcEEEEecCCCee---eEEecCCCCeeEEEeecCCe-EE-EEeCCCCEEEEecCC
Q 010296          305 SE-VLTIDCLRKERVLTVG----RDRSMQLWKVPEESR---LVFRAPASSLECCCFISNDE-FL-SGSDDGSIELWSLLR  374 (513)
Q Consensus       305 ~~-v~~~~~~~~~~~~~~~----~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~i~iwd~~~  374 (513)
                      +. +.++.|+|++.+++++    .++.|++||+.+...   .....+...+.+++|+|++. ++ +++.||.|++|++.+
T Consensus       220 ~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          220 GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred             CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence            76 8999999999877554    899999999987654   23345677899999999986 43 566799999999999


Q ss_pred             CCe-eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296          375 KKP-VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       375 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~  453 (513)
                      +++ +..+...                                   .+...|.+++|+|++.++++  .++.+++|++.+
T Consensus       300 ~~~~~~~l~~~-----------------------------------~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          300 EAPFLHYLSMF-----------------------------------SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             STTCEEEEEEE-----------------------------------CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred             CCcceEeeccc-----------------------------------ccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence            885 4444321                                   12344999999999998775  456999999987


Q ss_pred             C
Q 010296          454 E  454 (513)
Q Consensus       454 ~  454 (513)
                      +
T Consensus       343 ~  343 (402)
T 2aq5_A          343 R  343 (402)
T ss_dssp             T
T ss_pred             C
Confidence            6

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=271.05  Aligned_cols=280  Identities=18%  Similarity=0.230  Sum_probs=201.1

Q ss_pred             ccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC---C
Q 010296          157 KHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD---G  232 (513)
Q Consensus       157 ~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~  232 (513)
                      +|...|++++|+| ++.+|++++.||.|++||+.++.....+                    .+...+.++.|+|.   +
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~  156 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF--------------------NFEETVYSHHMSPVSTKH  156 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE--------------------ECSSCEEEEEECSSCSSC
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec--------------------cCCCceeeeEeecCCCCC
Confidence            6999999999999 7889999999999999999998876644                    46677999999984   4


Q ss_pred             CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCc-eeEEe----------
Q 010296          233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRA-YISTL----------  300 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~-~~~~~----------  300 (513)
                      .+|++++.++.|++||+.+++.+..+..|...|.+++|+|++.+ |++++.||.|++||++++. .+..+          
T Consensus       157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  236 (408)
T 4a11_B          157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQA  236 (408)
T ss_dssp             CEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred             cEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccccee
Confidence            49999999999999999999999999999999999999999985 8899999999999998765 33333          


Q ss_pred             -----ecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEec-------CCCCeeEEEeecCCeEEEEeCCCCE
Q 010296          301 -----FGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRA-------PASSLECCCFISNDEFLSGSDDGSI  367 (513)
Q Consensus       301 -----~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~dg~i  367 (513)
                           ..|...|.+++|+|++ .+++++.|+.|++||+.++.......       .......+.......+++++.++.|
T Consensus       237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  316 (408)
T 4a11_B          237 VESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI  316 (408)
T ss_dssp             TTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred             eccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE
Confidence                 5688899999999988 56689999999999998876542111       1111222233334568888999999


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR  447 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~  447 (513)
                      ++||+.+++++..+..                                     |...|++++|+|++++|++|+.||.|+
T Consensus       317 ~v~d~~~~~~~~~~~~-------------------------------------~~~~v~~~~~s~~~~~l~s~~~dg~i~  359 (408)
T 4a11_B          317 AVYTVYSGEQITMLKG-------------------------------------HYKTVDCCVFQSNFQELYSGSRDCNIL  359 (408)
T ss_dssp             EEEETTTCCEEEEECC-------------------------------------CSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             EEEECcCCcceeeecc-------------------------------------CCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence            9999999999888743                                     334499999999999999999999999


Q ss_pred             EEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          448 LWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       448 vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      +|++.+. ..+....     .......+.|....+.+..+.++.+++|+...
T Consensus       360 iw~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          360 AWVPSLY-EPVPDDD-----ETTTKSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             EEEECC----------------------------------------------
T ss_pred             EEeCCCC-CccCCCC-----ceEeccccccccceeecccCccCceeecCCcc
Confidence            9999987 2222111     11222345555555555558899999997653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-34  Score=275.09  Aligned_cols=288  Identities=13%  Similarity=0.113  Sum_probs=201.9

Q ss_pred             ccCCCcc--cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCc---cccccCCChhhhccCCCCCCCCCCC
Q 010296          143 VQKPEAT--DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK---GVKYLWPSEEVLKSHGAKDPQGRAT  217 (513)
Q Consensus       143 ~~~~~~~--~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  217 (513)
                      +|+....  .....+.+|.+.|++++|+|++++|++|+.|++|++||+.++.   ...                   .+.
T Consensus        37 iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-------------------~~~   97 (377)
T 3dwl_C           37 LYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTL-------------------VLL   97 (377)
T ss_dssp             EEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEE-------------------ECC
T ss_pred             EEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeee-------------------Eec
Confidence            3444444  6778888999999999999999999999999999999999876   222                   245


Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc---eeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC-
Q 010296          218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE---HIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE-  292 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-  292 (513)
                      .|...|++++|+|++++|++|+.|+.|++||+.+++   ....+.. |...|.+++|+|++++|++++.|+.|++||+. 
T Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  177 (377)
T 3dwl_C           98 RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYV  177 (377)
T ss_dssp             CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECC
T ss_pred             ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEe
Confidence            789999999999999999999999999999999887   4677777 99999999999999999999999999999985 


Q ss_pred             -----------------CCceeEEeecccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCee-----eEEecCCCCeeE
Q 010296          293 -----------------DRAYISTLFGHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESR-----LVFRAPASSLEC  349 (513)
Q Consensus       293 -----------------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~v~~  349 (513)
                                       .++++..+ +|...|.+++|+|++. +++++.|+.|++||+.++..     ..+..|...+.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~  256 (377)
T 3dwl_C          178 RDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRS  256 (377)
T ss_dssp             SSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEE
T ss_pred             cccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEE
Confidence                             34456666 8999999999999885 66899999999999988765     367788889999


Q ss_pred             EEeecCCeEEEEeCCCCEEEEecCCCC--eeEEeecCCCcccC------------CCC--cccCcCccccccCCCCCCCC
Q 010296          350 CCFISNDEFLSGSDDGSIELWSLLRKK--PVYIVKNAHPLLDG------------LKN--FEQDEGKISNGHSENGNLNP  413 (513)
Q Consensus       350 ~~~~~~~~~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~------------~~~--~~~~~~~i~~~~~~~~~~~~  413 (513)
                      ++|+|++.+++++.++.+.+|+.....  ....+.........            ...  +......+.. ....+....
T Consensus       257 ~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~  335 (377)
T 3dwl_C          257 LLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRN-MDLKGSSQS  335 (377)
T ss_dssp             EEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------
T ss_pred             EEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccc-hhhcccccc
Confidence            999999986655566667788776432  11111111100000            000  0000000000 000000001


Q ss_pred             CCcCCCCCcceEEEEEEecCC-C---EEEEecCCCcEEEEEe
Q 010296          414 GSYHSSSAYSWVSSVTVCGGS-D---LAASGAGNGSVRLWAI  451 (513)
Q Consensus       414 ~~~~~~~~~~~i~~~~~s~~~-~---~l~~g~~dg~v~vwd~  451 (513)
                      .......|...|+++++.+.. .   .|+||+.||.|+|||+
T Consensus       336 ~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          336 ISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            111224588889999976643 3   6999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.4e-33  Score=271.30  Aligned_cols=289  Identities=9%  Similarity=0.063  Sum_probs=235.8

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      +..+..+ ..+.+++|+|++.++++++.++.|++||+.+++....+..              ....+|...|.+++|+|+
T Consensus       116 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------------~~~~~~~~~v~~~~~~~~  180 (433)
T 3bws_A          116 ISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP--------------EKYKKKLGFVETISIPEH  180 (433)
T ss_dssp             EEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC--------------HHHHTTCCEEEEEEEGGG
T ss_pred             EEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc--------------ccccccCCceeEEEEcCC
Confidence            3334334 4567999999878888888899999999998887653210              012467889999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEE-EeCCCcEEEEeCCCCceeEEeecccCCeEEE
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFS-GSFDRTVKIWNAEDRAYISTLFGHQSEVLTI  310 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  310 (513)
                      +.++++++.++.|++||+.+++.+..+..|...+.+++|+|+++++++ ++.++.|++||+.+++.+..+.. ...+.++
T Consensus       181 ~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~  259 (433)
T 3bws_A          181 NELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGL  259 (433)
T ss_dssp             TEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEE
Confidence            999999999999999999999999999889999999999999998864 45799999999999988877764 4558999


Q ss_pred             EeeCCC-eEEEEe--------CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeE
Q 010296          311 DCLRKE-RVLTVG--------RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVY  379 (513)
Q Consensus       311 ~~~~~~-~~~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~  379 (513)
                      +|+|++ .+++++        .++.|++||+.++.......+...+.+++|+|++.  +++++.++.|++||+.+++.+.
T Consensus       260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~  339 (433)
T 3bws_A          260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK  339 (433)
T ss_dssp             EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE
Confidence            999988 455666        48899999999888776666666888999999984  4577899999999999988877


Q ss_pred             EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC---------------CC
Q 010296          380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG---------------NG  444 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---------------dg  444 (513)
                      .+....                                      .+.+++|+|++++|++++.               ||
T Consensus       340 ~~~~~~--------------------------------------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg  381 (433)
T 3bws_A          340 SIPVFD--------------------------------------KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLG  381 (433)
T ss_dssp             EEECSS--------------------------------------SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCC
T ss_pred             EecCCC--------------------------------------CCCeEEEcCCCCEEEEEecCCCccccccccccccce
Confidence            765321                                      2889999999998888876               57


Q ss_pred             cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          445 SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       445 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .|++||+.++ ..+..+.   ....+.+++|+|+|++|+++++.|+.|++|++.
T Consensus       382 ~v~~~d~~~~-~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          382 KVYVIDTTTD-TVKEFWE---AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEEETTTT-EEEEEEE---CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EEEEEECCCC-cEEEEec---CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            9999999887 3333332   355789999999999999886679999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-34  Score=280.73  Aligned_cols=275  Identities=12%  Similarity=0.208  Sum_probs=213.9

Q ss_pred             EECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCEEEEEeCCCcE
Q 010296          166 ALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRYLASGGLDRHI  244 (513)
Q Consensus       166 ~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i  244 (513)
                      .|+|++..+++++      .|+.. ++.+..+                  ..+|...|++++|+| ++.+|++|+.||.|
T Consensus        34 ~f~~~~~~~~~~~------~w~~~-g~~~~~~------------------~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v   88 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLR-GKLIATL------------------MENEPNSITSSAVSPGETPYLITGSDQGVI   88 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCC-CCEEEEE------------------CTTTTSCEEEEEEECSSSCEEEEEETTSEE
T ss_pred             hcCCccccccccc------ccccc-ceEEeee------------------ccCCCCceEEEEECCCCCCEEEEecCCceE
Confidence            4788888877765      37743 4444332                  257899999999999 99999999999999


Q ss_pred             EEEeCCC---cc---eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC---CCceeEEeec------------c
Q 010296          245 HLWDTRI---QE---HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE---DRAYISTLFG------------H  303 (513)
Q Consensus       245 ~vwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~------------~  303 (513)
                      +|||+.+   +.   ....+ .|...|.+++|+|++.+|++++.||.|++||+.   +++.+..+..            +
T Consensus        89 ~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  167 (437)
T 3gre_A           89 KIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK  167 (437)
T ss_dssp             EEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred             EEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence            9999876   43   22333 489999999999999999999999999999994   5555443332            3


Q ss_pred             cCCeEEEE--eeCCC-eEEEEeCCCcEEEEecCCCeee-EEec--CCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCC
Q 010296          304 QSEVLTID--CLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRA--PASSLECCCFISNDE-FLSGSDDGSIELWSLLRKK  376 (513)
Q Consensus       304 ~~~v~~~~--~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~--~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~  376 (513)
                      ...+.++.  +++++ .+++++.|+.|++||+++...+ .+..  |...|.+++|+|++. |++|+.||.|++||+++++
T Consensus       168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  247 (437)
T 3gre_A          168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV  247 (437)
T ss_dssp             CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred             ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc
Confidence            44556665  34556 5668999999999999988776 4444  678999999999986 7899999999999999999


Q ss_pred             eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe----cCCCEEEEecCCCcEEEEEeC
Q 010296          377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC----GGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~g~~dg~v~vwd~~  452 (513)
                      ++..+..                                    .+...|++++|+    |++.+|++|+.||.|+|||+.
T Consensus       248 ~~~~~~~------------------------------------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          248 LIRSWSF------------------------------------GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             EEEEEBC------------------------------------TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             EEEEEec------------------------------------CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence            8888753                                    223449999665    467899999999999999998


Q ss_pred             CCCcceeeeeec------------------------CcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccce
Q 010296          453 SETKDIQPLYNL------------------------PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGV  505 (513)
Q Consensus       453 ~~~~~~~~~~~~------------------------~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~  505 (513)
                      ++ ..+..+...                        .|...|++++|+ ++++|+++ +.||.|++|++..+.....
T Consensus       292 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~-~~d~~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          292 KG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTD-EATSSIVMFSLNELSSSKA  365 (437)
T ss_dssp             TT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEE-GGGTEEEEEETTCGGGCEE
T ss_pred             CC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEec-CCCCeEEEEECCCcccceE
Confidence            87 333333211                        166779999999 77888888 9999999999987765433

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=265.56  Aligned_cols=261  Identities=11%  Similarity=0.171  Sum_probs=204.6

Q ss_pred             hccCCCeEEEEECCC---CCeEEEEeCCceEEEEeCCCCc-cccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE---
Q 010296          156 LKHRQSVTAVALSED---DSKGFSASKDGSILHWDVSSGK-GVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV---  228 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~---~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---  228 (513)
                      .+|...|++++|+|+   +.+|++|+.||.|++|++.++. .+..                   +.+|...|.+++|   
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------~~~~~~~v~~~~~~~~  122 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS-------------------VKGHKEIINAIDGIGG  122 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE-------------------ECCCSSCEEEEEEESG
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE-------------------EEecccceEEEeeccc
Confidence            379999999999999   6999999999999999999877 4443                   3578999999955   


Q ss_pred             ---cCCCCEEEEEeCCCcEEEEeCCCcc-eeeeccCcCC----CeEEEE----EecCCCeEEEEeCCCcEEEEeCCCCce
Q 010296          229 ---SSDGRYLASGGLDRHIHLWDTRIQE-HIQAFPGHRG----PVSCLT----FRQGTSELFSGSFDRTVKIWNAEDRAY  296 (513)
Q Consensus       229 ---s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~  296 (513)
                         +|++++|++++.||.|++||+.++. .+..+..|.+    .|.+++    |+|++++|++++.||.|++||+++++.
T Consensus       123 ~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  202 (357)
T 3i2n_A          123 LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL  202 (357)
T ss_dssp             GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE
T ss_pred             cccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce
Confidence               6789999999999999999999887 6777766554    899998    678999999999999999999999887


Q ss_pred             eEEeecccCCeEEEEeeC---CC-eEEEEeCCCcEEEEecCCCeee------EEecCCCCeeEEEeecCCe--EEEEeCC
Q 010296          297 ISTLFGHQSEVLTIDCLR---KE-RVLTVGRDRSMQLWKVPEESRL------VFRAPASSLECCCFISNDE--FLSGSDD  364 (513)
Q Consensus       297 ~~~~~~~~~~v~~~~~~~---~~-~~~~~~~d~~i~iwd~~~~~~~------~~~~~~~~v~~~~~~~~~~--~~~~~~d  364 (513)
                      ... ..|...|.+++|+|   ++ .+++++.++.|++||+++....      ....|...|.+++|+|++.  |++++.|
T Consensus       203 ~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  281 (357)
T 3i2n_A          203 RWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA  281 (357)
T ss_dssp             EEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             eee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC
Confidence            554 56889999999998   55 6668999999999999876543      2237899999999999985  7799999


Q ss_pred             CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE-EecCC
Q 010296          365 GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA-SGAGN  443 (513)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~g~~d  443 (513)
                      |.|++||+..+.............    ........              ......|...|++++|+|++++|+ +++.|
T Consensus       282 g~i~iwd~~~~~~~~~~~~~g~~~----~~~~~~~~--------------~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d  343 (357)
T 3i2n_A          282 GGLHLWKYEYPIQRSKKDSEGIEM----GVAGSVSL--------------LQNVTLSTQPISSLDWSPDKRGLCVCSSFD  343 (357)
T ss_dssp             SEEEEEEEECCSCC--CCTTSCCC----CCCCEEEE--------------EEEEECCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             CcEEEeecCCCcccccccCCCCcc----ccccccce--------------eeccccCCCCeeEEEEcCCCCeEEEEecCC
Confidence            999999998765443221110000    00000000              000134556699999999999998 89999


Q ss_pred             CcEEEEEeCCC
Q 010296          444 GSVRLWAIESE  454 (513)
Q Consensus       444 g~v~vwd~~~~  454 (513)
                      |.|+||++.+.
T Consensus       344 ~~i~iw~~~~~  354 (357)
T 3i2n_A          344 QTVRVLIVTKL  354 (357)
T ss_dssp             SEEEEEEECC-
T ss_pred             CcEEEEECCCc
Confidence            99999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.8e-33  Score=270.95  Aligned_cols=247  Identities=14%  Similarity=0.248  Sum_probs=203.9

Q ss_pred             CCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCC----------cceeeeccCcCCCeEEEEEecCCC-eEEEEeCC
Q 010296          216 ATKQSKHILALAVSSD-GRYLASGGLDRHIHLWDTRI----------QEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFD  283 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d  283 (513)
                      ...|...|++++|+|+ +.+|++++.+|.|++|++..          ...+..+.+|...|.+++|+|++. +|++|+.|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            4678999999999997 78999999999999999986          567788889999999999999988 99999999


Q ss_pred             CcEEEEeCCCCce-------eEEeecccCCeEEEEeeC-CC-eEEEEeCCCcEEEEecCCCe----eeEEecCCCCeeEE
Q 010296          284 RTVKIWNAEDRAY-------ISTLFGHQSEVLTIDCLR-KE-RVLTVGRDRSMQLWKVPEES----RLVFRAPASSLECC  350 (513)
Q Consensus       284 g~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~-~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~  350 (513)
                      |.|++|++.++..       ...+.+|...|.+++|+| ++ .|++++.++.|++||+++..    ...+..|...|.++
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  283 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL  283 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred             CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence            9999999987322       455678999999999999 44 56688999999999998762    33566888999999


Q ss_pred             EeecCCe--EEEEeCCCCEEEEecCC-CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEE
Q 010296          351 CFISNDE--FLSGSDDGSIELWSLLR-KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSS  427 (513)
Q Consensus       351 ~~~~~~~--~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~  427 (513)
                      +|+|++.  |++|+.||.|++||+++ ..++..+..                                     |...|++
T Consensus       284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-------------------------------------h~~~v~~  326 (430)
T 2xyi_A          284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-------------------------------------HKDEIFQ  326 (430)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-------------------------------------CSSCEEE
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-------------------------------------CCCCEEE
Confidence            9999874  77999999999999998 455666542                                     3344999


Q ss_pred             EEEecCCC-EEEEecCCCcEEEEEeCCCCcc----------eeeee-ecCcccEEEEEEeecCCC-EEEEEecCCCcccc
Q 010296          428 VTVCGGSD-LAASGAGNGSVRLWAIESETKD----------IQPLY-NLPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLGR  494 (513)
Q Consensus       428 ~~~s~~~~-~l~~g~~dg~v~vwd~~~~~~~----------~~~~~-~~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~  494 (513)
                      ++|+|+++ +|++++.||.|+|||+......          ...+. ...|...|++++|+|+++ +|+++ +.||.|++
T Consensus       327 i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~-s~dg~i~i  405 (430)
T 2xyi_A          327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV-SEDNIMQV  405 (430)
T ss_dssp             EEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE-ETTSEEEE
T ss_pred             EEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE-ECCCCEEE
Confidence            99999985 7999999999999999873211          12222 223778899999999999 56666 89999999


Q ss_pred             cccCCC
Q 010296          495 WGHLPA  500 (513)
Q Consensus       495 W~~~~~  500 (513)
                      |++...
T Consensus       406 w~~~~~  411 (430)
T 2xyi_A          406 WQMAEN  411 (430)
T ss_dssp             EEECHH
T ss_pred             eEcccc
Confidence            987643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.2e-33  Score=267.82  Aligned_cols=251  Identities=14%  Similarity=0.108  Sum_probs=195.7

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEe-----------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSAS-----------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~-----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      .|.+|...|.+++++  +..+++|+           .|+++++|++........+....          .......+...
T Consensus        68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~  135 (365)
T 4h5i_A           68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSV----------DFDASTNADDY  135 (365)
T ss_dssp             ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEE----------CSSCCCCTTCC
T ss_pred             EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeee----------ceeecCCcccC
Confidence            466888899988775  45666654           47789999887654322111000          00112345566


Q ss_pred             EEEEEEcCCCCEEEEEe--CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE--
Q 010296          223 ILALAVSSDGRYLASGG--LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS--  298 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--  298 (513)
                      +.+++|||||++|++++  .|++|+|||+.+++++..+. |...|.+++|+|++++|++++.+ .+.+|+..++..+.  
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~  213 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARK  213 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeee
Confidence            89999999999987554  68999999999999998886 77899999999999999999854 56777777766553  


Q ss_pred             EeecccCCeEEEEeeCCCeEE-EEeCCC----cEEEEecCCCeee-----EEecCCCCeeEEEeecCCe-EEEEeCCCCE
Q 010296          299 TLFGHQSEVLTIDCLRKERVL-TVGRDR----SMQLWKVPEESRL-----VFRAPASSLECCCFISNDE-FLSGSDDGSI  367 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~~~~~~-~~~~d~----~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i  367 (513)
                      ....|...|.+++|+|++.++ +++.++    .+++|++......     .+..+...|.+++|+|+|. |++|+.|++|
T Consensus       214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V  293 (365)
T 4h5i_A          214 TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSI  293 (365)
T ss_dssp             CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEE
Confidence            345688899999999998654 677666    6888998765432     4567888999999999996 7799999999


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR  447 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~  447 (513)
                      +|||+.+++++..+.                                    .+|..+|++|+|||+|++||+|+.|++|+
T Consensus       294 ~iwd~~~~~~~~~~~------------------------------------~gH~~~V~~v~fSpdg~~laS~S~D~tvr  337 (365)
T 4h5i_A          294 ALVKLKDLSMSKIFK------------------------------------QAHSFAITEVTISPDSTYVASVSAANTIH  337 (365)
T ss_dssp             EEEETTTTEEEEEET------------------------------------TSSSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             EEEECCCCcEEEEec------------------------------------CcccCCEEEEEECCCCCEEEEEeCCCeEE
Confidence            999999999988875                                    34455599999999999999999999999


Q ss_pred             EEEeCCC
Q 010296          448 LWAIESE  454 (513)
Q Consensus       448 vwd~~~~  454 (513)
                      ||++...
T Consensus       338 vw~ip~~  344 (365)
T 4h5i_A          338 IIKLPLN  344 (365)
T ss_dssp             EEECCTT
T ss_pred             EEEcCCC
Confidence            9999765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=266.43  Aligned_cols=270  Identities=9%  Similarity=0.041  Sum_probs=210.6

Q ss_pred             EEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 010296          165 VALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHI  244 (513)
Q Consensus       165 ~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  244 (513)
                      ..+.+++.+|++|+.||+|++||+.+++.+..+                     ....|.++.|+|+   +++++.|++|
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~---------------------~~~~v~~~~~~~~---~~s~s~D~~i   97 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTI---------------------TTPNPRTGGEHPA---IISRGPCNRL   97 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEE---------------------EEECCCTTCCCCS---EEEECSTTEE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEE---------------------ecCCceeeeeCCc---eEEecCCCeE
Confidence            345568899999999999999999998877654                     1345777888887   9999999999


Q ss_pred             EEEeCC---------Ccceeeecc-CcCCCeEEEEEec--CCCeEEEEeCCCcEEEEeCCCCceeEEee-cccCCeEEEE
Q 010296          245 HLWDTR---------IQEHIQAFP-GHRGPVSCLTFRQ--GTSELFSGSFDRTVKIWNAEDRAYISTLF-GHQSEVLTID  311 (513)
Q Consensus       245 ~vwd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~  311 (513)
                      ++|+..         +++.+..+. .|...|.+++|+|  ++++|++++.||+|++||+.+++.+.... .+...+.+++
T Consensus        98 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~  177 (343)
T 3lrv_A           98 LLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV  177 (343)
T ss_dssp             EEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE
T ss_pred             EEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE
Confidence            999765         444444443 5778999999999  99999999999999999999998876653 3455899999


Q ss_pred             eeCCCeEE-EEeCCCcEEEEecCCCeee--EEec-CCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCC
Q 010296          312 CLRKERVL-TVGRDRSMQLWKVPEESRL--VFRA-PASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHP  386 (513)
Q Consensus       312 ~~~~~~~~-~~~~d~~i~iwd~~~~~~~--~~~~-~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  386 (513)
                      |+|++.++ +++.|+.|++||++++...  .+.. |...|.+++|+|++. |++++ ++.|++||+++++.+..+.... 
T Consensus       178 ~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~-  255 (343)
T 3lrv_A          178 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT-  255 (343)
T ss_dssp             ECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB-
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc-
Confidence            99998655 6789999999999988765  5666 889999999999997 56666 6699999999887654433210 


Q ss_pred             cccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE--EEEEEecCCCEEEEecC-CCcEEEEEeCCCCcceeeeee
Q 010296          387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV--SSVTVCGGSDLAASGAG-NGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       387 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~g~~-dg~v~vwd~~~~~~~~~~~~~  463 (513)
                                                       .+...+  .+++|+|++++|++++. |+.|+||++....+....   
T Consensus       256 ---------------------------------~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---  299 (343)
T 3lrv_A          256 ---------------------------------IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---  299 (343)
T ss_dssp             ---------------------------------C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---
T ss_pred             ---------------------------------cccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---
Confidence                                             001112  47999999999999988 999999999776333222   


Q ss_pred             cCcccEEEEEEeec---CCCEEEEEecCCCcccccccCCCc
Q 010296          464 LPLVGFVNSLAFAK---SGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       464 ~~~~~~v~~v~~sp---~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                          .++..++|+|   +...|+++ +.||.+.+|-.....
T Consensus       300 ----~~~~~~~~~~~~~~~~~l~~~-~~d~~~~~~~~~~~~  335 (343)
T 3lrv_A          300 ----DEESALCLQSDTADFTDMDVV-CGDGGIAAILKTNDS  335 (343)
T ss_dssp             ----EEEEECCC----CCCCEEEEE-EETTEEEEEEECSSE
T ss_pred             ----cCceeEecCccccccceeEEE-ecCCceEEEEecCCe
Confidence                6688999999   88999988 788899988554443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-33  Score=290.40  Aligned_cols=252  Identities=19%  Similarity=0.338  Sum_probs=210.2

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CcceeeeccCcCCCeEEEEEecC--CCeEEEEeCCCcEEEEe
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR--IQEHIQAFPGHRGPVSCLTFRQG--TSELFSGSFDRTVKIWN  290 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd  290 (513)
                      .+.+|...|++++|+|++++|++|+.||.|+||++.  ++..+..+.+|...|++++|+|+  +++|++|+.||.|++||
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            357899999999999999999999999999999997  66778889999999999999988  89999999999999999


Q ss_pred             CCCCc--eeEEeecccCCeEEEEeeCC--C-eEEEEeCCCcEEEEecCCCe---eeEEecCCCCeeEEEeecC-------
Q 010296          291 AEDRA--YISTLFGHQSEVLTIDCLRK--E-RVLTVGRDRSMQLWKVPEES---RLVFRAPASSLECCCFISN-------  355 (513)
Q Consensus       291 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~-------  355 (513)
                      +.+++  .+..+.+|...|.+++|+|+  + .+++++.||.|++||+....   ......|...|.+++|+|.       
T Consensus        84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~  163 (753)
T 3jro_A           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  163 (753)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred             CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence            99986  67778889999999999997  5 66799999999999998773   3467788899999999993       


Q ss_pred             ------C-eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296          356 ------D-EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV  428 (513)
Q Consensus       356 ------~-~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  428 (513)
                            + .+++|+.||.|++||++++..........                                 ..|...|+++
T Consensus       164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~---------------------------------~~h~~~V~~l  210 (753)
T 3jro_A          164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL---------------------------------EGHSDWVRDV  210 (753)
T ss_dssp             ---CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE---------------------------------CCCSSCEEEE
T ss_pred             cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee---------------------------------cCCCCcEEEE
Confidence                  4 58899999999999998874332211000                                 3445569999


Q ss_pred             EEecC---CCEEEEecCCCcEEEEEeCCCCcce--eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          429 TVCGG---SDLAASGAGNGSVRLWAIESETKDI--QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       429 ~~s~~---~~~l~~g~~dg~v~vwd~~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      +|+|+   +++|++|+.||.|++||+.++....  .......|.+.|++++|+|+|++|+++ +.||.|++|++...
T Consensus       211 ~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          211 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS-GGDNKVTLWKENLE  286 (753)
T ss_dssp             EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE-CSSSCEECCBCCSS
T ss_pred             EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE-cCCCEEEEEecCCC
Confidence            99999   8999999999999999998863221  112223377889999999999999999 88999999998753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.3e-32  Score=252.76  Aligned_cols=255  Identities=22%  Similarity=0.327  Sum_probs=215.8

Q ss_pred             cccCCCcccchhhh--hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC
Q 010296          142 RVQKPEATDEFRVL--LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ  219 (513)
Q Consensus       142 ~~~~~~~~~~~~~~--~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (513)
                      ++|+....+.++.+  .+|...|++++|+|++++|++|+.||+|++|++.+++.+..+                   .+|
T Consensus        48 ~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~-------------------~~h  108 (318)
T 4ggc_A           48 YLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-------------------TSH  108 (318)
T ss_dssp             EEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------------------ECC
T ss_pred             EEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-------------------cCc
Confidence            46777777666655  468889999999999999999999999999999999887654                   577


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc-ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce--
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ-EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY--  296 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--  296 (513)
                      ...+.++.+.  +.+|++++.++.+++|+.... ..+..+.+|...+..+.|++++++|++++.|+.|++||+.+++.  
T Consensus       109 ~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  186 (318)
T 4ggc_A          109 SARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW  186 (318)
T ss_dssp             SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS
T ss_pred             cceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc
Confidence            8778776654  679999999999999998765 45677888999999999999999999999999999999988653  


Q ss_pred             --eEEeecccCCeEEEEeeCCC-eEE---EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEE--EeCCCCE
Q 010296          297 --ISTLFGHQSEVLTIDCLRKE-RVL---TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLS--GSDDGSI  367 (513)
Q Consensus       297 --~~~~~~~~~~v~~~~~~~~~-~~~---~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~--~~~dg~i  367 (513)
                        ......+...|.++.+++.+ .++   +++.++.|++|+...........+...+..+.|++.+. +++  |+.|+.|
T Consensus       187 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i  266 (318)
T 4ggc_A          187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQL  266 (318)
T ss_dssp             CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred             cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEE
Confidence              34456678899999999864 332   45578999999999998888888888999999999875 443  4479999


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR  447 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~  447 (513)
                      +|||+.+++++..+.                                     +|...|++++|+|++++|++|+.||+|+
T Consensus       267 ~iwd~~~~~~~~~l~-------------------------------------gH~~~V~~l~~spdg~~l~S~s~D~~v~  309 (318)
T 4ggc_A          267 VIWKYPTMAKVAELK-------------------------------------GHTSRVLSLTMSPDGATVASAAADETLR  309 (318)
T ss_dssp             EEEETTTCCEEEEEC-------------------------------------CCSSCEEEEEECTTSSCEEEEETTTEEE
T ss_pred             EEEECCCCcEEEEEc-------------------------------------CCCCCEEEEEEcCCCCEEEEEecCCeEE
Confidence            999999999998884                                     3445599999999999999999999999


Q ss_pred             EEEeCCC
Q 010296          448 LWAIESE  454 (513)
Q Consensus       448 vwd~~~~  454 (513)
                      |||+.+.
T Consensus       310 iWd~~~~  316 (318)
T 4ggc_A          310 LWRCFEL  316 (318)
T ss_dssp             EECCSCC
T ss_pred             EEECCCC
Confidence            9999764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7e-33  Score=269.80  Aligned_cols=265  Identities=22%  Similarity=0.412  Sum_probs=210.6

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+.........+.+|.+.|++++|  ++++|++|+.||+|++||+.+++.+..+                   .+|...
T Consensus       157 iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~-------------------~~h~~~  215 (435)
T 1p22_A          157 IWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL-------------------IHHCEA  215 (435)
T ss_dssp             EEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE-------------------CCCCSC
T ss_pred             EEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEE-------------------cCCCCc
Confidence            5666777788889999999999999  7889999999999999999998877654                   578899


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCccee---eeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI---QAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST  299 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  299 (513)
                      |.+++|+  +.+|++|+.||.|++||+.++..+   ..+.+|...|.+++|  ++++|++++.||.|++||+.+++.+..
T Consensus       216 v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~  291 (435)
T 1p22_A          216 VLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT  291 (435)
T ss_dssp             EEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE
Confidence            9999997  459999999999999999988765   677889999999999  678999999999999999999999999


Q ss_pred             eecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC--
Q 010296          300 LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKK--  376 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~--  376 (513)
                      +.+|...|.++.+. +..+++++.|+.|++||+.++..+ .+..|...+.++++ ....+++|+.||.|++||+.++.  
T Consensus       292 ~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~  369 (435)
T 1p22_A          292 LNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDP  369 (435)
T ss_dssp             EECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEEHHHHTST
T ss_pred             EcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-cCCEEEEEeCCCcEEEEECCCCCCc
Confidence            99999999999995 467889999999999999988766 56778889999999 34468899999999999987655  


Q ss_pred             -------eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296          377 -------PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW  449 (513)
Q Consensus       377 -------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw  449 (513)
                             ++..+                                     ..|...|++++|  ++.+|++|+.||.|++|
T Consensus       370 ~~~~~~~~~~~~-------------------------------------~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iw  410 (435)
T 1p22_A          370 RAPAGTLCLRTL-------------------------------------VEHSGRVFRLQF--DEFQIVSSSHDDTILIW  410 (435)
T ss_dssp             TSCTTTTEEEEE-------------------------------------CCCSSCCCCEEE--CSSCEEECCSSSEEEEE
T ss_pred             cccccchheeec-------------------------------------cCCCCCeEEEEe--CCCEEEEEeCCCEEEEE
Confidence                   34443                                     334455899999  67899999999999999


Q ss_pred             EeCCCCcceeeeeecCcccEEEEEEeec
Q 010296          450 AIESETKDIQPLYNLPLVGFVNSLAFAK  477 (513)
Q Consensus       450 d~~~~~~~~~~~~~~~~~~~v~~v~~sp  477 (513)
                      |+.+.....    ..+...+..++.|.+
T Consensus       411 d~~~~~~~~----~~~~~~~~~~~~~~~  434 (435)
T 1p22_A          411 DFLNDPAAQ----AEPPRSPSRTYTYIS  434 (435)
T ss_dssp             C---------------------------
T ss_pred             ECCCCCCcc----cCCCCCCccceeeec
Confidence            998862221    112334555666554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=5.6e-33  Score=269.76  Aligned_cols=270  Identities=17%  Similarity=0.244  Sum_probs=208.6

Q ss_pred             hhhhccCCCeEEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          153 RVLLKHRQSVTAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      .....|.+.|++++|+|+ +.+|++++.+|.|+||++........         ..+...+...+.+|...|++++|+|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~~  192 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNPN  192 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECTT
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCCC
Confidence            345689999999999997 78999999999999999976311100         00001122245688999999999999


Q ss_pred             CC-EEEEEeCCCcEEEEeCCCcce-------eeeccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCC---ceeEE
Q 010296          232 GR-YLASGGLDRHIHLWDTRIQEH-------IQAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDR---AYIST  299 (513)
Q Consensus       232 ~~-~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~  299 (513)
                      +. +|++|+.||.|++|++.++..       ...+.+|...|.+++|+| ++.+|++++.||.|++||++++   +.+..
T Consensus       193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~  272 (430)
T 2xyi_A          193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT  272 (430)
T ss_dssp             STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred             CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence            88 999999999999999987322       456678999999999999 6778999999999999999987   56777


Q ss_pred             eecccCCeEEEEeeCCCe--EEEEeCCCcEEEEecCCCe--eeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecC
Q 010296          300 LFGHQSEVLTIDCLRKER--VLTVGRDRSMQLWKVPEES--RLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLL  373 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~  373 (513)
                      +..|...|++++|+|++.  +++++.|+.|++||++...  ...+..|...|.+++|+|++.  |++++.||.|+|||+.
T Consensus       273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred             eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence            888999999999999763  6689999999999998733  346677899999999999883  7899999999999998


Q ss_pred             CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EEEEecCCCcEEEEEeC
Q 010296          374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LAASGAGNGSVRLWAIE  452 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~v~vwd~~  452 (513)
                      .............                      +. ....+....|...|++++|+|+++ +|++++.||.|+||++.
T Consensus       353 ~~~~~~~~~~~~~----------------------~~-~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          353 KIGEEQSTEDAED----------------------GP-PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             GTTCCCCHHHHHH----------------------CC-TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             CCccccCcccccc----------------------CC-cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            7321100000000                      00 000000134556699999999999 89999999999999997


Q ss_pred             CC
Q 010296          453 SE  454 (513)
Q Consensus       453 ~~  454 (513)
                      ..
T Consensus       410 ~~  411 (430)
T 2xyi_A          410 EN  411 (430)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.8e-33  Score=262.07  Aligned_cols=246  Identities=13%  Similarity=0.165  Sum_probs=206.0

Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc---eeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeC-
Q 010296          217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE---HIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNA-  291 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~-  291 (513)
                      .+|...|++++|+|++.+|++++.||.|++|++.++.   ....+..|...|.+++|+|+++ +|++++.||.|++|++ 
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~   87 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence            4789999999999999999999999999999998877   3445557999999999999999 9999999999999999 


Q ss_pred             CCCceeEEeec--ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCC---------CeeeEEecCCCCeeEEEeecCCeEEE
Q 010296          292 EDRAYISTLFG--HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPE---------ESRLVFRAPASSLECCCFISNDEFLS  360 (513)
Q Consensus       292 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~  360 (513)
                      .+++. ..+.+  |...|.+++|+|...+++++.|+.|++||+.+         ...+....+...+.+++|++++ +++
T Consensus        88 ~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~  165 (342)
T 1yfq_A           88 GSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIV  165 (342)
T ss_dssp             SSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEE
T ss_pred             cCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-EEE
Confidence            77754 66778  99999999999955777999999999999987         5544444478899999999987 999


Q ss_pred             EeCCCCEEEEecCC-CCee-EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEE
Q 010296          361 GSDDGSIELWSLLR-KKPV-YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLA  437 (513)
Q Consensus       361 ~~~dg~i~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l  437 (513)
                      ++.++.|++||+.+ +... ....                                    ..+...|.+++|+| ++++|
T Consensus       166 ~~~d~~i~i~d~~~~~~~~~~~~~------------------------------------~~~~~~i~~i~~~~~~~~~l  209 (342)
T 1yfq_A          166 GMNNSQVQWFRLPLCEDDNGTIEE------------------------------------SGLKYQIRDVALLPKEQEGY  209 (342)
T ss_dssp             EESTTEEEEEESSCCTTCCCEEEE------------------------------------CSCSSCEEEEEECSGGGCEE
T ss_pred             EeCCCeEEEEECCccccccceeee------------------------------------cCCCCceeEEEECCCCCCEE
Confidence            99999999999988 5432 2222                                    22333499999999 99999


Q ss_pred             EEecCCCcEEEEEeCCC-----CcceeeeeecC-------cccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          438 ASGAGNGSVRLWAIESE-----TKDIQPLYNLP-------LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       438 ~~g~~dg~v~vwd~~~~-----~~~~~~~~~~~-------~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ++++.||.|+||++...     ......+....       |...|++++|+|++++|+++ +.||.|++|+...+.
T Consensus       210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA-GSDGIISCWNLQTRK  284 (342)
T ss_dssp             EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE-ETTSCEEEEETTTTE
T ss_pred             EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe-cCCceEEEEcCccHh
Confidence            99999999999999876     24444444321       23489999999999999999 899999999987654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.3e-33  Score=272.98  Aligned_cols=257  Identities=14%  Similarity=0.158  Sum_probs=196.1

Q ss_pred             ccCCCcc--cchhhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC
Q 010296          143 VQKPEAT--DEFRVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ  219 (513)
Q Consensus       143 ~~~~~~~--~~~~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (513)
                      +|+....  ..+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||+.++......                 ....+
T Consensus       146 lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-----------------~~~~~  208 (435)
T 4e54_B          146 LWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA-----------------SSDTI  208 (435)
T ss_dssp             EECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE-----------------CCSSC
T ss_pred             EEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe-----------------ccCCC
Confidence            4554433  23445678999999999998 6899999999999999999875443221                 11234


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCceeE
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      ...+.+++|+|++.+|++|+.||.|++||+. ++.+..+.+|...|++++|+|++. +|++++.|+.|++||+++.+...
T Consensus       209 ~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~  287 (435)
T 4e54_B          209 NIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA  287 (435)
T ss_dssp             SCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred             CccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence            5568899999999999999999999999986 566778899999999999999886 67799999999999998866443


Q ss_pred             E---eecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCC------CeeEEEeecCCe-EEEE-----
Q 010296          299 T---LFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPAS------SLECCCFISNDE-FLSG-----  361 (513)
Q Consensus       299 ~---~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~------~v~~~~~~~~~~-~~~~-----  361 (513)
                      .   ..+|...|.+++|+|++ .|++++.|+.|++|++.+.... .+..+..      .+..+.|+|.+. ++++     
T Consensus       288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  367 (435)
T 4e54_B          288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDP  367 (435)
T ss_dssp             CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred             eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCC
Confidence            3   35789999999999987 5669999999999999886654 2222221      122344555543 3333     


Q ss_pred             -------eCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE-EEecC
Q 010296          362 -------SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV-TVCGG  433 (513)
Q Consensus       362 -------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~  433 (513)
                             ..++.|++||..+++.+..+...+                                    ...|.++ +|+|+
T Consensus       368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~------------------------------------~~~v~s~~~fspd  411 (435)
T 4e54_B          368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPE------------------------------------SSGISSLNEFNPM  411 (435)
T ss_dssp             TSCCSSTTCCCCEEEECSSSCCEEEEECCSS------------------------------------CCCCCCEEEECTT
T ss_pred             CeEEEEecCCCEEEEEECCCCcEEEEEeCCC------------------------------------CCcEEEEEEECCC
Confidence                   234679999999999888775333                                    2337776 69999


Q ss_pred             CCEEEEecCCCcEEEEEeCCC
Q 010296          434 SDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       434 ~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      |++|++|+ |+.|+||++.++
T Consensus       412 g~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          412 GDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             SSCEEEEC-SSEEEECCCC--
T ss_pred             CCEEEEEc-CCcEEEEECCcC
Confidence            99999887 779999999886

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.2e-33  Score=271.42  Aligned_cols=257  Identities=13%  Similarity=0.213  Sum_probs=200.8

Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-----------eeeeccCcC------------CCeEEEEEecC
Q 010296          217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE-----------HIQAFPGHR------------GPVSCLTFRQG  273 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~  273 (513)
                      ..+...|++++|+|++.+||+|+.||.|+||++.++.           .+..+.+|.            ..|++++|+|+
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            3567899999999999999999999999999998877           577888998            88999999999


Q ss_pred             C--CeEEEEeCCCcEEEEeCCCCcee---------------------------------------EE-eecccCCeEEEE
Q 010296          274 T--SELFSGSFDRTVKIWNAEDRAYI---------------------------------------ST-LFGHQSEVLTID  311 (513)
Q Consensus       274 ~--~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~  311 (513)
                      +  .+|++++.|+.|++|++.++...                                       .. ..+|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  78999999999999998764431                                       12 357999999999


Q ss_pred             eeCCCeEEEEeCCCcEEEEecCCC-eeeE--------EecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCe---
Q 010296          312 CLRKERVLTVGRDRSMQLWKVPEE-SRLV--------FRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKKP---  377 (513)
Q Consensus       312 ~~~~~~~~~~~~d~~i~iwd~~~~-~~~~--------~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~---  377 (513)
                      |+|++.+++++.|+.|++||+... ....        +..|...|.+++|+|++  .|++++.||.|++||+++++.   
T Consensus       185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            999986664448999999999843 3333        34788899999999987  488999999999999999876   


Q ss_pred             -eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCc
Q 010296          378 -VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETK  456 (513)
Q Consensus       378 -~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~  456 (513)
                       +..+........ .                      .  ....|...|++++|+|++++|++++. |.|+|||+.....
T Consensus       265 ~~~~~~~~~~~~~-~----------------------~--~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~  318 (447)
T 3dw8_B          265 HSKLFEEPEDPSN-R----------------------S--FFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR  318 (447)
T ss_dssp             TCEEECCC------C----------------------C--HHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS
T ss_pred             eeeEeccCCCccc-c----------------------c--cccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc
Confidence             455543221000 0                      0  00112235999999999999999999 9999999987435


Q ss_pred             ceeeeeecCccc---------------EEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          457 DIQPLYNLPLVG---------------FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       457 ~~~~~~~~~~~~---------------~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      .+..+..  |..               .+..++|+|++++|+++ +.||.|++|++..+..
T Consensus       319 ~~~~~~~--~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~-s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          319 PVETYQV--HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTG-SYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             CSCCEES--CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEE-CSTTEEEEEETTTCCE
T ss_pred             ccceeec--cccccccccccccccccccceEEEECCCCCEEEEe-ccCCEEEEEEcCCCcc
Confidence            5554443  221               13459999999999888 9999999999887643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=4.7e-31  Score=253.33  Aligned_cols=266  Identities=12%  Similarity=0.098  Sum_probs=218.1

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL-ASGGLDRHIHLWDTR  250 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~  250 (513)
                      .++++++.|+.|++||+.+++.+..+                   .. ...+.+++|+|++++| ++++.++.|++||+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-------------------~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~   62 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATI-------------------PV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE-------------------EC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEe-------------------ec-CCCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence            35778899999999999998877654                   22 3458999999999977 677789999999999


Q ss_pred             CcceeeeccCcCCCeEEEEEecCCCeEEE-EeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-E-EEEeCCCcE
Q 010296          251 IQEHIQAFPGHRGPVSCLTFRQGTSELFS-GSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-V-LTVGRDRSM  327 (513)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~d~~i  327 (513)
                      +++.+..+..+. .+.+++|+|++++|++ ++.++.|++||+.+++.+..+.. ...+.+++|+|++. + ++++.++.|
T Consensus        63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v  140 (391)
T 1l0q_A           63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTV  140 (391)
T ss_dssp             TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEE
Confidence            999988887554 8999999999998865 45679999999999988887764 45789999999885 4 466679999


Q ss_pred             EEEecCCCeeeEEecCCCCeeEEEeecCCe-E-EEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296          328 QLWKVPEESRLVFRAPASSLECCCFISNDE-F-LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH  405 (513)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  405 (513)
                      ++||+.+++..........+.+++|+|++. + ++++.++.|++||+.+++.+..+...                     
T Consensus       141 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---------------------  199 (391)
T 1l0q_A          141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE---------------------  199 (391)
T ss_dssp             EEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---------------------
T ss_pred             EEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC---------------------
Confidence            999999988776555567789999999985 4 57788999999999999877766432                     


Q ss_pred             CCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec---CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEE
Q 010296          406 SENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA---GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFL  482 (513)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~---~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l  482 (513)
                                       ..+.+++|+|++++|++++   .++.|++||+.++ ..+..+.   ....+.+++|+|+|++|
T Consensus       200 -----------------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~---~~~~~~~~~~s~dg~~l  258 (391)
T 1l0q_A          200 -----------------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIP---VGPDPAGIAVTPDGKKV  258 (391)
T ss_dssp             -----------------SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEE---CCSSEEEEEECTTSSEE
T ss_pred             -----------------CCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-eEEEEEe---cCCCccEEEEccCCCEE
Confidence                             2389999999999999888   6899999999887 3333333   33457899999999999


Q ss_pred             EEEecCCCcccccccCCCc
Q 010296          483 IAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       483 ~~~~~~dg~v~~W~~~~~~  501 (513)
                      +++++.|+.|++|+...+.
T Consensus       259 ~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          259 YVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             EEEETTTTEEEEEETTTTE
T ss_pred             EEEcCCCCEEEEEECCCCc
Confidence            7766899999999987654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.3e-32  Score=261.97  Aligned_cols=255  Identities=14%  Similarity=0.105  Sum_probs=172.9

Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce-----eeeccCcCCCeEEEEEec--------CCCeEEEEeCCCc
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH-----IQAFPGHRGPVSCLTFRQ--------GTSELFSGSFDRT  285 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~  285 (513)
                      |...+....+++++.+|++++.|++|+|||+.++..     +..+.+|.+.|++++|+|        ++++|++++.|++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            344444555566778899999999999999987754     345789999999999998        7889999999999


Q ss_pred             EEEEeCCCCceeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeE------------------------
Q 010296          286 VKIWNAEDRAYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLV------------------------  339 (513)
Q Consensus       286 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~------------------------  339 (513)
                      |+|||+.++.++..+..|...+.+++|+|++  .+++++.|++|++||+.++....                        
T Consensus       168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence            9999999988888888899999999999976  46799999999999998764321                        


Q ss_pred             --EecCCCCeeEEEee-cCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCC
Q 010296          340 --FRAPASSLECCCFI-SNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGS  415 (513)
Q Consensus       340 --~~~~~~~v~~~~~~-~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  415 (513)
                        ...+...+.++.|+ +++. +++++.|+++++||+..++....+........... +......               
T Consensus       248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~-~~~~~~~---------------  311 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN-LLPNVQG---------------  311 (393)
T ss_dssp             ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C-CSCSEEE---------------
T ss_pred             eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE-Ecccccc---------------
Confidence              23456678888887 5664 88999999999999998876665543222111100 0000000               


Q ss_pred             cCCCCCcceEEEEEEec--CCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccc
Q 010296          416 YHSSSAYSWVSSVTVCG--GSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLG  493 (513)
Q Consensus       416 ~~~~~~~~~i~~~~~s~--~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~  493 (513)
                         ......+....|+|  ++.++++|+.||.|+|||+.++. ....+.  .|..+|++|+|+|||++||++ +.+| +.
T Consensus       312 ---~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~-~~~~~~--~~~~~V~svafspdG~~LA~a-s~~G-v~  383 (393)
T 4gq1_A          312 ---ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD-SNSIPI--QLGMPIVDFCWHQDGSHLAIA-TEGS-VL  383 (393)
T ss_dssp             ---ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT-CCEEEE--ECSSCEEEEEECTTSSEEEEE-ESSE-EE
T ss_pred             ---ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc-EEEEec--CCCCcEEEEEEcCCCCEEEEE-eCCC-eE
Confidence               00111122334444  44577888999999999999873 333333  367899999999999999998 6665 44


Q ss_pred             cccc
Q 010296          494 RWGH  497 (513)
Q Consensus       494 ~W~~  497 (513)
                      +|.+
T Consensus       384 lvrL  387 (393)
T 4gq1_A          384 LTRL  387 (393)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.5e-30  Score=244.87  Aligned_cols=247  Identities=19%  Similarity=0.298  Sum_probs=199.0

Q ss_pred             CCCCCcccEEEEEEcCC---CCEEEEEeCCCcEEEEeCCC-ccee-eeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEE
Q 010296          215 RATKQSKHILALAVSSD---GRYLASGGLDRHIHLWDTRI-QEHI-QAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIW  289 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~---~~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  289 (513)
                      .+.+|...|++++|+|+   |++|++|+.||.|++|++.+ +..+ ..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  113 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW  113 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence            35789999999999999   69999999999999999987 5544 7788899999999999999999999999999999


Q ss_pred             eCCCCceeEEeecccCCeEEEEe--eCCCe-EEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCC
Q 010296          290 NAEDRAYISTLFGHQSEVLTIDC--LRKER-VLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGS  366 (513)
Q Consensus       290 d~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~  366 (513)
                      |+.+++.+. +..|...|.+++|  ++++. +++++.|+.|++||+.++...........+.++.+.+. .+++++.++.
T Consensus       114 d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  191 (368)
T 3mmy_A          114 DLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP-MAVVATAERG  191 (368)
T ss_dssp             ETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT-EEEEEEGGGC
T ss_pred             EcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC-eeEEEeCCCc
Confidence            999988776 4569999999999  77775 66899999999999998877755555567777777654 6778889999


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCE----EEEecC
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDL----AASGAG  442 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~g~~  442 (513)
                      +++|++...........                                   ......+.++++.++...    +++++.
T Consensus       192 i~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          192 LIVYQLENQPSEFRRIE-----------------------------------SPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             EEEEECSSSCEEEEECC-----------------------------------CSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             EEEEEeccccchhhhcc-----------------------------------ccccCCCceEEEcccCCCCCCeEEEecC
Confidence            99999987654433321                                   111122666666665554    999999


Q ss_pred             CCcEEEEEeCCCCc--ceeeeeecCccc------------EEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          443 NGSVRLWAIESETK--DIQPLYNLPLVG------------FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       443 dg~v~vwd~~~~~~--~~~~~~~~~~~~------------~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ||.|++|++.....  ....+..  |..            .|++++|+|++++|+++ +.||.|++|++..+.
T Consensus       237 dg~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-~~dg~i~iwd~~~~~  306 (368)
T 3mmy_A          237 EGRVAIHYINPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV-GSDGRFSFWDKDART  306 (368)
T ss_dssp             TSEEEEEESSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEE-ETTSCEEEEETTTTE
T ss_pred             CCcEEEEecCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEE-ccCCeEEEEECCCCc
Confidence            99999999987632  1222222  333            69999999999999999 899999999987654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.5e-29  Score=242.94  Aligned_cols=295  Identities=11%  Similarity=0.032  Sum_probs=226.9

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeE-EEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKG-FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      +|+....+.+..+..|. .+.+++|+|++++| ++++.|++|++||+.+++.+..+                    .+..
T Consensus        16 v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~--------------------~~~~   74 (391)
T 1l0q_A           16 VIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV--------------------PAGS   74 (391)
T ss_dssp             EEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE--------------------ECSS
T ss_pred             EEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE--------------------ECCC
Confidence            45555566666676664 58999999999987 57778999999999998877654                    2233


Q ss_pred             cEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeE-EEEeCCCcEEEEeCCCCceeEE
Q 010296          222 HILALAVSSDGRYLASG-GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSEL-FSGSFDRTVKIWNAEDRAYIST  299 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~  299 (513)
                      .+.+++|+|++++|+++ +.++.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+.+++.+..
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            79999999999987654 46799999999999988887744 578999999999987 6788899999999999998888


Q ss_pred             eecccCCeEEEEeeCCCe-E-EEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe---CCCCEEEEecC
Q 010296          300 LFGHQSEVLTIDCLRKER-V-LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS---DDGSIELWSLL  373 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~~~~-~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~---~dg~i~iwd~~  373 (513)
                      +..+ ..+.+++|+|++. + ++++.++.|++||+.++.......+...+.+++|+|++. +++++   .++.|++||+.
T Consensus       154 ~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             EecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            7754 5579999999884 4 356678999999999988876666777899999999985 55665   68999999999


Q ss_pred             CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE-EEecCCCcEEEEEeC
Q 010296          374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA-ASGAGNGSVRLWAIE  452 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~g~~dg~v~vwd~~  452 (513)
                      +++++..+.....                                      +.+++|+|++++| ++++.|+.|++||+.
T Consensus       233 ~~~~~~~~~~~~~--------------------------------------~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          233 TNKITARIPVGPD--------------------------------------PAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             TTEEEEEEECCSS--------------------------------------EEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEEecCCC--------------------------------------ccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            9988877754221                                      7899999999877 677889999999998


Q ss_pred             CCCcceeeeeecCcccEE---------------EEEEeecCC---------CEEEEEecCCCcccccccCCCc
Q 010296          453 SETKDIQPLYNLPLVGFV---------------NSLAFAKSG---------QFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v---------------~~v~~sp~~---------~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ++ ..+..+..  +..+.               ....|+.+.         ...++..+.+..+++|+...+.
T Consensus       275 ~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~  344 (391)
T 1l0q_A          275 TN-TITATMAV--GKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS  344 (391)
T ss_dssp             TT-EEEEEEEC--SSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred             CC-cEEEEEEC--CcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence            87 33333321  11111               112233322         1445555778899999986543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=2.5e-30  Score=244.21  Aligned_cols=253  Identities=13%  Similarity=0.127  Sum_probs=183.0

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeE-EEEeCCCcEEEEeCCCC
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSEL-FSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~  294 (513)
                      ...|...|++++|+|+|++|++|+.++ ++||++.+++.+....  ...+..+++.++++.+ ++++.|++|++||+.++
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~   91 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK   91 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence            367899999999999999999998765 7899998877665543  2357888999988887 46778899999999999


Q ss_pred             ceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCC-eee-EEecCCCCeeEEEeecCCeEEE--EeCCCCEEEE
Q 010296          295 AYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEE-SRL-VFRAPASSLECCCFISNDEFLS--GSDDGSIELW  370 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~--~~~dg~i~iw  370 (513)
                      +++..+. +...|.++.++++..++  +.++.|++|++.+. +.+ .+..   ....+++++ ..+++  |+.+|.|++|
T Consensus        92 ~~~~~~~-~~~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v~iw  164 (355)
T 3vu4_A           92 QDVSRIK-VDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEFNLGQIHIT  164 (355)
T ss_dssp             EEEEEEE-CSSCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEEESSCTTCEEEE
T ss_pred             cEEEEEE-CCCceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEeCCCcCcEEEEE
Confidence            9988886 67799999998765433  34789999999887 433 2222   344556666 55554  6899999999


Q ss_pred             ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc-EEEE
Q 010296          371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS-VRLW  449 (513)
Q Consensus       371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-v~vw  449 (513)
                      |+.++...........                     ...+.+.......|...|++++|+|+|++|++|+.||+ |+||
T Consensus       165 d~~~~~~~~~~~~~~~---------------------~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          165 KLQSSGSATTQDQGVQ---------------------QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF  223 (355)
T ss_dssp             ECCC---------------------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred             ECCCCCcccccccccc---------------------ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            9988652211100000                     00000000001456677999999999999999999998 9999


Q ss_pred             EeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          450 AIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       450 d~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      |+.++ ..+..+..-.|.+.|++++|+|+|++|+++ +.|++|++|++....
T Consensus       224 d~~~~-~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~-s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          224 KTEDG-VLVREFRRGLDRADVVDMKWSTDGSKLAVV-SDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             ETTTC-CEEEEEECTTCCSCEEEEEECTTSCEEEEE-ETTCEEEEEESSCCS
T ss_pred             ECCCC-cEEEEEEcCCCCCcEEEEEECCCCCEEEEE-ECCCEEEEEEccCCC
Confidence            99987 344444322278899999999999999999 899999999987653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.7e-30  Score=245.95  Aligned_cols=243  Identities=8%  Similarity=0.029  Sum_probs=188.2

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc-----cEEEEEEcCC
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK-----HILALAVSSD  231 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~  231 (513)
                      +|...|.+++|||+|.+||+++.||.|+||+..+  .+..+                   . |..     .|.+++|||+
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l-------------------~-~~~~~~~~sv~svafSPD  140 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL-------------------D-SKGNLSSRTYHCFEWNPI  140 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC-------------------C-CSSCSTTTCEEEEEECSS
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec-------------------c-CCCccccccEEEEEEcCC
Confidence            5689999999999999999999999999999654  32222                   2 333     5999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcce-------eeec----cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce---e
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEH-------IQAF----PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY---I  297 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~  297 (513)
                      |++||+|+.||+|+||++.++..       +.++    .+|...|.+++|+|+|  +++++.|++|++|++.++..   .
T Consensus       141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~  218 (588)
T 2j04_A          141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVS  218 (588)
T ss_dssp             SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCE
T ss_pred             CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccce
Confidence            99999999999999999998753       5665    6688899999999999  88999999999999988774   3


Q ss_pred             EEe-ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeE-EecCCCCeeEEEe--ecCCe-EEEEeCCCCEEEEec
Q 010296          298 STL-FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLV-FRAPASSLECCCF--ISNDE-FLSGSDDGSIELWSL  372 (513)
Q Consensus       298 ~~~-~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~--~~~~~-~~~~~~dg~i~iwd~  372 (513)
                      .++ .+|...|.+++|+ +..+++++ ++.|++|++.++.... ..+|...+..+.|  +|++. +++++.+|+ ++|..
T Consensus       219 ~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          219 RMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             EEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             eeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence            456 4788899999999 55666665 7999999999988844 4489999999999  99996 778888999 99998


Q ss_pred             CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296          373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA  441 (513)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  441 (513)
                      ..   +. +.......    ..  .+..+..+......+.     ...+...|.+++|||+|+++|+++
T Consensus       296 d~---~~-~spd~~l~----a~--~d~~v~lW~~~g~~l~-----~~~~~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          296 DE---LH-VTADNIIA----PY--LEKKFKKWSTIWNEFN-----NYETTLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             SS---EE-EECCCSSH----HH--HHHHHHHTTTTTTSSS-----SSCCEEEEEEEEECTTSSEEEEEE
T ss_pred             cc---EE-ECCCceEE----EE--cCCEEEEEECCCCcee-----eeccceEEEEEEECCCCCEEEEEE
Confidence            72   22 33222111    11  1344444433222211     122356699999999999999886

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-29  Score=248.45  Aligned_cols=245  Identities=16%  Similarity=0.112  Sum_probs=198.6

Q ss_pred             hhhccCCCeEEEEECCCCCeE-EEEeCCceEEEEeCC--CCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          154 VLLKHRQSVTAVALSEDDSKG-FSASKDGSILHWDVS--SGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l-~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ...+|.+.|++++|+|++++| ++|+.||.|+||++.  ++..+..+                 ....|...|++++|+|
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-----------------~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-----------------KRFCFSKRPNAISIAE  159 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-----------------EEEECSSCEEEEEECT
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-----------------ecccCCCCceEEEEcC
Confidence            345789999999999999996 899999999999998  77666543                 1125678899999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceee----eccCcCCCeEEEEEecC---CCeEEEEeCCCcEEEEeCCCCceeEE-eec
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQ----AFPGHRGPVSCLTFRQG---TSELFSGSFDRTVKIWNAEDRAYIST-LFG  302 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~  302 (513)
                      ++++|++|+.+|.|++|++.++....    .+.+|...|++++|+|+   +++|++++.|+.|++||+.+++.+.. +.+
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence            99999999999999999998877554    77889999999999999   99999999999999999999988877 568


Q ss_pred             ccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEe--------------------------cCCCCeeEEEeecC
Q 010296          303 HQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFR--------------------------APASSLECCCFISN  355 (513)
Q Consensus       303 ~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~--------------------------~~~~~v~~~~~~~~  355 (513)
                      |...|.+++|+ ++ .+++++.|+.|++||+.++..+...                          .....+..++|+|+
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  318 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN  318 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence            99999999999 76 5669999999999999988765322                          12356889999998


Q ss_pred             Ce-EEEEe-CCCCEEEEec--CCC---CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296          356 DE-FLSGS-DDGSIELWSL--LRK---KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV  428 (513)
Q Consensus       356 ~~-~~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  428 (513)
                      +. +++++ .++.|+||++  ..+   +.+..+...                                      ..|.++
T Consensus       319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--------------------------------------~~v~~~  360 (450)
T 2vdu_B          319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--------------------------------------YNVISL  360 (450)
T ss_dssp             SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--------------------------------------SCEEEE
T ss_pred             CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--------------------------------------CceEEE
Confidence            86 56666 8999999999  555   444444322                                      339999


Q ss_pred             EEecCCCEEEEecC------CCcEEEEEeCCC
Q 010296          429 TVCGGSDLAASGAG------NGSVRLWAIESE  454 (513)
Q Consensus       429 ~~s~~~~~l~~g~~------dg~v~vwd~~~~  454 (513)
                      +|+|++.++++++.      +..|.||.+...
T Consensus       361 ~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          361 SAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             EEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             EecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence            99996544444443      556899998754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=4.4e-31  Score=253.01  Aligned_cols=245  Identities=13%  Similarity=0.092  Sum_probs=176.1

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-----
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-----  230 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----  230 (513)
                      ..|...+....+++++.+|++|+.|++|+|||+.++......              +...+.+|...|++|+|+|     
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~--------------~~~~~~gH~~~v~~v~~~p~~~~~  151 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH--------------VLGGKSGHHNFVNDIDIADVYSAD  151 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEE--------------EECTTTSCSSCEEEEEEEEEECTT
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceee--------------eecccCCCCCceEEEEEccccccc
Confidence            345666666677778889999999999999999887654311              1123578999999999998     


Q ss_pred             ---CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCceeEE-------
Q 010296          231 ---DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAYIST-------  299 (513)
Q Consensus       231 ---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-------  299 (513)
                         ++++||+|+.|++|+|||+.++..+..+..|...|.+++|+|++. +|++++.|++|++||+++++....       
T Consensus       152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~  231 (393)
T 4gq1_A          152 NRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV  231 (393)
T ss_dssp             CSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C
T ss_pred             cCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc
Confidence               789999999999999999998888888888999999999999875 799999999999999988754322       


Q ss_pred             ------------------eecccCCeEEEEee-CCC-eEEEEeCCCcEEEEecCCCeee-EEecCC--------------
Q 010296          300 ------------------LFGHQSEVLTIDCL-RKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPA--------------  344 (513)
Q Consensus       300 ------------------~~~~~~~v~~~~~~-~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~--------------  344 (513)
                                        ..+|...+.++.|. +++ .+++++.|+++++||+...... .+..+.              
T Consensus       232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~  311 (393)
T 4gq1_A          232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQG  311 (393)
T ss_dssp             SCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEE
T ss_pred             ccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccc
Confidence                              13567788899987 566 5668999999999999765432 111111              


Q ss_pred             ----CCeeEEEeec--CCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcC
Q 010296          345 ----SSLECCCFIS--NDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYH  417 (513)
Q Consensus       345 ----~~v~~~~~~~--~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  417 (513)
                          .....+.+.+  ++. +++|+.||.|+|||+.+++++..+...                                 
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~---------------------------------  358 (393)
T 4gq1_A          312 ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL---------------------------------  358 (393)
T ss_dssp             ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC---------------------------------
T ss_pred             ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC---------------------------------
Confidence                1122223333  334 457788999999999999887766432                                 


Q ss_pred             CCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          418 SSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       418 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                          ..+|.+++|+|+|++||+++.+| |.+|.+.
T Consensus       359 ----~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          359 ----GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ----SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             ----CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence                23499999999999999999776 7777664

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=5.8e-30  Score=241.31  Aligned_cols=258  Identities=16%  Similarity=0.170  Sum_probs=185.1

Q ss_pred             cchhhhhccCCCeEEEEECC--CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          150 DEFRVLLKHRQSVTAVALSE--DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      .....+.+|...|++++|+|  ++.+|++|+.||+|++||+.++........          ..+...+..|...|.+++
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~~~  117 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRR----------WNKLCTLNDSKGSLYSVK  117 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCS----------EEEEEEECCCSSCEEEEE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccC----------cceeeeecccCCceeEEE
Confidence            45667789999999999999  699999999999999999988743210000          000112357889999999


Q ss_pred             EcCC--CCEEEEEeCCCcEEEEeCCCcceeeecc-------------CcCCCeEEEEEecC---CCeEEEEeCCCcEEEE
Q 010296          228 VSSD--GRYLASGGLDRHIHLWDTRIQEHIQAFP-------------GHRGPVSCLTFRQG---TSELFSGSFDRTVKIW  289 (513)
Q Consensus       228 ~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw  289 (513)
                      |+|+  +.+|++++.||.|++||+.+++.+..+.             .|...+.+++|+|+   +.+|++++.++.+.+|
T Consensus       118 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~  197 (351)
T 3f3f_A          118 FAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQ  197 (351)
T ss_dssp             ECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEE
T ss_pred             EcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEE
Confidence            9999  9999999999999999999887655443             58889999999997   8999999999999888


Q ss_pred             eCCCCce--eEEeecccCCeEEEEeeCCC-----eEEEEeCCCcEEEEecCCCeeeEE-ecCCCCeeEEEeecCCe----
Q 010296          290 NAEDRAY--ISTLFGHQSEVLTIDCLRKE-----RVLTVGRDRSMQLWKVPEESRLVF-RAPASSLECCCFISNDE----  357 (513)
Q Consensus       290 d~~~~~~--~~~~~~~~~~v~~~~~~~~~-----~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~----  357 (513)
                      +...+..  +..+.+|...|.+++|+|++     .+++++.|+.|++||+........ .............+...    
T Consensus       198 ~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (351)
T 3f3f_A          198 RGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQ  277 (351)
T ss_dssp             ECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------
T ss_pred             ccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccc
Confidence            8887765  66778899999999999986     566999999999999987544321 11222222222222222    


Q ss_pred             -EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCE
Q 010296          358 -FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDL  436 (513)
Q Consensus       358 -~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  436 (513)
                       ...+.....+.+|+....+++..+.                                     .|...|++++|+|++++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~h~~~v~~~~~s~~~~~  320 (351)
T 3f3f_A          278 GRSDSNTEEKAELQSNLQVELLSEHD-------------------------------------DHNGEVWSVSWNLTGTI  320 (351)
T ss_dssp             -------------CCSEEEEEEEEEC-------------------------------------TTSSCEEEEEECSSSCC
T ss_pred             cccccccceeeeecccccccEEEEEe-------------------------------------cccccEEEEEEcCCCCE
Confidence             1223344455666655555555553                                     34455999999999999


Q ss_pred             EEEecCCCcEEEEEeCCC
Q 010296          437 AASGAGNGSVRLWAIESE  454 (513)
Q Consensus       437 l~~g~~dg~v~vwd~~~~  454 (513)
                      |++|+.||.|+||++.++
T Consensus       321 l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          321 LSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             EEEEETTSCEEEEEECTT
T ss_pred             EEEecCCCcEEEEecCcC
Confidence            999999999999999987

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-30  Score=244.92  Aligned_cols=234  Identities=8%  Similarity=0.031  Sum_probs=183.0

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC---------CCce
Q 010296          226 LAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE---------DRAY  296 (513)
Q Consensus       226 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~  296 (513)
                      ..+.+++.+|++|+.||.|++||+.+++.+..+.  ...|.++.|+|.   +++++.|++|++|+..         +++.
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            3445678899999999999999999999888776  567888889887   9999999999999765         4444


Q ss_pred             eEEee-cccCCeEEEEeeC--CC-eEEEEeCCCcEEEEecCCCeeeEEe--cCCCCeeEEEeecCCe-EEEEeCCCCEEE
Q 010296          297 ISTLF-GHQSEVLTIDCLR--KE-RVLTVGRDRSMQLWKVPEESRLVFR--APASSLECCCFISNDE-FLSGSDDGSIEL  369 (513)
Q Consensus       297 ~~~~~-~~~~~v~~~~~~~--~~-~~~~~~~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~-~~~~~~dg~i~i  369 (513)
                      +..+. +|...|.+++|+|  ++ .+++++.|+.|++||+.++......  .+...+.+++|+|++. |++|+.||.|+|
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            44443 5678899999999  77 4558999999999999988876433  4455799999999996 668899999999


Q ss_pred             EecCCCCee-EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEE
Q 010296          370 WSLLRKKPV-YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRL  448 (513)
Q Consensus       370 wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~v  448 (513)
                      ||+++++.+ ..+..                                    .|..+|++++|+|++.+|++++ ++.|+|
T Consensus       197 wd~~~~~~~~~~~~~------------------------------------~h~~~v~~l~fs~~g~~l~s~~-~~~v~i  239 (343)
T 3lrv_A          197 YNLSSPDQASSRFPV------------------------------------DEEAKIKEVKFADNGYWMVVEC-DQTVVC  239 (343)
T ss_dssp             EESSCTTSCCEECCC------------------------------------CTTSCEEEEEECTTSSEEEEEE-SSBEEE
T ss_pred             EECCCCCCCccEEec------------------------------------cCCCCEEEEEEeCCCCEEEEEe-CCeEEE
Confidence            999998876 55542                                    2445599999999999999999 559999


Q ss_pred             EEeCCCCcceeeeeec-CcccEE--EEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          449 WAIESETKDIQPLYNL-PLVGFV--NSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       449 wd~~~~~~~~~~~~~~-~~~~~v--~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      ||+++.. .+..+..+ .+...+  .+++|+|+|++|+++++.|+.|++|++....+
T Consensus       240 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          240 FDLRKDV-GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             EETTSST-TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEcCCCC-cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence            9998873 32222221 122333  46999999999999955599999998866544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2.2e-29  Score=226.63  Aligned_cols=252  Identities=13%  Similarity=0.080  Sum_probs=175.9

Q ss_pred             ccCCCcc---cchhhhhccCCCeEEEEECCCCCeEEEEe-CC-ceEEEEeCC--CC--ccccccCCChhhhccCCCCCCC
Q 010296          143 VQKPEAT---DEFRVLLKHRQSVTAVALSEDDSKGFSAS-KD-GSILHWDVS--SG--KGVKYLWPSEEVLKSHGAKDPQ  213 (513)
Q Consensus       143 ~~~~~~~---~~~~~~~~h~~~V~~~~~s~~~~~l~t~~-~d-g~v~iwd~~--~~--~~~~~~~~~~~~~~~~~~~~~~  213 (513)
                      +|.+...   .+++++..|..+|..|.|.||-.-|++.. .. ..-.|+-+.  ..  .....+                
T Consensus        67 lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l----------------  130 (356)
T 2w18_A           67 LWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL----------------  130 (356)
T ss_dssp             EEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEE----------------
T ss_pred             EcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEE----------------
Confidence            4554444   88999999999999999999654333221 11 001111111  00  000000                


Q ss_pred             CCCCCCcccEEEEEEcCCCCEEEEEe--CCCcEEEEeC-CCcceeeeccCcCCCeEEEEEec---CCCeEEEEeCCCcEE
Q 010296          214 GRATKQSKHILALAVSSDGRYLASGG--LDRHIHLWDT-RIQEHIQAFPGHRGPVSCLTFRQ---GTSELFSGSFDRTVK  287 (513)
Q Consensus       214 ~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~  287 (513)
                       ...+|...|..+   ++++++.+++  .++.|++|++ .+++.+..+.+|...+..++|++   ++.+|++++.|++|+
T Consensus       131 -~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk  206 (356)
T 2w18_A          131 -LKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIV  206 (356)
T ss_dssp             -EEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEE
T ss_pred             -EeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEE
Confidence             012233334443   4555555543  5999999999 55888888889999999999999   779999999999999


Q ss_pred             EEeCCCCceeEEeecccC---CeEEEEeeCCCeEE-------------EEeCCCcEEEEecCCCeeeEEe------cCCC
Q 010296          288 IWNAEDRAYISTLFGHQS---EVLTIDCLRKERVL-------------TVGRDRSMQLWKVPEESRLVFR------APAS  345 (513)
Q Consensus       288 iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~-------------~~~~d~~i~iwd~~~~~~~~~~------~~~~  345 (513)
                      |||+.+++++.++.+|..   .+.+++|+|++.++             +++.|++|++||..++..+...      +|..
T Consensus       207 IWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~  286 (356)
T 2w18_A          207 IWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG  286 (356)
T ss_dssp             EEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC
T ss_pred             EEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc
Confidence            999999999999986543   57778999998653             5678999999999988765322      3333


Q ss_pred             CeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296          346 SLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV  425 (513)
Q Consensus       346 ~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  425 (513)
                      .+.+..++ ...+++++.|++|+|||+.+++++.++..++..                                    .+
T Consensus       287 ~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~------------------------------------vv  329 (356)
T 2w18_A          287 RFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ------------------------------------HW  329 (356)
T ss_dssp             CEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--C------------------------------------CC
T ss_pred             eeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC------------------------------------eE
Confidence            33333333 224779999999999999999999998643321                                    14


Q ss_pred             EEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          426 SSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       426 ~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      .+++|+|+|++|++|+.|++|+|||+
T Consensus       330 s~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          330 SFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCcEEEecC
Confidence            56899999999999999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=4.7e-28  Score=235.75  Aligned_cols=241  Identities=10%  Similarity=0.075  Sum_probs=204.4

Q ss_pred             hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296          154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR  233 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  233 (513)
                      .+.+|.+.|.+++|+|++.++++++.|+.|++||+.+++.+..+                   ..|...+.+++|+|+++
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~  224 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV-------------------DLTGKWSKILLYDPIRD  224 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE-------------------ECSSSSEEEEEEETTTT
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE-------------------cCCCCCeeEEEEcCCCC
Confidence            56789999999999999999999999999999999988776644                   46778899999999999


Q ss_pred             EEEE-EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe--------CCCcEEEEeCCCCceeEEeeccc
Q 010296          234 YLAS-GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS--------FDRTVKIWNAEDRAYISTLFGHQ  304 (513)
Q Consensus       234 ~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~  304 (513)
                      ++++ ++.++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++        .|+.|++||+.+++.+..+ .+.
T Consensus       225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~  302 (433)
T 3bws_A          225 LVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPP  302 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEE
T ss_pred             EEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCC
Confidence            8854 457999999999999988888754 4599999999999999887        4889999999998877665 366


Q ss_pred             CCeEEEEeeCCC-eEE-EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeC---------------CCC
Q 010296          305 SEVLTIDCLRKE-RVL-TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSD---------------DGS  366 (513)
Q Consensus       305 ~~v~~~~~~~~~-~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~---------------dg~  366 (513)
                      ..+.+++|+|++ .++ +++.++.|++|++.++.......+...+.+++|+|++. +++++.               ||.
T Consensus       303 ~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~  382 (433)
T 3bws_A          303 GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK  382 (433)
T ss_dssp             ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE
Confidence            688999999988 454 55789999999999888776666778899999999996 556555               579


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CCc
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NGS  445 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~  445 (513)
                      |++||+.+++.+..+....                                      .+.+++|+|+|++|++++. |+.
T Consensus       383 v~~~d~~~~~~~~~~~~~~--------------------------------------~~~~~~~s~dg~~l~~~~~~d~~  424 (433)
T 3bws_A          383 VYVIDTTTDTVKEFWEAGN--------------------------------------QPTGLDVSPDNRYLVISDFLDHQ  424 (433)
T ss_dssp             EEEEETTTTEEEEEEECSS--------------------------------------SEEEEEECTTSCEEEEEETTTTE
T ss_pred             EEEEECCCCcEEEEecCCC--------------------------------------CCceEEEcCCCCEEEEEECCCCe
Confidence            9999999998888775421                                      2899999999999988764 999


Q ss_pred             EEEEEeCC
Q 010296          446 VRLWAIES  453 (513)
Q Consensus       446 v~vwd~~~  453 (513)
                      |++|++..
T Consensus       425 i~v~~~~~  432 (433)
T 3bws_A          425 IRVYRRDG  432 (433)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEecC
Confidence            99999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=9.1e-28  Score=216.10  Aligned_cols=273  Identities=14%  Similarity=0.095  Sum_probs=171.8

Q ss_pred             eEEEEECCCCC---eEEEEeCCceEEEEeCCCC---ccccccCCChh-hhccCCCCCCC-----CCCCCCcccEEEEEEc
Q 010296          162 VTAVALSEDDS---KGFSASKDGSILHWDVSSG---KGVKYLWPSEE-VLKSHGAKDPQ-----GRATKQSKHILALAVS  229 (513)
Q Consensus       162 V~~~~~s~~~~---~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~v~~~~~s  229 (513)
                      +.++.|-.-+-   .+++++. .+|++|+..++   +.++++..... .+.........     ..-.-+...|.+|+|+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            55666654433   5667775 78999999988   44444311110 00000000000     0001123345555556


Q ss_pred             CC----CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe--CCCcEEEEeC-CCCceeEEeec
Q 010296          230 SD----GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS--FDRTVKIWNA-EDRAYISTLFG  302 (513)
Q Consensus       230 ~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~  302 (513)
                      |+    +.++++++.  .+.+|++                      ++++++.+++  .|+.|++|++ .+++.+..+.+
T Consensus       121 pd~~~~~~~l~s~g~--~~~v~~l----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~  176 (356)
T 2w18_A          121 SDDESEKQVLLKSGN--IKAVLGL----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL  176 (356)
T ss_dssp             -----CCEEEEEEEE--EEEEEEE----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE
T ss_pred             CCccccccEEEeCCC--eEEEEec----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeecc
Confidence            55    555555542  2444533                      3444444433  5888888888 44777777888


Q ss_pred             ccCCeEEEEeeC---CC-eEEEEeCCCcEEEEecCCCeee-EEecCC---CCeeEEEeecCCeE-------------EEE
Q 010296          303 HQSEVLTIDCLR---KE-RVLTVGRDRSMQLWKVPEESRL-VFRAPA---SSLECCCFISNDEF-------------LSG  361 (513)
Q Consensus       303 ~~~~v~~~~~~~---~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~---~~v~~~~~~~~~~~-------------~~~  361 (513)
                      |...+..++|++   ++ .+++++.|++|++||+.+++.+ .+..+.   ..+.+++|+|++.+             ++|
T Consensus       177 ~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG  256 (356)
T 2w18_A          177 MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR  256 (356)
T ss_dssp             CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----------
T ss_pred             CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc
Confidence            999999999988   44 5668899999999999998876 444433   36777899999963             457


Q ss_pred             eCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296          362 SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA  441 (513)
Q Consensus       362 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  441 (513)
                      +.|++|++||..+++.+..+....+                                .+|...+.+..++  +.++++|+
T Consensus       257 s~D~tIklWd~~tgk~l~v~~~~~p--------------------------------~Gh~~~~lsg~~s--g~~lASgS  302 (356)
T 2w18_A          257 SPVFQLIVINPKTTLSVGVMLYCLP--------------------------------PGQAGRFLEGDVK--DHCAAAIL  302 (356)
T ss_dssp             -CCEEEEEEETTTTEEEEEEEECCC--------------------------------TTCCCCEEEEEEE--TTEEEEEE
T ss_pred             CCCcEEEEEECCCCEEEEEEEeecc--------------------------------CCCcceeEccccC--CCEEEEEc
Confidence            8899999999999988776532111                                1222223344444  78999999


Q ss_pred             CCCcEEEEEeCCCCcceeeeeecCcccE-EEEEEeecCCCEEEEEecCCCccccccc
Q 010296          442 GNGSVRLWAIESETKDIQPLYNLPLVGF-VNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       442 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~-v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      .||+|+|||+.++ +.+..+..  |... +.+++|||||++|++| +.|++|+||+.
T Consensus       303 ~DgTIkIWDl~tG-k~l~tL~g--H~~~vvs~vafSPDG~~LaSG-S~D~TIklWd~  355 (356)
T 2w18_A          303 TSGTIAIWDLLLG-QCTALLPP--VSDQHWSFVKWSGTDSHLLAG-QKDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEETTTC-SEEEEECC--C--CCCCEEEECSSSSEEEEE-CTTSCEEEEEE
T ss_pred             CCCcEEEEECCCC-cEEEEecC--CCCCeEEEEEECCCCCEEEEE-ECCCcEEEecC
Confidence            9999999999998 44455443  5544 4568999999999999 89999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=8.7e-27  Score=231.20  Aligned_cols=300  Identities=13%  Similarity=0.057  Sum_probs=227.1

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeC--CCCccccccCCChhhhccCCCCCCCCCCCCCc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDV--SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQS  220 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (513)
                      +|+....+.+.++..+.. +.+++|+|+|++|++++.|++|.+||+  .+++.+..+                    .+.
T Consensus       163 v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i--------------------~~g  221 (543)
T 1nir_A          163 LVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--------------------KIG  221 (543)
T ss_dssp             EEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--------------------ECC
T ss_pred             EEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE--------------------ecC
Confidence            355566666667763333 899999999999999999999999999  777766544                    234


Q ss_pred             ccEEEEEEcC----CCCEEEEEeC-CCcEEEEeCCCcceeeeccCc----------CC-CeEEEEEecCCCe-EEEEeCC
Q 010296          221 KHILALAVSS----DGRYLASGGL-DRHIHLWDTRIQEHIQAFPGH----------RG-PVSCLTFRQGTSE-LFSGSFD  283 (513)
Q Consensus       221 ~~v~~~~~s~----~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~----------~~-~v~~~~~~~~~~~-l~~~~~d  283 (513)
                      ..+..++|+|    +|++|++++. +++|.|||..+++++..+..+          .. .+.++.++|++.. +++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            5689999999    9999999884 899999999999988877642          23 7899999998766 4566778


Q ss_pred             CcEEEEeCCCCceeE--EeecccCCeEEEEeeCCCe-EEEEe-CCCcEEEEecCCCeeeEEec-----CCCCeeEEEeec
Q 010296          284 RTVKIWNAEDRAYIS--TLFGHQSEVLTIDCLRKER-VLTVG-RDRSMQLWKVPEESRLVFRA-----PASSLECCCFIS  354 (513)
Q Consensus       284 g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~  354 (513)
                      +.|.+||+.+.+.+.  .+ .+...+..+.|+|+++ +++++ .+++|.+||+.+++......     |......+ ++|
T Consensus       302 g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p  379 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP  379 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred             CeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence            999999998866543  33 3566788999999986 44444 58899999999988764322     33223333 466


Q ss_pred             C-Ce-EEEEe-CCCCEEEEecCC-------CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296          355 N-DE-FLSGS-DDGSIELWSLLR-------KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW  424 (513)
Q Consensus       355 ~-~~-~~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  424 (513)
                      + +. ++++. .+++|.+|++.+       .+.+.++....                                     ..
T Consensus       380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g-------------------------------------~~  422 (543)
T 1nir_A          380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG-------------------------------------GG  422 (543)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-------------------------------------SC
T ss_pred             CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC-------------------------------------CC
Confidence            6 45 45554 589999999998       78888876432                                     22


Q ss_pred             EEEEEEecCCCEEEEec-------CCCcEEEEEeCCCCcceeeeee------cCcccEEEEEEeecCCCEEEEEec----
Q 010296          425 VSSVTVCGGSDLAASGA-------GNGSVRLWAIESETKDIQPLYN------LPLVGFVNSLAFAKSGQFLIAGVG----  487 (513)
Q Consensus       425 i~~~~~s~~~~~l~~g~-------~dg~v~vwd~~~~~~~~~~~~~------~~~~~~v~~v~~sp~~~~l~~~~~----  487 (513)
                      +..++|+|++++|++++       .+++|.|||+.+.......+..      ..+...+..++|+|+|+.|+++..    
T Consensus       423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~  502 (543)
T 1nir_A          423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN  502 (543)
T ss_dssp             CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTT
T ss_pred             ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCC
Confidence            67899999999999987       2679999999988543233210      124678999999999999997742    


Q ss_pred             CCCcccccccCCCcc
Q 010296          488 QEPRLGRWGHLPAAR  502 (513)
Q Consensus       488 ~dg~v~~W~~~~~~~  502 (513)
                      .++.|.+||..+...
T Consensus       503 ~~~~i~v~D~~t~~~  517 (543)
T 1nir_A          503 DSSALVVVDDKTLKL  517 (543)
T ss_dssp             SCCEEEEEETTTTEE
T ss_pred             CCCeEEEEECCCceE
Confidence            579999999887753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=3.9e-27  Score=226.86  Aligned_cols=276  Identities=9%  Similarity=-0.003  Sum_probs=211.6

Q ss_pred             eccccCC--Ccccch--hhhhccCCCeEEEEECC--------------CCCeEEEEeCC------ceEEEEeCCCCcccc
Q 010296          140 ASRVQKP--EATDEF--RVLLKHRQSVTAVALSE--------------DDSKGFSASKD------GSILHWDVSSGKGVK  195 (513)
Q Consensus       140 ~~~~~~~--~~~~~~--~~~~~h~~~V~~~~~s~--------------~~~~l~t~~~d------g~v~iwd~~~~~~~~  195 (513)
                      .-++|+.  ...+.+  ..+.+|...+..+++++              .+..++.++.+      +.|++||+.... ..
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~  172 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF  172 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE
Confidence            3466777  666655  45888988888888775              25666666554      799999997543 33


Q ss_pred             ccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCcceeeeccCcCCCeEEEEEec
Q 010296          196 YLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDR---HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ  272 (513)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  272 (513)
                      .                   +..|...|.+++|+|+|++|++++.++   .|++||+.+++.. .+..|...+.+++|+|
T Consensus       173 ~-------------------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp  232 (415)
T 2hqs_A          173 V-------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP  232 (415)
T ss_dssp             E-------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT
T ss_pred             E-------------------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC
Confidence            2                   246788899999999999999999875   9999999988875 4566888999999999


Q ss_pred             CCCeEE-EEeCCCc--EEEEeCCCCceeEEeecccCCeEEEEeeCCCe-EEEEeC-CC--cEEEEecCCCeeeEEecCCC
Q 010296          273 GTSELF-SGSFDRT--VKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-VLTVGR-DR--SMQLWKVPEESRLVFRAPAS  345 (513)
Q Consensus       273 ~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d~--~i~iwd~~~~~~~~~~~~~~  345 (513)
                      +|++|+ +++.++.  |++||+.+++. ..+..|...+.+++|+|++. +++++. ++  .|++|++.++....+..+..
T Consensus       233 dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~  311 (415)
T 2hqs_A          233 DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGS  311 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSS
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCC
Confidence            999888 6666655  99999998775 56677888999999999986 555554 44  68888998877665556667


Q ss_pred             CeeEEEeecCCe-EEEEeCC---CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCC
Q 010296          346 SLECCCFISNDE-FLSGSDD---GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSA  421 (513)
Q Consensus       346 ~v~~~~~~~~~~-~~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  421 (513)
                      .+.+++|+|+|. |++++.+   ..|++||+.+++.. .+....                                    
T Consensus       312 ~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~------------------------------------  354 (415)
T 2hqs_A          312 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF------------------------------------  354 (415)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS------------------------------------
T ss_pred             cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC------------------------------------
Confidence            888999999996 5555543   58999999988763 222111                                    


Q ss_pred             cceEEEEEEecCCCEEEEecCCC---cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCC
Q 010296          422 YSWVSSVTVCGGSDLAASGAGNG---SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQ  480 (513)
Q Consensus       422 ~~~i~~~~~s~~~~~l~~g~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  480 (513)
                        .+.+++|+|+|++|++++.++   .|++||+...  ....+..  +.+.|.+++|+|--.
T Consensus       355 --~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~--~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          355 --LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPA--TDGQVKFPAWSPYLH  410 (415)
T ss_dssp             --SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCC--SSSEEEEEEECCCCC
T ss_pred             --CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeC--CCCCCcCCccccccc
Confidence              289999999999999988776   7999998754  3344433  778999999999643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.4e-27  Score=229.93  Aligned_cols=280  Identities=11%  Similarity=0.016  Sum_probs=209.0

Q ss_pred             CCCeEEEEECCCCC-eEEEEe----CCc----eEEEEeC--CCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          159 RQSVTAVALSEDDS-KGFSAS----KDG----SILHWDV--SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       159 ~~~V~~~~~s~~~~-~l~t~~----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      ...|...+|.+.+. ++++|+    .+|    +|+|||+  .+++.+...                 .+.+|...+..++
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  124 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG  124 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence            35678888888775 555776    467    8999999  888765321                 1245555566665


Q ss_pred             EcC--------------CCCEEEEEeCC------CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC---
Q 010296          228 VSS--------------DGRYLASGGLD------RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR---  284 (513)
Q Consensus       228 ~s~--------------~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---  284 (513)
                      +++              .+..++.++.+      +.|++||+.. .....+..|...+.+++|+|+|++|++++.++   
T Consensus       125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~  203 (415)
T 2hqs_A          125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRS  203 (415)
T ss_dssp             HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCc
Confidence            554              25566665544      7999999974 55677778999999999999999999999875   


Q ss_pred             cEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-EE-EEeCCC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE
Q 010296          285 TVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-VL-TVGRDR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL  359 (513)
Q Consensus       285 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~  359 (513)
                      .|++||+.+++.. .+..+...+.+++|+|++. ++ +++.++  .|++||+.++....+..+...+.+++|+|+|. |+
T Consensus       204 ~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~  282 (415)
T 2hqs_A          204 ALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA  282 (415)
T ss_dssp             EEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEE
Confidence            9999999998775 4666888999999999986 44 445554  49999999888777777888899999999996 66


Q ss_pred             EEeC-CC--CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCE
Q 010296          360 SGSD-DG--SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDL  436 (513)
Q Consensus       360 ~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  436 (513)
                      +++. ++  .|.+||+.+++... +.                                     .+...+.+++|+|+|++
T Consensus       283 ~~s~~~g~~~i~~~d~~~~~~~~-l~-------------------------------------~~~~~~~~~~~spdG~~  324 (415)
T 2hqs_A          283 FTSDQAGRPQVYKVNINGGAPQR-IT-------------------------------------WEGSQNQDADVSSDGKF  324 (415)
T ss_dssp             EEECTTSSCEEEEEETTSSCCEE-CC-------------------------------------CSSSEEEEEEECTTSSE
T ss_pred             EEECCCCCcEEEEEECCCCCEEE-Ee-------------------------------------cCCCcccCeEECCCCCE
Confidence            6654 45  57777887776322 21                                     12234889999999999


Q ss_pred             EEEecCC---CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCC--cccccccCCC
Q 010296          437 AASGAGN---GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEP--RLGRWGHLPA  500 (513)
Q Consensus       437 l~~g~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg--~v~~W~~~~~  500 (513)
                      |++++.+   +.|++||+.++.  ...+..  + ..+.+++|+|+|++|++++.+++  .|.+|+....
T Consensus       325 l~~~~~~~g~~~i~~~d~~~~~--~~~l~~--~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          325 MVMVSSNGGQQHIAKQDLATGG--VQVLSS--T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             EEEEEECSSCEEEEEEETTTCC--EEECCC--S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             EEEEECcCCceEEEEEECCCCC--EEEecC--C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence            9988764   589999998872  223322  2 37899999999999999855444  7899987644

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=2.1e-26  Score=228.46  Aligned_cols=281  Identities=14%  Similarity=0.122  Sum_probs=217.1

Q ss_pred             EECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 010296          166 ALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH  245 (513)
Q Consensus       166 ~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  245 (513)
                      +|+|++.++++++.+++|.+||..+++.+..+                  ..++.  +.+++|+|+|++|++++.++.|.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i------------------~~g~~--~~~v~~spdg~~l~v~~~d~~V~  203 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI------------------DTGYA--VHISRMSASGRYLLVIGRDARID  203 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEE------------------ECSTT--EEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEE------------------ecCcc--cceEEECCCCCEEEEECCCCeEE
Confidence            48999999999999999999999999887765                  11232  88999999999999999999999


Q ss_pred             EEeC--CCcceeeeccCcCCCeEEEEEec----CCCeEEEEe-CCCcEEEEeCCCCceeEEeecc----------c-CCe
Q 010296          246 LWDT--RIQEHIQAFPGHRGPVSCLTFRQ----GTSELFSGS-FDRTVKIWNAEDRAYISTLFGH----------Q-SEV  307 (513)
Q Consensus       246 vwd~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~----------~-~~v  307 (513)
                      +||+  .+++++..+. +...+..++|+|    ++++|++++ .+++|.+||..+++++..+..+          . ..+
T Consensus       204 v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v  282 (543)
T 1nir_A          204 MIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  282 (543)
T ss_dssp             EEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             EEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence            9999  8888888887 455689999999    999999887 4899999999999988877642          2 268


Q ss_pred             EEEEeeCCC-eEE-EEeCCCcEEEEecCCCeeeE--EecCCCCeeEEEeecCCe-EE-EEeCCCCEEEEecCCCCeeEEe
Q 010296          308 LTIDCLRKE-RVL-TVGRDRSMQLWKVPEESRLV--FRAPASSLECCCFISNDE-FL-SGSDDGSIELWSLLRKKPVYIV  381 (513)
Q Consensus       308 ~~~~~~~~~-~~~-~~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~-~~-~~~~dg~i~iwd~~~~~~~~~~  381 (513)
                      .++.+++++ .++ +...++.|.+||+.+...+.  ...+...+..+.|+|+++ |+ ++..+++|.+||+.+++++..+
T Consensus       283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i  362 (543)
T 1nir_A          283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV  362 (543)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEee
Confidence            899999965 444 56678999999998754332  334556788899999997 44 4556899999999999988887


Q ss_pred             ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC-CCEEEEec-CCCcEEEEEeCCC-----
Q 010296          382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG-SDLAASGA-GNGSVRLWAIESE-----  454 (513)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g~-~dg~v~vwd~~~~-----  454 (513)
                      ....                                 ..|......+ ++|+ +.+++++. .|++|.||++.+.     
T Consensus       363 ~~g~---------------------------------~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~  408 (543)
T 1nir_A          363 DVGK---------------------------------TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY  408 (543)
T ss_dssp             ECSS---------------------------------SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred             ccCC---------------------------------CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence            6421                                 1122112223 5776 66777775 6899999999872     


Q ss_pred             -CcceeeeeecCcccEEEEEEeecCCCEEEEEe--c----CCCcccccccCCCccc
Q 010296          455 -TKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGV--G----QEPRLGRWGHLPAARN  503 (513)
Q Consensus       455 -~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--~----~dg~v~~W~~~~~~~~  503 (513)
                       -+.++.+..  +.+.+..|+|+|+|++|+++.  +    .+++|.+||+.+....
T Consensus       409 ~~~~v~~l~~--~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          409 AWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             BTSEEEEEEC--SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             cCeEEEEEEc--CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence             133444443  456678899999999999984  1    2679999999877643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=2.6e-26  Score=239.00  Aligned_cols=302  Identities=11%  Similarity=0.050  Sum_probs=214.6

Q ss_pred             CCCeEEEEECCCCCeEEEEeC-Cc-----eEEEEeCCCCccccccCCChhh-----hccCCCCCCCCCCCCCcccEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASK-DG-----SILHWDVSSGKGVKYLWPSEEV-----LKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+......     +..................|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            567999999999999999998 88     9999999998765443110000     000000000000000013478999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCcc--eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296          228 VSSDGRYLASGGLDRHIHLWDTRIQE--HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS  305 (513)
Q Consensus       228 ~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  305 (513)
                      |||||++|++++. +.|++||+.++.  .+..+..|...+.+++|+|+|++|+.++ ++.|++||+.+++.......+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            9999999999986 999999999873  4556677888999999999999999887 46999999998876654443333


Q ss_pred             C----------------eEEEEeeCCCe-EEEEeCCC---------------------------------cEEEEecCC-
Q 010296          306 E----------------VLTIDCLRKER-VLTVGRDR---------------------------------SMQLWKVPE-  334 (513)
Q Consensus       306 ~----------------v~~~~~~~~~~-~~~~~~d~---------------------------------~i~iwd~~~-  334 (513)
                      .                +.++.|+|+++ +++++.++                                 .|++||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            2                47899999985 55665554                                 788999988 


Q ss_pred             CeeeEEe---cCCCCeeEEEeecCCe-EEEEe-----CCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296          335 ESRLVFR---APASSLECCCFISNDE-FLSGS-----DDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH  405 (513)
Q Consensus       335 ~~~~~~~---~~~~~v~~~~~~~~~~-~~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  405 (513)
                      +......   .+...+..++| |+|. |++++     .+..|++||+.+++....+......                  
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~------------------  334 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT------------------  334 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS------------------
T ss_pred             CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC------------------
Confidence            7655443   35567889999 9986 55443     3567999999999877665432210                  


Q ss_pred             CCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEE-EeecCCCEEEE
Q 010296          406 SENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSL-AFAKSGQFLIA  484 (513)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~~  484 (513)
                                     ....+..++|+|+|+++++++.+|.++||.+..... ...+..  +...|..+ .|+|+|+.|++
T Consensus       335 ---------------~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~  396 (741)
T 2ecf_A          335 ---------------WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYF  396 (741)
T ss_dssp             ---------------CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEE
T ss_pred             ---------------cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEE
Confidence                           000156789999999999999999999998874323 444433  55667777 59999998887


Q ss_pred             EecCCC--cccccccCC
Q 010296          485 GVGQEP--RLGRWGHLP  499 (513)
Q Consensus       485 ~~~~dg--~v~~W~~~~  499 (513)
                      +++.++  .++||.+..
T Consensus       397 ~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          397 RAGIESARESQIYAVPL  413 (741)
T ss_dssp             EECSSCTTCBEEEEEET
T ss_pred             EEeCCCCceEEEEEEEc
Confidence            757776  899998754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=1.1e-25  Score=210.67  Aligned_cols=277  Identities=10%  Similarity=0.051  Sum_probs=202.3

Q ss_pred             EEECCCCCe-EEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC-CC
Q 010296          165 VALSEDDSK-GFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL-DR  242 (513)
Q Consensus       165 ~~~s~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg  242 (513)
                      ..|.+++.+ +++++.++.|.+||+.+++....+                   ..+...+ +++|+|++++|++++. ++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-------------------~~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-------------------TLGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-------------------ECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-------------------EccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            345666555 567888999999999998876644                   2234456 9999999997776665 88


Q ss_pred             cEEEEeCCCcce-eeeccCcCCCeEEEEEecCCCeEEEEeCCC---cEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-
Q 010296          243 HIHLWDTRIQEH-IQAFPGHRGPVSCLTFRQGTSELFSGSFDR---TVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-  317 (513)
Q Consensus       243 ~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-  317 (513)
                      .|.+||+.+++. ...+..+..+..+++|+|++++|+++..++   .|.+||+.+++.+..+.. ...+.+++|+|+++ 
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~  141 (331)
T 3u4y_A           63 TLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNG  141 (331)
T ss_dssp             EEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSC
T ss_pred             eEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCE
Confidence            999999999987 777776766666699999999999655553   899999999988877764 45578999999985 


Q ss_pred             EEEE-eCCCc-EEEEecCCCeee-----EEecCCCCeeEEEeecCCe-EE-EEeCCCCEEEEecCCCCe---eEEeecCC
Q 010296          318 VLTV-GRDRS-MQLWKVPEESRL-----VFRAPASSLECCCFISNDE-FL-SGSDDGSIELWSLLRKKP---VYIVKNAH  385 (513)
Q Consensus       318 ~~~~-~~d~~-i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~i~iwd~~~~~~---~~~~~~~~  385 (513)
                      ++++ ..++. |.+|++.....+     ........+..++|+|++. ++ ++..++.|.+||+.+++.   +..+... 
T Consensus       142 l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-  220 (331)
T 3u4y_A          142 LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-  220 (331)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-
T ss_pred             EEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-
Confidence            5544 45588 999998754332     2224455688999999996 44 555789999999999887   5555422 


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCcEEEEEeCCCCcc-eeeeee
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGSVRLWAIESETKD-IQPLYN  463 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~-~~~~~~  463 (513)
                                                           ..+..++|+|+|++|++++ .++.|.+||+.++... +..+..
T Consensus       221 -------------------------------------~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~  263 (331)
T 3u4y_A          221 -------------------------------------NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH  263 (331)
T ss_dssp             -------------------------------------SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred             -------------------------------------CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence                                                 1267899999999776554 5788999999887220 111111


Q ss_pred             c----C-cccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          464 L----P-LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       464 ~----~-~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      .    + ....+..++|+|+|++|++++..++.|.+|++...
T Consensus       264 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          264 GLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             CCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             ccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            0    0 11123568999999999888788889999998654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.7e-25  Score=210.38  Aligned_cols=278  Identities=11%  Similarity=0.170  Sum_probs=192.4

Q ss_pred             CeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC-CcEEEEeC
Q 010296          172 SKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD-RHIHLWDT  249 (513)
Q Consensus       172 ~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~vwd~  249 (513)
                      .+++ +++.++.|++|++........+                 ....|...+.+++|+|++++|++++.+ +.|.+|++
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~   67 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLT-----------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI   67 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEE-----------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEe-----------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEe
Confidence            3444 4478999999999632211111                 012455678899999999999988876 99999998


Q ss_pred             C--Ccc--eeeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCC---CCceeEEeecccCCeEEEEeeCCCe-EEE
Q 010296          250 R--IQE--HIQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAE---DRAYISTLFGHQSEVLTIDCLRKER-VLT  320 (513)
Q Consensus       250 ~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~-~~~  320 (513)
                      .  ++.  .+..+..+. .+..++|+|++++|++++. ++.|.+|++.   +...+..+. ....+.+++|+|++. +++
T Consensus        68 ~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~  145 (343)
T 1ri6_A           68 APDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWV  145 (343)
T ss_dssp             CTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEE
T ss_pred             cCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEE
Confidence            7  554  344455443 7889999999998876665 8889999994   334444444 344688999999985 556


Q ss_pred             Ee-CCCcEEEEecCC-Ceee-----EEe-cCCCCeeEEEeecCCe-EE-EEeCCCCEEEEecCC--CCe--eEEeecCCC
Q 010296          321 VG-RDRSMQLWKVPE-ESRL-----VFR-APASSLECCCFISNDE-FL-SGSDDGSIELWSLLR--KKP--VYIVKNAHP  386 (513)
Q Consensus       321 ~~-~d~~i~iwd~~~-~~~~-----~~~-~~~~~v~~~~~~~~~~-~~-~~~~dg~i~iwd~~~--~~~--~~~~~~~~~  386 (513)
                      ++ .++.|++|++.+ +...     ... .....+..++|+|++. ++ ++..++.|.+|++..  ++.  ...+.....
T Consensus       146 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~  225 (343)
T 1ri6_A          146 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE  225 (343)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT
T ss_pred             ecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCc
Confidence            66 789999999987 4432     122 2345788899999996 44 455889999999954  432  222211000


Q ss_pred             cccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE-EecCCCcEEEEEeCCCCcceeeeeecC
Q 010296          387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA-SGAGNGSVRLWAIESETKDIQPLYNLP  465 (513)
Q Consensus       387 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~g~~dg~v~vwd~~~~~~~~~~~~~~~  465 (513)
                      .                               ......+..++|+|++++|+ ++..++.|++|++.........+..++
T Consensus       226 ~-------------------------------~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~  274 (343)
T 1ri6_A          226 N-------------------------------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP  274 (343)
T ss_dssp             T-------------------------------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred             c-------------------------------ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec
Confidence            0                               01122378899999998777 455789999999984322333343333


Q ss_pred             cccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          466 LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       466 ~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      ....+.+++|+|+|++|++++..++.|.+|++..
T Consensus       275 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          275 TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             CCCccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            3334889999999999999966889999996653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=2.3e-24  Score=203.60  Aligned_cols=268  Identities=11%  Similarity=0.079  Sum_probs=208.0

Q ss_pred             cCCCeEEEEECCCCCeEEEEeC-------CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          158 HRQSVTAVALSEDDSKGFSASK-------DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ....+..++|+|++++|++++.       ++.|.+||..+++.+..+                    .....+..++|+|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~~~~~~~~s~   98 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI--------------------HNDLKPFGATINN   98 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE--------------------EESSCCCSEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE--------------------ecCCCcceEEECC
Confidence            4567899999999999988774       578999999998876654                    1223467799999


Q ss_pred             CCCEEEEE-eCCCcEEEEeCCCcceeeeccCcCCC---------eEEEEEecCCCeEEEEe--CCCcEEEEeCCCCceeE
Q 010296          231 DGRYLASG-GLDRHIHLWDTRIQEHIQAFPGHRGP---------VSCLTFRQGTSELFSGS--FDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       231 ~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~  298 (513)
                      ++++++++ ..++.|.+||+.+++.+..+..+...         +.+++|+|+++++++++  .++.|.+||+.+++.+.
T Consensus        99 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~  178 (353)
T 3vgz_A           99 TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT  178 (353)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE
T ss_pred             CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE
Confidence            99966554 55799999999999988877654432         78899999999888766  47889999999999888


Q ss_pred             EeecccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeEEe-c----CCCCeeEEEeecCCe-EE-EEeCCCCEEEE
Q 010296          299 TLFGHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLVFR-A----PASSLECCCFISNDE-FL-SGSDDGSIELW  370 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~-~----~~~~v~~~~~~~~~~-~~-~~~~dg~i~iw  370 (513)
                      .+..+...+.++.|+|++. +++++.++.|.+||+.++...... .    +...+..++|+|++. ++ +...++.|.+|
T Consensus       179 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  258 (353)
T 3vgz_A          179 AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVV  258 (353)
T ss_dssp             EECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEE
T ss_pred             EecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEE
Confidence            8775666688999999875 667788999999999988776332 2    345677899999985 44 44456999999


Q ss_pred             ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCcEEEE
Q 010296          371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGSVRLW  449 (513)
Q Consensus       371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v~vw  449 (513)
                      |+.+++.+..+....                                       ...++|+|+++++++++ .++.|.+|
T Consensus       259 d~~~~~~~~~~~~~~---------------------------------------~~~~~~s~dg~~l~v~~~~~~~v~~~  299 (353)
T 3vgz_A          259 DTRNGNILAKVAAPE---------------------------------------SLAVLFNPARNEAYVTHRQAGKVSVI  299 (353)
T ss_dssp             ETTTCCEEEEEECSS---------------------------------------CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ECCCCcEEEEEEcCC---------------------------------------CceEEECCCCCEEEEEECCCCeEEEE
Confidence            999999887776321                                       24589999999655554 78999999


Q ss_pred             EeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecC
Q 010296          450 AIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ  488 (513)
Q Consensus       450 d~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~  488 (513)
                      |+.++ +.+..   +.....+.+++|+|+|++|+++...
T Consensus       300 d~~~~-~~~~~---~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          300 DAKSY-KVVKT---FDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ETTTT-EEEEE---EECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             ECCCC-eEEEE---EecCCCCCeEEEcCCCCEEEEEEcc
Confidence            99887 33332   2345578999999999988887443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=5.3e-25  Score=202.26  Aligned_cols=254  Identities=9%  Similarity=-0.022  Sum_probs=188.5

Q ss_pred             EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-cce
Q 010296          176 SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI-QEH  254 (513)
Q Consensus       176 t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~-~~~  254 (513)
                      +++.+++|++||+.+++....                    ..|...|.+++|+|++++|++++ ++.|++||+.+ ++.
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~--------------------~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~   75 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVV--------------------WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP   75 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEE--------------------EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred             CCCcceeEEEEeCCCCceeee--------------------ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence            446789999999998876542                    35778899999999999999987 78999999999 887


Q ss_pred             eeeccCc-CCCeEEEEEecCCCeEEEEeC--CC--cEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-EE-EEeCCCcE
Q 010296          255 IQAFPGH-RGPVSCLTFRQGTSELFSGSF--DR--TVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-VL-TVGRDRSM  327 (513)
Q Consensus       255 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~--dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i  327 (513)
                      ...+..+ ...+.+++|+|++++|++++.  ++  .|.+|++.++. ...+. +...+..+.|+|++. ++ ++..++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~  153 (297)
T 2ojh_A           76 EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT-KNLPSYWHGWSPDGKSFTYCGIRDQVF  153 (297)
T ss_dssp             EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC-SSSSEEEEEECTTSSEEEEEEEETTEE
T ss_pred             eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee-cCCCccceEECCCCCEEEEEECCCCce
Confidence            7766665 367899999999999999883  34  44555555554 33444 333588999999885 44 56778989


Q ss_pred             EEEec--CCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCCCEEEEecC-CCCeeEEeecCCCcccCCCCcccCcCccc
Q 010296          328 QLWKV--PEESRLVFRAPASSLECCCFISNDE-FLSGS-DDGSIELWSLL-RKKPVYIVKNAHPLLDGLKNFEQDEGKIS  402 (513)
Q Consensus       328 ~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  402 (513)
                      .+|++  .+.....+..+...+.+++|+|++. +++++ .++.++||++. .+..+..+.                    
T Consensus       154 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--------------------  213 (297)
T 2ojh_A          154 DIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT--------------------  213 (297)
T ss_dssp             EEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC--------------------
T ss_pred             EEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe--------------------
Confidence            99985  4455556666777899999999996 55444 68999999986 344444432                    


Q ss_pred             cccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC-----------CcEEEEEeCCCCcceeeeeecCcccEEE
Q 010296          403 NGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN-----------GSVRLWAIESETKDIQPLYNLPLVGFVN  471 (513)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----------g~v~vwd~~~~~~~~~~~~~~~~~~~v~  471 (513)
                                       .+...+.+++|+|++++|++++.+           +.|++||+.++. .........+...+.
T Consensus       214 -----------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~  275 (297)
T 2ojh_A          214 -----------------DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN-VETLFDLFGGQGTMN  275 (297)
T ss_dssp             -----------------CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS-CEEEEEEEESTTTSC
T ss_pred             -----------------cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC-ceeeeccCCCCcccc
Confidence                             222348999999999999988765           569999998762 222222223567789


Q ss_pred             EEEeecCCCEEEEEecCCC
Q 010296          472 SLAFAKSGQFLIAGVGQEP  490 (513)
Q Consensus       472 ~v~~sp~~~~l~~~~~~dg  490 (513)
                      +++|+|+|++|++++.+++
T Consensus       276 ~~~~spdg~~l~~~~~~~~  294 (297)
T 2ojh_A          276 SPNWSPDGDEFAYVRYFPV  294 (297)
T ss_dssp             SCCBCTTSSEEEEEEECCC
T ss_pred             cceECCCCCEEEEEEeccC
Confidence            9999999999998855553

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=3.4e-25  Score=230.01  Aligned_cols=281  Identities=9%  Similarity=0.044  Sum_probs=199.9

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc---cEEEEEEcCCCCEEE
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK---HILALAVSSDGRYLA  236 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~  236 (513)
                      ..+.+++|+|+|+++++ +.||+|++||+.+++....+                   ..|..   .|.+++|||||++|+
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-------------------~~~~~~~~~v~~~~~SpDg~~l~   76 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-------------------EGKKIESLRAIRYEISPDREYAL   76 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-------------------CTTTTTTTTCSEEEECTTSSEEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-------------------ccccccccccceEEECCCCCEEE
Confidence            34788999999998877 78999999999988765543                   22222   489999999999999


Q ss_pred             EEeCC---------CcEEEEeCCCcce--eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296          237 SGGLD---------RHIHLWDTRIQEH--IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS  305 (513)
Q Consensus       237 s~~~d---------g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  305 (513)
                      +++.+         +.|++||+.+++.  +.....|...+..++|+|+|+.|+.++. +.|++|++.+++.......+..
T Consensus        77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~  155 (723)
T 1xfd_A           77 FSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE  155 (723)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT
T ss_pred             EEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC
Confidence            99764         7888999998876  2223345556889999999999998886 7999999999877665554443


Q ss_pred             Ce------------------EEEEeeCCCe-EEEEeCCC----------------------------------cEEEEec
Q 010296          306 EV------------------LTIDCLRKER-VLTVGRDR----------------------------------SMQLWKV  332 (513)
Q Consensus       306 ~v------------------~~~~~~~~~~-~~~~~~d~----------------------------------~i~iwd~  332 (513)
                      .+                  .++.|+|+++ |++++.++                                  .|++||+
T Consensus       156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~  235 (723)
T 1xfd_A          156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (723)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             CceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence            33                  7899999985 44555332                                  7999999


Q ss_pred             CCCee-eEEecC------CCCeeEEEeecCCeEE-EEe----CCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCc
Q 010296          333 PEESR-LVFRAP------ASSLECCCFISNDEFL-SGS----DDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGK  400 (513)
Q Consensus       333 ~~~~~-~~~~~~------~~~v~~~~~~~~~~~~-~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (513)
                      .++.. ..+..+      ...+..++|+|+|+++ +.+    .+..|++||+.+++....+...+.              
T Consensus       236 ~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~--------------  301 (723)
T 1xfd_A          236 NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE--------------  301 (723)
T ss_dssp             SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS--------------
T ss_pred             CCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC--------------
Confidence            88764 333333      4568889999999744 443    235799999999887665543221              


Q ss_pred             cccccCCCCCCCCCCcCCCCCcceE----EEEEEecCCCEEEE--ecCCC------cEEEEEeCCCCcc--eeeeeecCc
Q 010296          401 ISNGHSENGNLNPGSYHSSSAYSWV----SSVTVCGGSDLAAS--GAGNG------SVRLWAIESETKD--IQPLYNLPL  466 (513)
Q Consensus       401 i~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~s~~~~~l~~--g~~dg------~v~vwd~~~~~~~--~~~~~~~~~  466 (513)
                                            .++    ..++|+|+|+.|+.  +..++      .|++|++......  ...+..  +
T Consensus       302 ----------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~  357 (723)
T 1xfd_A          302 ----------------------AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--G  357 (723)
T ss_dssp             ----------------------SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--S
T ss_pred             ----------------------CEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec--C
Confidence                                  112    36799999997775  44666      4666663233120  233321  2


Q ss_pred             ccEEE-EEEeecCCCEEEEEecCC--CcccccccCC
Q 010296          467 VGFVN-SLAFAKSGQFLIAGVGQE--PRLGRWGHLP  499 (513)
Q Consensus       467 ~~~v~-~v~~sp~~~~l~~~~~~d--g~v~~W~~~~  499 (513)
                      ...+. .++|+|+|++|+.++..+  +.++||.+..
T Consensus       358 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence            23344 479999999998775666  8899998754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=1.3e-24  Score=203.70  Aligned_cols=268  Identities=10%  Similarity=0.023  Sum_probs=195.6

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc-cEEEEEEcCCCCEEE-EEeCCCcEEEEeC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK-HILALAVSSDGRYLA-SGGLDRHIHLWDT  249 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~-s~~~dg~i~vwd~  249 (513)
                      .+|++++.++.|.+||+.+++.+..+.                  .++.. .+..++|+|++++++ ++..++.|.+||+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~   63 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL   63 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEEC
Confidence            478999999999999999988766440                  11111 377899999998664 5556789999999


Q ss_pred             CCcceeeeccC-c----CCCeEEEEEecCCCeEEEEe------------CCCcEEEEeCCCCceeEEeecccCCeEEEEe
Q 010296          250 RIQEHIQAFPG-H----RGPVSCLTFRQGTSELFSGS------------FDRTVKIWNAEDRAYISTLFGHQSEVLTIDC  312 (513)
Q Consensus       250 ~~~~~~~~~~~-~----~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  312 (513)
                      .+++.+..+.. +    ...+.+++|+|++++|++++            .++.|.+||+.+++.+..+.. ...+.+++|
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~  142 (337)
T 1pby_B           64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAW  142 (337)
T ss_dssp             TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEE
T ss_pred             CCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEE
Confidence            99988776653 1    22677899999999998886            579999999999888777664 456788999


Q ss_pred             eCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCC-----------------------CE
Q 010296          313 LRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDG-----------------------SI  367 (513)
Q Consensus       313 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg-----------------------~i  367 (513)
                      +|++..+..+ ++.|++||+.++..............+.|+|++. ++..+ .++                       .|
T Consensus       143 s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  221 (337)
T 1pby_B          143 ARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             CTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             CCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence            9998644333 6899999999887664332222111236788775 33222 222                       46


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR  447 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~  447 (513)
                      .+||+.+++.. .+..                                   ..+...+.+++|+|++++|+++  ++.|+
T Consensus       222 ~~~d~~~~~~~-~~~~-----------------------------------~~~~~~~~~~~~s~dg~~l~~~--~~~v~  263 (337)
T 1pby_B          222 LTMDLETGEMA-MREV-----------------------------------RIMDVFYFSTAVNPAKTRAFGA--YNVLE  263 (337)
T ss_dssp             EEEETTTCCEE-EEEE-----------------------------------EECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred             EEEeCCCCCce-Eeec-----------------------------------CCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence            89999888765 3221                                   1111237889999999999988  78999


Q ss_pred             EEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          448 LWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       448 vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      +||+.++ +.+..+.   ....+.+++|+|+|++|+++ +.++.|.+|+...+..
T Consensus       264 ~~d~~~~-~~~~~~~---~~~~~~~~~~s~dg~~l~~~-~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          264 SFDLEKN-ASIKRVP---LPHSYYSVNVSTDGSTVWLG-GALGDLAAYDAETLEK  313 (337)
T ss_dssp             EEETTTT-EEEEEEE---CSSCCCEEEECTTSCEEEEE-SBSSEEEEEETTTCCE
T ss_pred             EEECCCC-cCcceec---CCCceeeEEECCCCCEEEEE-cCCCcEEEEECcCCcE
Confidence            9999886 3333222   33557899999999999998 7799999999877653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=1.9e-24  Score=223.67  Aligned_cols=277  Identities=10%  Similarity=0.001  Sum_probs=200.2

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      ..|.+++|+|+ .+++.+. ++.|++||+.+++....                    ..+...+.+++|||+|++|+++ 
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l--------------------~~~~~~~~~~~~SpdG~~la~~-  138 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL--------------------FDTNEETASLDFSPVGDRVAYV-  138 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE--------------------ECCTTCCTTCEECTTSSEEEEE-
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc--------------------cCCcccccCCcCCCCCCEEEEE-
Confidence            57999999999 6666554 59999999988765432                    2345567889999999999996 


Q ss_pred             CCCcEEEEeCCC-----cceeeeccCcCCC--------------eEEEEEecCCCeEEEEe-------------------
Q 010296          240 LDRHIHLWDTRI-----QEHIQAFPGHRGP--------------VSCLTFRQGTSELFSGS-------------------  281 (513)
Q Consensus       240 ~dg~i~vwd~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~-------------------  281 (513)
                      .++.|++|++.+     ++.......+...              +.++.|+|+|++|++++                   
T Consensus       139 ~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~  218 (706)
T 2z3z_A          139 RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEA  218 (706)
T ss_dssp             ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSC
T ss_pred             ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence            579999999998     7766555444433              48899999999999887                   


Q ss_pred             --------------CCCcEEEEeCCCCceeEEee--cccCCeEEEEeeCCCe-EEEEeCCC-----cEEEEecCCC-eee
Q 010296          282 --------------FDRTVKIWNAEDRAYISTLF--GHQSEVLTIDCLRKER-VLTVGRDR-----SMQLWKVPEE-SRL  338 (513)
Q Consensus       282 --------------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-~~~~~~d~-----~i~iwd~~~~-~~~  338 (513)
                                    .+..|++||+.+++......  .+...+.+++|+|++. +++++.++     .|++||+.++ ...
T Consensus       219 ~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~  298 (706)
T 2z3z_A          219 ESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR  298 (706)
T ss_dssp             EEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE
T ss_pred             ceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee
Confidence                          44679999999887654432  4566789999999986 55655554     8999999987 433


Q ss_pred             EEe--cCCC---CeeEEEeec--CCe-EEEEeCCCCEEEEecC-CCCeeEEeecCCCcccCCCCcccCcCccccccCCCC
Q 010296          339 VFR--APAS---SLECCCFIS--NDE-FLSGSDDGSIELWSLL-RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENG  409 (513)
Q Consensus       339 ~~~--~~~~---~v~~~~~~~--~~~-~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  409 (513)
                      ...  ....   .+..+.|+|  +|. ++++..++.++||.+. +++.+..+...                         
T Consensus       299 ~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~-------------------------  353 (706)
T 2z3z_A          299 TLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG-------------------------  353 (706)
T ss_dssp             EEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS-------------------------
T ss_pred             EEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC-------------------------
Confidence            222  2221   246789999  987 5577788999999876 55555554321                         


Q ss_pred             CCCCCCcCCCCCcceEEE-EEEecCCCEEEEec-CCC----cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEE
Q 010296          410 NLNPGSYHSSSAYSWVSS-VTVCGGSDLAASGA-GNG----SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLI  483 (513)
Q Consensus       410 ~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~g~-~dg----~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  483 (513)
                                  ...+.. ++|+|+++.|+.++ .++    .|+.|++.++  ....+   .+...+.+++|||+|++|+
T Consensus       354 ------------~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~--~~~~l---~~~~~~~~~~~spdg~~l~  416 (706)
T 2z3z_A          354 ------------EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG--KTKDL---TPESGMHRTQLSPDGSAII  416 (706)
T ss_dssp             ------------SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC--CCEES---CCSSSEEEEEECTTSSEEE
T ss_pred             ------------CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC--Cceec---cCCCceEEEEECCCCCEEE
Confidence                        122655 79999998776554 444    5555665554  22323   2556689999999999998


Q ss_pred             EEecCC---CcccccccCCCc
Q 010296          484 AGVGQE---PRLGRWGHLPAA  501 (513)
Q Consensus       484 ~~~~~d---g~v~~W~~~~~~  501 (513)
                      .+++.+   +.|.+|+...+.
T Consensus       417 ~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          417 DIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEEECSSCSCEEEEEESSSCE
T ss_pred             EEecCCCCCcEEEEEECCCCe
Confidence            775544   569999987654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=3.1e-24  Score=223.43  Aligned_cols=273  Identities=11%  Similarity=0.126  Sum_probs=200.2

Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCC---ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSG---KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      .|.+++|||||++|++++. +.|++||+.++   ....                    +..|...+.+++|||+|++|++
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~--------------------l~~~~~~~~~~~~SPDG~~la~  168 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ--------------------LTHGEGFATDAKLSPKGGFVSF  168 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB--------------------CCCSSSCEEEEEECTTSSEEEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE--------------------cccCCcccccccCCCCCCEEEE
Confidence            3899999999999999887 99999999987   3322                    2456778999999999999999


Q ss_pred             EeCCCcEEEEeCCCcceeeeccCcCCC----------------eEEEEEecCCCeEEEEeCCC-----------------
Q 010296          238 GGLDRHIHLWDTRIQEHIQAFPGHRGP----------------VSCLTFRQGTSELFSGSFDR-----------------  284 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~l~~~~~dg-----------------  284 (513)
                      ++ ++.|++||+.+++.......+...                +.+++|+|+|++|++++.|+                 
T Consensus       169 ~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~  247 (741)
T 2ecf_A          169 IR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTD  247 (741)
T ss_dssp             EE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred             Ee-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCccc
Confidence            88 568999999988776655544432                47899999999999987765                 


Q ss_pred             ----------------cEEEEeCCC-CceeEEee--cccCCeEEEEeeCCCeEE-EEe-----CCCcEEEEecCCCeeeE
Q 010296          285 ----------------TVKIWNAED-RAYISTLF--GHQSEVLTIDCLRKERVL-TVG-----RDRSMQLWKVPEESRLV  339 (513)
Q Consensus       285 ----------------~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~-~~~-----~d~~i~iwd~~~~~~~~  339 (513)
                                      .|++||+.+ ++......  .|...+..++| |++..+ +++     .+..|++||+.++....
T Consensus       248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~  326 (741)
T 2ecf_A          248 VIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV  326 (741)
T ss_dssp             EEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred             ceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence                            789999988 77654433  36778899999 998544 443     25789999999877653


Q ss_pred             Ee-cCCC----CeeEEEeecCCe-EEEEeCCCCEEEEecC-CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCC
Q 010296          340 FR-APAS----SLECCCFISNDE-FLSGSDDGSIELWSLL-RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLN  412 (513)
Q Consensus       340 ~~-~~~~----~v~~~~~~~~~~-~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  412 (513)
                      .. .+..    .+..++|+|+|. +++++.+|.++||.+. .++ ...+..                             
T Consensus       327 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~-----------------------------  376 (741)
T 2ecf_A          327 LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH-----------------------------  376 (741)
T ss_dssp             EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC-----------------------------
T ss_pred             EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee-----------------------------
Confidence            32 2221    346789999997 5577888988888775 333 433322                             


Q ss_pred             CCCcCCCCCcceEEEE-EEecCCCEEE-EecCCC--cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecC
Q 010296          413 PGSYHSSSAYSWVSSV-TVCGGSDLAA-SGAGNG--SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ  488 (513)
Q Consensus       413 ~~~~~~~~~~~~i~~~-~~s~~~~~l~-~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~  488 (513)
                              +...+..+ .|+|+++.|+ +++.++  .++||++.........+.   ....+.+++|||||++|+..++.
T Consensus       377 --------~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~---~~~~~~~~~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          377 --------GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS---KAPGMHSASFARNASVYVDSWSN  445 (741)
T ss_dssp             --------SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC---CSCSEEEEEECTTSSEEEEEEEE
T ss_pred             --------cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc---cCCCceEEEECCCCCEEEEEecC
Confidence                    12227676 5999998775 455555  899999975433334333   24557899999999998877554


Q ss_pred             C---Cccccccc
Q 010296          489 E---PRLGRWGH  497 (513)
Q Consensus       489 d---g~v~~W~~  497 (513)
                      .   +.+.+|+.
T Consensus       446 ~~~p~~~~l~~~  457 (741)
T 2ecf_A          446 NSTPPQIELFRA  457 (741)
T ss_dssp             TTEEEEEEEEET
T ss_pred             CCCCCeEEEEEc
Confidence            3   35677765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=6.4e-24  Score=220.45  Aligned_cols=294  Identities=10%  Similarity=0.029  Sum_probs=203.6

Q ss_pred             ccCCCcccchhhhhccCC---CeEEEEECCCCCeEEEEeCC---------ceEEEEeCCCCccccccCCChhhhccCCCC
Q 010296          143 VQKPEATDEFRVLLKHRQ---SVTAVALSEDDSKGFSASKD---------GSILHWDVSSGKGVKYLWPSEEVLKSHGAK  210 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~---~V~~~~~s~~~~~l~t~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  210 (513)
                      +|+.........+.+|..   .|.+++|||||++|++++.+         +.|.+||+.+++... +             
T Consensus        41 ~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l-------------  106 (723)
T 1xfd_A           41 LWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-L-------------  106 (723)
T ss_dssp             EBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-C-------------
T ss_pred             EEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEe-c-------------
Confidence            455555555566666665   49999999999999999764         788899999887521 1             


Q ss_pred             CCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCe------------------EEEEEec
Q 010296          211 DPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPV------------------SCLTFRQ  272 (513)
Q Consensus       211 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v------------------~~~~~~~  272 (513)
                         .....|...+.+++|||+|++||+++. +.|++|++.+++.......+...+                  .+++|+|
T Consensus       107 ---~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp  182 (723)
T 1xfd_A          107 ---DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (723)
T ss_dssp             ---CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             ---cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC
Confidence               012345556889999999999999985 799999999888776655544433                  7899999


Q ss_pred             CCCeEEEEeCCC----------------------------------cEEEEeCCCCceeEEeecc------cCCeEEEEe
Q 010296          273 GTSELFSGSFDR----------------------------------TVKIWNAEDRAYISTLFGH------QSEVLTIDC  312 (513)
Q Consensus       273 ~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~~~v~~~~~  312 (513)
                      +|++|++++.++                                  .|++||+.+++....+..+      ...+..++|
T Consensus       183 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~  262 (723)
T 1xfd_A          183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW  262 (723)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred             CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEE
Confidence            999999887553                                  7999999988765555543      567899999


Q ss_pred             eCCCeEE-EEe----CCCcEEEEecCCCeeeEE--ecCCCCe----eEEEeecCCe-EEE--EeCCC------CEEEEe-
Q 010296          313 LRKERVL-TVG----RDRSMQLWKVPEESRLVF--RAPASSL----ECCCFISNDE-FLS--GSDDG------SIELWS-  371 (513)
Q Consensus       313 ~~~~~~~-~~~----~d~~i~iwd~~~~~~~~~--~~~~~~v----~~~~~~~~~~-~~~--~~~dg------~i~iwd-  371 (513)
                      +|+++++ +..    .+..|++||+.++.....  ..+...+    ..++|+|+|. |+.  +..++      .|.+|| 
T Consensus       263 SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~  342 (723)
T 1xfd_A          263 ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS  342 (723)
T ss_dssp             SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS
T ss_pred             eCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEec
Confidence            9999776 333    236799999988776533  2222333    3789999996 443  55666      466666 


Q ss_pred             cCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---CcE
Q 010296          372 LLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---GSV  446 (513)
Q Consensus       372 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~v  446 (513)
                      ..++..  ...+..                                    .+......++|+|+|++|+..+.+   +.+
T Consensus       343 ~~~~~~~~~~~l~~------------------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  386 (723)
T 1xfd_A          343 QPNSSNDNIQSITS------------------------------------GDWDVTKILAYDEKGNKIYFLSTEDLPRRR  386 (723)
T ss_dssp             SCCSSSCCCCBSCC------------------------------------SSSCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred             cCCCCccceeEeec------------------------------------CCeEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence            333331  222211                                    011113347999999998766554   789


Q ss_pred             EEEEeCCCCc-ceeeeee-cCcccEEEEEEeecCCCEEEEEecCCC
Q 010296          447 RLWAIESETK-DIQPLYN-LPLVGFVNSLAFAKSGQFLIAGVGQEP  490 (513)
Q Consensus       447 ~vwd~~~~~~-~~~~~~~-~~~~~~v~~v~~sp~~~~l~~~~~~dg  490 (513)
                      +||++..... ....+.. ..+...+..++|+|+|++|+..++...
T Consensus       387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  432 (723)
T 1xfd_A          387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG  432 (723)
T ss_dssp             EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred             EEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence            9999975422 2222221 114566889999999999988755443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=2.3e-23  Score=195.82  Aligned_cols=268  Identities=7%  Similarity=0.085  Sum_probs=186.3

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCC-ceEEEEeCC--CCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKD-GSILHWDVS--SGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~d-g~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      ..|...+.+++|+|++++|++++.+ +.|.+|++.  ++......                 .... ...+.+++|+|++
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~s~dg   95 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA-----------------ESAL-PGSLTHISTDHQG   95 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-----------------EEEC-SSCCSEEEECTTS
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc-----------------cccc-CCCCcEEEEcCCC
Confidence            3577889999999999999988876 999999997  44422110                 0111 2267899999999


Q ss_pred             CEEEEEeC-CCcEEEEeC---CCcceeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCCC-CceeE----Eeec
Q 010296          233 RYLASGGL-DRHIHLWDT---RIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAED-RAYIS----TLFG  302 (513)
Q Consensus       233 ~~l~s~~~-dg~i~vwd~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~----~~~~  302 (513)
                      ++|++++. ++.|.+|++   ...+.+..+..+ ..+.+++|+|++++|++++ .++.|.+|++.+ ++...    .+..
T Consensus        96 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  174 (343)
T 1ri6_A           96 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT  174 (343)
T ss_dssp             SEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC
T ss_pred             CEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc
Confidence            98877665 788999999   444555555543 4688999999999888877 899999999987 54432    2222


Q ss_pred             -ccCCeEEEEeeCCCe-EEEEe-CCCcEEEEecCC--Ceee---EEe-cC-----CCCeeEEEeecCCe-EE-EEeCCCC
Q 010296          303 -HQSEVLTIDCLRKER-VLTVG-RDRSMQLWKVPE--ESRL---VFR-AP-----ASSLECCCFISNDE-FL-SGSDDGS  366 (513)
Q Consensus       303 -~~~~v~~~~~~~~~~-~~~~~-~d~~i~iwd~~~--~~~~---~~~-~~-----~~~v~~~~~~~~~~-~~-~~~~dg~  366 (513)
                       ....+..++|+|++. +++++ .++.|.+|++..  +...   ... ..     ...+..++|+|++. ++ ++..++.
T Consensus       175 ~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~  254 (343)
T 1ri6_A          175 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL  254 (343)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE
Confidence             344788999999986 54444 789999999953  3221   111 11     23466799999985 44 5557899


Q ss_pred             EEEEecC--CC--CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-
Q 010296          367 IELWSLL--RK--KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-  441 (513)
Q Consensus       367 i~iwd~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-  441 (513)
                      |.+|++.  ++  +.+..+....                                      .+..++|+|+|++|++++ 
T Consensus       255 i~v~d~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~s~dg~~l~~~~~  296 (343)
T 1ri6_A          255 ITVFSVSEDGSVLSKEGFQPTET--------------------------------------QPRGFNVDHSGKYLIAAGQ  296 (343)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSS--------------------------------------SCCCEEECTTSSEEEEECT
T ss_pred             EEEEEEcCCCCceEEeeeecCCC--------------------------------------ccceEEECCCCCEEEEecC
Confidence            9999998  32  2333332111                                      177899999999888877 


Q ss_pred             CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCC
Q 010296          442 GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQ  480 (513)
Q Consensus       442 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  480 (513)
                      .++.|.+|++......+..+..++......+++|.|+.+
T Consensus       297 ~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          297 KSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG  335 (343)
T ss_dssp             TTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred             CCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence            689999997764333344444443334566778877643

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=1.3e-23  Score=225.96  Aligned_cols=280  Identities=13%  Similarity=0.079  Sum_probs=216.6

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCC-CccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSS-GKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ....+.+|.+.+.++.|+++ .++++++.++++.||.+.. +.....+                   ..|. .+..++|+
T Consensus       195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-------------------~~~~-~~~~~~~S  253 (1045)
T 1k32_A          195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKH-------------------TSFT-DYYPRHLN  253 (1045)
T ss_dssp             EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEEC-------------------CCCC-SSCEEEEE
T ss_pred             CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEe-------------------cCCC-CcceeeEc
Confidence            34556789999999999998 6677888899999998653 2222221                   2232 35677999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccC-----------cCCCeEEEEEe-cCCCeEEEEeCCCcEEEEeCCCCcee
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPG-----------HRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYI  297 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~  297 (513)
                      |+|++|+++. ++.|++|++.... +..+..           |...+.+++|+ |+|++|++++ ++.|++|++.++...
T Consensus       254 pDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~  330 (1045)
T 1k32_A          254 TDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL  330 (1045)
T ss_dssp             ESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred             CCCCEEEEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence            9999998885 8999999995444 335554           34468999999 9999999887 789999999887654


Q ss_pred             EEeecccC-CeEEEEeeCCC-eEEEEeCCCcEE-EEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecC
Q 010296          298 STLFGHQS-EVLTIDCLRKE-RVLTVGRDRSMQ-LWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLL  373 (513)
Q Consensus       298 ~~~~~~~~-~v~~~~~~~~~-~~~~~~~d~~i~-iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~  373 (513)
                      . +..|.. .+..+.|+ ++ .+++++.+..+. +|++.++....+..+...+..++|+|+|. +++++.++.|++||+.
T Consensus       331 ~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~  408 (1045)
T 1k32_A          331 K-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  408 (1045)
T ss_dssp             E-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             E-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence            3 556776 89999999 87 455777778888 89998877665556778899999999996 7788999999999999


Q ss_pred             CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC---------
Q 010296          374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG---------  444 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg---------  444 (513)
                      +++....+..                                     +...+.+++|||+|++|++++.++         
T Consensus       409 tg~~~~~~~~-------------------------------------~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~  451 (1045)
T 1k32_A          409 TGKPTVIERS-------------------------------------REAMITDFTISDNSRFIAYGFPLKHGETDGYVM  451 (1045)
T ss_dssp             TCCEEEEEEC-------------------------------------SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             CCceEEeccC-------------------------------------CCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence            9887766532                                     222378899999999999887654         


Q ss_pred             -cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          445 -SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       445 -~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                       .|++||+.++ . ...+.  .+...+.+++|+|||++|+++ +.++...+|+..
T Consensus       452 ~~i~l~d~~~g-~-~~~l~--~~~~~~~~~~~spdG~~l~~~-s~~~~~~~~~~~  501 (1045)
T 1k32_A          452 QAIHVYDMEGR-K-IFAAT--TENSHDYAPAFDADSKNLYYL-SYRSLDPSPDRV  501 (1045)
T ss_dssp             EEEEEEETTTT-E-EEECS--CSSSBEEEEEECTTSCEEEEE-ESCCCCCEECSS
T ss_pred             CeEEEEECCCC-c-EEEee--CCCcccCCceEcCCCCEEEEE-ecccCCcCcchh
Confidence             8999999886 2 33333  356678889999999999988 677777888654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=1.2e-22  Score=189.99  Aligned_cols=260  Identities=7%  Similarity=0.038  Sum_probs=184.6

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeC-CceEEEEeCCCCcc-ccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASK-DGSILHWDVSSGKG-VKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~-dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      ++....+....+..+...+ +++|+|++++|++++. ++.|.+||+.++.. ...+                   ..+..
T Consensus        25 ~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-------------------~~~~~   84 (331)
T 3u4y_A           25 FSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-------------------QEGQS   84 (331)
T ss_dssp             EETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-------------------EECSS
T ss_pred             EeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-------------------ccCCC
Confidence            4444455555555566667 9999999997776665 89999999998876 4332                   23344


Q ss_pred             cEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEE-eCCCc-EEEEeCCCCce
Q 010296          222 HILALAVSSDGRYLASGGLDR---HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSG-SFDRT-VKIWNAEDRAY  296 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~  296 (513)
                      ++.+++|+|++++|+++..++   .|.+||+.+++.+..+.. .....+++|+|++++|+++ ..++. |.+|++.....
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~  163 (331)
T 3u4y_A           85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV  163 (331)
T ss_dssp             CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC
T ss_pred             CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCc
Confidence            455599999999999655553   899999999998887764 4457999999999876655 55588 99999876443


Q ss_pred             e----EEeecccCCeEEEEeeCCCe-EEEEe-CCCcEEEEecCCCee---eEEecCCCCeeEEEeecCCe-EE-EEeCCC
Q 010296          297 I----STLFGHQSEVLTIDCLRKER-VLTVG-RDRSMQLWKVPEESR---LVFRAPASSLECCCFISNDE-FL-SGSDDG  365 (513)
Q Consensus       297 ~----~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg  365 (513)
                      +    .........+..++|+|+++ +++++ .++.|.+||+.++..   +........+..++|+|+|. ++ +...++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  243 (331)
T 3u4y_A          164 LFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTV  243 (331)
T ss_dssp             EEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEE
T ss_pred             EeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCC
Confidence            3    12223445689999999986 54444 688999999988776   54444556778899999997 43 444578


Q ss_pred             CEEEEecCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-C
Q 010296          366 SIELWSLLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-G  442 (513)
Q Consensus       366 ~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~  442 (513)
                      .|.+||+.+++.  +..+.......                              .........++|+|++++|++++ .
T Consensus       244 ~i~~~d~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~spdg~~l~v~~~~  293 (331)
T 3u4y_A          244 DVFNFNQLSGTLSFVKSFGHGLLID------------------------------PRPLFGANQMALNKTETKLFISANI  293 (331)
T ss_dssp             EEEEEETTTTEEEEEEEEECCCCCC------------------------------CGGGTTCCCEEECTTSSEEEEEETT
T ss_pred             EEEEEECCCCceeeecccccccccC------------------------------CCCcccccceEECCCCCEEEEecCC
Confidence            899999998876  33332110000                              00001136689999999886554 5


Q ss_pred             CCcEEEEEeCCC
Q 010296          443 NGSVRLWAIESE  454 (513)
Q Consensus       443 dg~v~vwd~~~~  454 (513)
                      ++.|.+|++...
T Consensus       294 ~~~v~v~d~~~~  305 (331)
T 3u4y_A          294 SRELKVFTISGK  305 (331)
T ss_dssp             TTEEEEEETTSC
T ss_pred             CCcEEEEEecCC
Confidence            679999999775

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.92  E-value=3.3e-23  Score=195.24  Aligned_cols=275  Identities=12%  Similarity=-0.010  Sum_probs=185.4

Q ss_pred             EEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-EEeCCC
Q 010296          164 AVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA-SGGLDR  242 (513)
Q Consensus       164 ~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg  242 (513)
                      .+++++++.++++++.+++|.+||+.+++.+..+.                  .+....+..++|+|++++++ ++..++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~   65 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNHYG   65 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETTTT
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCCCC
Confidence            45788899999999999999999999988765440                  01112467899999998665 555689


Q ss_pred             cEEEEeCCCcceeeeccCc------CCCeEEEEEecCCCeEEEEeCC------------CcEEEEeCCCCce---eEEee
Q 010296          243 HIHLWDTRIQEHIQAFPGH------RGPVSCLTFRQGTSELFSGSFD------------RTVKIWNAEDRAY---ISTLF  301 (513)
Q Consensus       243 ~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~  301 (513)
                      .|.+||+.+++.+..+..+      ...+.+++|+|++++|++++.+            +.|.+||+.+++.   +..+.
T Consensus        66 ~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  145 (349)
T 1jmx_B           66 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP  145 (349)
T ss_dssp             EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred             cEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc
Confidence            9999999999887766532      2337889999999999988865            8999999988543   33333


Q ss_pred             cccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCC-------------------------CeeEEEeecCC
Q 010296          302 GHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPAS-------------------------SLECCCFISND  356 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~v~~~~~~~~~  356 (513)
                       +...+.+++|+|++.+++++  +.|++||+.++..........                         ....+++++++
T Consensus       146 -~~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  222 (349)
T 1jmx_B          146 -MPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  222 (349)
T ss_dssp             -CCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             -CCCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence             44468899999999866653  449999998877653322111                         12234444332


Q ss_pred             eEE--EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-C
Q 010296          357 EFL--SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-G  433 (513)
Q Consensus       357 ~~~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~  433 (513)
                      ...  .......+..++..+++....-..                                    .....+..++|+| +
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~sp~d  266 (349)
T 1jmx_B          223 KQDPATADLLYGYLSVDLKTGKTHTQEFA------------------------------------DLTELYFTGLRSPKD  266 (349)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEE------------------------------------ECSSCEEEEEECSSC
T ss_pred             cCCccccccceeEEEEeccCCcEEecccc------------------------------------cCCCcceeeEecCCC
Confidence            100  000001112234443332111000                                    0111288999999 9


Q ss_pred             CCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          434 SDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       434 ~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      +++|+++  ++.|++||+.++ +.+..+.   ....+.+++|+|+|++|+++ +.++.|.+|+..+...
T Consensus       267 g~~l~~~--~~~v~~~d~~~~-~~~~~~~---~~~~~~~~~~s~dg~~l~~~-~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          267 PNQIYGV--LNRLAKYDLKQR-KLIKAAN---LDHTYYCVAFDKKGDKLYLG-GTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             TTEEEEE--ESEEEEEETTTT-EEEEEEE---CSSCCCEEEECSSSSCEEEE-SBSSEEEEEETTTTEE
T ss_pred             CCEEEEE--cCeEEEEECccC-eEEEEEc---CCCCccceEECCCCCEEEEe-cCCCeEEEEeccccce
Confidence            9999988  889999999887 3323222   33457789999999999987 7789999999876643

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=3.8e-23  Score=213.97  Aligned_cols=295  Identities=7%  Similarity=0.001  Sum_probs=194.9

Q ss_pred             eEEEEECCCCCeEEEEeCCceEEEEeCCCCccc-cccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296          162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGV-KYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL  240 (513)
Q Consensus       162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  240 (513)
                      +..+.|.  +..+++++.++ | +||+.+++.+ ..+...........  ........+...|.+++|+|+ +.++.+. 
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~--~~~~~~~~~~~~v~~~~~spd-~~~~~~~-   99 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMP--EGCKFQTTDAFPSFRTLDAGR-GLVVLFT-   99 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-------------CCCEEEEETTT-TEEEEEE-
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhcc--chhccccccccCceeEEECCC-CeEEEEE-
Confidence            5557777  66777777788 8 9999998873 32211111100000  000001122356999999999 6666654 


Q ss_pred             CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC-----CceeEEeecccCC---------
Q 010296          241 DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED-----RAYISTLFGHQSE---------  306 (513)
Q Consensus       241 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~---------  306 (513)
                      ++.|++||+.+++.... ..+...+.+++|+|+|++|+++ .++.|++|++.+     ++.......+...         
T Consensus       100 ~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~  177 (706)
T 2z3z_A          100 QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ  177 (706)
T ss_dssp             TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred             CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence            59999999998876544 3466778899999999999985 689999999998     7766544433332         


Q ss_pred             -----eEEEEeeCCCeEE-EEe---------------------------------CCCcEEEEecCCCeeeEEe---cCC
Q 010296          307 -----VLTIDCLRKERVL-TVG---------------------------------RDRSMQLWKVPEESRLVFR---APA  344 (513)
Q Consensus       307 -----v~~~~~~~~~~~~-~~~---------------------------------~d~~i~iwd~~~~~~~~~~---~~~  344 (513)
                           +.++.|+|+++.+ +++                                 .+..|++||+.++......   .+.
T Consensus       178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~  257 (706)
T 2z3z_A          178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE  257 (706)
T ss_dssp             GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred             hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence                 4789999998644 555                                 3478999999988765433   345


Q ss_pred             CCeeEEEeecCCe-EEEEeCCC-----CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCC
Q 010296          345 SSLECCCFISNDE-FLSGSDDG-----SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHS  418 (513)
Q Consensus       345 ~~v~~~~~~~~~~-~~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  418 (513)
                      ..+..++|+|+|. +++++.++     .|.+||+.+++....+.....                                
T Consensus       258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~--------------------------------  305 (706)
T 2z3z_A          258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD--------------------------------  305 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC--------------------------------
T ss_pred             eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC--------------------------------
Confidence            6788999999996 66666665     899999999844443321110                                


Q ss_pred             CCCcceEEEEEEec--CCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEE-EEeecCCCEEEEEecCCC----c
Q 010296          419 SSAYSWVSSVTVCG--GSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNS-LAFAKSGQFLIAGVGQEP----R  491 (513)
Q Consensus       419 ~~~~~~i~~~~~s~--~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~-v~~sp~~~~l~~~~~~dg----~  491 (513)
                      ......+.+++|+|  +|++|++++.+|.++||.+......+..+..  +...+.. ++|+|+|+.|+++++.++    .
T Consensus       306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~  383 (706)
T 2z3z_A          306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERH  383 (706)
T ss_dssp             SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBE
T ss_pred             CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEE
Confidence            00001146789999  9999999999999999998733234444432  4556766 899999999888767665    4


Q ss_pred             ccccccCCC
Q 010296          492 LGRWGHLPA  500 (513)
Q Consensus       492 v~~W~~~~~  500 (513)
                      |..|+...+
T Consensus       384 l~~~d~~~~  392 (706)
T 2z3z_A          384 FYCIDIKGG  392 (706)
T ss_dssp             EEEEETTCC
T ss_pred             EEEEEcCCC
Confidence            555555443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=2.4e-22  Score=216.27  Aligned_cols=309  Identities=9%  Similarity=-0.033  Sum_probs=221.8

Q ss_pred             cCCCeEEEEEC-CCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc-cEEEEEEcCCCCEE
Q 010296          158 HRQSVTAVALS-EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK-HILALAVSSDGRYL  235 (513)
Q Consensus       158 h~~~V~~~~~s-~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l  235 (513)
                      |...|.+++|+ |+|++|++++ ++.|.+|++.++....                    +..|.. .+..++|+ +|+.|
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~s-dg~~l  351 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--------------------VPEPLRIRYVRRGGD-TKVAF  351 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE--------------------CSCCSCEEEEEECSS-SEEEE
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE--------------------ccCCCcceEEeeeEc-CCCeE
Confidence            55679999999 9999999888 7899999998766432                    234555 79999999 99999


Q ss_pred             EEEeCCCcEE-EEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296          236 ASGGLDRHIH-LWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       236 ~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  314 (513)
                      ++++.++.+. +|++.+++.... ..|...+..++|+|+|++|++++.++.|++||+.+++....+..|...+.+++|+|
T Consensus       352 ~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp  430 (1045)
T 1k32_A          352 IHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD  430 (1045)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred             EEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC
Confidence            9999888888 999987765544 37888999999999999999999999999999999988877778999999999999


Q ss_pred             CCeEE-EEeCC----------CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCee----
Q 010296          315 KERVL-TVGRD----------RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPV----  378 (513)
Q Consensus       315 ~~~~~-~~~~d----------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~----  378 (513)
                      +++.+ +++.+          +.|++||+.++....+..+...+..++|+|+|. +++++.++...+|+.......    
T Consensus       431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~  510 (1045)
T 1k32_A          431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV  510 (1045)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSC
T ss_pred             CCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccC
Confidence            99644 55543          489999999888666777777888999999996 778888888888987644321    


Q ss_pred             ---EEeecCCCcccC--CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE-------------e
Q 010296          379 ---YIVKNAHPLLDG--LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS-------------G  440 (513)
Q Consensus       379 ---~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-------------g  440 (513)
                         ..+.........  +. ............ ..+. .........+...+..++++|+|.++++             .
T Consensus       511 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d-~~g~-~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~  587 (1045)
T 1k32_A          511 SKPFVIPLIPGSPNPTKLV-PRSMTSEAGEYD-LNDM-YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA  587 (1045)
T ss_dssp             BEEEEEESSTTCCCGGGCC-CGGGSCCCCCCC-CTTG-GGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCC
T ss_pred             ceeEEEEeCCCCCCccccC-cCcccccccccc-ccCH-hHceEEcCCCCCChhheEEcCCCeEEEEecccCccccccccc
Confidence               111100000000  00 000000000000 0000 0000111234466899999999987875             1


Q ss_pred             cCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          441 AGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       441 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      .....|++||+.++.  ...+.     ..+.+++|||||++|+++ +.+ .|++|++..+.
T Consensus       588 ~~~~~l~~~d~~~~~--~~~l~-----~~v~~~~~S~DG~~l~~~-~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          588 PEKGVLLKYDVKTRK--VTEVK-----NNLTDLRLSADRKTVMVR-KDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             CCCEEEEEEETTTCC--EEEEE-----EEEEEEEECTTSCEEEEE-ETT-SCEEEEESSCT
T ss_pred             CCCceEEEEECCCCc--EEEee-----cCcceEEECCCCCEEEEE-cCC-cEEEEeCccCc
Confidence            234578888887762  22222     568899999999999988 444 89999997765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=1e-21  Score=189.67  Aligned_cols=212  Identities=14%  Similarity=0.128  Sum_probs=156.1

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE--
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA--  236 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--  236 (513)
                      ...++.+++++++.+|++++.++ ++||+................+...    .......+...|++++|+|++++|+  
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~l~~spdg~~lav~  110 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDK----VQGLLVPMKFPIHHLALSCDNLTLSAC  110 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEEC----CCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCccccccc----CccccccCCCcccEEEEcCCCCEEEEE
Confidence            45689999999999999999988 8888754211100000000000000    0001123567799999999999999  


Q ss_pred             --EEeCCCcEEEEeCCCc--------c---eeeeccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          237 --SGGLDRHIHLWDTRIQ--------E---HIQAFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       237 --s~~~dg~i~vwd~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                        +|+.|+.|+|||+.++        +   .+..+.+|...|.+++|+|+ +.+|++++.||+|++||++++..+....+
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~  190 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP  190 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC
Confidence              7888999999998765        1   24566779999999999998 78999999999999999999877767777


Q ss_pred             ccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCC-------CCeeEEEeecCCeEEE--EeCCCC------
Q 010296          303 HQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPA-------SSLECCCFISNDEFLS--GSDDGS------  366 (513)
Q Consensus       303 ~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~--~~~dg~------  366 (513)
                      |...|.+++|+|++ .+++++.|+.|++||++......+..+.       ..+.+++|++++.+++  ...+|.      
T Consensus       191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~  270 (434)
T 2oit_A          191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD  270 (434)
T ss_dssp             GGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred             CCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence            89999999999987 5668999999999999833333333322       2788999999987553  334433      


Q ss_pred             EEEEecCCC
Q 010296          367 IELWSLLRK  375 (513)
Q Consensus       367 i~iwd~~~~  375 (513)
                      +++|++...
T Consensus       271 v~i~~l~~~  279 (434)
T 2oit_A          271 VVMALLPKK  279 (434)
T ss_dssp             EEEEECCCT
T ss_pred             eEEEEeccC
Confidence            889999865

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=5.1e-22  Score=187.00  Aligned_cols=247  Identities=12%  Similarity=0.131  Sum_probs=170.8

Q ss_pred             CcccEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCcc--eeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCC
Q 010296          219 QSKHILALAVSSDGRYLASGGL---DRHIHLWDTRIQE--HIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAE  292 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~  292 (513)
                      +...+..++|+|+|+ |++++.   ++.|.+|++.++.  .+..+..+...+..++|+|++++|++++ .++.|.+|++.
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            345577899999999 555543   6899999997665  4444455777889999999999988887 68999999996


Q ss_pred             C-Cc--eeEEeec---------ccCCeEEEEeeCCCeEEEEe-CCCcEEEEecC-CCeeeE----EecCCCCeeEEEeec
Q 010296          293 D-RA--YISTLFG---------HQSEVLTIDCLRKERVLTVG-RDRSMQLWKVP-EESRLV----FRAPASSLECCCFIS  354 (513)
Q Consensus       293 ~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~~~~~-~d~~i~iwd~~-~~~~~~----~~~~~~~v~~~~~~~  354 (513)
                      . +.  .+..+..         ....+.+++|+|+++++++. .++.|.+|++. .+....    .......+..++|+|
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp  196 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP  196 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence            3 22  2333321         11247889999998866554 57889999998 443321    122334678899999


Q ss_pred             CCe-EE-EEeCCCCEEEEecCC--CCee--EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296          355 NDE-FL-SGSDDGSIELWSLLR--KKPV--YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV  428 (513)
Q Consensus       355 ~~~-~~-~~~~dg~i~iwd~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~  428 (513)
                      +|. ++ ++..++.|.+|++..  ++..  ..+......                               ......+..+
T Consensus       197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~-------------------------------~~~~~~~~~i  245 (347)
T 3hfq_A          197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD-------------------------------YTAHNGAAAI  245 (347)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT-------------------------------CCSCCEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC-------------------------------CCCCCcceeE
Confidence            996 44 456788999999874  4322  122111000                               0111348899


Q ss_pred             EEecCCCEEE-EecCCCcEEEEEeCCCCcceeeeeecC-cccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          429 TVCGGSDLAA-SGAGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       429 ~~s~~~~~l~-~g~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      +|+|+|++|+ +...++.|.+|++.... .+..+..++ +...+.+++|+|+|++|+++...++.|.+|++.
T Consensus       246 ~~spdG~~l~v~~~~~~~v~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          246 RLSHDGHFLYVSNRGYNTLAVFAVTADG-HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EECTTSCEEEEEEETTTEEEEEEECGGG-CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEECCCC-cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            9999999774 55568999999997431 223333322 345578999999999999986777999999554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=7.9e-23  Score=206.48  Aligned_cols=276  Identities=10%  Similarity=0.068  Sum_probs=193.2

Q ss_pred             cCCCeEEEEECCCCCeEEEEeC-CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCc-ccEEEEEEcCCCCEE
Q 010296          158 HRQSVTAVALSEDDSKGFSASK-DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQS-KHILALAVSSDGRYL  235 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l  235 (513)
                      +..+|++++|+|||++||+++. ||+++||++.++....                    +..|. ..+.+++|+|+ +++
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l   78 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI   78 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence            3668999999999999998876 9999999986655433                    12344 57999999999 777


Q ss_pred             EEEeC---CCcEEEEeCCC---cceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296          236 ASGGL---DRHIHLWDTRI---QEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL  308 (513)
Q Consensus       236 ~s~~~---dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  308 (513)
                      ++++.   +....+|.+..   +... .+..+ ..+...+|+|+++. +++.+.++.+.+||+.+++...... +..  .
T Consensus        79 ~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~  153 (582)
T 3o4h_A           79 LVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--F  153 (582)
T ss_dssp             EEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--C
T ss_pred             EEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--c
Confidence            77765   45456654432   2222 33322 23456788998864 3444455566699999887655443 333  8


Q ss_pred             EEEeeCCCeEE-EEeCC----CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCC--CEEEEecCCCCeeEE
Q 010296          309 TIDCLRKERVL-TVGRD----RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDG--SIELWSLLRKKPVYI  380 (513)
Q Consensus       309 ~~~~~~~~~~~-~~~~d----~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg--~i~iwd~~~~~~~~~  380 (513)
                      ++.|+|+|+++ +++.+    +.|++||+.++....+..+...+..++|+|+|+ |+++..++  .|++||+.+++.. .
T Consensus       154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~  232 (582)
T 3o4h_A          154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D  232 (582)
T ss_dssp             EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred             eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence            89999999665 45555    789999999888877778888899999999997 66677788  8999999988876 3


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP  460 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~  460 (513)
                      +.........                             .........+|+|+|.++++++.+|.++||++  + +... 
T Consensus       233 ~~~~~~~~~~-----------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~~~~-  279 (582)
T 3o4h_A          233 LELPSKDFSS-----------------------------YRPTAITWLGYLPDGRLAVVARREGRSAVFID--G-ERVE-  279 (582)
T ss_dssp             CCCSCSHHHH-----------------------------HCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-EEEC-
T ss_pred             ccCCCcChhh-----------------------------hhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-Ceec-
Confidence            3221110000                             00011334459999999999999999999999  4 2222 


Q ss_pred             eeecCcccEEEEEEeecCCCEEEEEecCC--CcccccccC
Q 010296          461 LYNLPLVGFVNSLAFAKSGQFLIAGVGQE--PRLGRWGHL  498 (513)
Q Consensus       461 ~~~~~~~~~v~~v~~sp~~~~l~~~~~~d--g~v~~W~~~  498 (513)
                          ...+.|.+++|+ ++++++++++..  +.|.+|+..
T Consensus       280 ----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          280 ----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             ----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             ----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence                134679999999 999988874444  345566543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=2.9e-22  Score=191.78  Aligned_cols=300  Identities=10%  Similarity=-0.019  Sum_probs=205.9

Q ss_pred             ccCCCcccchhhhhccCCCeEE-----EEECCCCCeEEEEeC-Cc--eEEEEeCCCCccccccCCChhhhccCCCCCCCC
Q 010296          143 VQKPEATDEFRVLLKHRQSVTA-----VALSEDDSKGFSASK-DG--SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQG  214 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~-----~~~s~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (513)
                      +.++.....+..+..|......     .+|+|||++|+.++. ++  .|.+||+.+++.....                 
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-----------------   76 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-----------------   76 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-----------------
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-----------------
Confidence            3455556667777778766666     899999999998887 67  4888899887765422                 


Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEE--EecCCCeEEEE------------
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLT--FRQGTSELFSG------------  280 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~------------  280 (513)
                        ..+...+..++|+|+|+.|+.++.++.|++||+.+++....+..+...+....  ++|++.+++..            
T Consensus        77 --~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A           77 --EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             --CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred             --eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccc
Confidence              23444445678999999999999999999999999987766665655554444  48999888742            


Q ss_pred             ----------eCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-CCeEE-EEeC------CCcEEEEecCCCeeeEEec
Q 010296          281 ----------SFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-KERVL-TVGR------DRSMQLWKVPEESRLVFRA  342 (513)
Q Consensus       281 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~-~~~~------d~~i~iwd~~~~~~~~~~~  342 (513)
                                ..+..|++||+.+++.. .+..+...+..+.|+| ++..+ .+..      ...|.++++.+.....+..
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  233 (388)
T 3pe7_A          155 WKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT  233 (388)
T ss_dssp             HHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC
T ss_pred             cchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee
Confidence                      24478999999988654 4445677789999999 88644 4443      3378888887665554444


Q ss_pred             CC--CCeeEEEeecCCe-EEEEe-CCC----CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCC
Q 010296          343 PA--SSLECCCFISNDE-FLSGS-DDG----SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPG  414 (513)
Q Consensus       343 ~~--~~v~~~~~~~~~~-~~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  414 (513)
                      +.  ..+....|+|+|. |+..+ .++    .|++||+.+++...........                           
T Consensus       234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~---------------------------  286 (388)
T 3pe7_A          234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACS---------------------------  286 (388)
T ss_dssp             CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEE---------------------------
T ss_pred             CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCce---------------------------
Confidence            43  2467789999996 54332 222    3999999998754332211000                           


Q ss_pred             CcCCCCCc-ceEEEEEEecCCCEEEEe---------cCCCcEEEEEeCCCCcceeeeeecCccc-----------EEEEE
Q 010296          415 SYHSSSAY-SWVSSVTVCGGSDLAASG---------AGNGSVRLWAIESETKDIQPLYNLPLVG-----------FVNSL  473 (513)
Q Consensus       415 ~~~~~~~~-~~i~~~~~s~~~~~l~~g---------~~dg~v~vwd~~~~~~~~~~~~~~~~~~-----------~v~~v  473 (513)
                            +. .....++|+|+|+.|+..         ..+..|++||+.++  .+..+..  +..           .+.++
T Consensus       287 ------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l~~--~~~~~~~~~~~~~~~~~~~  356 (388)
T 3pe7_A          287 ------HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG--TQHRVAR--HDTSWKVFEGDRQVTHPHP  356 (388)
T ss_dssp             ------EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT--EEEEEEE--CCCCCCCBTTBSSTTCCCC
T ss_pred             ------eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC--ceEEecc--ccCcccccccccccCCCCc
Confidence                  00 001123699999988754         45668999999886  2233333  222           47788


Q ss_pred             EeecCCCEEEEEecCCCcccccccCC
Q 010296          474 AFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       474 ~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      +|+|||++|+.++..+|...||.+.-
T Consensus       357 ~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          357 SFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             cCCCCCCEEEEEecCCCceeEEEEEC
Confidence            99999999998877888888886543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=3.2e-21  Score=181.95  Aligned_cols=243  Identities=10%  Similarity=-0.013  Sum_probs=188.1

Q ss_pred             cccEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEE-EeCCCcEEEEeC
Q 010296          220 SKHILALAVSSDGRYLASGGL-------DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFS-GSFDRTVKIWNA  291 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~  291 (513)
                      ...+..++|+|++++|++++.       ++.|.+||+.+++.+..+.. ...+..++|+|+++++++ ...++.|.+||+
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            445889999999998888774       46899999999998888764 445788999999996664 455799999999


Q ss_pred             CCCceeEEeecccCC---------eEEEEeeCCCe-EEEEe--CCCcEEEEecCCCeeeEEec-CCCCeeEEEeecCCe-
Q 010296          292 EDRAYISTLFGHQSE---------VLTIDCLRKER-VLTVG--RDRSMQLWKVPEESRLVFRA-PASSLECCCFISNDE-  357 (513)
Q Consensus       292 ~~~~~~~~~~~~~~~---------v~~~~~~~~~~-~~~~~--~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-  357 (513)
                      .+++.+..+..+...         +.++.|+|++. +++++  .++.|.+||+.+........ +...+..++|+|++. 
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            999988777654322         68899999875 44444  47889999999888775544 556688899999985 


Q ss_pred             EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE
Q 010296          358 FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA  437 (513)
Q Consensus       358 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  437 (513)
                      +++++.++.|.+||+.+++.+..+....                                 ..+...+..++|+|++++|
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~s~dg~~l  245 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLD---------------------------------DGKEHFFINISLDTARQRA  245 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCC---------------------------------SSSCCCEEEEEEETTTTEE
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCC---------------------------------CCCCcccceEEECCCCCEE
Confidence            7788889999999999998887775421                                 1122338899999999977


Q ss_pred             EEecC-CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          438 ASGAG-NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       438 ~~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ++++. ++.|.+||+.++ ..+..+..   .. ..+++|+|+|++|+++...++.|.+|+...+.
T Consensus       246 ~~~~~~~~~v~~~d~~~~-~~~~~~~~---~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          246 FITDSKAAEVLVVDTRNG-NILAKVAA---PE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             EEEESSSSEEEEEETTTC-CEEEEEEC---SS-CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEeCCCCEEEEEECCCC-cEEEEEEc---CC-CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence            76654 589999999887 33333322   12 25699999999888886789999999987654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=7.7e-22  Score=184.83  Aligned_cols=237  Identities=14%  Similarity=0.147  Sum_probs=177.7

Q ss_pred             CeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          161 SVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      .+.+++|+|++++++ +++.++.|.+||+.+++.+..+....              ...|...+.+++|+|+|++|++++
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~s~dg~~l~~~~  100 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST--------------PEERVKSLFGAALSPDGKTLAIYE  100 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB--------------TTEEEECTTCEEECTTSSEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC--------------cccccccccceEECCCCCEEEEEe
Confidence            588999999998765 55667899999999888765441000              000223567899999999998886


Q ss_pred             ------------CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296          240 ------------LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV  307 (513)
Q Consensus       240 ------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  307 (513)
                                  .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++  ++.|.+||+.+++.+..+..+.. .
T Consensus       101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~  176 (337)
T 1pby_B          101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-E  176 (337)
T ss_dssp             EEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-T
T ss_pred             cccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-C
Confidence                        579999999999888877764 4567889999999988888  68999999999988776654331 1


Q ss_pred             EEEEeeCCCeEE-EEeC-CC-----------------------cEEEEecCCCeee--EEecCCCCeeEEEeecCCeEEE
Q 010296          308 LTIDCLRKERVL-TVGR-DR-----------------------SMQLWKVPEESRL--VFRAPASSLECCCFISNDEFLS  360 (513)
Q Consensus       308 ~~~~~~~~~~~~-~~~~-d~-----------------------~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~  360 (513)
                      ..+.|+|++..+ +.+. ++                       .|.+||+.+++..  ....+...+.+++|+|++.++.
T Consensus       177 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  256 (337)
T 1pby_B          177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF  256 (337)
T ss_dssp             TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEE
Confidence            123677876533 2222 22                       4789999887654  2334556778899999997443


Q ss_pred             EeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe
Q 010296          361 GSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG  440 (513)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g  440 (513)
                      .+ ++.|.+||+.+++.+..+.....                                      +.+++|+|+|++|+++
T Consensus       257 ~~-~~~v~~~d~~~~~~~~~~~~~~~--------------------------------------~~~~~~s~dg~~l~~~  297 (337)
T 1pby_B          257 GA-YNVLESFDLEKNASIKRVPLPHS--------------------------------------YYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             EE-ESEEEEEETTTTEEEEEEECSSC--------------------------------------CCEEEECTTSCEEEEE
T ss_pred             Ee-CCeEEEEECCCCcCcceecCCCc--------------------------------------eeeEEECCCCCEEEEE
Confidence            33 79999999999988777653221                                      7789999999999999


Q ss_pred             cCCCcEEEEEeCCC
Q 010296          441 AGNGSVRLWAIESE  454 (513)
Q Consensus       441 ~~dg~v~vwd~~~~  454 (513)
                      +.++.|++||+.++
T Consensus       298 ~~~~~i~v~d~~~~  311 (337)
T 1pby_B          298 GALGDLAAYDAETL  311 (337)
T ss_dssp             SBSSEEEEEETTTC
T ss_pred             cCCCcEEEEECcCC
Confidence            99999999999887

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=4.3e-21  Score=181.68  Aligned_cols=276  Identities=8%  Similarity=0.078  Sum_probs=184.2

Q ss_pred             CCCeEEEEe----CCceEEEEeCC--CCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC--
Q 010296          170 DDSKGFSAS----KDGSILHWDVS--SGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD--  241 (513)
Q Consensus       170 ~~~~l~t~~----~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--  241 (513)
                      ...++++|+    .++.|.+|.+.  +++.....                  .. +...+..++|+|++++|++++.+  
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~~~~~   72 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVNEFSK   72 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEECCSS
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEEccCC
Confidence            334566664    45688998764  44432211                  11 45567789999999999999875  


Q ss_pred             --CcEEEEeCCC--cc--eeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCCCCceeEEe------ec------
Q 010296          242 --RHIHLWDTRI--QE--HIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAEDRAYISTL------FG------  302 (513)
Q Consensus       242 --g~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~------~~------  302 (513)
                        +.|.+|++..  +.  .+..+..+......+++  ++++|++++ .++.|.+|++.....+..+      .+      
T Consensus        73 ~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~  150 (361)
T 3scy_A           73 DQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKE  150 (361)
T ss_dssp             TTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTT
T ss_pred             CCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcc
Confidence              7999998765  43  33344445566777887  788777666 5889999999754332211      11      


Q ss_pred             --ccCCeEEEEeeCCCe-EEEEe-CCCcEEEEecCCCee--------------eEEecCCCCeeEEEeecCCe-EEEEe-
Q 010296          303 --HQSEVLTIDCLRKER-VLTVG-RDRSMQLWKVPEESR--------------LVFRAPASSLECCCFISNDE-FLSGS-  362 (513)
Q Consensus       303 --~~~~v~~~~~~~~~~-~~~~~-~d~~i~iwd~~~~~~--------------~~~~~~~~~v~~~~~~~~~~-~~~~~-  362 (513)
                        +...+.+++|+|+++ +++++ .++.|.+|++.....              .........+..++|+|+|+ +++++ 
T Consensus       151 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  230 (361)
T 3scy_A          151 RQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE  230 (361)
T ss_dssp             TCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             ccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence              122357899999996 55554 478999998875431              22334456678999999996 44554 


Q ss_pred             CCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC
Q 010296          363 DDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG  442 (513)
Q Consensus       363 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  442 (513)
                      .++.|.+|++.+++..........                                ..+......++|+|+|++|+++..
T Consensus       231 ~~~~v~v~~~~~g~~~~~~~~~~~--------------------------------~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          231 IGGTVIAFRYADGMLDEIQTVAAD--------------------------------TVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             TTCEEEEEEEETTEEEEEEEEESC--------------------------------SSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             CCCeEEEEEecCCceEEeEEEecC--------------------------------CCCCCCcccEEECCCCCEEEEECC
Confidence            689999999987654222111000                                111123689999999998877665


Q ss_pred             --CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          443 --NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       443 --dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                        ++.|.+|++......+..+........+.+++|+|+|++|+++...++.|.+|.+.
T Consensus       279 ~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          279 LKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             SSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence              48999999973222333333332345678999999999999996688999997554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=4.4e-22  Score=182.66  Aligned_cols=235  Identities=15%  Similarity=0.025  Sum_probs=171.7

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCC-CccccccCCChhhhccCCCCCCCCCCCCC-cccEEEEEEcC
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSS-GKGVKYLWPSEEVLKSHGAKDPQGRATKQ-SKHILALAVSS  230 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~  230 (513)
                      ..+..|...|.+++|+|++++|++++ ++.|++||+.+ +......                   ..+ ...|.+++|+|
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-------------------~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-------------------TGFATICNNDHGISP   94 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-------------------CTTCCCBCSCCEECT
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-------------------cccccccccceEECC
Confidence            35667899999999999999999987 78999999998 6654322                   222 46688999999


Q ss_pred             CCCEEEEEeC--CC--cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCC-CceeEEeeccc
Q 010296          231 DGRYLASGGL--DR--HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAED-RAYISTLFGHQ  304 (513)
Q Consensus       231 ~~~~l~s~~~--dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~~~  304 (513)
                      ++++|++++.  ++  .|.+|++.++. ...+..+ ..+..++|+|++++|+ +++.++.+.||++.. ......+..+.
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  172 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE  172 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence            9999999983  33  45555555554 3444433 3489999999999887 778899999998632 23345566678


Q ss_pred             CCeEEEEeeCCCe-EEEEe-CCCcEEEEecC--CCeeeEEecCCCCeeEEEeecCCe-EEEEeCC-----------CCEE
Q 010296          305 SEVLTIDCLRKER-VLTVG-RDRSMQLWKVP--EESRLVFRAPASSLECCCFISNDE-FLSGSDD-----------GSIE  368 (513)
Q Consensus       305 ~~v~~~~~~~~~~-~~~~~-~d~~i~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----------g~i~  368 (513)
                      ..+.++.|+|++. +++++ .++.+.+|++.  ......+..+...+..++|+|++. |++++.+           +.|.
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence            8899999999986 44444 58899999875  334445556667788999999996 5555554           5699


Q ss_pred             EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC
Q 010296          369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG  444 (513)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg  444 (513)
                      +||+.+++.......                                   ..+...+.+++|+|++++|++++.+.
T Consensus       253 ~~d~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          253 LMDMDGGNVETLFDL-----------------------------------FGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTSCSCEEEEEE-----------------------------------EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEecCCCCceeeecc-----------------------------------CCCCcccccceECCCCCEEEEEEecc
Confidence            999988866443321                                   11122377899999999998887653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=4.2e-22  Score=206.50  Aligned_cols=299  Identities=13%  Similarity=0.062  Sum_probs=199.9

Q ss_pred             ccCCCcccchhhhhccCC---CeEEEEECCCCCeEEEEeC---------CceEEEEeCCCCccccccCCChhhhccCCCC
Q 010296          143 VQKPEATDEFRVLLKHRQ---SVTAVALSEDDSKGFSASK---------DGSILHWDVSSGKGVKYLWPSEEVLKSHGAK  210 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~---~V~~~~~s~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  210 (513)
                      +|+.........+.+|..   .|.+++|||||++|++++.         ++.|++||+.+++.+...             
T Consensus        40 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-------------  106 (719)
T 1z68_A           40 LYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-------------  106 (719)
T ss_dssp             EEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-------------
T ss_pred             EEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-------------
Confidence            344444444444545543   4999999999999998876         789999999988753110             


Q ss_pred             CCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeec-cCcCCCe-----------------EEEEEec
Q 010296          211 DPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF-PGHRGPV-----------------SCLTFRQ  272 (513)
Q Consensus       211 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~  272 (513)
                             .....+..++|||||++|+++. ++.|++|++.+++..... .++...|                 .+++|+|
T Consensus       107 -------~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP  178 (719)
T 1z68_A          107 -------ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP  178 (719)
T ss_dssp             -------CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred             -------ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence                   0123478899999999999986 789999999888765433 2333222                 4899999


Q ss_pred             CCCeEEEEeCCC----------------------------------cEEEEeCCCCcee---E-----EeecccCCeEEE
Q 010296          273 GTSELFSGSFDR----------------------------------TVKIWNAEDRAYI---S-----TLFGHQSEVLTI  310 (513)
Q Consensus       273 ~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~---~-----~~~~~~~~v~~~  310 (513)
                      ||++|++++.|.                                  .|++||+.+++..   .     .+.+|...+..+
T Consensus       179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (719)
T 1z68_A          179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL  258 (719)
T ss_dssp             TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred             CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence            999999887652                                  7889999987653   1     123577789999


Q ss_pred             EeeCCCeEEEEeC-C----CcEEEEe----cCCCeeeEE-----ecCCCCee-----EEEeecCCe-EE--EEeCCC--C
Q 010296          311 DCLRKERVLTVGR-D----RSMQLWK----VPEESRLVF-----RAPASSLE-----CCCFISNDE-FL--SGSDDG--S  366 (513)
Q Consensus       311 ~~~~~~~~~~~~~-d----~~i~iwd----~~~~~~~~~-----~~~~~~v~-----~~~~~~~~~-~~--~~~~dg--~  366 (513)
                      +|+|+++++.... .    ..|.+||    +.++.....     ..+...+.     .+.|+|+|. ++  +...+|  .
T Consensus       259 ~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~  338 (719)
T 1z68_A          259 TWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKH  338 (719)
T ss_dssp             EESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEE
T ss_pred             EEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceE
Confidence            9999998775432 1    2488899    766654422     34555555     789999986 33  344555  4


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---  443 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---  443 (513)
                      |.+|++.+++. ..+..                                     +...+..+.++ +++.|+..+.+   
T Consensus       339 l~~~~~~~~~~-~~lt~-------------------------------------~~~~v~~~~~~-d~~~i~~~~~~~~~  379 (719)
T 1z68_A          339 IHYIKDTVENA-IQITS-------------------------------------GKWEAINIFRV-TQDSLFYSSNEFEE  379 (719)
T ss_dssp             EEEESSCSTTC-EECSC-------------------------------------SSSCEEEEEEE-CSSEEEEEESCGGG
T ss_pred             EEEEECCCCce-Eeccc-------------------------------------CceEEEEEEEE-eCCEEEEEEecCCC
Confidence            66667666552 22221                                     11126677777 77776666554   


Q ss_pred             --CcEEEEEeCCCCc--ceeeeee-cC-cccEEEEEEeecCCCEEEEEecCC--CcccccccCCCc
Q 010296          444 --GSVRLWAIESETK--DIQPLYN-LP-LVGFVNSLAFAKSGQFLIAGVGQE--PRLGRWGHLPAA  501 (513)
Q Consensus       444 --g~v~vwd~~~~~~--~~~~~~~-~~-~~~~v~~v~~sp~~~~l~~~~~~d--g~v~~W~~~~~~  501 (513)
                        +.++||.+.....  ....+.. +. +...+..+.|+|++++|+..++..  ..+.+|+...+.
T Consensus       380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence              8899999875211  1222221 11 445678899999999887654443  567888876554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.3e-20  Score=181.90  Aligned_cols=165  Identities=13%  Similarity=0.053  Sum_probs=131.6

Q ss_pred             ccCCCeEEEEECCCCCeEE----EEeCCceEEEEeCCCCc-----cccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296          157 KHRQSVTAVALSEDDSKGF----SASKDGSILHWDVSSGK-----GVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~----t~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      .|.+.|++++|+|++++|+    +|+.|++|+|||+.++.     ....+             .......+|...|.+++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~h~~~V~~v~  156 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPF-------------AYHKLLKDAGGMVIDMK  156 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCS-------------EEEECCCSGGGSEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCccee-------------eeeeccCCCCCceEEEE
Confidence            4677899999999999999    78889999999987541     10000             00113457899999999


Q ss_pred             EcCC-CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc---
Q 010296          228 VSSD-GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH---  303 (513)
Q Consensus       228 ~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---  303 (513)
                      |+|+ +.+|++++.||+|++||++++..+....+|...|.+++|+|++++|++|+.||.|++||++ +.....+..+   
T Consensus       157 ~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~  235 (434)
T 2oit_A          157 WNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY  235 (434)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC
T ss_pred             ECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCccc
Confidence            9997 8899999999999999999987776777799999999999999999999999999999998 5555554433   


Q ss_pred             ----cCCeEEEEeeCCCeEEEEe--CCC------cEEEEecCCC
Q 010296          304 ----QSEVLTIDCLRKERVLTVG--RDR------SMQLWKVPEE  335 (513)
Q Consensus       304 ----~~~v~~~~~~~~~~~~~~~--~d~------~i~iwd~~~~  335 (513)
                          ...|.++.|++++.++++.  .+|      .+++|++...
T Consensus       236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                2378999999988777433  332      3899999764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=3.3e-20  Score=174.56  Aligned_cols=244  Identities=9%  Similarity=0.070  Sum_probs=167.8

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeC---CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASK---DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      ..+...+..++|+|+|+ |++++.   ++.|.+|++.++......                 ....+...+..++|+|+|
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~-----------------~~~~~~~~p~~~a~spdg   97 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN-----------------TVVAPGTPPAYVAVDEAR   97 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE-----------------EEEEESCCCSEEEEETTT
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee-----------------eeecCCCCCEEEEECCCC
Confidence            35667788999999999 665544   689999999766532210                 112345668899999999


Q ss_pred             CEEEEEe-CCCcEEEEeCCC-c--ceeeeccC---------cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC-CCceeE
Q 010296          233 RYLASGG-LDRHIHLWDTRI-Q--EHIQAFPG---------HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE-DRAYIS  298 (513)
Q Consensus       233 ~~l~s~~-~dg~i~vwd~~~-~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~  298 (513)
                      ++|++++ .++.|.+|++.. +  ..+..+..         +...+.+++|+|+++++++...++.|.+|++. +++...
T Consensus        98 ~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~  177 (347)
T 3hfq_A           98 QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSE  177 (347)
T ss_dssp             TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEE
Confidence            9988887 679999999862 2  22333321         12348899999999955566678899999998 454322


Q ss_pred             --Eeec-ccCCeEEEEeeCCCe-EEE-EeCCCcEEEEecCC--Ceee---EEecCC------CCeeEEEeecCCe-E-EE
Q 010296          299 --TLFG-HQSEVLTIDCLRKER-VLT-VGRDRSMQLWKVPE--ESRL---VFRAPA------SSLECCCFISNDE-F-LS  360 (513)
Q Consensus       299 --~~~~-~~~~v~~~~~~~~~~-~~~-~~~d~~i~iwd~~~--~~~~---~~~~~~------~~v~~~~~~~~~~-~-~~  360 (513)
                        .+.. ....+..++|+|+++ +++ ...++.|.+|++..  +...   ......      ..+..++|+|+|+ + ++
T Consensus       178 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~  257 (347)
T 3hfq_A          178 QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVS  257 (347)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred             eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEE
Confidence              2222 233678899999996 444 44688999999874  3322   122211      3478899999996 4 46


Q ss_pred             EeCCCCEEEEecCCC---CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE
Q 010296          361 GSDDGSIELWSLLRK---KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA  437 (513)
Q Consensus       361 ~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  437 (513)
                      ...++.|.+|++...   +.+..+..                                     +...+..++|+|+|++|
T Consensus       258 ~~~~~~v~v~~~~~~g~~~~~~~~~~-------------------------------------~~~~~~~~~~spdg~~l  300 (347)
T 3hfq_A          258 NRGYNTLAVFAVTADGHLTLIQQIST-------------------------------------EGDFPRDFDLDPTEAFV  300 (347)
T ss_dssp             EETTTEEEEEEECGGGCEEEEEEEEC-------------------------------------SSSCCCEEEECTTSSEE
T ss_pred             eCCCCEEEEEEECCCCcEEEeEEEec-------------------------------------CCCCcCeEEECCCCCEE
Confidence            667899999998732   22333321                                     11227789999999988


Q ss_pred             EEecC-CCcEEEEEeCCC
Q 010296          438 ASGAG-NGSVRLWAIESE  454 (513)
Q Consensus       438 ~~g~~-dg~v~vwd~~~~  454 (513)
                      ++++. ++.|.+|++...
T Consensus       301 ~v~~~~~~~v~v~~~d~~  318 (347)
T 3hfq_A          301 VVVNQNTDNATLYARDLT  318 (347)
T ss_dssp             EEEETTTTEEEEEEECTT
T ss_pred             EEEEcCCCcEEEEEEeCC
Confidence            88765 489999977543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=9.5e-20  Score=172.44  Aligned_cols=262  Identities=6%  Similarity=0.027  Sum_probs=176.2

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCC----ceEEEEeCCCC--ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          158 HRQSVTAVALSEDDSKGFSASKD----GSILHWDVSSG--KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~d----g~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      |...+..++|+|++++|++++.+    +.|.+|++...  ......                 ....+......+++  +
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~-----------------~~~~~~~~p~~~~~--d  108 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN-----------------TQKTMGADPCYLTT--N  108 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE-----------------EEECSSSCEEEEEE--C
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee-----------------EeccCCCCcEEEEE--C
Confidence            77888899999999999999876    79999998753  221110                 01123445777787  7


Q ss_pred             CCEEEEEe-CCCcEEEEeCCCcceeeecc--------------CcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCCCCc
Q 010296          232 GRYLASGG-LDRHIHLWDTRIQEHIQAFP--------------GHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAEDRA  295 (513)
Q Consensus       232 ~~~l~s~~-~dg~i~vwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  295 (513)
                      +++|++++ .++.|.+|++.....+..+.              .+...+.+++|+|++++|++++ .++.|.+|++....
T Consensus       109 g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~  188 (361)
T 3scy_A          109 GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA  188 (361)
T ss_dssp             SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC
T ss_pred             CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC
Confidence            88777776 57899999997544332211              1233468899999999776655 48899999887543


Q ss_pred             e------e-------EEeecccCCeEEEEeeCCCe-EEEEe-CCCcEEEEecCCCeeeE---Ee---cCCCCeeEEEeec
Q 010296          296 Y------I-------STLFGHQSEVLTIDCLRKER-VLTVG-RDRSMQLWKVPEESRLV---FR---APASSLECCCFIS  354 (513)
Q Consensus       296 ~------~-------~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~iwd~~~~~~~~---~~---~~~~~v~~~~~~~  354 (513)
                      .      +       .........+..++|+|+++ +++++ .++.|.+|++.++....   ..   .+......++|+|
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp  268 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP  268 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence            1      1       11223455678999999996 44555 58999999998765421   11   2234567999999


Q ss_pred             CCe-EEEEeC--CCCEEEEecC--CCC--eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEE
Q 010296          355 NDE-FLSGSD--DGSIELWSLL--RKK--PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSS  427 (513)
Q Consensus       355 ~~~-~~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~  427 (513)
                      +|+ ++++..  ++.|.+|++.  +++  .+..+..                                      ...+..
T Consensus       269 dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--------------------------------------g~~~~~  310 (361)
T 3scy_A          269 DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--------------------------------------GIHPRN  310 (361)
T ss_dssp             TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--------------------------------------SSCCCE
T ss_pred             CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--------------------------------------CCCCce
Confidence            997 444444  5899999986  444  2323321                                      112778


Q ss_pred             EEEecCCCEEEEec-CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEee
Q 010296          428 VTVCGGSDLAASGA-GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFA  476 (513)
Q Consensus       428 ~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~s  476 (513)
                      ++|+|+|++|++++ .++.|.+|.+......+..+....+...+.||.|.
T Consensus       311 ~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          311 FIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            99999999888877 67899998776432333333222234568889886

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=3.9e-21  Score=199.26  Aligned_cols=274  Identities=7%  Similarity=0.041  Sum_probs=186.5

Q ss_pred             EEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc---cEEEEEEcCCCCEEEEEe
Q 010296          163 TAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK---HILALAVSSDGRYLASGG  239 (513)
Q Consensus       163 ~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~s~~  239 (513)
                      .+++|+|++.++++ +.|++|++||+.+++....+                   ..|..   .+.+++|||||++|++++
T Consensus        19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~-------------------~~~~~~~~~~~~~~~SpDg~~la~~~   78 (719)
T 1z68_A           19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTIL-------------------SNRTMKSVNASNYGLSPDRQFVYLES   78 (719)
T ss_dssp             CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEE-------------------CHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred             CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEE-------------------ccccccccceeeEEECCCCCeEEEEe
Confidence            37899999965554 46999999999998865533                   12222   388999999999999887


Q ss_pred             C---------CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe-ecccCCe--
Q 010296          240 L---------DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-FGHQSEV--  307 (513)
Q Consensus       240 ~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v--  307 (513)
                      .         ++.|++||+.+++.+.... ....+..++|+|+|+.|+.+. ++.|++|++.+++..... .++...+  
T Consensus        79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~  156 (719)
T 1z68_A           79 DYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFN  156 (719)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEE
T ss_pred             cCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEc
Confidence            6         6899999999888732111 125688999999999999885 789999999888765432 2222222  


Q ss_pred             ---------------EEEEeeCCCeEE-EEeCCC----------------------------------cEEEEecCCCee
Q 010296          308 ---------------LTIDCLRKERVL-TVGRDR----------------------------------SMQLWKVPEESR  337 (513)
Q Consensus       308 ---------------~~~~~~~~~~~~-~~~~d~----------------------------------~i~iwd~~~~~~  337 (513)
                                     .++.|+|+|+.+ +++.+.                                  .|++||+.++..
T Consensus       157 g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~  236 (719)
T 1z68_A          157 GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY  236 (719)
T ss_dssp             SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred             ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence                           489999998544 555432                                  788999987764


Q ss_pred             e---EE------ecCCCCeeEEEeecCCeEEEE-eCC----CCEEEEe----cCCCCeeEEee---cCCCcccCCCCccc
Q 010296          338 L---VF------RAPASSLECCCFISNDEFLSG-SDD----GSIELWS----LLRKKPVYIVK---NAHPLLDGLKNFEQ  396 (513)
Q Consensus       338 ~---~~------~~~~~~v~~~~~~~~~~~~~~-~~d----g~i~iwd----~~~~~~~~~~~---~~~~~~~~~~~~~~  396 (513)
                      .   .+      ..+...+..++|+|+++++.. ...    ..|.+||    +.++++...+.   ..            
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~------------  304 (719)
T 1z68_A          237 VGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES------------  304 (719)
T ss_dssp             HCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC------------
T ss_pred             cceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc------------
Confidence            2   21      245667889999999975533 222    2488888    66665433221   11            


Q ss_pred             CcCccccccCCCCCCCCCCcCCCCCcceEE-----EEEEecCCCEEEE--ecCCC--cEEEEEeCCCCcceeeeeecCcc
Q 010296          397 DEGKISNGHSENGNLNPGSYHSSSAYSWVS-----SVTVCGGSDLAAS--GAGNG--SVRLWAIESETKDIQPLYNLPLV  467 (513)
Q Consensus       397 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l~~--g~~dg--~v~vwd~~~~~~~~~~~~~~~~~  467 (513)
                                              +..++.     .++|+|+|+.|+.  +..+|  .|++|++.++  ....+..  +.
T Consensus       305 ------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~--~~~~lt~--~~  356 (719)
T 1z68_A          305 ------------------------RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE--NAIQITS--GK  356 (719)
T ss_dssp             ------------------------SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST--TCEECSC--SS
T ss_pred             ------------------------CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC--ceEeccc--Cc
Confidence                                    111233     6789999986554  44555  4666666554  2333332  34


Q ss_pred             cEEEEEEeecCCCEEEEEecC----CCcccccccCC
Q 010296          468 GFVNSLAFAKSGQFLIAGVGQ----EPRLGRWGHLP  499 (513)
Q Consensus       468 ~~v~~v~~sp~~~~l~~~~~~----dg~v~~W~~~~  499 (513)
                      ..+..+.++ +++.|+..+..    ++.+++|.+..
T Consensus       357 ~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          357 WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            557777888 88888877555    58899997654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.86  E-value=1.2e-20  Score=181.03  Aligned_cols=290  Identities=9%  Similarity=-0.066  Sum_probs=193.9

Q ss_pred             CCCcccchhhhhccCC-----CeEEEEECCCCCeEEEEeCC---ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCC
Q 010296          145 KPEATDEFRVLLKHRQ-----SVTAVALSEDDSKGFSASKD---GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRA  216 (513)
Q Consensus       145 ~~~~~~~~~~~~~h~~-----~V~~~~~s~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (513)
                      ++.....++.+..+..     .+.+++|+|+|++|+.+...   ..|.+|++.+++.....                   
T Consensus        16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-------------------   76 (396)
T 3c5m_A           16 DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-------------------   76 (396)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-------------------
T ss_pred             cCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-------------------
Confidence            3444444455554433     37889999999998876543   47888899887644321                   


Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEE-------------------EEEecCCCeE
Q 010296          217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSC-------------------LTFRQGTSEL  277 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l  277 (513)
                      ..+......+.|+|+|++|+.++.++.|++|++.+++....+..+......                   +.|+|+++.+
T Consensus        77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~  156 (396)
T 3c5m_A           77 EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWE  156 (396)
T ss_dssp             CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred             cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcce
Confidence            111222223789999999999999999999999988766555544332222                   3456777766


Q ss_pred             EEE-----eCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-CCe-EEEEeCC------CcEEEEecCCCeeeEEecC-
Q 010296          278 FSG-----SFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-KER-VLTVGRD------RSMQLWKVPEESRLVFRAP-  343 (513)
Q Consensus       278 ~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~~~~~~d------~~i~iwd~~~~~~~~~~~~-  343 (513)
                      +.+     ..+..|++||+.+++..... .+...+..+.|+| ++. ++.++.+      ..|.+|++.+.....+..+ 
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~  235 (396)
T 3c5m_A          157 KFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHA  235 (396)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCC
T ss_pred             eeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccC
Confidence            544     35678999999988765444 4677889999999 664 5555433      4688899876654433332 


Q ss_pred             -CCCeeEEEeecCCe-EEEEeCC-----CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCc
Q 010296          344 -ASSLECCCFISNDE-FLSGSDD-----GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSY  416 (513)
Q Consensus       344 -~~~v~~~~~~~~~~-~~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  416 (513)
                       ...+..+.|+|+|. |+.++.+     +.|++||+.+++.......                                 
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---------------------------------  282 (396)
T 3c5m_A          236 EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---------------------------------  282 (396)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---------------------------------
T ss_pred             CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---------------------------------
Confidence             22477789999996 5554433     3499999988875443221                                 


Q ss_pred             CCCCCcceEEEEEEec-CCCEEEEec----------------CCCcEEEEEeCCCCcceeeeeecCccc-----------
Q 010296          417 HSSSAYSWVSSVTVCG-GSDLAASGA----------------GNGSVRLWAIESETKDIQPLYNLPLVG-----------  468 (513)
Q Consensus       417 ~~~~~~~~i~~~~~s~-~~~~l~~g~----------------~dg~v~vwd~~~~~~~~~~~~~~~~~~-----------  468 (513)
                        ..    .. +.|+| +|++|++++                .++.|++||+.++.  ...+..  +..           
T Consensus       283 --~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~l~~--~~~~~~~~~~~~~~  351 (396)
T 3c5m_A          283 --PP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS--AQKLCK--HSTSWDVLDGDRQI  351 (396)
T ss_dssp             --CS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB--CCEEEE--CCCCCCCBTTBSST
T ss_pred             --CC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc--eEEccC--CCCccccccccccC
Confidence              00    33 88999 999888754                34789999998762  233332  222           


Q ss_pred             EEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          469 FVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .+..++|+|+|++|+.++..++...+|.+.
T Consensus       352 ~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          352 THPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             TCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            256678999999998886777887787654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=1.8e-20  Score=189.22  Aligned_cols=230  Identities=10%  Similarity=0.002  Sum_probs=164.0

Q ss_pred             cccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC---CCcEEEEeCCC--
Q 010296          220 SKHILALAVSSDGRYLASGGL-DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---DRTVKIWNAED--  293 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~--  293 (513)
                      ..+|++++|+|||++||+++. +|++.||++.+++..+....+...+..++|+|+ +.+++++.   +....+|.+..  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            456999999999999999887 999999999766654444333368999999999 77777765   45555654432  


Q ss_pred             -CceeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCC----C
Q 010296          294 -RAYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDD----G  365 (513)
Q Consensus       294 -~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d----g  365 (513)
                       +... .+... ..+...+|+|++  .+++.+.++.+.+||+.++....+..+..  ..++|+|+|+ +++++.+    +
T Consensus       100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A          100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred             CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence             2222 33322 234456777765  45566666667799999887665444333  7899999997 5556655    7


Q ss_pred             CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC-
Q 010296          366 SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG-  444 (513)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg-  444 (513)
                      .|++||+.+++.. .+.                                     .+...+..++|||||++|+++..+| 
T Consensus       176 ~i~~~d~~~g~~~-~l~-------------------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~  217 (582)
T 3o4h_A          176 SLFTSNLSSGGLR-VFD-------------------------------------SGEGSFSSASISPGMKVTAGLETARE  217 (582)
T ss_dssp             EEEEEETTTCCCE-EEC-------------------------------------CSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred             EEEEEcCCCCCce-Eee-------------------------------------cCCCccccceECCCCCEEEEccCCCe
Confidence            7999999888765 332                                     2233489999999999999888888 


Q ss_pred             -cEEEEEeCCCCcceeeeeecCcccEEEEEE--------eecCCCEEEEEecCCCccccccc
Q 010296          445 -SVRLWAIESETKDIQPLYNLPLVGFVNSLA--------FAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       445 -~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~--------~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                       .|++||+.++.. . .+..  +...+..++        |+|||.+++++ +.++++++|.+
T Consensus       218 ~~i~~~d~~~~~~-~-~~~~--~~~~~~~~~~~~~~~~~~spdg~~~~~~-~~~g~~~l~~~  274 (582)
T 3o4h_A          218 ARLVTVDPRDGSV-E-DLEL--PSKDFSSYRPTAITWLGYLPDGRLAVVA-RREGRSAVFID  274 (582)
T ss_dssp             EEEEEECTTTCCE-E-ECCC--SCSHHHHHCCSEEEEEEECTTSCEEEEE-EETTEEEEEET
T ss_pred             eEEEEEcCCCCcE-E-EccC--CCcChhhhhhccccceeEcCCCcEEEEE-EcCCcEEEEEE
Confidence             899999988732 2 2222  444455555        99999666666 88999999987

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=2.7e-19  Score=169.37  Aligned_cols=248  Identities=9%  Similarity=0.058  Sum_probs=167.5

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CcceeeeccCc-CCCeEEEEEecCCCe--EEEEe-------------CC
Q 010296          221 KHILALAVSSDGRYLASGGLDRHIHLWDTR-IQEHIQAFPGH-RGPVSCLTFRQGTSE--LFSGS-------------FD  283 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~d  283 (513)
                      ..+..++|+|++++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++  ++++.             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            357789999999999998887 99999987 77664432211 123556899999995  44553             68


Q ss_pred             CcEEEEeCC-CCceeEEee----cccCCeEEEEeeCCCeEE-EEe-CCCcEEEEecC-CCeee---EEe--cCCCCeeEE
Q 010296          284 RTVKIWNAE-DRAYISTLF----GHQSEVLTIDCLRKERVL-TVG-RDRSMQLWKVP-EESRL---VFR--APASSLECC  350 (513)
Q Consensus       284 g~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~-~~~-~d~~i~iwd~~-~~~~~---~~~--~~~~~v~~~  350 (513)
                      +.+.+|++. .++....+.    .+...+.+++|+|+++++ ++. .++.|++|++. +++..   ...  .+...+..+
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~  198 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence            999999997 455544333    245678999999999644 544 36799999998 55543   122  135678899


Q ss_pred             EeecCCe-EEEEe-CCCCEEEEecC--CCCeeE---EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc-
Q 010296          351 CFISNDE-FLSGS-DDGSIELWSLL--RKKPVY---IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY-  422 (513)
Q Consensus       351 ~~~~~~~-~~~~~-~dg~i~iwd~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-  422 (513)
                      +|+|+|+ +++++ .++.|.+|++.  +++...   .+.......                              ..+. 
T Consensus       199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~------------------------------~g~~~  248 (365)
T 1jof_A          199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI------------------------------PDRDP  248 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC------------------------------CCBCT
T ss_pred             EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc------------------------------CCccc
Confidence            9999996 44544 47899999875  455432   221110000                              0111 


Q ss_pred             -----ceEEEEE-EecCCCEEEEecCC-C-----cEEEEEeCCCCcceeeee-ecC-cccEEEEEEeec---CCCEEEEE
Q 010296          423 -----SWVSSVT-VCGGSDLAASGAGN-G-----SVRLWAIESETKDIQPLY-NLP-LVGFVNSLAFAK---SGQFLIAG  485 (513)
Q Consensus       423 -----~~i~~~~-~s~~~~~l~~g~~d-g-----~v~vwd~~~~~~~~~~~~-~~~-~~~~v~~v~~sp---~~~~l~~~  485 (513)
                           ..+..++ |+|+|++|++++.+ +     .|.+|++..... +..+. ..+ +...+..++|+|   +|++|+++
T Consensus       249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~  327 (365)
T 1jof_A          249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence                 1488999 99999998877643 2     899999963212 22211 111 233466789999   89999999


Q ss_pred             ecCCCcccccccCCC
Q 010296          486 VGQEPRLGRWGHLPA  500 (513)
Q Consensus       486 ~~~dg~v~~W~~~~~  500 (513)
                      ...++.|.+|++...
T Consensus       328 ~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          328 DDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSSCEEEEEEEETT
T ss_pred             EcCCCeEEEEEEchh
Confidence            556699999988765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=5.8e-19  Score=183.02  Aligned_cols=281  Identities=10%  Similarity=0.054  Sum_probs=183.6

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      .....+++|+|++.+|+++  |++|++|++.+++....+...              ....+......++|||||++|+++
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~Spdg~~l~~~   79 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENS--------------TFDEFGHSINDYSISPDGQFILLE   79 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTT--------------TTTTCCSCCCEEEECTTSSEEEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEech--------------hhhhhcccccceEECCCCCEEEEE
Confidence            3456789999999988886  899999999998865433110              001122223458999999999998


Q ss_pred             eCC---------CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe-ecccCCe-
Q 010296          239 GLD---------RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-FGHQSEV-  307 (513)
Q Consensus       239 ~~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v-  307 (513)
                      +.+         +.+.+||+.+++.. .+..|...+...+|||+|+.|+.+. ++.|++|++.++...... .++...+ 
T Consensus        80 ~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~  157 (740)
T 4a5s_A           80 YNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIY  157 (740)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred             ECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcccee
Confidence            865         56779999998865 4666788899999999999998884 689999999887754322 2222222 


Q ss_pred             ----------------EEEEeeCCCe-EEEEeCC------------------------------------CcEEEEecCC
Q 010296          308 ----------------LTIDCLRKER-VLTVGRD------------------------------------RSMQLWKVPE  334 (513)
Q Consensus       308 ----------------~~~~~~~~~~-~~~~~~d------------------------------------~~i~iwd~~~  334 (513)
                                      ..+.|+|||+ |+.++.|                                    ..|++||+.+
T Consensus       158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~  237 (740)
T 4a5s_A          158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS  237 (740)
T ss_dssp             ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred             cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence                            3588999996 4444321                                    1588899988


Q ss_pred             ---C---eeeEEec------CCCCeeEEEeecCCe-EEEEe----CCCCEEEEecCCCCe----eE---EeecCCCcccC
Q 010296          335 ---E---SRLVFRA------PASSLECCCFISNDE-FLSGS----DDGSIELWSLLRKKP----VY---IVKNAHPLLDG  390 (513)
Q Consensus       335 ---~---~~~~~~~------~~~~v~~~~~~~~~~-~~~~~----~dg~i~iwd~~~~~~----~~---~~~~~~~~~~~  390 (513)
                         +   ....+..      +...+..++|+|+|+ ++...    .+..|.+||+.+++.    ..   .+...      
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~------  311 (740)
T 4a5s_A          238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS------  311 (740)
T ss_dssp             CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC------
T ss_pred             CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc------
Confidence               6   4444332      566788999999998 33322    234699999988872    11   11111      


Q ss_pred             CCCcccCcCccccccCCCCCCCCCCcCCCCCcce-----EEEEEEecCCCEEE-Eec-CCC--cEEEEEeCCCCcceeee
Q 010296          391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW-----VSSVTVCGGSDLAA-SGA-GNG--SVRLWAIESETKDIQPL  461 (513)
Q Consensus       391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~-~g~-~dg--~v~vwd~~~~~~~~~~~  461 (513)
                                                    +..+     ...++|+|||+.|+ ..+ .+|  .|++|++..+  ....+
T Consensus       312 ------------------------------~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~--~~~~l  359 (740)
T 4a5s_A          312 ------------------------------TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK--DCTFI  359 (740)
T ss_dssp             ------------------------------SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS--SCEES
T ss_pred             ------------------------------CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC--ceEec
Confidence                                          1111     23578999999876 554 344  5788887765  22333


Q ss_pred             eecCcccEEEEEEeecCCCEEEEEecC----CCcccccccC
Q 010296          462 YNLPLVGFVNSLAFAKSGQFLIAGVGQ----EPRLGRWGHL  498 (513)
Q Consensus       462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~----dg~v~~W~~~  498 (513)
                      ..  ....|..+. .+|++.|+..+..    .+...||.+.
T Consensus       360 T~--g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~  397 (740)
T 4a5s_A          360 TK--GTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQ  397 (740)
T ss_dssp             CC--SSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             cc--CCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEE
Confidence            32  233455443 2456666655344    3456666543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=1.3e-18  Score=164.77  Aligned_cols=244  Identities=9%  Similarity=0.066  Sum_probs=164.7

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCC-CCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE--
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVS-SGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY--  234 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--  234 (513)
                      +...+..++|+|++++|++++.+ .|.+|++. +++.....       .          ...+ ..+.+++|+|+|++  
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-------~----------~~~~-g~~~~~~~spdg~~l~   98 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-------S----------HPIG-GHPRANDADTNTRAIF   98 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-------E----------EECC-SSGGGGCTTSCCEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-------E----------eecC-CCCccEEECCCCCEEE
Confidence            34568899999999999999888 99999997 66543211       0          0000 12345889999994  


Q ss_pred             EEEEe-------------CCCcEEEEeCC-Ccceeeecc----CcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCC-CC
Q 010296          235 LASGG-------------LDRHIHLWDTR-IQEHIQAFP----GHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAE-DR  294 (513)
Q Consensus       235 l~s~~-------------~dg~i~vwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~-~~  294 (513)
                      ++++.             .+|.+.+|++. .++....+.    .+...+.+++|+|+|++|+++.. ++.|++|++. ++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g  178 (365)
T 1jof_A           99 LLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG  178 (365)
T ss_dssp             EEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred             EEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC
Confidence            44553             68999999997 465543333    24567999999999998887664 6799999998 67


Q ss_pred             cee--EEee--cccCCeEEEEeeCCCeEE-EEe-CCCcEEEEecC--CCeee----EEec-CC-----C-------CeeE
Q 010296          295 AYI--STLF--GHQSEVLTIDCLRKERVL-TVG-RDRSMQLWKVP--EESRL----VFRA-PA-----S-------SLEC  349 (513)
Q Consensus       295 ~~~--~~~~--~~~~~v~~~~~~~~~~~~-~~~-~d~~i~iwd~~--~~~~~----~~~~-~~-----~-------~v~~  349 (513)
                      +..  ..+.  .+...+..++|+|+++++ +++ .++.|.+|++.  ++...    .... +.     .       .+..
T Consensus       179 ~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  258 (365)
T 1jof_A          179 EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD  258 (365)
T ss_dssp             CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred             CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccccc
Confidence            643  2333  235668999999999544 555 47899999875  34321    1111 11     1       4778


Q ss_pred             EE-eecCCe-EEEEeC-CC-----CEEEEecC-CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCC
Q 010296          350 CC-FISNDE-FLSGSD-DG-----SIELWSLL-RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSS  420 (513)
Q Consensus       350 ~~-~~~~~~-~~~~~~-dg-----~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  420 (513)
                      ++ |+|+|+ ++++.. ..     .|.+|++. +++........                                  ..
T Consensus       259 i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~----------------------------------~~  304 (365)
T 1jof_A          259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS----------------------------------PT  304 (365)
T ss_dssp             EEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE----------------------------------EC
T ss_pred             EEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee----------------------------------ec
Confidence            99 999996 444433 22     89999996 56543321100                                  00


Q ss_pred             CcceEEEEEEec---CCCEEEEecCC-CcEEEEEeCCC
Q 010296          421 AYSWVSSVTVCG---GSDLAASGAGN-GSVRLWAIESE  454 (513)
Q Consensus       421 ~~~~i~~~~~s~---~~~~l~~g~~d-g~v~vwd~~~~  454 (513)
                      +...+..++|+|   +|++|++++.+ +.|.||++...
T Consensus       305 ~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            001145688999   89999998864 89999999765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=5.6e-19  Score=166.18  Aligned_cols=255  Identities=11%  Similarity=0.087  Sum_probs=166.3

Q ss_pred             cCCCcccchhhhhccC-CCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          144 QKPEATDEFRVLLKHR-QSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~-~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      ++.........+..+. ..+..++|+|++++++ ++..++.|.+||+.+++....+....             ....+..
T Consensus        26 ~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~-------------~~~~~~~   92 (349)
T 1jmx_B           26 VDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS-------------VPGEVGR   92 (349)
T ss_dssp             EETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC-------------STTEEEE
T ss_pred             EECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc-------------ccccccc
Confidence            4444444444444332 2588999999998765 55578999999999887665431000             0000023


Q ss_pred             cEEEEEEcCCCCEEEEEeCC------------CcEEEEeCCCccee---eeccCcCCCeEEEEEecCCCeEEEEeCCCcE
Q 010296          222 HILALAVSSDGRYLASGGLD------------RHIHLWDTRIQEHI---QAFPGHRGPVSCLTFRQGTSELFSGSFDRTV  286 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~d------------g~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  286 (513)
                      .+.+++|+|+|++|++++.+            +.|.+||+.+++..   ..+. +...+.+++|+|+++ +++++  +.|
T Consensus        93 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i  168 (349)
T 1jmx_B           93 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDI  168 (349)
T ss_dssp             CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSE
T ss_pred             cccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcE
Confidence            47789999999999998865            89999999885543   3333 344688999999999 66654  349


Q ss_pred             EEEeCCCCceeEEeecccC------------------------CeEEEEeeCCCeEE--EEeCCCcEEEEecCCCeee--
Q 010296          287 KIWNAEDRAYISTLFGHQS------------------------EVLTIDCLRKERVL--TVGRDRSMQLWKVPEESRL--  338 (513)
Q Consensus       287 ~iwd~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~--~~~~d~~i~iwd~~~~~~~--  338 (513)
                      .+||+.+++.+..+..+..                        ....+.+++++...  .......+..++..++...  
T Consensus       169 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (349)
T 1jmx_B          169 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ  248 (349)
T ss_dssp             EEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred             EEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec
Confidence            9999999988776643320                        22344554432100  0000011112333333222  


Q ss_pred             EEecCCCCeeEEEeec-CCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcC
Q 010296          339 VFRAPASSLECCCFIS-NDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYH  417 (513)
Q Consensus       339 ~~~~~~~~v~~~~~~~-~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  417 (513)
                      ........+..++++| ++.++..+ ++.|.+||+.+++.+..+.....                               
T Consensus       249 ~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~-------------------------------  296 (349)
T 1jmx_B          249 EFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHT-------------------------------  296 (349)
T ss_dssp             EEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSC-------------------------------
T ss_pred             ccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCC-------------------------------
Confidence            1222455678899999 88644333 89999999999988777753221                               


Q ss_pred             CCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          418 SSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       418 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                             +.+++|+|++++|++++.++.|++||+.+.
T Consensus       297 -------~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          297 -------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             -------CCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             -------ccceEECCCCCEEEEecCCCeEEEEecccc
Confidence                   678999999999988888999999999876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=4.6e-18  Score=160.10  Aligned_cols=274  Identities=7%  Similarity=0.007  Sum_probs=182.0

Q ss_pred             CCCeEEEEe------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC---
Q 010296          170 DDSKGFSAS------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL---  240 (513)
Q Consensus       170 ~~~~l~t~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---  240 (513)
                      +++++++..      .|+.|.+||..+++.+..+                   ..+..+  .++|+|++++|++++.   
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-------------------~~g~~p--~i~~spdg~~lyv~~~~~~   72 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-------------------PTAFNG--HVQVSNDGKKIYTMTTYHE   72 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-------------------ECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-------------------cCCCCC--ceEECCCCCEEEEEEeccc
Confidence            555666543      3779999999988876544                   223333  8999999999998863   


Q ss_pred             -------CCcEEEEeCCCcceeeeccCc------CCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEE-eeccc
Q 010296          241 -------DRHIHLWDTRIQEHIQAFPGH------RGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYIST-LFGHQ  304 (513)
Q Consensus       241 -------dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~  304 (513)
                             ++.|.+||+.+++.+..+...      ......++|+|+|++|+++..  ++.|.+||+.+++.+.. +. ..
T Consensus        73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~  151 (361)
T 2oiz_A           73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AA  151 (361)
T ss_dssp             TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GT
T ss_pred             ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CC
Confidence                   567999999998888776532      345678999999999998864  68999999999988777 54 22


Q ss_pred             CCeEEEEeeCCC--eEEEEeCCCcEEEEecCC-Ceee-EE-----ecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCC
Q 010296          305 SEVLTIDCLRKE--RVLTVGRDRSMQLWKVPE-ESRL-VF-----RAPASSLECCCFISND-EFLSGSDDGSIELWSLLR  374 (513)
Q Consensus       305 ~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~-~~~~-~~-----~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~  374 (513)
                       ....+.+.|.+  .+++.+.||.+.+|++.. ++.. ..     .........+.+++++ .++..+.++.|.++|+..
T Consensus       152 -~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~  230 (361)
T 2oiz_A          152 -GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSG  230 (361)
T ss_dssp             -TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred             -CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecC
Confidence             22335566754  677888999999999865 3332 11     1111111223334555 456667889999999876


Q ss_pred             CCee--EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC----------
Q 010296          375 KKPV--YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG----------  442 (513)
Q Consensus       375 ~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~----------  442 (513)
                      ....  ..+......            ....               .........++|+|+++.++++..          
T Consensus       231 ~~~~~~~~~~~~~~~------------~~~~---------------~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~  283 (361)
T 2oiz_A          231 DEVKVDGPWSLLNDE------------DKAK---------------NWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKF  283 (361)
T ss_dssp             SSCEEEEEEESCCHH------------HHHT---------------TCEECCSSCEEEETTTTEEEEEEESSCCTTCTTC
T ss_pred             CCceecccccccCcc------------cccc---------------ccccCCeeEEEEecCCCeEEEEEccCCCcccccC
Confidence            5422  122110000            0000               000000123689999888776543          


Q ss_pred             -CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          443 -NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       443 -dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                       .+.|.+||+.+. +.+..+   +... +.+++|+|+|++|+++ +. +.|.+||..++
T Consensus       284 ~~~~v~viD~~t~-~~v~~i---~~~~-p~~ia~spdg~~l~v~-n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          284 PAAEIWVMDTKTK-QRVARI---PGRD-ALSMTIDQQRNLMLTL-DG-GNVNVYDISQP  335 (361)
T ss_dssp             CCSEEEEEETTTT-EEEEEE---ECTT-CCEEEEETTTTEEEEE-CS-SCEEEEECSSS
T ss_pred             CCceEEEEECCCC-cEEEEE---ecCC-eeEEEECCCCCEEEEe-CC-CeEEEEECCCC
Confidence             347999999887 333333   3334 9999999999999988 55 99999998776

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=3.2e-17  Score=152.68  Aligned_cols=242  Identities=10%  Similarity=0.104  Sum_probs=180.8

Q ss_pred             CCCeEEEEECCCCCeEEEEeCC------------------------ceEEEEeCCCCccccccCCChhhhccCCCCCCCC
Q 010296          159 RQSVTAVALSEDDSKGFSASKD------------------------GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQG  214 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (513)
                      -+.|.+|+++|+|+++++...+                        ++|.+||..+++....+                 
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-----------------   85 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-----------------   85 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence            5779999999999999888777                        47999999888765433                 


Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-eeeec---------cCcCCCeEEEEEec-CCCeEEEEe-C
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE-HIQAF---------PGHRGPVSCLTFRQ-GTSELFSGS-F  282 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~  282 (513)
                       ...+...+..|+++|+|+++++...++.|++|+..... .+..+         ..+......++|+| ++.++++.+ .
T Consensus        86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~  164 (329)
T 3fvz_A           86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC  164 (329)
T ss_dssp             -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred             -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence             11334568899999999988888889999999976442 44444         23455789999999 777777776 6


Q ss_pred             CCcEEEEeCCCCceeEEeec----------ccCCeEEEEeeCC-CeEEEE-eCCCcEEEEecCCCeeeEEe---cCCCCe
Q 010296          283 DRTVKIWNAEDRAYISTLFG----------HQSEVLTIDCLRK-ERVLTV-GRDRSMQLWKVPEESRLVFR---APASSL  347 (513)
Q Consensus       283 dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~~~~-~~d~~i~iwd~~~~~~~~~~---~~~~~v  347 (513)
                      ++.|++|+ .++..+..+..          +-..+..+++.|+ +.++++ ..++.|++|+..++..+...   .+...+
T Consensus       165 ~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~  243 (329)
T 3fvz_A          165 NSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNV  243 (329)
T ss_dssp             CCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred             CCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCc
Confidence            89999999 46666666632          2234789999998 777655 46789999999866655332   344567


Q ss_pred             eEEEeecCCeEE-EE-------eCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCC
Q 010296          348 ECCCFISNDEFL-SG-------SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSS  419 (513)
Q Consensus       348 ~~~~~~~~~~~~-~~-------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  419 (513)
                      ..++++| +.++ +.       ..+..|++|++.+++.+..+...                                  .
T Consensus       244 ~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----------------------------------~  288 (329)
T 3fvz_A          244 FAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV----------------------------------R  288 (329)
T ss_dssp             EEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS----------------------------------S
T ss_pred             ceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC----------------------------------C
Confidence            8899999 5433 22       23458999999999988876421                                  1


Q ss_pred             CCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          420 SAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       420 ~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .+...+..|+++|+|.++++...++.|++|++...
T Consensus       289 ~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          289 KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             SCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             CccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            22233889999999988888899999999998653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=2.2e-18  Score=164.78  Aligned_cols=239  Identities=13%  Similarity=-0.022  Sum_probs=165.5

Q ss_pred             EEEcCCCCEEEEEeC-CC--cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296          226 LAVSSDGRYLASGGL-DR--HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       226 ~~~s~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      .+|+|||++|+.++. ++  .|.+||+.+++......++...+..+.|+|+++.|+.++.++.|++||+.+++....+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            789999999999887 66  488899999988877777766666788999999999999999999999999887666655


Q ss_pred             ccCCeEEEE--eeCCCeEEEE-----------------------eCCCcEEEEecCCCeeeEEecCCCCeeEEEeec-CC
Q 010296          303 HQSEVLTID--CLRKERVLTV-----------------------GRDRSMQLWKVPEESRLVFRAPASSLECCCFIS-ND  356 (513)
Q Consensus       303 ~~~~v~~~~--~~~~~~~~~~-----------------------~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~  356 (513)
                      +...+....  +++++.++++                       ..+..|++||+.++....+..+...+..+.|+| +|
T Consensus       121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg  200 (388)
T 3pe7_A          121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDD  200 (388)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEE
T ss_pred             hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCC
Confidence            555454443  4788876653                       234789999999887776666677789999999 88


Q ss_pred             e-EEEEeC------CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEE
Q 010296          357 E-FLSGSD------DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVT  429 (513)
Q Consensus       357 ~-~~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~  429 (513)
                      . ++....      ...|.++++.++... .+....                                   ....+..++
T Consensus       201 ~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~-----------------------------------~~~~~~~~~  244 (388)
T 3pe7_A          201 STVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHA-----------------------------------EGESCTHEF  244 (388)
T ss_dssp             EEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCC-----------------------------------TTEEEEEEE
T ss_pred             CEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCC-----------------------------------CCcccccce
Confidence            6 554443      236777787655432 221110                                   012377889


Q ss_pred             EecCCCEEEEecC-CC----cEEEEEeCCCCcceeeeeecCcccE----EEEEEeecCCCEEEEEe--------cCCCcc
Q 010296          430 VCGGSDLAASGAG-NG----SVRLWAIESETKDIQPLYNLPLVGF----VNSLAFAKSGQFLIAGV--------GQEPRL  492 (513)
Q Consensus       430 ~s~~~~~l~~g~~-dg----~v~vwd~~~~~~~~~~~~~~~~~~~----v~~v~~sp~~~~l~~~~--------~~dg~v  492 (513)
                      |+|+|+.|+..+. ++    .|++||+.++..  ..+...+....    ...++|+|||++|+...        ..+..|
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i  322 (388)
T 3pe7_A          245 WVPDGSALVYVSYLKGSPDRFIYSADPETLEN--RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL  322 (388)
T ss_dssp             ECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred             ECCCCCEEEEEecCCCCCcceEEEEecCCCce--EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence            9999997765443 22    399999988732  22222221001    11237999999888653        445689


Q ss_pred             cccccCCCcc
Q 010296          493 GRWGHLPAAR  502 (513)
Q Consensus       493 ~~W~~~~~~~  502 (513)
                      .+|+...+..
T Consensus       323 ~~~d~~~~~~  332 (388)
T 3pe7_A          323 YVFNMKNGTQ  332 (388)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEeccCCce
Confidence            9999877543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.81  E-value=1.8e-17  Score=154.38  Aligned_cols=244  Identities=11%  Similarity=0.039  Sum_probs=177.0

Q ss_pred             cccEEEEEEcCCCCEEEEEeCC------------------------CcEEEEeCCCcceeeecc-CcCCCeEEEEEecCC
Q 010296          220 SKHILALAVSSDGRYLASGGLD------------------------RHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQGT  274 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~  274 (513)
                      ...+.+|+++|+|+++++...+                        +.|.+||..+++.+..+. .+......++++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4569999999999999888776                        479999999888876654 345678999999999


Q ss_pred             CeEEEEeCCCcEEEEeCCCCc-eeEEe---------ecccCCeEEEEeeC-CCeEEEEe--CCCcEEEEecCCCeeeEEe
Q 010296          275 SELFSGSFDRTVKIWNAEDRA-YISTL---------FGHQSEVLTIDCLR-KERVLTVG--RDRSMQLWKVPEESRLVFR  341 (513)
Q Consensus       275 ~~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~~~~~--~d~~i~iwd~~~~~~~~~~  341 (513)
                      +++++...++.|++|+..... .+..+         ..+...+..+++.| ++.++++.  .++.|++|+........+.
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~  182 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWG  182 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEEC
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEec
Confidence            988888889999999986542 44444         23344688999999 78777665  4899999995443333332


Q ss_pred             c----------CCCCeeEEEeecC-Ce-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCC
Q 010296          342 A----------PASSLECCCFISN-DE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENG  409 (513)
Q Consensus       342 ~----------~~~~v~~~~~~~~-~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  409 (513)
                      .          +...+..++++|+ +. +++...++.|++|+..+++.+..+...                         
T Consensus       183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-------------------------  237 (329)
T 3fvz_A          183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-------------------------  237 (329)
T ss_dssp             EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-------------------------
T ss_pred             cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-------------------------
Confidence            1          1234788999998 76 556678899999999988888877532                         


Q ss_pred             CCCCCCcCCCCCcceEEEEEEec------CCCEEEEecCCCcEEEEEeCCCCcceeeeee-cCcccEEEEEEeecCCCEE
Q 010296          410 NLNPGSYHSSSAYSWVSSVTVCG------GSDLAASGAGNGSVRLWAIESETKDIQPLYN-LPLVGFVNSLAFAKSGQFL  482 (513)
Q Consensus       410 ~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l  482 (513)
                                .+...+..++|+|      +|+.+++...+..|++|++.++ ..+..+.. ..+...+.+|+++|+|.++
T Consensus       238 ----------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~~p~~ia~~~dG~ly  306 (329)
T 3fvz_A          238 ----------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG-EIIDVFKPVRKHFDMPHDIVASEDGTVY  306 (329)
T ss_dssp             ----------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC-CEEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred             ----------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC-eEEEEEcCCCCccCCeeEEEECCCCCEE
Confidence                      1122377888888      3333333445568999999887 33333321 1245668999999999555


Q ss_pred             EEEecCCCcccccccCCC
Q 010296          483 IAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       483 ~~~~~~dg~v~~W~~~~~  500 (513)
                      ++. ..+++|++|+....
T Consensus       307 vad-~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          307 IGD-AHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEE-SSSCCEEEEEEEEC
T ss_pred             EEE-CCCCEEEEEeCCcc
Confidence            555 78889999987543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=8.3e-17  Score=146.81  Aligned_cols=244  Identities=10%  Similarity=0.124  Sum_probs=174.4

Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc------CcCCCeEEEEEe-cCCCeEEEEeC-CCcEEE
Q 010296          217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP------GHRGPVSCLTFR-QGTSELFSGSF-DRTVKI  288 (513)
Q Consensus       217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~i  288 (513)
                      .++...+.++++++++.++++...++.|.+|+.. ++.+..+.      ++...+..+++. +++.++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3556679999999999988888889999999987 55555553      244578999995 66655555533 889999


Q ss_pred             EeCCCCceeEEeec-ccCCeEEEEeeCCCeEEEEe-CCCcEEEEecCCCeeeEEe--cCCCCeeEEEeecCCeEE-EEeC
Q 010296          289 WNAEDRAYISTLFG-HQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFR--APASSLECCCFISNDEFL-SGSD  363 (513)
Q Consensus       289 wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~-~~~~  363 (513)
                      |+ .+++.+..+.. +...+..+++.+++.++++. .++.|.+|+........+.  .+...+..+++++++.++ +...
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            99 56666666532 34568999999998777654 5789999997654433333  334568899999999855 5566


Q ss_pred             CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC
Q 010296          364 DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN  443 (513)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  443 (513)
                      ++.|++|+. .++.+..+...                                   .+...+..++++++|+++++...+
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~-----------------------------------g~~~~p~~i~~d~~G~l~v~~~~~  227 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGE-----------------------------------GITNYPIGVGINSNGEILIADNHN  227 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCT-----------------------------------TTSCSEEEEEECTTCCEEEEECSS
T ss_pred             CCEEEEEcC-CCCEEEEEccC-----------------------------------CccCCCcEEEECCCCCEEEEeCCC
Confidence            899999997 44555544321                                   011238899999999998888887


Q ss_pred             C-cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          444 G-SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       444 g-~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      + .|.+|+...  ..+..+........+.+++|+|+|+++++.  .+++|++|+.....+
T Consensus       228 ~~~i~~~~~~g--~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~--~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          228 NFNLTIFTQDG--QLISALESKVKHAQCFDVALMDDGSVVLAS--KDYRLYIYRYVQLAP  283 (286)
T ss_dssp             SCEEEEECTTS--CEEEEEEESSCCSCEEEEEEETTTEEEEEE--TTTEEEEEECSCCCC
T ss_pred             CEEEEEECCCC--CEEEEEcccCCCCcceeEEECCCCcEEEEC--CCCeEEEEEcccccc
Confidence            6 999999543  334444332223347899999999866553  589999998866543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=6.4e-18  Score=157.92  Aligned_cols=275  Identities=9%  Similarity=0.043  Sum_probs=190.2

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ...|.+++|++++..++..+.++.+++|.   +.....+                   ..+...+.+++|+|++++++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~~~~~~~~~g~l~~~~   62 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEI-------------------SKKGLQLEGLNFDRQGQLFLLD   62 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEE-------------------ESSCCCEEEEEECTTSCEEEEE
T ss_pred             ccccceeeecCCccceeEEeecccCcccc---cceeEEE-------------------eccCccccCcEECCCCCEEEEE
Confidence            34578889999988888778888999993   2222221                   2345567899999999988888


Q ss_pred             eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC----CcEEEEeCCCCceeEEee--cccCCeEEEEe
Q 010296          239 GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD----RTVKIWNAEDRAYISTLF--GHQSEVLTIDC  312 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~  312 (513)
                      ..++.|.+||..+++....+..+...+.+++|+++++++++...+    +.|.+||..++.....+.  .....+..+.+
T Consensus        63 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~  142 (333)
T 2dg1_A           63 VFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF  142 (333)
T ss_dssp             TTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE
T ss_pred             CCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEE
Confidence            889999999998887665544466789999999999877777666    689999998876543332  23456899999


Q ss_pred             eCCCeEEEEeCC-------CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCCCEEEEecCC-CCeeEEee
Q 010296          313 LRKERVLTVGRD-------RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDGSIELWSLLR-KKPVYIVK  382 (513)
Q Consensus       313 ~~~~~~~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~i~iwd~~~-~~~~~~~~  382 (513)
                      .|++.++.+...       +.|..|+..++....+......+..++|+|++. ++ +.+.++.|.+|++.+ +..+..+.
T Consensus       143 d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~  222 (333)
T 2dg1_A          143 DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG  222 (333)
T ss_dssp             CTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE
T ss_pred             CCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccccc
Confidence            999988866653       567777766555443333334578899999985 44 555678999999864 33332221


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeee
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLY  462 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~  462 (513)
                      ......     +                        .. ...+..++++++|+++++...++.|.+|+.. + ..+..+.
T Consensus       223 ~~~~~~-----~------------------------~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g-~~~~~~~  270 (333)
T 2dg1_A          223 ATIPYY-----F------------------------TG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G-YPIGQIL  270 (333)
T ss_dssp             EEEEEE-----C------------------------CS-SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-S-CEEEEEE
T ss_pred             ceEEEe-----c------------------------CC-CCCCCceEECCCCCEEEEEcCCCEEEEECCC-C-CEEEEEE
Confidence            000000     0                        00 0237889999999988888788899999984 3 2333332


Q ss_pred             ecCcc-----cEEEEEEeecCCCEEEEEecC
Q 010296          463 NLPLV-----GFVNSLAFAKSGQFLIAGVGQ  488 (513)
Q Consensus       463 ~~~~~-----~~v~~v~~sp~~~~l~~~~~~  488 (513)
                      . +..     ..+.+++|+|+++.|++++..
T Consensus       271 ~-~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          271 I-PGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             C-TTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             c-CCCccccccCcceEEECCCCCEEEEEeCc
Confidence            2 111     168899999998888766343

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=2e-16  Score=144.30  Aligned_cols=246  Identities=9%  Similarity=0.083  Sum_probs=177.1

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE-cCCCCE
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV-SSDGRY  234 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~  234 (513)
                      .+|-..+.+|+++|++.++++...++.|.+|+.. +..+..+..             ......+...+..+++ .+++.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~l   91 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGDI   91 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCeE
Confidence            3567789999999999988888889999999987 444333210             0011234567899999 467776


Q ss_pred             EEEEeC-CCcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee--cccCCeEEE
Q 010296          235 LASGGL-DRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF--GHQSEVLTI  310 (513)
Q Consensus       235 l~s~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~  310 (513)
                      +++... ++.|.+|+ .+++.+..+.. +...+.+++++++++++++...++.|.+|+.. ++.+..+.  .+...+..+
T Consensus        92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i  169 (286)
T 1q7f_A           92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGV  169 (286)
T ss_dssp             EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEE
T ss_pred             EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEE
Confidence            666543 78999999 56776666543 44678999999999877777778999999964 55555553  344568999


Q ss_pred             EeeCCCeEEEEe-CCCcEEEEecCCCeeeEEecC--CCCeeEEEeecCCeEE-EEeCCC-CEEEEecCCCCeeEEeecCC
Q 010296          311 DCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAP--ASSLECCCFISNDEFL-SGSDDG-SIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       311 ~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~-~~~~dg-~i~iwd~~~~~~~~~~~~~~  385 (513)
                      ++.+++.++++. .++.|++|+........+...  ...+..++++++|.++ +...++ .|.+|+. +++.+..+....
T Consensus       170 ~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~  248 (286)
T 1q7f_A          170 VVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV  248 (286)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred             EECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC
Confidence            999999877554 588999999865444344332  2568899999999755 444554 9999995 566666554321


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .                                   ...+.+++++|+|+++++ +.++.|++|++...
T Consensus       249 ~-----------------------------------~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          249 K-----------------------------------HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             C-----------------------------------CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             C-----------------------------------CCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            1                                   112789999999987777 56899999998654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=9.5e-18  Score=157.94  Aligned_cols=276  Identities=11%  Similarity=0.053  Sum_probs=186.1

Q ss_pred             CCCcccchhhhhccCCCeEEEEECCCCCeEEEEe----------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCC
Q 010296          145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSAS----------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQG  214 (513)
Q Consensus       145 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (513)
                      +....+.+..+..+..+  .++|+|++++|++++          .+++|.+||+.+++.+..+....             
T Consensus        37 D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~-------------  101 (361)
T 2oiz_A           37 DYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP-------------  101 (361)
T ss_dssp             ETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT-------------
T ss_pred             ECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc-------------
Confidence            33444445556556555  899999999999886          36789999999888766541000             


Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcceeee-ccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEe
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGL--DRHIHLWDTRIQEHIQA-FPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWN  290 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd  290 (513)
                      ....+......++|+|+|++|+++..  ++.|.+||+.+++.+.. +..  .....+.+.|++ ..+++.+.||.+.+|+
T Consensus       102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~  179 (361)
T 2oiz_A          102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTIN  179 (361)
T ss_dssp             TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred             cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence            00012234567999999999998874  58999999999998887 653  223446677766 5678888999999999


Q ss_pred             CCC-CceeEE------eecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEe---cC----------CCCeeE
Q 010296          291 AED-RAYIST------LFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFR---AP----------ASSLEC  349 (513)
Q Consensus       291 ~~~-~~~~~~------~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~---~~----------~~~v~~  349 (513)
                      +.. ++....      +.....++ .+.+.+++ .++..+.++.|.++|+.........   ..          ......
T Consensus       180 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~  258 (361)
T 2oiz_A          180 LGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNL  258 (361)
T ss_dssp             ECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSC
T ss_pred             ECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeE
Confidence            865 544421      11122222 22334444 5566678899999998755432111   00          112223


Q ss_pred             EEeecCCe-EEEEeC-----------CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcC
Q 010296          350 CCFISNDE-FLSGSD-----------DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYH  417 (513)
Q Consensus       350 ~~~~~~~~-~~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  417 (513)
                      ++++|++. ++++..           .+.|.+||+.+++.+..+....                                
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--------------------------------  306 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--------------------------------  306 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--------------------------------
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--------------------------------
Confidence            68899864 443322           3479999999999988875321                                


Q ss_pred             CCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec-CcccEEEEEEeecCCC
Q 010296          418 SSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL-PLVGFVNSLAFAKSGQ  480 (513)
Q Consensus       418 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~  480 (513)
                             +.+++|+|+|++|++++. +.|.+||+.++  .++.+..+ ........++|+|+|+
T Consensus       307 -------p~~ia~spdg~~l~v~n~-~~v~v~D~~t~--~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          307 -------ALSMTIDQQRNLMLTLDG-GNVNVYDISQP--EPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             -------CCEEEEETTTTEEEEECS-SCEEEEECSSS--SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             -------eeEEEECCCCCEEEEeCC-CeEEEEECCCC--cceeeEEeccCCCCcEEEEecCCCC
Confidence                   678999999999999887 99999999876  22333442 3556678899999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=5.8e-18  Score=173.75  Aligned_cols=291  Identities=8%  Similarity=0.000  Sum_probs=187.6

Q ss_pred             hhhhhccCCCeEEEEECCCCCeEEEE--eCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE-----
Q 010296          152 FRVLLKHRQSVTAVALSEDDSKGFSA--SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL-----  224 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----  224 (513)
                      ...+.+|...|..++|++++-++++.  +.++...||....+.....+                   ..|...+.     
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-------------------~~~~~~~~~~~~~   76 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-------------------LPAPWNVRNRVFE   76 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-------------------SCTTCCBCCCGGG
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-------------------CCCCccccccccc
Confidence            45678899999999999887777776  56889999996444333322                   22222233     


Q ss_pred             ----EEEEc--CCCCE-EEEEeC-CCcEEEEeCC--C-cceeeeccC-----cCCCeEEEEEecCCCeEEEEeCC-----
Q 010296          225 ----ALAVS--SDGRY-LASGGL-DRHIHLWDTR--I-QEHIQAFPG-----HRGPVSCLTFRQGTSELFSGSFD-----  283 (513)
Q Consensus       225 ----~~~~s--~~~~~-l~s~~~-dg~i~vwd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d-----  283 (513)
                          ...|+  |||++ |+.++. +..|.+|++.  . +. ...+..     |...+.+++|+|+|+.|++++.+     
T Consensus        77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~  155 (662)
T 3azo_A           77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG  155 (662)
T ss_dssp             TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred             cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC
Confidence                45555  99998 776654 5667777765  2 43 444544     56778999999999999988876     


Q ss_pred             -----CcEEEEeCCC------CceeEEee-cccCCeEEEEeeCCCeEE-EEeCC--------CcEEEEecC-CC---eee
Q 010296          284 -----RTVKIWNAED------RAYISTLF-GHQSEVLTIDCLRKERVL-TVGRD--------RSMQLWKVP-EE---SRL  338 (513)
Q Consensus       284 -----g~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~d--------~~i~iwd~~-~~---~~~  338 (513)
                           ..|++|++.+      +.. ..+. .+...+..+.|+|+|+.+ .++.+        ..|++|++. ++   ...
T Consensus       156 ~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~  234 (662)
T 3azo_A          156 PSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR  234 (662)
T ss_dssp             TTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred             CCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence                 5899999988      544 4444 556678889999999644 45533        479999998 45   333


Q ss_pred             EE-ecCCCCeeEEEeecCCeE-EEEeCCC--CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCC
Q 010296          339 VF-RAPASSLECCCFISNDEF-LSGSDDG--SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPG  414 (513)
Q Consensus       339 ~~-~~~~~~v~~~~~~~~~~~-~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  414 (513)
                      .+ ..+...+..+.|+|+|.+ +++..++  .|.+|++.+++...... .+....                  .      
T Consensus       235 ~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~------------------~------  289 (662)
T 3azo_A          235 TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFA------------------G------  289 (662)
T ss_dssp             EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSS------------------C------
T ss_pred             EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-cccccc------------------C------
Confidence            33 334678899999999974 4666777  55556655665433221 111000                  0      


Q ss_pred             CcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCE-EEEEecCCCccc
Q 010296          415 SYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQF-LIAGVGQEPRLG  493 (513)
Q Consensus       415 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-l~~~~~~dg~v~  493 (513)
                          ..-...+..++|+|+++++++++. +.++||.+......+..+..  +.+.+..+ |++++.. ++++++.+....
T Consensus       290 ----p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~--~~~~~~~~-~s~~~~~~~~~~~~~~~~~~  361 (662)
T 3azo_A          290 ----PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAG--PWTEWAAT-LTVSGTRAVGVAASPRTAYE  361 (662)
T ss_dssp             ----CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCS--SCCEEEEE-EEEETTEEEEEEEETTEEEE
T ss_pred             ----ccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecC--CCCeEEEE-EecCCCEEEEEEcCCCCCCE
Confidence                000000456899999999999999 99999965533223444432  45667766 1445543 334435554444


Q ss_pred             ccc
Q 010296          494 RWG  496 (513)
Q Consensus       494 ~W~  496 (513)
                      +|.
T Consensus       362 i~~  364 (662)
T 3azo_A          362 VVE  364 (662)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=5.5e-17  Score=152.48  Aligned_cols=256  Identities=13%  Similarity=0.098  Sum_probs=171.9

Q ss_pred             CCeEEEEECCCCCeEEEEe---------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          160 QSVTAVALSEDDSKGFSAS---------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ..+..+++  +|++|+...         .++.|.+|++.++....                    +    ..+..++|+|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp   68 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP   68 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence            45677788  888887542         26789999998876422                    1    3478899999


Q ss_pred             CCCEEEEEeCC---C--cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC----------------------
Q 010296          231 DGRYLASGGLD---R--HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD----------------------  283 (513)
Q Consensus       231 ~~~~l~s~~~d---g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------------  283 (513)
                      +|++|+.++.+   +  .|.+|++.+++.......+ . +..++|+|+++.|+.++.+                      
T Consensus        69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~  146 (347)
T 2gop_A           69 DGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF  146 (347)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred             CCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence            99999887753   2  4888898887766554433 3 9999999999998877632                      


Q ss_pred             -----CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCC------C-cEEEEecCCCeeeEEecCCCCeeEE
Q 010296          284 -----RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRD------R-SMQLWKVPEESRLVFRAPASSLECC  350 (513)
Q Consensus       284 -----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d------~-~i~iwd~~~~~~~~~~~~~~~v~~~  350 (513)
                           ..|++|++.+++.+..+.. . .+..+.|+|++ ++ ++..+      . ...+|.+.++....+..+ ..+..+
T Consensus       147 ~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~  222 (347)
T 2gop_A          147 FDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV  222 (347)
T ss_dssp             ---CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE
T ss_pred             ccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE
Confidence                 5799999998877455554 4 78899999999 55 44433      1 334444334444433333 344433


Q ss_pred             EeecCCe-EEEEeCC--------CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCC
Q 010296          351 CFISNDE-FLSGSDD--------GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSA  421 (513)
Q Consensus       351 ~~~~~~~-~~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  421 (513)
                        +|+|. ++.++.+        ..|.+||  +++.. .+.                                    ..+
T Consensus       223 --spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~------------------------------------~~~  261 (347)
T 2gop_A          223 --DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GIL------------------------------------DEV  261 (347)
T ss_dssp             --EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESS------------------------------------TTC
T ss_pred             --CCCCCEEEEEEccccCCccccceEEEEC--CCceE-ecc------------------------------------ccC
Confidence              88886 6555533        3577777  44432 221                                    112


Q ss_pred             cceEEE-EEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcc-cccccC
Q 010296          422 YSWVSS-VTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRL-GRWGHL  498 (513)
Q Consensus       422 ~~~i~~-~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v-~~W~~~  498 (513)
                      ...+.. +.|+ ++ ++++++.++.++|| +.++ . ...+.  .+.+.|.+++|+|  .+++++ +.++.. .+|...
T Consensus       262 ~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~-~~~~~--~~~~~v~~~~~s~--~~~~~~-~~~~~~~~l~~~~  330 (347)
T 2gop_A          262 DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-E-IKPIA--KGRHWIMGFDVDE--IVVYLK-ETATRLRELFTWD  330 (347)
T ss_dssp             CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS-S-EEEEE--CSSSEEEEEEESS--SEEEEE-ECSSSCCEEEEES
T ss_pred             CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC-c-eEEEe--cCCCeEEeeeeeC--cEEEEE-cCCCChHHheEeC
Confidence            233775 8999 88 99999999999999 8843 2 23332  3567899999999  666666 444443 777665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=2.6e-18  Score=178.07  Aligned_cols=269  Identities=9%  Similarity=0.016  Sum_probs=169.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCC-----eEEEEEecCCCeEEEEeCC---------CcEEE
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGP-----VSCLTFRQGTSELFSGSFD---------RTVKI  288 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------g~i~i  288 (513)
                      ..++.|+|++.+|+++  ++.|++||+.+++....+.+|...     ...+.|+|||++|+.++.+         +.+.+
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            5579999999988886  899999999999988777776543     2448899999999988875         56779


Q ss_pred             EeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEec--CCC-----------------CeeE
Q 010296          289 WNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRA--PAS-----------------SLEC  349 (513)
Q Consensus       289 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~-----------------~v~~  349 (513)
                      ||+.+++.. .+..+...+...+|+|+|+.++...++.|++|++.++....+..  +..                 ....
T Consensus        97 ~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~  175 (740)
T 4a5s_A           97 YDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (740)
T ss_dssp             EETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             EECCCCcEE-EcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence            999998754 45667788999999999976666678999999998776543322  111                 1234


Q ss_pred             EEeecCCe-EEEEeCC-CCEEEEecCCCC-------eeEEeecCCCcccCCCCcccCcCccccccCCC---CCC-CCCCc
Q 010296          350 CCFISNDE-FLSGSDD-GSIELWSLLRKK-------PVYIVKNAHPLLDGLKNFEQDEGKISNGHSEN---GNL-NPGSY  416 (513)
Q Consensus       350 ~~~~~~~~-~~~~~~d-g~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~-~~~~~  416 (513)
                      +.|+|+|+ |+.++.| +.+.+|++....       ....+......      .......+.++....   +.. ....+
T Consensus       176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G------~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG------AVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT------SCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             eEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc------CcCCeeEEEEEECCCCCCCCcceEEEe
Confidence            88999996 6655544 447777653111       01111100000      000000122222211   100 00001


Q ss_pred             CC----CCCcceEEEEEEecCCCEEEEec----CCCcEEEEEeCCCCc-----ceeeeeecCcccEEE-----EEEeecC
Q 010296          417 HS----SSAYSWVSSVTVCGGSDLAASGA----GNGSVRLWAIESETK-----DIQPLYNLPLVGFVN-----SLAFAKS  478 (513)
Q Consensus       417 ~~----~~~~~~i~~~~~s~~~~~l~~g~----~dg~v~vwd~~~~~~-----~~~~~~~~~~~~~v~-----~v~~sp~  478 (513)
                      ..    ..+...+..++|+|+|++++...    .+..|++||+.++..     ....+....+.+.|.     .++|+||
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence            00    12566799999999999766553    234799999998740     112221122333333     6889999


Q ss_pred             CCEEE-EEecCCC--cccccccCCC
Q 010296          479 GQFLI-AGVGQEP--RLGRWGHLPA  500 (513)
Q Consensus       479 ~~~l~-~~~~~dg--~v~~W~~~~~  500 (513)
                      |+.|+ ..+..+|  .|.+|+...+
T Consensus       330 G~~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          330 GNSFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             SSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             CCEEEEEEEcCCCceEEEEEECCCC
Confidence            99887 6644555  4666665543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.77  E-value=1.4e-14  Score=132.89  Aligned_cols=277  Identities=13%  Similarity=0.056  Sum_probs=193.1

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      .+...+.+|+++++|+++++...++.|.+|+.. +......                  ...+...+.++++++++.+++
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~------------------~~~~~~~~~~i~~~~~g~l~v   72 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYP------------------LPTPDAKVMCLTISSDGEVWF   72 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE------------------CSSTTCCEEEEEECTTSCEEE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec------------------CCcccCceeeEEECCCCCEEE
Confidence            456789999999999987777668999999988 5432211                  012345689999999999888


Q ss_pred             EEeCCCcEEEEeCCCcce-eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE-eecccCCeEEEEeeC
Q 010296          237 SGGLDRHIHLWDTRIQEH-IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST-LFGHQSEVLTIDCLR  314 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~  314 (513)
                      +...++.|..|+.. ++. ...+......+.++++.+++.++++...++.|.+|+. +++.... .......+..+++.+
T Consensus        73 ~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~  150 (299)
T 2z2n_A           73 TENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS  150 (299)
T ss_dssp             EETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred             eCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC
Confidence            77778899999976 332 2222334567899999999987777777889999998 5544332 223445688999999


Q ss_pred             CCeEEEEe-CCCcEEEEecCCCeeeEE--ecCCCCeeEEEeecCCeEEEEe-CCCCEEEEecCCCCeeEEeecCCCcccC
Q 010296          315 KERVLTVG-RDRSMQLWKVPEESRLVF--RAPASSLECCCFISNDEFLSGS-DDGSIELWSLLRKKPVYIVKNAHPLLDG  390 (513)
Q Consensus       315 ~~~~~~~~-~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~  390 (513)
                      ++.++++. ..+.|..|+. ++....+  ......+..+++.+++.+..+. ..+.|.+|+. +++... +...      
T Consensus       151 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~------  221 (299)
T 2z2n_A          151 DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP------  221 (299)
T ss_dssp             TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS------
T ss_pred             CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC------
Confidence            98877665 4688999998 5554433  2334567889999988765554 5788999998 665332 2111      


Q ss_pred             CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEE
Q 010296          391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFV  470 (513)
Q Consensus       391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v  470 (513)
                                                   .....+.+++++++|+++++...++.|.+|+. ++  .+..+....+...+
T Consensus       222 -----------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g--~~~~~~~~~~~~~~  269 (299)
T 2z2n_A          222 -----------------------------TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN--IIEEYPIQIKSAEP  269 (299)
T ss_dssp             -----------------------------STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT--EEEEEECSSSSCCE
T ss_pred             -----------------------------CCCCCceeEEECCCCCEEEeccCCceEEEECC-CC--ceEEEeCCCCCCcc
Confidence                                         11123889999999997777767889999998 33  22322221234568


Q ss_pred             EEEEeecCCCEEEEEecCCCcccccccC
Q 010296          471 NSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       471 ~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .++++ ++|.++++. . .+.|..++..
T Consensus       270 ~~i~~-~~g~l~v~~-~-~~~l~~~~~~  294 (299)
T 2z2n_A          270 HGICF-DGETIWFAM-E-CDKIGKLTLI  294 (299)
T ss_dssp             EEEEE-CSSCEEEEE-T-TTEEEEEEEC
T ss_pred             ceEEe-cCCCEEEEe-c-CCcEEEEEcC
Confidence            99999 888877766 4 4556556544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.76  E-value=6e-16  Score=143.79  Aligned_cols=264  Identities=9%  Similarity=0.006  Sum_probs=186.5

Q ss_pred             CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeec
Q 010296          179 KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF  258 (513)
Q Consensus       179 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  258 (513)
                      .+++|.+||..+++....++....             ..........+.+. .++++++...++.|.+||..+++.+..+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n-------------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i   80 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRAN-------------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI   80 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHH-------------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhc-------------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc
Confidence            379999999999887654311000             01122346777775 3555566666799999999999998888


Q ss_pred             cCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCCCCceeEEeeccc-----CCeEEEEeeCCCeEEEEe--CCCcEEEE
Q 010296          259 PGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAEDRAYISTLFGHQ-----SEVLTIDCLRKERVLTVG--RDRSMQLW  330 (513)
Q Consensus       259 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~--~d~~i~iw  330 (513)
                      . .......+++++++ .|+++. .++.|.+||+.+++....+....     .....+++ .+++++++.  .++.|.+|
T Consensus        81 ~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~vi  157 (328)
T 3dsm_A           81 T-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKI  157 (328)
T ss_dssp             E-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEE
T ss_pred             C-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEE
Confidence            5 45678999999988 455554 78999999999998877665332     14556666 567777665  48899999


Q ss_pred             ecCCCeeeEEecCCCCeeEEEeecCCeEEEEeC-C----------CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcC
Q 010296          331 KVPEESRLVFRAPASSLECCCFISNDEFLSGSD-D----------GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEG  399 (513)
Q Consensus       331 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                      |+.+.+.............+.++++|+++.++. +          +.|.+||..+++....+.....             
T Consensus       158 D~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g-------------  224 (328)
T 3dsm_A          158 DTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG-------------  224 (328)
T ss_dssp             ETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT-------------
T ss_pred             ECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC-------------
Confidence            999887764444445567888999998665443 3          6899999999887766643211             


Q ss_pred             ccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCC
Q 010296          400 KISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSG  479 (513)
Q Consensus       400 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  479 (513)
                                             .....++|+|++++|+++..  .|.+||+.++......+.. ........++++|++
T Consensus       225 -----------------------~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~-~~~~~p~gi~vdp~~  278 (328)
T 3dsm_A          225 -----------------------DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLE-FRDTKYYGLTVNPNN  278 (328)
T ss_dssp             -----------------------CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBC-CCSSCEEEEEECTTT
T ss_pred             -----------------------CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeec-CCCCceEEEEEcCCC
Confidence                                   12789999999999888765  8999999876321111111 013568899999976


Q ss_pred             CEEEEEe----cCCCcccccccC
Q 010296          480 QFLIAGV----GQEPRLGRWGHL  498 (513)
Q Consensus       480 ~~l~~~~----~~dg~v~~W~~~  498 (513)
                      ..|.++.    ..+++|.+|+..
T Consensus       279 g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          279 GEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTT
T ss_pred             CeEEEEcccccccCCEEEEECCC
Confidence            6666665    567899999876

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=1.7e-16  Score=162.74  Aligned_cols=213  Identities=8%  Similarity=-0.024  Sum_probs=143.2

Q ss_pred             chhhhhccCCCeE---------EEEEC--CCCCe-EEEEeC-CceEEEEeCC--C-CccccccCCChhhhccCCCCCCCC
Q 010296          151 EFRVLLKHRQSVT---------AVALS--EDDSK-GFSASK-DGSILHWDVS--S-GKGVKYLWPSEEVLKSHGAKDPQG  214 (513)
Q Consensus       151 ~~~~~~~h~~~V~---------~~~~s--~~~~~-l~t~~~-dg~v~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~  214 (513)
                      ..+.+..|...|.         ...|+  |||++ |+.++. +..|.+|++.  + +.. ..+..       .       
T Consensus        59 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~-------~-------  123 (662)
T 3azo_A           59 AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTP-------V-------  123 (662)
T ss_dssp             CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSC-------C-------
T ss_pred             CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccC-------C-------
Confidence            3455666666655         55555  99998 776553 5667777765  2 332 22200       0       


Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCC------cceeeecc-CcCCCeEEEEEecCCCeE
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLD----------RHIHLWDTRI------QEHIQAFP-GHRGPVSCLTFRQGTSEL  277 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~d----------g~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l  277 (513)
                      ....|...+.+++|+|+|+.|++++.+          ..|++|++.+      +... .+. .+...+..++|+|+|++|
T Consensus       124 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~l  202 (662)
T 3azo_A          124 SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQA  202 (662)
T ss_dssp             CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEE
T ss_pred             ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEE
Confidence            001156778999999999999998876          5899999988      5543 444 556678889999999999


Q ss_pred             EEEeCC--------CcEEEEeCC-CC---ceeEEeecccCCeEEEEeeCCCeEE-EEeCCC--cEEEEecCCCeeeEEec
Q 010296          278 FSGSFD--------RTVKIWNAE-DR---AYISTLFGHQSEVLTIDCLRKERVL-TVGRDR--SMQLWKVPEESRLVFRA  342 (513)
Q Consensus       278 ~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~--~i~iwd~~~~~~~~~~~  342 (513)
                      +.++.+        ..|++||+. ++   +.......+...+..+.|+|+++++ ++..++  .|++|++.++....+..
T Consensus       203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~  282 (662)
T 3azo_A          203 VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR  282 (662)
T ss_dssp             EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred             EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence            977755        379999998 56   4444444457889999999999766 455567  67777765665543333


Q ss_pred             CCCC---------eeEEEeecCCe-EEEEeCCCCEEEE--ecCCCCeeEEe
Q 010296          343 PASS---------LECCCFISNDE-FLSGSDDGSIELW--SLLRKKPVYIV  381 (513)
Q Consensus       343 ~~~~---------v~~~~~~~~~~-~~~~~~dg~i~iw--d~~~~~~~~~~  381 (513)
                      +...         +..++|++++. ++++.. +.++||  |+.+++ +..+
T Consensus       283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l  331 (662)
T 3azo_A          283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA  331 (662)
T ss_dssp             CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC
T ss_pred             ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe
Confidence            2221         45688888887 456667 999999  544444 4444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.74  E-value=6.1e-17  Score=155.08  Aligned_cols=239  Identities=10%  Similarity=-0.051  Sum_probs=160.1

Q ss_pred             cEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296          222 HILALAVSSDGRYLASGGLD---RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      .+..++|+|+|++|+.....   ..|.+|++.+++.......+......+.|+|++++|+.++.++.|++|++.+++...
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            36678999999998877543   478899998887655444333333347899999999999999999999999887655


Q ss_pred             EeecccCCeEE-------------------EEeeCCCeEE-EE-----eCCCcEEEEecCCCeeeEEecCCCCeeEEEee
Q 010296          299 TLFGHQSEVLT-------------------IDCLRKERVL-TV-----GRDRSMQLWKVPEESRLVFRAPASSLECCCFI  353 (513)
Q Consensus       299 ~~~~~~~~v~~-------------------~~~~~~~~~~-~~-----~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~  353 (513)
                      ....+......                   +.|+|++..+ .+     ..+..|++||+.++.......+...+..+.|+
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s  196 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR  196 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence            44433332222                   2455665433 21     35678999999888776555666778899999


Q ss_pred             c-CCe-EEEEeCC------CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296          354 S-NDE-FLSGSDD------GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV  425 (513)
Q Consensus       354 ~-~~~-~~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  425 (513)
                      | ++. ++..+.+      ..|.+|++.+++... +....                                   ....+
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~-----------------------------------~~~~~  240 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHA-----------------------------------EGESC  240 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCC-----------------------------------TTEEE
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccC-----------------------------------CCccc
Confidence            9 665 5544433      468888876554322 11100                                   01237


Q ss_pred             EEEEEecCCCEEEEecCC-----CcEEEEEeCCCCcceeeeeecCcccEEEEEEeec-CCCEEEEEec------------
Q 010296          426 SSVTVCGGSDLAASGAGN-----GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAK-SGQFLIAGVG------------  487 (513)
Q Consensus       426 ~~~~~s~~~~~l~~g~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~------------  487 (513)
                      ..++|+|+|++|+.++.+     +.|++||+.++.  ...+...+  + .. +.|+| +|++|+++.+            
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~--~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE--NEEVMVMP--P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC--EEEEEECC--S-EE-EEEECSSSSEEEEEECCC----------
T ss_pred             cceEECCCCCEEEEEecCCCCccceEEEEECCCCC--eEEeeeCC--C-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence            889999999987776543     449999998762  22233222  2 23 89999 9998887632            


Q ss_pred             ---CCCcccccccCCCcc
Q 010296          488 ---QEPRLGRWGHLPAAR  502 (513)
Q Consensus       488 ---~dg~v~~W~~~~~~~  502 (513)
                         .+..|.+|+...+..
T Consensus       315 ~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          315 NIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             CCCCCCEEEEEETTTTBC
T ss_pred             ccCCCCcEEEEecccCce
Confidence               346899998876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.74  E-value=5.1e-16  Score=159.77  Aligned_cols=244  Identities=11%  Similarity=0.040  Sum_probs=166.5

Q ss_pred             CCcccEEEEEEcCCCCEEEE-----EeCCCcEEEEeCCCcceeeeccCcCCCe--EEEEEecCCCeEEEEeCCCc-----
Q 010296          218 KQSKHILALAVSSDGRYLAS-----GGLDRHIHLWDTRIQEHIQAFPGHRGPV--SCLTFRQGTSELFSGSFDRT-----  285 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~-----  285 (513)
                      +|...+.+++|||||++||.     |+.+..|++||+.+++.+..  .+...+  ..++|+|+|+.|+.++.+..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            56667999999999999984     33456899999999886511  121222  67999999999999988776     


Q ss_pred             --------EEEEeCCCCc----eeEEeecccCCeEEEEeeCCCe-EEEEeCCC----cEEEEecCCCeeeEEecCCCCee
Q 010296          286 --------VKIWNAEDRA----YISTLFGHQSEVLTIDCLRKER-VLTVGRDR----SMQLWKVPEESRLVFRAPASSLE  348 (513)
Q Consensus       286 --------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~----~i~iwd~~~~~~~~~~~~~~~v~  348 (513)
                              |++|++.++.    ++.....+...+..+.|+|+|+ ++.++.++    .|++|+..++....+..+...+.
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  275 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY  275 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence                    9999999876    3333334556788999999985 44555444    67777766555555555555566


Q ss_pred             EEEeecCCeEEEEeC----CCCEEEEecCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296          349 CCCFISNDEFLSGSD----DGSIELWSLLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY  422 (513)
Q Consensus       349 ~~~~~~~~~~~~~~~----dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  422 (513)
                      ...+ +++.++..+.    ++.|.+|++.++..  ...+...+                                   ..
T Consensus       276 ~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-----------------------------------~~  319 (695)
T 2bkl_A          276 EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED-----------------------------------SS  319 (695)
T ss_dssp             EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC-----------------------------------SS
T ss_pred             EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC-----------------------------------CC
Confidence            6666 4444554443    57899999887653  12222111                                   11


Q ss_pred             ceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEe---cCCCcccccccCC
Q 010296          423 SWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGV---GQEPRLGRWGHLP  499 (513)
Q Consensus       423 ~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~---~~dg~v~~W~~~~  499 (513)
                      ..+..++|+ ++.++++...|+..+||.+.........+. .+..+.|..++++|++..|+.+.   ...++|.+|++.+
T Consensus       320 ~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          320 ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ-LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC-CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            237788888 677888999999988887763222233322 23467888999999998777442   2347899999876


Q ss_pred             Cc
Q 010296          500 AA  501 (513)
Q Consensus       500 ~~  501 (513)
                      +.
T Consensus       398 g~  399 (695)
T 2bkl_A          398 GK  399 (695)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.73  E-value=5.3e-15  Score=146.20  Aligned_cols=312  Identities=14%  Similarity=0.070  Sum_probs=207.3

Q ss_pred             CCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010296          169 EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWD  248 (513)
Q Consensus       169 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd  248 (513)
                      |.+.++++...+++|.++|..+++.+..+                    .....+..+.|+|+|++|++++.++.|.+||
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i--------------------~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD  224 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVL--------------------DTGYAVHISRLSASGRYLFVIGRDGKVNMID  224 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEE--------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEE--------------------eCCCCccceEECCCCCEEEEEcCCCeEEEEE
Confidence            44556667788999999999999887755                    1233467899999999999999999999999


Q ss_pred             CC--CcceeeeccCcCCCeEEEEEe----cCCCeEEEEe-CCCcEEEEeCCCCceeEEeecc-----------cCCeEEE
Q 010296          249 TR--IQEHIQAFPGHRGPVSCLTFR----QGTSELFSGS-FDRTVKIWNAEDRAYISTLFGH-----------QSEVLTI  310 (513)
Q Consensus       249 ~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~  310 (513)
                      +.  +++.+..+.... ....++|+    |+|+++++++ .+++|.|+|..+.+.+..+...           ...+..+
T Consensus       225 ~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i  303 (567)
T 1qks_A          225 LWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI  303 (567)
T ss_dssp             TTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred             CCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence            96  788887777533 46789999    6999988665 4699999999999888776421           1256778


Q ss_pred             EeeCCC-eEE-EEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-E-EEEeCCCCEEEEecCCCCeeEEeec-
Q 010296          311 DCLRKE-RVL-TVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-F-LSGSDDGSIELWSLLRKKPVYIVKN-  383 (513)
Q Consensus       311 ~~~~~~-~~~-~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~-~~~~~dg~i~iwd~~~~~~~~~~~~-  383 (513)
                      ..++++ .++ .....|.|.++|.......  ...........+.|+|+++ | ++...++.|.++|+.+++.+..+.. 
T Consensus       304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg  383 (567)
T 1qks_A          304 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG  383 (567)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             EEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc
Confidence            777765 333 5556799999998765432  2233445567889999996 3 3555788999999999998877765 


Q ss_pred             CCCcc--cCCCCcccCcC-----------ccccccCCCCCCCCCCcC---C-CCCcceEEEEEEecCCCEEEEecC----
Q 010296          384 AHPLL--DGLKNFEQDEG-----------KISNGHSENGNLNPGSYH---S-SSAYSWVSSVTVCGGSDLAASGAG----  442 (513)
Q Consensus       384 ~~~~~--~~~~~~~~~~~-----------~i~~~~~~~~~~~~~~~~---~-~~~~~~i~~~~~s~~~~~l~~g~~----  442 (513)
                      .....  .....+.++.+           .+.++...........+.   . ......-..+.++|++++|.+...    
T Consensus       384 g~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~  463 (567)
T 1qks_A          384 GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE  463 (567)
T ss_dssp             SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS
T ss_pred             CcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCC
Confidence            22111  11111222222           222222221110000000   0 000111234668999999888663    


Q ss_pred             ---CCcEEEEEeCCC-----Ccceeeee-----ecC-cccEEEEEEeecCCCEEEEEec----CCCcccccccCCCc
Q 010296          443 ---NGSVRLWAIESE-----TKDIQPLY-----NLP-LVGFVNSLAFAKSGQFLIAGVG----QEPRLGRWGHLPAA  501 (513)
Q Consensus       443 ---dg~v~vwd~~~~-----~~~~~~~~-----~~~-~~~~v~~v~~sp~~~~l~~~~~----~dg~v~~W~~~~~~  501 (513)
                         .++|.|+|+.+.     ...+..+.     .++ ....+..+.|+|+|+++.++..    .++.|.++|..+..
T Consensus       464 ~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~  540 (567)
T 1qks_A          464 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  540 (567)
T ss_dssp             HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             cccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence               359999999876     22222221     111 2457899999999999887743    37899999877654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=1.7e-15  Score=138.90  Aligned_cols=240  Identities=11%  Similarity=0.029  Sum_probs=170.4

Q ss_pred             chhhhhccCCCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          151 EFRVLLKHRQSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      .+..+..+.....+++|+|+++ +++++..++.|.+|+..++  ...+                   ..+...+.+++++
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-------------------~~~~~~~~~l~~~   77 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-------------------MHPSHHQNGHCLN   77 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-------------------ESSCSSEEEEEEC
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-------------------ECCCCCcceeeEC
Confidence            3445556677889999999998 7778888999999999876  3322                   2345668999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccC----cCCCeEEEEEecCCCeEEE----Ee-------------CCCcEEE
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPG----HRGPVSCLTFRQGTSELFS----GS-------------FDRTVKI  288 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~i  288 (513)
                      |+|+++++...++.|.+|+..+++.......    ....+..++++|+|+++++    ++             ..+.|..
T Consensus        78 ~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~  157 (296)
T 3e5z_A           78 KQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFR  157 (296)
T ss_dssp             TTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEE
T ss_pred             CCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEE
Confidence            9999888777778999999988875443322    1235678999999998887    33             1346666


Q ss_pred             EeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecC-CCee----eEEecCCCCeeEEEeecCCeEEEEe
Q 010296          289 WNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVP-EESR----LVFRAPASSLECCCFISNDEFLSGS  362 (513)
Q Consensus       289 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~-~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~  362 (513)
                      ++.. ++ +..+..+...+..++|+|++.++ +.+.++.|++|++. .+..    ..+......+..+++.++|.+.++.
T Consensus       158 ~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          158 LAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             ECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred             ECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence            6665 43 34445566678899999998655 44457899999986 3333    1223344556789999999877766


Q ss_pred             CCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE-ecCCCEEEEec
Q 010296          363 DDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV-CGGSDLAASGA  441 (513)
Q Consensus       363 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~g~  441 (513)
                       ++.|.+|+.. ++.+..+....                                     . +++++| +|+++.|++++
T Consensus       236 -~~~v~~~~~~-g~~~~~~~~~~-------------------------------------~-~~~~~f~~~d~~~L~v~t  275 (296)
T 3e5z_A          236 -GDGVHVLTPD-GDELGRVLTPQ-------------------------------------T-TSNLCFGGPEGRTLYMTV  275 (296)
T ss_dssp             -TTEEEEECTT-SCEEEEEECSS-------------------------------------C-CCEEEEESTTSCEEEEEE
T ss_pred             -CCeEEEECCC-CCEEEEEECCC-------------------------------------C-ceeEEEECCCCCEEEEEc
Confidence             8899999986 66666654221                                     2 778889 58998888888


Q ss_pred             CCCcEEEEEeCCC
Q 010296          442 GNGSVRLWAIESE  454 (513)
Q Consensus       442 ~dg~v~vwd~~~~  454 (513)
                      .++ |.-++..+.
T Consensus       276 ~~~-l~~~~~~~~  287 (296)
T 3e5z_A          276 STE-FWSIETNVR  287 (296)
T ss_dssp             TTE-EEEEECSCC
T ss_pred             CCe-EEEEEcccc
Confidence            763 444444443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=1.8e-15  Score=156.16  Aligned_cols=241  Identities=10%  Similarity=0.018  Sum_probs=169.0

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCc-----eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDG-----SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      +|...+..++|||||++||.+..++     .|++||+.+++.....                    .....+..++|+||
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~--------------------~~~~~~~~~~wspD  181 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV--------------------LERVKFSCMAWTHD  181 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE--------------------EEEECSCCEEECTT
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc--------------------ccCcccceEEEEeC
Confidence            4555789999999999999765433     8999999998765421                    11122567999999


Q ss_pred             CCEEEEEeCCCc----------------EEEEeCCCcce----eeeccCcCCCeEEEEEecCCCeEEEEeC-----CCcE
Q 010296          232 GRYLASGGLDRH----------------IHLWDTRIQEH----IQAFPGHRGPVSCLTFRQGTSELFSGSF-----DRTV  286 (513)
Q Consensus       232 ~~~l~s~~~dg~----------------i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i  286 (513)
                      |+.|+.++.++.                |++|++.++..    +.....|...+..+.|+|+|++|+.++.     +..|
T Consensus       182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l  261 (710)
T 2xdw_A          182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRL  261 (710)
T ss_dssp             SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEE
T ss_pred             CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEE
Confidence            999999887765                99999988762    2233335566889999999999887664     5689


Q ss_pred             EEEeCCC------Cc-eeEEeecccCCeEEEEeeCCC-eEEEEeC----CCcEEEEecCCCee---eEEecCCC--CeeE
Q 010296          287 KIWNAED------RA-YISTLFGHQSEVLTIDCLRKE-RVLTVGR----DRSMQLWKVPEESR---LVFRAPAS--SLEC  349 (513)
Q Consensus       287 ~iwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----d~~i~iwd~~~~~~---~~~~~~~~--~v~~  349 (513)
                      ++||+.+      +. ....+..+...+... |++++ .++..+.    ...|.+|++.+...   ..+..+..  .+..
T Consensus       262 ~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~  340 (710)
T 2xdw_A          262 WYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEW  340 (710)
T ss_dssp             EEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEE
T ss_pred             EEEECcccccccCCccceEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEE
Confidence            9999976      43 355566666665553 66655 5555544    23699999987641   33344433  5777


Q ss_pred             EEeecCCe-EEEEeCCCC--EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEE
Q 010296          350 CCFISNDE-FLSGSDDGS--IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS  426 (513)
Q Consensus       350 ~~~~~~~~-~~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~  426 (513)
                      +.|++++. +++...++.  |.+|++.+++.+..+...                                     ...+.
T Consensus       341 ~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-------------------------------------~~~v~  383 (710)
T 2xdw_A          341 VACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-------------------------------------VGSVV  383 (710)
T ss_dssp             EEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-------------------------------------SSEEE
T ss_pred             EEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-------------------------------------CceEE
Confidence            88887776 556777774  566777677766665422                                     23388


Q ss_pred             EEEEecCCCEEEEe----cCCCcEEEEEeCCCC
Q 010296          427 SVTVCGGSDLAASG----AGNGSVRLWAIESET  455 (513)
Q Consensus       427 ~~~~s~~~~~l~~g----~~dg~v~vwd~~~~~  455 (513)
                      .++++|++..|+..    ...+.|++||+.++.
T Consensus       384 ~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          384 GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            89999998766533    244789999998763

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=5.9e-15  Score=152.28  Aligned_cols=244  Identities=9%  Similarity=0.018  Sum_probs=165.6

Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCc-------
Q 010296          218 KQSKHILALAVSSDGRYLASGGLDR-----HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRT-------  285 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------  285 (513)
                      +|...+..++|||||++||.+..++     .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3555789999999999998776543     8999999999876543222 23678999999999998888766       


Q ss_pred             ---------EEEEeCCCCce----eEEeecccCCeEEEEeeCCCeEE-EEeC-----CCcEEEEecCC------C--eee
Q 010296          286 ---------VKIWNAEDRAY----ISTLFGHQSEVLTIDCLRKERVL-TVGR-----DRSMQLWKVPE------E--SRL  338 (513)
Q Consensus       286 ---------i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~-~~~~-----d~~i~iwd~~~------~--~~~  338 (513)
                               |++|++.+++.    +.....+...+..+.|+|+++.+ .++.     +..|++||+.+      +  ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     99999988763    22222245567899999998644 4432     56899999976      4  334


Q ss_pred             EEecCCCCeeEEEeecCC-eEEEEeC----CCCEEEEecCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCC
Q 010296          339 VFRAPASSLECCCFISND-EFLSGSD----DGSIELWSLLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNL  411 (513)
Q Consensus       339 ~~~~~~~~v~~~~~~~~~-~~~~~~~----dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  411 (513)
                      .+..+...+.. .|+++| .|+..+.    .+.|.+|++.++..  ...+.....                         
T Consensus       281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-------------------------  334 (710)
T 2xdw_A          281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE-------------------------  334 (710)
T ss_dssp             EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-------------------------
T ss_pred             EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC-------------------------
Confidence            45555555544 466666 4554433    33699999887642  223321111                         


Q ss_pred             CCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc--EEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEe---
Q 010296          412 NPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS--VRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGV---  486 (513)
Q Consensus       412 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~---  486 (513)
                                ...+..++|++++.++++...++.  |++|++.++ ..+..+..  +.+.|..++++|++..|+.+.   
T Consensus       335 ----------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g-~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~  401 (710)
T 2xdw_A          335 ----------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG-ALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSF  401 (710)
T ss_dssp             ----------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC-CEEEEECC--CSSEEEEEECCTTCSEEEEEEECS
T ss_pred             ----------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC-CEEEecCC--CCceEEEEecCCCCCEEEEEEeCC
Confidence                      123888999988888888888885  455565455 23333332  367899999999998766432   


Q ss_pred             cCCCcccccccCCCc
Q 010296          487 GQEPRLGRWGHLPAA  501 (513)
Q Consensus       487 ~~dg~v~~W~~~~~~  501 (513)
                      ...++|.+|++.++.
T Consensus       402 ~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          402 LSPGIIYHCDLTKEE  416 (710)
T ss_dssp             SCCCEEEEEETTSSS
T ss_pred             CCCCEEEEEECCCCc
Confidence            245789999987654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=4e-15  Score=136.36  Aligned_cols=225  Identities=9%  Similarity=-0.006  Sum_probs=161.6

Q ss_pred             CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce
Q 010296          218 KQSKHILALAVSSDGR-YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY  296 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  296 (513)
                      .+.....+++|+|+++ +++++..++.|.+|+..++  ...+..+...+.+++++++++++++...++.|.+||..+++.
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence            3455678999999998 7788888999999999877  566666778899999999999877777778999999988775


Q ss_pred             eEEeecc----cCCeEEEEeeCCCeEEEEeC------------------CCcEEEEecCCCeeeEEecCCCCeeEEEeec
Q 010296          297 ISTLFGH----QSEVLTIDCLRKERVLTVGR------------------DRSMQLWKVPEESRLVFRAPASSLECCCFIS  354 (513)
Q Consensus       297 ~~~~~~~----~~~v~~~~~~~~~~~~~~~~------------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~  354 (513)
                      .......    ...+..+++.|+|.++++..                  .+.|..++.. +..............++|+|
T Consensus       103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~  181 (296)
T 3e5z_A          103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLP  181 (296)
T ss_dssp             EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECT
T ss_pred             EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECC
Confidence            4433221    23467899999998876421                  3466666665 44445556666778999999


Q ss_pred             CCe-EEEEeCCCCEEEEecC-CCCe---eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEE
Q 010296          355 NDE-FLSGSDDGSIELWSLL-RKKP---VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVT  429 (513)
Q Consensus       355 ~~~-~~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~  429 (513)
                      ++. +++.+.++.|.+|++. +++.   ...+ ...                                    ...+..++
T Consensus       182 dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~------------------------------------~~~p~~i~  224 (296)
T 3e5z_A          182 SGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVE------------------------------------PGKTDGLR  224 (296)
T ss_dssp             TSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCS------------------------------------SSCCCSEE
T ss_pred             CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCC------------------------------------CCCCCeEE
Confidence            996 5566678899999987 4443   1222 110                                    11256789


Q ss_pred             EecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEe-ecCCCEEEEEecCCC
Q 010296          430 VCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAF-AKSGQFLIAGVGQEP  490 (513)
Q Consensus       430 ~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~-sp~~~~l~~~~~~dg  490 (513)
                      ++++|+++++.  ++.|.+|+.. + ..+..+..  +.. +++++| +|+++.|+++ +.++
T Consensus       225 ~d~~G~l~v~~--~~~v~~~~~~-g-~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~-t~~~  278 (296)
T 3e5z_A          225 VDAGGLIWASA--GDGVHVLTPD-G-DELGRVLT--PQT-TSNLCFGGPEGRTLYMT-VSTE  278 (296)
T ss_dssp             EBTTSCEEEEE--TTEEEEECTT-S-CEEEEEEC--SSC-CCEEEEESTTSCEEEEE-ETTE
T ss_pred             ECCCCCEEEEc--CCeEEEECCC-C-CEEEEEEC--CCC-ceeEEEECCCCCEEEEE-cCCe
Confidence            99999877766  7889999986 3 33333332  334 889999 5899988888 4453

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.72  E-value=4.3e-16  Score=160.28  Aligned_cols=240  Identities=13%  Similarity=0.043  Sum_probs=165.2

Q ss_pred             ccCCCeEEEEECCCCCeEE-----EEeCCceEEEEeCCCCccc-cccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          157 KHRQSVTAVALSEDDSKGF-----SASKDGSILHWDVSSGKGV-KYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~-----t~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      +|...+.+++|||||++||     .|+.+.+|++||+.+++.+ ...                  ....  ....++|+|
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~------------------~~~~--~~~~~~wsp  177 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV------------------IEGG--KYATPKWTP  177 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC------------------BSCC--TTCCCEECT
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc------------------cCcc--cccceEEec
Confidence            5666899999999999999     3344578999999998754 110                  0011  125789999


Q ss_pred             CCCEEEEEeCCCc-------------EEEEeCCCcc----eeeeccCcCCCeEEEEEecCCCeEEEEeCCC----cEEEE
Q 010296          231 DGRYLASGGLDRH-------------IHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGTSELFSGSFDR----TVKIW  289 (513)
Q Consensus       231 ~~~~l~s~~~dg~-------------i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iw  289 (513)
                      +|+.|+.++.+..             |++|++.++.    ++.....|...+.++.|+|+|++|+.++.++    .|++|
T Consensus       178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~  257 (695)
T 2bkl_A          178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWK  257 (695)
T ss_dssp             TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEE
T ss_pred             CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEE
Confidence            9999999988776             9999998876    3444444667889999999999998877666    67888


Q ss_pred             eCCCCceeEEeecccCCeEEEEeeCCCeEEEEeC----CCcEEEEecCCCee---eEEecC--CCCeeEEEeecCCeEEE
Q 010296          290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR----DRSMQLWKVPEESR---LVFRAP--ASSLECCCFISNDEFLS  360 (513)
Q Consensus       290 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~iwd~~~~~~---~~~~~~--~~~v~~~~~~~~~~~~~  360 (513)
                      +..++. ...+..+...+....++.++ ++..+.    ++.|.+|++.++..   ..+..+  ...+..++++.+..+++
T Consensus       258 ~~~~~~-~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~  335 (695)
T 2bkl_A          258 RPGEKD-FRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLE  335 (695)
T ss_dssp             CTTCSS-CEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEE
T ss_pred             cCCCCc-eEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEE
Confidence            766554 34444455566666664444 555443    57899999977642   333333  44577788883334668


Q ss_pred             EeCCCCEEEEecC-CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE
Q 010296          361 GSDDGSIELWSLL-RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS  439 (513)
Q Consensus       361 ~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  439 (513)
                      ...++..+||.+. .++....+...                                    ....+..++++|+++.|+.
T Consensus       336 ~~~dg~~~l~~~~~~g~~~~~l~~~------------------------------------~~~~v~~~~~s~d~~~l~~  379 (695)
T 2bkl_A          336 YLKDATSEVRVATLKGKPVRTVQLP------------------------------------GVGAASNLMGLEDLDDAYY  379 (695)
T ss_dssp             EEETTEEEEEEEETTCCEEEECCCS------------------------------------SSSEECCCBSCTTCSEEEE
T ss_pred             EEECCEEEEEEEeCCCCeeEEecCC------------------------------------CCeEEEEeecCCCCCEEEE
Confidence            8889988888664 34444443211                                    1233777888898877663


Q ss_pred             e----cCCCcEEEEEeCCC
Q 010296          440 G----AGNGSVRLWAIESE  454 (513)
Q Consensus       440 g----~~dg~v~vwd~~~~  454 (513)
                      .    ...+.|++||+.++
T Consensus       380 ~~ss~~~P~~v~~~d~~~g  398 (695)
T 2bkl_A          380 VFTSFTTPRQIYKTSVSTG  398 (695)
T ss_dssp             EEEETTEEEEEEEEETTTC
T ss_pred             EEcCCCCCCEEEEEECCCC
Confidence            3    34578999999876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.71  E-value=5.7e-15  Score=133.30  Aligned_cols=237  Identities=9%  Similarity=-0.006  Sum_probs=166.1

Q ss_pred             CeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          161 SVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      ...+|++++++++++ +.+.++.|.+|+..+......                   ...+...+.+|+++++++++++..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~~   85 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTDF   85 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEET
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEcC
Confidence            778999999999776 446789999999765443211                   012234577899999998666655


Q ss_pred             CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE
Q 010296          240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL  319 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  319 (513)
                       ++.|.+|+................+.+++++++++++++...++.|.+|+..+.............+..+++.+++.++
T Consensus        86 -~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~  164 (270)
T 1rwi_B           86 -NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVY  164 (270)
T ss_dssp             -TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred             -CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEE
Confidence             8899999987654432222233578999999999877777778899999876654433222333467889999988777


Q ss_pred             EEe-CCCcEEEEecCCCeeeEEe-cCCCCeeEEEeecCCeEE-EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCccc
Q 010296          320 TVG-RDRSMQLWKVPEESRLVFR-APASSLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQ  396 (513)
Q Consensus       320 ~~~-~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  396 (513)
                      ++. .++.|.+|+.......... .....+..+++.++|.++ +...++.|.+|+........ ..              
T Consensus       165 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~--------------  229 (270)
T 1rwi_B          165 VTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP--------------  229 (270)
T ss_dssp             EEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC--------------
T ss_pred             EEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec--------------
Confidence            655 4689999998876654332 233668899999998755 44567899999986643322 11              


Q ss_pred             CcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          397 DEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       397 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                            ..+...+.+++++++|+++++...++.|++|++...
T Consensus       230 ----------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          230 ----------------------FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             ----------------------CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             ----------------------cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence                                  011123889999999999899999999999998765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.71  E-value=4.9e-15  Score=137.28  Aligned_cols=282  Identities=11%  Similarity=0.017  Sum_probs=190.0

Q ss_pred             EEECCCCCeEEEEeC-----CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          165 VALSEDDSKGFSASK-----DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       165 ~~~s~~~~~l~t~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      ....|+++.+++...     ++.|.+.|..+++.+..+                   .....+ . ++++|+|++|++++
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I-------------------~vG~~P-~-va~spDG~~lyVan   96 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-------------------DGGFLP-N-PVVADDGSFIAHAS   96 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-------------------EECSSC-E-EEECTTSSCEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEE-------------------ECCCCC-c-EEECCCCCEEEEEc
Confidence            455789988888765     689999999999988765                   111223 4 99999999888775


Q ss_pred             ----------CCCcEEEEeCCCcceeeeccCc-------CCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEEe
Q 010296          240 ----------LDRHIHLWDTRIQEHIQAFPGH-------RGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       240 ----------~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~  300 (513)
                                .++.|.+||..+++.+..+...       ......+.|+|+|++|+++..  ++.|.++|+.+++.+.++
T Consensus        97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI  176 (386)
T 3sjl_D           97 TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML  176 (386)
T ss_dssp             EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             ccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence                      3578999999999988876432       124567999999999998864  689999999999998887


Q ss_pred             ecccCCeEEEEeeC-CCeEEEEeCCCcEEEEecCC-CeeeEEe-cCC----CCee-EEEee-cCCeEEEEeCCCCEEEEe
Q 010296          301 FGHQSEVLTIDCLR-KERVLTVGRDRSMQLWKVPE-ESRLVFR-APA----SSLE-CCCFI-SNDEFLSGSDDGSIELWS  371 (513)
Q Consensus       301 ~~~~~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~-~~~~~~~-~~~----~~v~-~~~~~-~~~~~~~~~~dg~i~iwd  371 (513)
                      ....  . ...+.. ...+++.+.||.+.+.++.. ++..... ...    .++. ...|. ++|+++..+.+|.|++.|
T Consensus       177 ~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d  253 (386)
T 3sjl_D          177 DVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID  253 (386)
T ss_dssp             ECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred             ECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEE
Confidence            5321  1 122222 33677888899999998876 4432111 111    1111 13443 678776677789999999


Q ss_pred             cCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-------
Q 010296          372 LLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-------  442 (513)
Q Consensus       372 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-------  442 (513)
                      +.+...  +..+......            .+..               .........++++++++.|+....       
T Consensus       254 ~~~~~~~v~~~~~~~~~~------------~~~~---------------g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~h  306 (386)
T 3sjl_D          254 LSSGDAKFLPAVEALTEA------------ERAD---------------GWRPGGWQQVAYHRALDRIYLLVDQRDEWRH  306 (386)
T ss_dssp             CTTSSCEECCCEESSCHH------------HHHT---------------TEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred             CCCCcceeecceeccccc------------cccc---------------cccCCCcceeeECCCCCeEEEEecccccccc
Confidence            876643  2222100000            0000               000111445777999988887643       


Q ss_pred             ---CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCC-EEEEEecCCCcccccccCCCc
Q 010296          443 ---NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       443 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~~~~~  501 (513)
                         .+.|.++|+.+.    +.+..++....+.+|+|+||++ +|+++...++.|.++|..++.
T Consensus       307 k~~~~~V~viD~~t~----kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          307 KTASRFVVVLDAKTG----ERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             TSCEEEEEEEETTTC----CEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCCEEEEEECCCC----eEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence               257999999887    3333333456789999999997 778876779999999987664

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.71  E-value=7.2e-15  Score=132.35  Aligned_cols=249  Identities=12%  Similarity=0.019  Sum_probs=175.0

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCc-ccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQS-KHILALAVSSDGRYLASGGLDRHIHLWD  248 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~vwd  248 (513)
                      .+++|++++.++.|.+||..+++.+..+                   ..+. ..+.+++++|+|++|+  +.++.|..||
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~-------------------~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d   62 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEY-------------------PLEKGWECNSVAATKAGEILF--SYSKGAKMIT   62 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEE-------------------ECCTTCCCCEEEECTTSCEEE--ECBSEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEe-------------------CCCccCCCcCeEECCCCCEEE--eCCCCEEEEC
Confidence            3578999999999999999999988765                   1222 3578899999999888  3478899999


Q ss_pred             CCCcceeeeccCcC-CCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCceeEEeec------ccCCeEEEEeeCCCeEE-
Q 010296          249 TRIQEHIQAFPGHR-GPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRAYISTLFG------HQSEVLTIDCLRKERVL-  319 (513)
Q Consensus       249 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~-  319 (513)
                      . +++.+..+..+. ..+.++.+.++|+++++.+. ++.|..++. +++.+..+..      +......+.+.+++.++ 
T Consensus        63 ~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv  140 (276)
T 3no2_A           63 R-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV  140 (276)
T ss_dssp             T-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE
T ss_pred             C-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEE
Confidence            8 899888887643 46889999999999998887 788888886 6777666541      22234556677777655 


Q ss_pred             EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCc
Q 010296          320 TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDE  398 (513)
Q Consensus       320 ~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (513)
                      +...++.|..||.. ++.+........+..+.+.+++. +++++.++.|..+|..+++.+..+......           
T Consensus       141 ~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~-----------  208 (276)
T 3no2_A          141 PLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE-----------  208 (276)
T ss_dssp             EETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB-----------
T ss_pred             EecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC-----------
Confidence            56678999999998 66553333334566677788886 556666778999999999999888632110           


Q ss_pred             CccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC--------CcEEEEEeCCCCcceeeeeecCcccEE
Q 010296          399 GKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN--------GSVRLWAIESETKDIQPLYNLPLVGFV  470 (513)
Q Consensus       399 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~v  470 (513)
                                          ......+..++..++|.++++....        +..+++.+....+.+-.+......+.|
T Consensus       209 --------------------~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~  268 (276)
T 3no2_A          209 --------------------GVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMI  268 (276)
T ss_dssp             --------------------SCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCC
T ss_pred             --------------------CccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccce
Confidence                                0112338889999999988887421        245677774443333333333334444


Q ss_pred             EEE
Q 010296          471 NSL  473 (513)
Q Consensus       471 ~~v  473 (513)
                      .+|
T Consensus       269 ~~~  271 (276)
T 3no2_A          269 STI  271 (276)
T ss_dssp             CEE
T ss_pred             eee
Confidence            444

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=2e-15  Score=140.88  Aligned_cols=235  Identities=12%  Similarity=0.088  Sum_probs=168.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      .|.+++|++++..++..+.++.++.|   .+.....+..+...+.+++|++++++++++..++.|.+||..+++......
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~   83 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV   83 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred             ccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence            36778899988877777778899999   455666677777788999999999977788889999999998887665444


Q ss_pred             cccCCeEEEEeeCCCeEEEEeCC-----CcEEEEecCCCeeeEEe---cCCCCeeEEEeecCCeEEEEeCC-------CC
Q 010296          302 GHQSEVLTIDCLRKERVLTVGRD-----RSMQLWKVPEESRLVFR---APASSLECCCFISNDEFLSGSDD-------GS  366 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~d-------g~  366 (513)
                      .+...+.++++++++.++++...     +.|.+|+..+.....+.   .....+..++++|++.++.++..       +.
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  163 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  163 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence            56678999999999987766644     48999998877654222   23456889999999986655542       45


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE-EEecCCCc
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA-ASGAGNGS  445 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~g~~dg~  445 (513)
                      |..|+..+++........                                      ..+..++|+|++++| ++.+.++.
T Consensus       164 l~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~~~dg~~l~v~~~~~~~  205 (333)
T 2dg1_A          164 VYYVSPDFRTVTPIIQNI--------------------------------------SVANGIALSTDEKVLWVTETTANR  205 (333)
T ss_dssp             EEEECTTSCCEEEEEEEE--------------------------------------SSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             EEEEeCCCCEEEEeecCC--------------------------------------CcccceEECCCCCEEEEEeCCCCe
Confidence            666665554433222110                                      117889999999855 45556789


Q ss_pred             EEEEEeCCCCcceeee-----eecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          446 VRLWAIESETKDIQPL-----YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       446 v~vwd~~~~~~~~~~~-----~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      |++|++......+..+     ........+..++++++|.++++. ..++.|.+|+..
T Consensus       206 i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~-~~~~~v~~~d~~  262 (333)
T 2dg1_A          206 LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM-YGQGRVLVFNKR  262 (333)
T ss_dssp             EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE-ETTTEEEEECTT
T ss_pred             EEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEE-cCCCEEEEECCC
Confidence            9999997432222211     111112468889999999977766 667899999873

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.70  E-value=9.4e-14  Score=130.66  Aligned_cols=280  Identities=10%  Similarity=-0.047  Sum_probs=182.1

Q ss_pred             EECCCCCeEEEEeC--Cc---eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe-
Q 010296          166 ALSEDDSKGFSASK--DG---SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG-  239 (513)
Q Consensus       166 ~~s~~~~~l~t~~~--dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-  239 (513)
                      ...|++++++++..  ..   +|.+||..+++.+..+                   .....+  .++|+|+|++|+++. 
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i-------------------~~g~~p--~i~~spDg~~lyv~n~   85 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-------------------NGGFLP--NPVAAHSGSEFALAST   85 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEe-------------------cCCCCC--CeEECCCCCEEEEEec
Confidence            44577887777653  22   8899999998876554                   111222  899999999999886 


Q ss_pred             ---------CCCcEEEEeCCCcceeeeccCc-------CCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEE-e
Q 010296          240 ---------LDRHIHLWDTRIQEHIQAFPGH-------RGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYIST-L  300 (513)
Q Consensus       240 ---------~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~  300 (513)
                               .++.|.+||..+.+.+..+...       ......+.|+|+|++|+++..  ++.|.++| .+++.+.. +
T Consensus        86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i  164 (373)
T 2mad_H           86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL  164 (373)
T ss_pred             cccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc
Confidence                     3678999999988887765432       123458999999999998874  57899999 99988777 5


Q ss_pred             ecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeEEe------cCCCCe-eEEEeecCC-eEEEEeCCCCEEEE
Q 010296          301 FGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFR------APASSL-ECCCFISND-EFLSGSDDGSIELW  370 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~------~~~~~v-~~~~~~~~~-~~~~~~~dg~i~iw  370 (513)
                      .. ..   ++.+.|.+  .+++.+.||.+.+++. ++......      ....++ ....+.+++ .++..+..+.+.+.
T Consensus       165 ~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vi  239 (373)
T 2mad_H          165 SS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQA  239 (373)
T ss_pred             CC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEE
Confidence            42 22   23444443  5667778999999999 66554211      111111 223344443 44444477899999


Q ss_pred             ecCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC------
Q 010296          371 SLLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG------  442 (513)
Q Consensus       371 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~------  442 (513)
                      |+.+...  +..+.......                       ..    ..........++++|+++.|+++..      
T Consensus       240 d~~~~~~~v~~~~~~~~~~~-----------------------~~----~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~  292 (373)
T 2mad_H          240 DISAAGATNKAPIDALSGGR-----------------------KA----DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK  292 (373)
T ss_pred             eccCCcceEeeeeeecCCcc-----------------------cc----cceecCceEeEEECCCCCEEEEEeccCCccc
Confidence            9876532  22221100000                       00    0001112455789999988887643      


Q ss_pred             ----CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCC-EEEEEecCCCcccccccCCCccc
Q 010296          443 ----NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       443 ----dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                          .+.|.++|+.+. +.+.   .++......+++|+|||+ +|+++...++.|.+||..+....
T Consensus       293 ~~~~~~~V~VID~~t~-~vv~---~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          293 LHAAAKEVTSVTGLVG-QTSS---QISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             ccCCCCeEEEEECCCC-EEEE---EEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence                357999999887 3333   333445689999999999 67776446899999998776543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.69  E-value=3.4e-13  Score=123.58  Aligned_cols=274  Identities=13%  Similarity=0.037  Sum_probs=189.0

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      ....+.+|++.++|+++++...++.|.+|+.. +......                  ...+...+.++++.+++.++++
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~------------------~~~~~~~~~~i~~~~~g~l~v~   78 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFE------------------VPTPDAKVMCLIVSSLGDIWFT   78 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE------------------CSSTTCCEEEEEECTTSCEEEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEE------------------CCCCCCcceeEEECCCCCEEEE
Confidence            45678999999999988877778999999987 4433211                  1122356899999999988777


Q ss_pred             EeCCCcEEEEeCCCccee-eeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE-eecccCCeEEEEeeCC
Q 010296          238 GGLDRHIHLWDTRIQEHI-QAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST-LFGHQSEVLTIDCLRK  315 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~  315 (513)
                      ...++.|.+||.. ++.. ..+......+.++++.+++.++++...++.|..|+.. ++.... +......+..+++.++
T Consensus        79 ~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           79 ENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD  156 (300)
T ss_dssp             ETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred             ecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC
Confidence            7667889999987 5543 2233344678999999999877777778899999987 554422 2323457889999998


Q ss_pred             CeEEEEeC-CCcEEEEecCCCeeeEEe--cCCCCeeEEEeecCCeEEEEe-CCCCEEEEecCCCCeeEEeecCCCcccCC
Q 010296          316 ERVLTVGR-DRSMQLWKVPEESRLVFR--APASSLECCCFISNDEFLSGS-DDGSIELWSLLRKKPVYIVKNAHPLLDGL  391 (513)
Q Consensus       316 ~~~~~~~~-d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  391 (513)
                      +.++.+.. .+.|..|+. .+....+.  .....+..+++.+++.+..+. ..+.|.+|+. +++.......        
T Consensus       157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~--------  226 (300)
T 2qc5_A          157 NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP--------  226 (300)
T ss_dssp             SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS--------
T ss_pred             CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC--------
Confidence            88776654 678999998 44443332  234567889999988766554 4567999997 4443332110        


Q ss_pred             CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEE
Q 010296          392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVN  471 (513)
Q Consensus       392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~  471 (513)
                                                  .....+.+++++++|+++++...++.|..|+.. +  .+..+........+.
T Consensus       227 ----------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g--~~~~~~~~~~~~~~~  275 (300)
T 2qc5_A          227 ----------------------------TPNARPHAITAGKNSEIWFTEWGANQIGRITND-N--TIQEYQLQTENAEPH  275 (300)
T ss_dssp             ----------------------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S--CEEEEECCSTTCCCC
T ss_pred             ----------------------------CCCCCceEEEECCCCCEEEeccCCCeEEEECCC-C--cEEEEECCccCCccc
Confidence                                        011228899999999977777777899999983 3  222222111345578


Q ss_pred             EEEeecCCCEEEEEecCCCcccccc
Q 010296          472 SLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       472 ~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      +++++++|.++++. . . .|..++
T Consensus       276 ~i~~~~~g~l~v~~-~-~-~i~~~~  297 (300)
T 2qc5_A          276 GITFGKDGSVWFAL-K-C-KIGKLN  297 (300)
T ss_dssp             CEEECTTSCEEEEC-S-S-EEEEEE
T ss_pred             eeEeCCCCCEEEEc-c-C-ceEEeC
Confidence            89999999866655 3 3 554444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.69  E-value=5.8e-15  Score=138.61  Aligned_cols=221  Identities=15%  Similarity=0.180  Sum_probs=150.4

Q ss_pred             CCeEEEEECCCCCeEEEEeCC---c--eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296          160 QSVTAVALSEDDSKGFSASKD---G--SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY  234 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  234 (513)
                      ..+.+++|+|||++|+.++.+   +  .|.+|++.+++.....                    .+.. +..++|+|+|+.
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~--------------------~~~~-~~~~~wspdg~~  117 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL--------------------EAKN-IRSLEWNEDSRK  117 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE--------------------EESE-EEEEEECTTSSE
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE--------------------cCCC-ccceeECCCCCE
Confidence            568899999999999977653   3  4888888877654321                    2233 899999999999


Q ss_pred             EEEEeCC---------------------------CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC---
Q 010296          235 LASGGLD---------------------------RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR---  284 (513)
Q Consensus       235 l~s~~~d---------------------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---  284 (513)
                      |+.++.+                           ..|++|++.+++.+..+.. . .+..+.|+|++ +++++..++   
T Consensus       118 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~  194 (347)
T 2gop_A          118 LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIP  194 (347)
T ss_dssp             EEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSC
T ss_pred             EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccc
Confidence            8887632                           5799999998877455554 3 78899999999 777776542   


Q ss_pred             ----cEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-EEEEeCC--------CcEEEEecCCCeeeEEe-cCCCCeeE-
Q 010296          285 ----TVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-VLTVGRD--------RSMQLWKVPEESRLVFR-APASSLEC-  349 (513)
Q Consensus       285 ----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d--------~~i~iwd~~~~~~~~~~-~~~~~v~~-  349 (513)
                          ...||.+.+++ ...+..+ ..+..+  +|+|. ++.++.+        ..|.+|+  ++....+. .+...+.. 
T Consensus       195 ~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~  268 (347)
T 2gop_A          195 QYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQA  268 (347)
T ss_dssp             CSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEE
T ss_pred             cccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCc
Confidence                33444443444 3344434 555544  88884 5555533        4688888  44443333 33456765 


Q ss_pred             EEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEE
Q 010296          350 CCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVT  429 (513)
Q Consensus       350 ~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~  429 (513)
                      +.|+ ++.+++++.++.++|| +.+++....+..                                      ...|.+++
T Consensus       269 ~~~s-dg~~~~~~~~~~~~l~-~~~g~~~~~~~~--------------------------------------~~~v~~~~  308 (347)
T 2gop_A          269 KIKD-GKVYFTLFEEGSVNLY-IWDGEIKPIAKG--------------------------------------RHWIMGFD  308 (347)
T ss_dssp             EEET-TEEEEEEEETTEEEEE-EESSSEEEEECS--------------------------------------SSEEEEEE
T ss_pred             cEEc-CcEEEEEecCCcEEEE-EcCCceEEEecC--------------------------------------CCeEEeee
Confidence            8888 7766688889999999 876554333221                                      23389999


Q ss_pred             EecCCCEEEEecCCCcE-EEEEeC
Q 010296          430 VCGGSDLAASGAGNGSV-RLWAIE  452 (513)
Q Consensus       430 ~s~~~~~l~~g~~dg~v-~vwd~~  452 (513)
                      |+|  .++++++.++.. .||.+.
T Consensus       309 ~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          309 VDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             ESS--SEEEEEECSSSCCEEEEES
T ss_pred             eeC--cEEEEEcCCCChHHheEeC
Confidence            999  677777777665 788776

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.68  E-value=1.5e-14  Score=130.60  Aligned_cols=238  Identities=10%  Similarity=0.006  Sum_probs=163.1

Q ss_pred             cEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296          222 HILALAVSSDGRYLA-SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      ...++++++++++++ +...++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+|+..+.......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            688999999999777 446788999999766543332223445678999999988655555 889999998765443222


Q ss_pred             ecccCCeEEEEeeCCCeEEEEe-CCCcEEEEecCCCeeeEEe-cCCCCeeEEEeecCCeEE-EEeCCCCEEEEecCCCCe
Q 010296          301 FGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFR-APASSLECCCFISNDEFL-SGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~dg~i~iwd~~~~~~  377 (513)
                      ......+..+++.+++.++++. .++.|.+|+..+....... .....+..+++.+++.++ +...++.|.+|+......
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            2233568899999988777654 5788999976554433222 223467789999988755 445678999999876653


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcc
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKD  457 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~  457 (513)
                      .....                                     .....+..++++++|.++++...++.|.+|+...... 
T Consensus       184 ~~~~~-------------------------------------~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~-  225 (270)
T 1rwi_B          184 VVLPF-------------------------------------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-  225 (270)
T ss_dssp             EECCC-------------------------------------SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC-
T ss_pred             Eeecc-------------------------------------cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc-
Confidence            32111                                     0012288999999998888888888999999866421 


Q ss_pred             eeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          458 IQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       458 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                       .. ....+...+.+++++|+|+++++. ..+++|++++.....
T Consensus       226 -~~-~~~~~~~~p~~i~~~~~g~l~v~~-~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          226 -TV-LPFTGLNTPLAVAVDSDRTVYVAD-RGNDRVVKLTSLEHH  266 (270)
T ss_dssp             -EE-CCCCSCSCEEEEEECTTCCEEEEE-GGGTEEEEECCCGGG
T ss_pred             -ee-eccCCCCCceeEEECCCCCEEEEE-CCCCEEEEEcCCCcc
Confidence             11 111233568999999999866665 788999999876543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=8.1e-14  Score=129.37  Aligned_cols=232  Identities=9%  Similarity=-0.001  Sum_probs=163.1

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      .....+.+. +++++++...++.|.+||..+++.+..+                    ........++++++++++++..
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--------------------~~~~~p~~i~~~~~g~lyv~~~  102 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--------------------TGFTSPRYIHFLSDEKAYVTQI  102 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--------------------ECCSSEEEEEEEETTEEEEEEB
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--------------------CCCCCCcEEEEeCCCeEEEEEC
Confidence            346778774 3445556666799999999999887654                    1234588999999985555554


Q ss_pred             CCCcEEEEeCCCcceeeeccCcC-----CCeEEEEEecCCCeEEEEe--CCCcEEEEeCCCCceeEEeecccCCeEEEEe
Q 010296          240 LDRHIHLWDTRIQEHIQAFPGHR-----GPVSCLTFRQGTSELFSGS--FDRTVKIWNAEDRAYISTLFGHQSEVLTIDC  312 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  312 (513)
                      .++.|.+||+.+++....+....     .....|++ . +..|+++.  .++.|.+||+.+++.+..+.. ......+.+
T Consensus       103 ~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~  179 (328)
T 3dsm_A          103 WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVM  179 (328)
T ss_dssp             SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEE
T ss_pred             CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEE
Confidence            78999999999998877665332     14456777 3 45555554  488999999999988877754 344578889


Q ss_pred             eCCCeEEEEeCC-----------CcEEEEecCCCeeeEE-ecC-CCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCee
Q 010296          313 LRKERVLTVGRD-----------RSMQLWKVPEESRLVF-RAP-ASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPV  378 (513)
Q Consensus       313 ~~~~~~~~~~~d-----------~~i~iwd~~~~~~~~~-~~~-~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~  378 (513)
                      .+++++++++..           +.|.+||..+.+.... ..+ ......++++|++. ++++..  .|.+||..+++..
T Consensus       180 ~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~  257 (328)
T 3dsm_A          180 DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP  257 (328)
T ss_dssp             CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred             cCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence            999988766653           6899999988876532 222 34688999999775 444433  8999999887643


Q ss_pred             EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEe----cCCCcEEEEEeC
Q 010296          379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASG----AGNGSVRLWAIE  452 (513)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g----~~dg~v~vwd~~  452 (513)
                      .....                                   .........++++| ++.++++.    ..++.|.+|+..
T Consensus       258 ~~~~~-----------------------------------~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          258 VRPFL-----------------------------------EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             SSCSB-----------------------------------CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             eeeee-----------------------------------cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            10000                                   00012388999999 56666666    578899999987

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.65  E-value=2e-14  Score=133.14  Aligned_cols=275  Identities=9%  Similarity=0.019  Sum_probs=179.9

Q ss_pred             CCCcccchhhhhccCCCeEEEEECCCCCeEEEEe----------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCC
Q 010296          145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSAS----------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQG  214 (513)
Q Consensus       145 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (513)
                      +....+.+..+..-..+  .++++|+|++|++++          .++.|.+||..+.+.+..+.-..      +      
T Consensus        65 D~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~------g------  130 (386)
T 3sjl_D           65 DGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD------A------  130 (386)
T ss_dssp             ETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT------C------
T ss_pred             ECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCC------c------
Confidence            33444445555544444  499999999998775          36789999999998877551000      0      


Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGL--DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE  292 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  292 (513)
                      ...........++|+|+|++|+++..  ++.|.++|+.+++.+.++....  + ...+....+.+++.+.||.+.+.++.
T Consensus       131 ~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~  207 (386)
T 3sjl_D          131 PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFG  207 (386)
T ss_dssp             CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             cccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECC
Confidence            00000123456899999999998874  6899999999999998885322  1 23333345667788889999999987


Q ss_pred             C-CceeEEeecc----cCCeE-EEEee-CCCeEEEEeCCCcEEEEecCCCeeeE---Ee--c--------CCCCeeEEEe
Q 010296          293 D-RAYISTLFGH----QSEVL-TIDCL-RKERVLTVGRDRSMQLWKVPEESRLV---FR--A--------PASSLECCCF  352 (513)
Q Consensus       293 ~-~~~~~~~~~~----~~~v~-~~~~~-~~~~~~~~~~d~~i~iwd~~~~~~~~---~~--~--------~~~~v~~~~~  352 (513)
                      + ++.......+    ..++. ...|. ++++++..+.++.|++.|+.+.....   ..  .        .......+++
T Consensus       208 ~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~  287 (386)
T 3sjl_D          208 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY  287 (386)
T ss_dssp             SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred             CCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeE
Confidence            6 5543221111    12221 23453 67888778889999999997654321   11  0        1123345677


Q ss_pred             ecCCe-EEEEeC----------CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCC
Q 010296          353 ISNDE-FLSGSD----------DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSA  421 (513)
Q Consensus       353 ~~~~~-~~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  421 (513)
                      ++++. +++...          .+.|.++|+.+++.+..+.....                                   
T Consensus       288 ~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~-----------------------------------  332 (386)
T 3sjl_D          288 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-----------------------------------  332 (386)
T ss_dssp             ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-----------------------------------
T ss_pred             CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCC-----------------------------------
Confidence            87764 333221          25799999999999999875432                                   


Q ss_pred             cceEEEEEEecCCC-EEEEe-cCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296          422 YSWVSSVTVCGGSD-LAASG-AGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS  478 (513)
Q Consensus       422 ~~~i~~~~~s~~~~-~l~~g-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~  478 (513)
                         +..|+++++++ +|+++ ..++.|.++|..++ +.+..+.   ..+..+.+.+++|
T Consensus       333 ---~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~---~~~~p~~l~~s~d  384 (386)
T 3sjl_D          333 ---IDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVN---QLGHGPQVITTAD  384 (386)
T ss_dssp             ---ECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEEC---CCCSSCCEEEECC
T ss_pred             ---cceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEec---CCCCCceeEECCc
Confidence               88999999997 66665 45899999999987 3344333   3444555677766

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.63  E-value=5.2e-14  Score=145.81  Aligned_cols=242  Identities=14%  Similarity=0.047  Sum_probs=158.3

Q ss_pred             CcccEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCc--------
Q 010296          219 QSKHILALAVSSDGRYLASGGLD-----RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRT--------  285 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------  285 (513)
                      |...+..++|||||++||.++.+     ..|++||+.+++.+... .+...+..++|+|+ +.|+.++.++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44578899999999999887643     46999999999876431 12222357899999 98888876654        


Q ss_pred             ------EEEEeCCCCce--eEEee--cccCCeEEEEeeCCCeE-EEEeC-----CCcEEEEecCCC--e-eeEEecCCCC
Q 010296          286 ------VKIWNAEDRAY--ISTLF--GHQSEVLTIDCLRKERV-LTVGR-----DRSMQLWKVPEE--S-RLVFRAPASS  346 (513)
Q Consensus       286 ------i~iwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~-~~~~~-----d~~i~iwd~~~~--~-~~~~~~~~~~  346 (513)
                            |++|++.++..  ...+.  .+...+..+.|+|+|+. +..+.     ...|++||+.++  . ...+..+...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  89999987652  22222  23335889999999954 44443     348999999876  4 4445445444


Q ss_pred             eeEEEeecCC-eEEEEeC----CCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCC
Q 010296          347 LECCCFISND-EFLSGSD----DGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSS  420 (513)
Q Consensus       347 v~~~~~~~~~-~~~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  420 (513)
                      .....+ |++ .|+..+.    ++.|.+|++.++. ....+...+                                   
T Consensus       319 ~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-----------------------------------  362 (741)
T 1yr2_A          319 QWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-----------------------------------  362 (741)
T ss_dssp             CEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-----------------------------------
T ss_pred             eEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-----------------------------------
Confidence            544444 555 5665554    3459999987752 223332111                                   


Q ss_pred             CcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEe---cCCCccccccc
Q 010296          421 AYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGV---GQEPRLGRWGH  497 (513)
Q Consensus       421 ~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~---~~dg~v~~W~~  497 (513)
                       ...+..++++ ++.++++...++..+||.+.........+. .+..+.|..++++|+++.|+.+.   ...++|.+|++
T Consensus       363 -~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          363 -KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS-LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             -SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB-CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             -CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence             1226677887 567888888999888887763223333332 23467899999999988665332   34478999998


Q ss_pred             CCCc
Q 010296          498 LPAA  501 (513)
Q Consensus       498 ~~~~  501 (513)
                      .++.
T Consensus       440 ~tg~  443 (741)
T 1yr2_A          440 ATAK  443 (741)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            6653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=1.9e-13  Score=123.06  Aligned_cols=212  Identities=13%  Similarity=0.071  Sum_probs=158.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccCcC-CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeeccc-CCeE
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR-GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQ-SEVL  308 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~  308 (513)
                      .+++|++++.++.|.+||..+++.+..+..+. ..+.++.++|+|++|+  +.++.|..||. +++.+..+..+. ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            36789999999999999999999999998766 4789999999999888  45788999999 899988887643 4678


Q ss_pred             EEEeeCCCeEEEE-eC-CCcEEEEecCCCeeeEEec------CCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeE
Q 010296          309 TIDCLRKERVLTV-GR-DRSMQLWKVPEESRLVFRA------PASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVY  379 (513)
Q Consensus       309 ~~~~~~~~~~~~~-~~-d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~  379 (513)
                      ++.+.+++.++.+ +. .+.|..++........+..      +......+.+.++|. +++...++.|.+||.. ++.+.
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w  159 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN  159 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence            8889999876644 44 6778777764333223221      112344556778876 5677789999999988 99888


Q ss_pred             EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCccee
Q 010296          380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQ  459 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~  459 (513)
                      .+....                                      .+.++.+.++|+++++++.++.|..+|..++. .+-
T Consensus       160 ~~~~~~--------------------------------------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~-~~w  200 (276)
T 3no2_A          160 SVKLSG--------------------------------------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNR-IVR  200 (276)
T ss_dssp             EEECSS--------------------------------------CCCEEEECTTSCEEEECBTTSEEEEECTTTCC-EEE
T ss_pred             EEECCC--------------------------------------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCc-EEE
Confidence            876421                                      14567788999999999988899999988773 322


Q ss_pred             eeeec--C--cccEEEEEEeecCCCEEEEE
Q 010296          460 PLYNL--P--LVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       460 ~~~~~--~--~~~~v~~v~~sp~~~~l~~~  485 (513)
                      .+...  +  ....+..++..++|.++++.
T Consensus       201 ~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          201 RVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EecCCCCCCccccccccceEcCCCCEEEEe
Confidence            23211  1  12347889999999988877

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.63  E-value=5.1e-14  Score=145.90  Aligned_cols=241  Identities=13%  Similarity=0.030  Sum_probs=158.9

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCC-----ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKD-----GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      +|...+..++|||||++||.++.+     .+|++||+.+++.+...                    .+...+..++|+|+
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--------------------~~~~~~~~~~wspD  219 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--------------------LKWVKFSGLAWLGN  219 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--------------------EEEEESCCCEESTT
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--------------------CCCceeccEEEECC
Confidence            344578899999999999976543     46999999998764311                    11112357899999


Q ss_pred             CCEEEEEeCCCc--------------EEEEeCCCcc----eeeeccCcCCCeEEEEEecCCCeEEEEeCCC-----cEEE
Q 010296          232 GRYLASGGLDRH--------------IHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGTSELFSGSFDR-----TVKI  288 (513)
Q Consensus       232 ~~~l~s~~~dg~--------------i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i  288 (513)
                       +.|+.++.++.              |++|++.++.    .+.....+...+..+.|+|+|++|+..+.++     .|++
T Consensus       220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~  298 (741)
T 1yr2_A          220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHV  298 (741)
T ss_dssp             -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEE
T ss_pred             -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEE
Confidence             98888876654              8999997765    2323333444688999999999988776543     8999


Q ss_pred             EeCCCC--ceeEEeecccCCeEEEEeeCCCeEEEEeC----CCcEEEEecCCC--eeeE-EecCCCCeeEEEeecCCeEE
Q 010296          289 WNAEDR--AYISTLFGHQSEVLTIDCLRKERVLTVGR----DRSMQLWKVPEE--SRLV-FRAPASSLECCCFISNDEFL  359 (513)
Q Consensus       289 wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~iwd~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~  359 (513)
                      ||+.++  .+...+..+...+....+..++.++..+.    .+.|.+|++.+.  .... +..+...+..+.+..+..++
T Consensus       299 ~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~  378 (741)
T 1yr2_A          299 ARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFA  378 (741)
T ss_dssp             EEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEE
T ss_pred             EECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEE
Confidence            999876  41445555555555554433446666654    345999998874  3333 33333445567777433466


Q ss_pred             EEeCCCCEEEEecC-CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE
Q 010296          360 SGSDDGSIELWSLL-RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA  438 (513)
Q Consensus       360 ~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  438 (513)
                      +...++..+||.+. +++....+...                                    ....+..++++|+++.|+
T Consensus       379 ~~~~dg~~~l~~~~~~g~~~~~l~~~------------------------------------~~~~v~~~~~s~d~~~l~  422 (741)
T 1yr2_A          379 SYIHDAKSQVLAFDLDGKPAGAVSLP------------------------------------GIGSASGLSGRPGDRHAY  422 (741)
T ss_dssp             EEEETTEEEEEEEETTSCEEEECBCS------------------------------------SSCEEEEEECCBTCSCEE
T ss_pred             EEEECCEEEEEEEeCCCCceeeccCC------------------------------------CCeEEEEeecCCCCCEEE
Confidence            88888887777654 34444444311                                    123388899999987665


Q ss_pred             Ee----cCCCcEEEEEeCCC
Q 010296          439 SG----AGNGSVRLWAIESE  454 (513)
Q Consensus       439 ~g----~~dg~v~vwd~~~~  454 (513)
                      ..    ...++|++||+.++
T Consensus       423 ~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          423 LSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             EEEEETTEEEEEEEEETTTT
T ss_pred             EEEcCCCCCCEEEEEECCCC
Confidence            32    34578999999876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.63  E-value=2.7e-13  Score=125.16  Aligned_cols=238  Identities=6%  Similarity=0.024  Sum_probs=162.1

Q ss_pred             cEEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCcceeeecc----CcCCCeEEEEEecC-CCeEEEEeCCCcEEEE
Q 010296          222 HILALAVSSDGRYLAS-------GGLDRHIHLWDTRIQEHIQAFP----GHRGPVSCLTFRQG-TSELFSGSFDRTVKIW  289 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw  289 (513)
                      ...+++|++++.++++       +..++.|.+|+..+++......    ++...+.+++++++ ++ |+.++..+.|.+|
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~   97 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEE
Confidence            4678999999988777       5668899999988777543222    25567899999999 65 4444445579999


Q ss_pred             eCCCCceeEE-eec----ccCCeEEEEeeCCCeEEEEeCC----------------CcEEEEecCCCeeeEEecCCCCee
Q 010296          290 NAEDRAYIST-LFG----HQSEVLTIDCLRKERVLTVGRD----------------RSMQLWKVPEESRLVFRAPASSLE  348 (513)
Q Consensus       290 d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~v~  348 (513)
                      +.. ++.... ...    ....+.++++.+++.++.+...                +.|..|+.. +.............
T Consensus        98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~  175 (314)
T 1pjx_A           98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPN  175 (314)
T ss_dssp             ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEE
T ss_pred             eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcc
Confidence            998 665432 211    1235789999999987766543                567777765 44433333334567


Q ss_pred             EEEee----cCCe-EE-EEeCCCCEEEEecC-CCCeeE--EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCC
Q 010296          349 CCCFI----SNDE-FL-SGSDDGSIELWSLL-RKKPVY--IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSS  419 (513)
Q Consensus       349 ~~~~~----~~~~-~~-~~~~dg~i~iwd~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  419 (513)
                      .++++    +++. ++ +...++.|.+|++. +++...  .+...                                  .
T Consensus       176 ~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~----------------------------------~  221 (314)
T 1pjx_A          176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI----------------------------------P  221 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC----------------------------------C
T ss_pred             eEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC----------------------------------C
Confidence            88999    9884 44 44567899999976 343211  11100                                  1


Q ss_pred             CCc-ceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          420 SAY-SWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       420 ~~~-~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .+. ..+..++++++|+++++...++.|.+|+..++ ..+..+..  +...+.+++|+|+|++|+++...++.|..|+..
T Consensus       222 ~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g-~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG-QPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB-SCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC-cEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            111 23788999999998888878889999998755 22233322  346789999999999777775777899999875


Q ss_pred             C
Q 010296          499 P  499 (513)
Q Consensus       499 ~  499 (513)
                      .
T Consensus       299 ~  299 (314)
T 1pjx_A          299 R  299 (314)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.62  E-value=1.3e-13  Score=130.11  Aligned_cols=278  Identities=11%  Similarity=0.048  Sum_probs=182.6

Q ss_pred             CCCCeEEEEeC-C----ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe----
Q 010296          169 EDDSKGFSASK-D----GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG----  239 (513)
Q Consensus       169 ~~~~~l~t~~~-d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----  239 (513)
                      |+++++++... +    +.|.++|..+++.+..+                   ..-..+  .++++|++++|+++.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I-------------------~vG~~P--gia~SpDgk~lyVan~~~~  140 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMT-------------------DGGFLP--HPVAAEDGSFFAQASTVFE  140 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-------------------EECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEE-------------------ECCCCC--ceEECCCCCEEEEEecccc
Confidence            46666665544 2    79999999999988765                   111223  799999999888876    


Q ss_pred             ------CCCcEEEEeCCCcceeeeccCc-------CCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEEeeccc
Q 010296          240 ------LDRHIHLWDTRIQEHIQAFPGH-------RGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYISTLFGHQ  304 (513)
Q Consensus       240 ------~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~  304 (513)
                            .++.|.++|..+++.+..+.-.       ......+.|+|++++|+++..  ++.|.++|+.+++.+..+....
T Consensus       141 ~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g  220 (426)
T 3c75_H          141 RIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD  220 (426)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             ccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC
Confidence                  3678999999999988776421       234567899999999998874  5789999999999888776321


Q ss_pred             CCeEEEEeeC--CCeEEEEeCCCcEEEEecCCCeeeEEe-----cCCCC-eeEEEeecCCe-EEEEeCCCCEEEEecCCC
Q 010296          305 SEVLTIDCLR--KERVLTVGRDRSMQLWKVPEESRLVFR-----APASS-LECCCFISNDE-FLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       305 ~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~-v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~  375 (513)
                        .  ....|  ...+++.+.||.+.+.++.+++.....     ....+ ...+.+.+++. ++..+..+.|.+.|+...
T Consensus       221 --~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          221 --C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             --E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred             --c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence              1  22233  235667777888888887544433211     11111 12345577663 555567889999998765


Q ss_pred             CeeE--EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC----------C
Q 010296          376 KPVY--IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG----------N  443 (513)
Q Consensus       376 ~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~----------d  443 (513)
                      ....  .+......            .+..               .........++++|+++.+++...          .
T Consensus       297 ~~~v~~~~~~~~~~------------~i~~---------------g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s  349 (426)
T 3c75_H          297 GATFRAPIEALTEA------------ERAD---------------DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAAS  349 (426)
T ss_dssp             CEEECCCEESSCTT------------TGGG---------------TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCE
T ss_pred             ceEEeeeeeecccc------------cccc---------------ccccCCceeeEEcCCCCEEEEEecccccccccCCC
Confidence            4321  11100000            0000               000011224689999887777642          3


Q ss_pred             CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCC-EEEEEecCCCcccccccCCCcc
Q 010296          444 GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       444 g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      +.|.++|+.+. +   .+..++......+++|+|||+ +|+++...++.|.++|..+...
T Consensus       350 ~~VsVID~~T~-k---vv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          350 RFVVVLNAETG-E---RINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             EEEEEEETTTC-C---EEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             CEEEEEECCCC-e---EEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence            57999999887 3   333333445689999999999 8888855799999999877653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.61  E-value=3.8e-12  Score=116.48  Aligned_cols=234  Identities=10%  Similarity=0.023  Sum_probs=166.2

Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceee-eccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee
Q 010296          219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQ-AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI  297 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  297 (513)
                      +...+.++++.++|+++++...++.|.+|+.. +.... .+..+...+.++++.+++.++++...++.|..|+.. ++. 
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-   89 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-   89 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-
Confidence            34569999999999987776667899999988 55432 223345679999999999887777778899999986 332 


Q ss_pred             EEee--cccCCeEEEEeeCCCeEEEEe-CCCcEEEEecCCCeeeEEe--cCCCCeeEEEeecCCeEEEE-eCCCCEEEEe
Q 010296          298 STLF--GHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFR--APASSLECCCFISNDEFLSG-SDDGSIELWS  371 (513)
Q Consensus       298 ~~~~--~~~~~v~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~-~~dg~i~iwd  371 (513)
                      ..+.  .....+..+++.+++.++++. .++.|.+|+. ++....+.  .....+..+++.+++.+..+ ...+.|.+|+
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  168 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT  168 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence            2222  244578899999988877655 5788999998 44443332  23456889999999876554 4568899999


Q ss_pred             cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      . +++.... ...                                   .....+..++++++|.++++...++.|.+|+.
T Consensus       169 ~-~g~~~~~-~~~-----------------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          169 E-SGDITEF-KIP-----------------------------------TPASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             T-TCCEEEE-ECS-----------------------------------STTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             C-CCcEEEe-eCC-----------------------------------CCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            8 6654432 110                                   01122789999999998887777889999998


Q ss_pred             CCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          452 ESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                       ++.  +..+........+.+++++++|.++++. ..++.|.+|+.
T Consensus       212 -~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~-~~~~~i~~~d~  253 (299)
T 2z2n_A          212 -SGE--ITEFKIPTPNARPHAITAGAGIDLWFTE-WGANKIGRLTS  253 (299)
T ss_dssp             -TCC--EEEEECSSTTCCEEEEEECSTTCEEEEE-TTTTEEEEEET
T ss_pred             -CCc--EEEEECCCCCCCceeEEECCCCCEEEec-cCCceEEEECC
Confidence             542  2222221234668899999999866655 56788999986

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=1.5e-12  Score=120.15  Aligned_cols=242  Identities=8%  Similarity=0.049  Sum_probs=164.1

Q ss_pred             ccCCCeEEEEECCCCCeEEE-------EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          157 KHRQSVTAVALSEDDSKGFS-------ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t-------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ..-....+++|++++.++++       +..++.|.+|+..+++......+               ...++...+.+++++
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------------~~~~~~~~~~~i~~~   79 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCD   79 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEEC
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec---------------ccCCCCCCCceEEEe
Confidence            34456789999999988877       57789999999887765332100               001244568999999


Q ss_pred             CC-CCEEEEEeCCCcEEEEeCCCcceeee-ccC----cCCCeEEEEEecCCCeEEEEeCC---------------CcEEE
Q 010296          230 SD-GRYLASGGLDRHIHLWDTRIQEHIQA-FPG----HRGPVSCLTFRQGTSELFSGSFD---------------RTVKI  288 (513)
Q Consensus       230 ~~-~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~i  288 (513)
                      ++ ++++++.. .+.|.+|+.. ++.... ...    ....+.+++++++++++++...+               +.|..
T Consensus        80 ~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           80 RDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             SSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             cCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence            99 66555444 4579999988 665433 221    22458899999999877776554               56788


Q ss_pred             EeCCCCceeEEeecccCCeEEEEee----CCCe-EEEE-eCCCcEEEEecC-CCeee------EEecCC-CCeeEEEeec
Q 010296          289 WNAEDRAYISTLFGHQSEVLTIDCL----RKER-VLTV-GRDRSMQLWKVP-EESRL------VFRAPA-SSLECCCFIS  354 (513)
Q Consensus       289 wd~~~~~~~~~~~~~~~~v~~~~~~----~~~~-~~~~-~~d~~i~iwd~~-~~~~~------~~~~~~-~~v~~~~~~~  354 (513)
                      |+.. ++... +..+......++++    +++. ++++ ..++.|.+|++. .+...      .+..+. ..+..+++.+
T Consensus       158 ~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~  235 (314)
T 1pjx_A          158 FTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE  235 (314)
T ss_dssp             ECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred             ECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence            8775 54433 33344556889999    9884 5544 457899999986 33321      111222 4577899999


Q ss_pred             CCeEEE-EeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC
Q 010296          355 NDEFLS-GSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG  433 (513)
Q Consensus       355 ~~~~~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  433 (513)
                      +|.+.+ ...++.|.+|+..+++.+..+....                                     ..+.+++|+|+
T Consensus       236 ~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-------------------------------------~~~~~i~~~~d  278 (314)
T 1pjx_A          236 DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF-------------------------------------EKPSNLHFKPQ  278 (314)
T ss_dssp             TCCEEEEEETTTEEEEECTTCBSCSEEEECSS-------------------------------------SCEEEEEECTT
T ss_pred             CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC-------------------------------------CCceeEEECCC
Confidence            998554 4568899999988777665553211                                     22899999999


Q ss_pred             CCEE-EEecCCCcEEEEEeCCC
Q 010296          434 SDLA-ASGAGNGSVRLWAIESE  454 (513)
Q Consensus       434 ~~~l-~~g~~dg~v~vwd~~~~  454 (513)
                      +++| ++...++.|..|++...
T Consensus       279 g~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          279 TKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             SSEEEEEETTTTEEEEEECSSC
T ss_pred             CCEEEEEeCCCCeEEEEeCCCC
Confidence            9944 55556788999998754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.58  E-value=1.7e-12  Score=123.89  Aligned_cols=248  Identities=10%  Similarity=0.132  Sum_probs=166.3

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC--cEEEEeCCCCcee
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR--TVKIWNAEDRAYI  297 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~  297 (513)
                      -.....|+|+++++++++...++.|++||+.++........... .. ++|+++++.|+++..++  .|.+|+...+...
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            34688999999999888877789999999988776655544333 33 99999999999888766  7999998766544


Q ss_pred             EEe----ecccCCeEEEEeeC-CCeEEEEeCCCcEEEEecCCCeeeEE----ecCCCCe--e-EEEeec-CCe-EEEEeC
Q 010296          298 STL----FGHQSEVLTIDCLR-KERVLTVGRDRSMQLWKVPEESRLVF----RAPASSL--E-CCCFIS-NDE-FLSGSD  363 (513)
Q Consensus       298 ~~~----~~~~~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~~----~~~~~~v--~-~~~~~~-~~~-~~~~~~  363 (513)
                      ..+    ......+.+++++| ++.++++..++.|+.|+..+.....+    .......  . .++|+| ++. +++-..
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            333    22445678899999 68888877788999999987765443    1111111  2 899999 466 446667


Q ss_pred             CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-C
Q 010296          364 DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-G  442 (513)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~  442 (513)
                      .+.|+.|+....  +..+...... ..   +. + +.                ...........++++|+|+++++-+ .
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~-~g---~~-d-g~----------------~~~~~~~~P~gia~d~dG~lyvad~~~  343 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQ-KT---VQ-D-GL----------------REEALFAQPNGMTVDEDGNFYIVDGFK  343 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTC-CS---CB-C-EE----------------GGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred             CCEEEEEecCCC--EEEEEeCCCC-CC---cC-C-Cc----------------ccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence            888999987644  2222211100 00   00 0 00                0001122378999999999888888 8


Q ss_pred             CCcEEEEEeCCCCcceeeeeecC-------------cccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          443 NGSVRLWAIESETKDIQPLYNLP-------------LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       443 dg~v~vwd~~~~~~~~~~~~~~~-------------~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      ++.|+.|++.++  .+..+...+             .......|+++|+|.++++- ...++|+.+.
T Consensus       344 ~~~I~~~~~~~G--~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad-~~n~~Ir~i~  407 (409)
T 3hrp_A          344 GYCLRKLDILDG--YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE-AWGKAIRKYA  407 (409)
T ss_dssp             TCEEEEEETTTT--EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE-STTCEEEEEE
T ss_pred             CCEEEEEECCCC--EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE-CCCCeEEEEE
Confidence            899999997766  233332210             12458899999997666665 6777777664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.57  E-value=8.5e-12  Score=117.33  Aligned_cols=251  Identities=8%  Similarity=-0.009  Sum_probs=165.2

Q ss_pred             CCcccchhhhhccCCCeEEEEECCCCCeEEEEe----------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCC
Q 010296          146 PEATDEFRVLLKHRQSVTAVALSEDDSKGFSAS----------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGR  215 (513)
Q Consensus       146 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (513)
                      ....+.+..+..-..+  .++|+|||++|+++.          .++.|.+||..+.+.+..+.-..       ..    .
T Consensus        54 ~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~-------~~----~  120 (373)
T 2mad_H           54 AGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD-------AP----R  120 (373)
T ss_pred             CCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC-------cc----c
Confidence            3334444444433334  999999999999886          36789999999887766541100       00    0


Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcceeee-ccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeC
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGL--DRHIHLWDTRIQEHIQA-FPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNA  291 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~  291 (513)
                       ..+......++|+|+|++|++++.  ++.|.++| .+++.+.. +... .   ++.+.|.++ .+++.+.||.+.+++.
T Consensus       121 -~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          121 -FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             -cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC
Confidence             001123458999999999998874  47899999 99998877 6532 2   245556553 4567778999999999


Q ss_pred             CCCceeEEee-----cccCCe-EEEEeeCC-CeEEEEeCCCcEEEEecCCCeeeE---Eec----------CCCCeeEEE
Q 010296          292 EDRAYISTLF-----GHQSEV-LTIDCLRK-ERVLTVGRDRSMQLWKVPEESRLV---FRA----------PASSLECCC  351 (513)
Q Consensus       292 ~~~~~~~~~~-----~~~~~v-~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~---~~~----------~~~~v~~~~  351 (513)
                       +++.+....     ....++ ....+.++ +.++..+..+.+.+.|+.......   +..          .......+.
T Consensus       195 -~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~  273 (373)
T 2mad_H          195 -AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA  273 (373)
T ss_pred             -CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence             877663322     111121 22334443 455555577899999986543221   100          112234467


Q ss_pred             eecCCe-EEEEeC----------CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCC
Q 010296          352 FISNDE-FLSGSD----------DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSS  420 (513)
Q Consensus       352 ~~~~~~-~~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  420 (513)
                      +++++. +++...          .+.|.++|+.+++.+..+.....                                  
T Consensus       274 ~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~----------------------------------  319 (373)
T 2mad_H          274 YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD----------------------------------  319 (373)
T ss_pred             ECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCC----------------------------------
Confidence            888874 433322          35799999999999888864332                                  


Q ss_pred             CcceEEEEEEecCCC-EEEEec-CCCcEEEEEeCCC
Q 010296          421 AYSWVSSVTVCGGSD-LAASGA-GNGSVRLWAIESE  454 (513)
Q Consensus       421 ~~~~i~~~~~s~~~~-~l~~g~-~dg~v~vwd~~~~  454 (513)
                          ...++|+|+|+ +|+++. .++.|.+||+.+.
T Consensus       320 ----p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          320 ----VDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             ----cCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence                78999999999 788877 5899999999987

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.57  E-value=2.7e-12  Score=122.46  Aligned_cols=248  Identities=10%  Similarity=0.030  Sum_probs=166.7

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      -.....|+|+|+++++++...++.|++||..++......                   .. ..... ++|+|+++.|+++
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-------------------~~-~~~~~-ia~~~~g~~l~~~  188 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-------------------PG-FKGGK-PAVTKDKQRVYSI  188 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-------------------ET-CCBCB-CEECTTSSEEEEE
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-------------------cc-CCCCc-eeEecCCCcEEEE
Confidence            346889999999997778777899999999877654422                   01 11233 8999999999988


Q ss_pred             eCCC--cEEEEeCCCcceeeec----cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE----eecccCCe-
Q 010296          239 GLDR--HIHLWDTRIQEHIQAF----PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST----LFGHQSEV-  307 (513)
Q Consensus       239 ~~dg--~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v-  307 (513)
                      ..++  .|.+|+...+.....+    ......+.+++++|++..|+.+..++.|+.||+.++.....    ..+..... 
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P  268 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNP  268 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSS
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCc
Confidence            8766  7999987766543333    22456678999999666666677788999999987754322    22222222 


Q ss_pred             E-EEEeeC-CCeEEEEe-CCCcEEEEecCCCeeeEEecC---------------CCCeeEEEeecCCeEE-EEe-CCCCE
Q 010296          308 L-TIDCLR-KERVLTVG-RDRSMQLWKVPEESRLVFRAP---------------ASSLECCCFISNDEFL-SGS-DDGSI  367 (513)
Q Consensus       308 ~-~~~~~~-~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~-~~~-~dg~i  367 (513)
                      . .++|+| ++.++++. ..+.|+.|+..... ..+...               ......++++++|.|+ +-. .++.|
T Consensus       269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I  347 (409)
T 3hrp_A          269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCL  347 (409)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEE
T ss_pred             cccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEE
Confidence            3 899999 57776554 57889999977552 222222               2347789999999754 555 68899


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR  447 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~  447 (513)
                      +.|++.++............  .   +            ..+.      ...........|+++++|.++++-..++.|+
T Consensus       348 ~~~~~~~G~v~~~~g~~~~~--g---~------------~~g~------~~~~~~~~P~giavd~~g~lyVad~~n~~Ir  404 (409)
T 3hrp_A          348 RKLDILDGYVSTVAGQVDVA--S---Q------------IDGT------PLEATFNYPYDICYDGEGGYWIAEAWGKAIR  404 (409)
T ss_dssp             EEEETTTTEEEEEEECTTCB--S---C------------CCBS------TTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred             EEEECCCCEEEEEeCCCCCC--C---c------------CCCC------hhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence            99998777643332211000  0   0            0000      0011223489999999998888888889998


Q ss_pred             EEEe
Q 010296          448 LWAI  451 (513)
Q Consensus       448 vwd~  451 (513)
                      .+.+
T Consensus       405 ~i~~  408 (409)
T 3hrp_A          405 KYAV  408 (409)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8876

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.56  E-value=5e-13  Score=124.43  Aligned_cols=236  Identities=9%  Similarity=0.063  Sum_probs=160.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-----------eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEe
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQE-----------HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN  290 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  290 (513)
                      +++.+++++...+|++|+.++ +.+|++....           ..... .+.. |+.|+|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            588999999999999999875 6679865443           11122 2555 999999  88999988 889999999


Q ss_pred             CCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEE
Q 010296          291 AEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELW  370 (513)
Q Consensus       291 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iw  370 (513)
                      +.+.........+...+.++.+.+.. ++++..+|.|.+|++..+....   +...|.|++|+|.| ++.|..||++++|
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG-~~vg~~dg~i~~~  187 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ-LAVLLKDRSFQSF  187 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE-EEEEETTSCEEEE
T ss_pred             chhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc-eEEEEcCCcEEEE
Confidence            98877666677778888888877653 8889999999999999776543   34589999999999 7889999999999


Q ss_pred             ecCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC------
Q 010296          371 SLLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG------  442 (513)
Q Consensus       371 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~------  442 (513)
                      +...+..  ..++.......                            ....+...|.+|+|.+++.+|++=+.      
T Consensus       188 ~~~~~~~~~k~~I~~Pp~~~----------------------------~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~  239 (388)
T 1xip_A          188 AWRNGEMEKQFEFSLPSELE----------------------------ELPVEEYSPLSVTILSPQDFLAVFGNVISETD  239 (388)
T ss_dssp             EEETTEEEEEEEECCCHHHH----------------------------TSCTTTSEEEEEEESSSSEEEEEEECCCCSSC
T ss_pred             cCCCccccccceecCCcccc----------------------------cccCCCeeEEEEEEecCCeEEEEEcCCCCCcC
Confidence            8877765  44553211000                            00123455999999999988886321      


Q ss_pred             -----CCcEEEEEeCCCCcceeee-------ee---cCcccEEEEEEeecCCC-EEEEEecCCCcccccc
Q 010296          443 -----NGSVRLWAIESETKDIQPL-------YN---LPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWG  496 (513)
Q Consensus       443 -----dg~v~vwd~~~~~~~~~~~-------~~---~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~  496 (513)
                           +-.++|.....+...++.+       ..   .++.....=-.|.|+.+ +++++++..--|.+++
T Consensus       240 ~~~~~~~~~~ii~~~~~~~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~  309 (388)
T 1xip_A          240 DEVSYDQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWD  309 (388)
T ss_dssp             SSCCCCEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEEC
T ss_pred             cccCCcceEEEEEcCCCCceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEec
Confidence                 1146666632221111111       00   11112233346777665 4445555556677774

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=1.8e-12  Score=128.14  Aligned_cols=230  Identities=10%  Similarity=0.004  Sum_probs=161.9

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC--CCceeEEeecccCCe
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE--DRAYISTLFGHQSEV  307 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v  307 (513)
                      |.+.++++...++.|.++|..+++.+..+.. ...+..+.|+|+++++++++.++.|.+||+.  +++.+..+.. ....
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence            4455677777889999999999999988874 3467799999999999999999999999996  7777777764 3346


Q ss_pred             EEEEee----CCCeEE-EEe-CCCcEEEEecCCCeeeEEecC------------CCCeeEEEeecCCe--EEEEeCCCCE
Q 010296          308 LTIDCL----RKERVL-TVG-RDRSMQLWKVPEESRLVFRAP------------ASSLECCCFISNDE--FLSGSDDGSI  367 (513)
Q Consensus       308 ~~~~~~----~~~~~~-~~~-~d~~i~iwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~--~~~~~~dg~i  367 (513)
                      ..++|+    |+++++ +++ ..++|.++|..+.+.+.....            ...+..+.+++++.  ++.....|.|
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v  322 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  322 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence            789999    688544 444 579999999988776632211            22566777777753  4466678999


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCcE
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGSV  446 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v  446 (513)
                      .++|....+.+.......                                    ......+.|+|+|++|++++ .++.|
T Consensus       323 ~~vd~~~~~~~~v~~i~~------------------------------------~~~~~d~~~~pdgr~~~va~~~sn~V  366 (567)
T 1qks_A          323 LLVDYTDLNNLKTTEISA------------------------------------ERFLHDGGLDGSHRYFITAANARNKL  366 (567)
T ss_dssp             EEEETTCSSEEEEEEEEC------------------------------------CSSEEEEEECTTSCEEEEEEGGGTEE
T ss_pred             EEEecCCCccceeeeeec------------------------------------cccccCceECCCCCEEEEEeCCCCeE
Confidence            999988765433322111                                    01267889999999887665 57899


Q ss_pred             EEEEeCCCCcceeeee---ecCcccEEEEEEeecCCCEE-EEEecCCCcccccccCC
Q 010296          447 RLWAIESETKDIQPLY---NLPLVGFVNSLAFAKSGQFL-IAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~---~~~~~~~v~~v~~sp~~~~l-~~~~~~dg~v~~W~~~~  499 (513)
                      .++|+.++ +....+.   ..+|.+.-..+ ++|++..+ +++...++.|.+++..+
T Consensus       367 ~ViD~~t~-kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          367 VVIDTKEG-KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEETTTT-EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             EEEECCCC-cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            99999987 3333332   23443311112 68885544 44433568999998876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.55  E-value=5.7e-12  Score=115.16  Aligned_cols=226  Identities=10%  Similarity=0.001  Sum_probs=150.9

Q ss_pred             cEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296          222 HILALAVSSD-GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL  300 (513)
Q Consensus       222 ~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  300 (513)
                      -.-+..|+|+ +.++++....+.|+.|+..++... .+. ....+.+++++++++++++ . ++.|.+||..+++.....
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence            3567899995 456666667899999999877652 332 4567999999999995544 4 568999999887654332


Q ss_pred             ec----ccCCeEEEEeeCCCeEEEEeC------------CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-E-EEEe
Q 010296          301 FG----HQSEVLTIDCLRKERVLTVGR------------DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-F-LSGS  362 (513)
Q Consensus       301 ~~----~~~~v~~~~~~~~~~~~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~  362 (513)
                      ..    ....++.+.+.|+++++++..            .+.|+.++.. +..............++|+|++. + ++.+
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~  168 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDS  168 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEG
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecC
Confidence            21    123478899999998876652            1344444443 23333333334567899999985 3 4666


Q ss_pred             CCCCEEEEec--CCCCeeE--EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE
Q 010296          363 DDGSIELWSL--LRKKPVY--IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA  438 (513)
Q Consensus       363 ~dg~i~iwd~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  438 (513)
                      ..+.|.+|++  .++....  .+...                                  ......+..+++.++|++.+
T Consensus       169 ~~~~i~~~~~d~~~G~~~~~~~~~~~----------------------------------~~~~~~p~g~~~d~~G~lwv  214 (297)
T 3g4e_A          169 LSYSVDAFDYDLQTGQISNRRSVYKL----------------------------------EKEEQIPDGMCIDAEGKLWV  214 (297)
T ss_dssp             GGTEEEEEEECTTTCCEEEEEEEEEC----------------------------------CGGGCEEEEEEEBTTSCEEE
T ss_pred             CCCcEEEEeccCCCCcccCcEEEEEC----------------------------------CCCCCCCCeeEECCCCCEEE
Confidence            7889999987  4554321  11100                                  11112378899999998888


Q ss_pred             EecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEee-cCCCEEEEEecCC
Q 010296          439 SGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFA-KSGQFLIAGVGQE  489 (513)
Q Consensus       439 ~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~~~~~d  489 (513)
                      +....+.|.+|+..++ +.+..+..  +...+++++|. |+++.|++++..+
T Consensus       215 a~~~~~~v~~~d~~tG-~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          215 ACYNGGRVIRLDPVTG-KRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEETTTEEEEECTTTC-CEEEEEEC--SSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEcCCCEEEEEcCCCc-eEEEEEEC--CCCCceEEEEeCCCCCEEEEEcCCc
Confidence            8777888999998876 33333332  34578999999 8998887775544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.54  E-value=2.3e-12  Score=120.39  Aligned_cols=279  Identities=10%  Similarity=0.046  Sum_probs=172.7

Q ss_pred             CCeEEEEECCCCCeEEEEe--CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          160 QSVTAVALSEDDSKGFSAS--KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      ..+..|+++|+|+++++..  .++.++||.+.++... .+ +...           .....|...+..++++++++++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~-p~~~-----------~~~~~~~~~p~gv~~d~~g~L~v~   83 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PF-PPQS-----------GNAIITFDTVLGIKSDGNGIVWML   83 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ES-CCCC-----------SSCCCCCSCEEEEEECSSSEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cC-CCcc-----------cCcccceeEeeEEEEcCCCcEEEE
Confidence            6889999999999988864  2343556655444322 11 1100           012346678999999999886665


Q ss_pred             EeC-----CCcEEEEeCCCcceeeeccC------cCCCeEEEEEecCCCeEE-EEe---CCCcEEEEeCCCCceeEEeec
Q 010296          238 GGL-----DRHIHLWDTRIQEHIQAFPG------HRGPVSCLTFRQGTSELF-SGS---FDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       238 ~~~-----dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~-~~~---~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      -..     .+.|.+||+.+++.+..+..      +...+..+++++++..++ +-.   .++.|.+||+.+++....+.+
T Consensus        84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~  163 (343)
T 2qe8_A           84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG  163 (343)
T ss_dssp             ECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred             cCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence            543     57899999999987665542      224568999998655554 444   578999999998887666654


Q ss_pred             ccCCeE-EEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCC-CEEEEecC---CC
Q 010296          303 HQSEVL-TIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDG-SIELWSLL---RK  375 (513)
Q Consensus       303 ~~~~v~-~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg-~i~iwd~~---~~  375 (513)
                      |..... ...+..++..+ +...++.+..|.             ..+..++++|++. |+++...+ .|..++..   .+
T Consensus       164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             CTTTSCCSCCCEETTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred             CCcccccccceeECCEEEEeccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence            322110 13344456443 566777776553             2356799999985 55555554 44444321   11


Q ss_pred             CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC
Q 010296          376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET  455 (513)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~  455 (513)
                      .. ..                  ..+..           .+....+......++++++|.++++...++.|.+|+..++ 
T Consensus       231 ~~-~~------------------~~~~~-----------~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G-  279 (343)
T 2qe8_A          231 QL-TD------------------AELGS-----------KIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR-  279 (343)
T ss_dssp             TC-CH------------------HHHHT-----------TCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT-
T ss_pred             CC-Ch------------------hhhhc-----------ceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC-
Confidence            00 00                  00000           0000000112567899999999999999999999998444 


Q ss_pred             cceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          456 KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       456 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      . +..+...+....+.+++|.++|.+++++ +..+++.+|..
T Consensus       280 ~-~~~~~~~~~~~~p~~va~~~~g~l~v~~-~~~~~~~~f~~  319 (343)
T 2qe8_A          280 A-YKLLVTDEKLSWTDSFNFGSDGYLYFDC-NQLHHSAPLNA  319 (343)
T ss_dssp             E-EEEEEECGGGSCEEEEEECTTSCEEEEE-CCGGGSGGGBT
T ss_pred             C-EEEEEECCceecCCeeEECCCCcEEEEe-Ccccccccccc
Confidence            2 3333333335568999999999888877 55567766653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.53  E-value=6.1e-11  Score=108.43  Aligned_cols=234  Identities=10%  Similarity=0.015  Sum_probs=165.1

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceee-eccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQ-AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      ...+.+|++.++|+++++...++.|.+|+.. ++... .+..+...+.++++.+++.++++...++.|..||.. ++...
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~   96 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE   96 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence            4568899999999988877778999999987 55433 233344678999999999877777668899999987 55432


Q ss_pred             -EeecccCCeEEEEeeCCCeEEEEeC-CCcEEEEecCCCeeeEEe--cCCCCeeEEEeecCCeEEEEe-CCCCEEEEecC
Q 010296          299 -TLFGHQSEVLTIDCLRKERVLTVGR-DRSMQLWKVPEESRLVFR--APASSLECCCFISNDEFLSGS-DDGSIELWSLL  373 (513)
Q Consensus       299 -~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~-~dg~i~iwd~~  373 (513)
                       .+......+..+++.+++.++.+.. ++.|..|+.. +....+.  .....+..+++.+++.+..+. .++.|.+|+. 
T Consensus        97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-  174 (300)
T 2qc5_A           97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-  174 (300)
T ss_dssp             EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred             ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-
Confidence             2222345688999999888776655 7889999987 4444332  234568889999988765544 4778999998 


Q ss_pred             CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296          374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES  453 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~  453 (513)
                      +++... +...                                   .....+..+++.++|.++++....+.|.+|+. +
T Consensus       175 ~g~~~~-~~~~-----------------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~  217 (300)
T 2qc5_A          175 TGKLEE-YPLP-----------------------------------TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-T  217 (300)
T ss_dssp             TCCEEE-EECS-----------------------------------STTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred             CCcEEE-eeCC-----------------------------------CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-C
Confidence            555433 2210                                   11123889999999988887777788999998 3


Q ss_pred             CCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          454 ETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      + . +...........+.+++++++|.+.++. ..++.|.+|+.
T Consensus       218 g-~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~-~~~~~i~~~~~  258 (300)
T 2qc5_A          218 G-E-ISEYDIPTPNARPHAITAGKNSEIWFTE-WGANQIGRITN  258 (300)
T ss_dssp             C-C-EEEEECSSTTCCEEEEEECSTTCEEEEE-TTTTEEEEECT
T ss_pred             C-c-EEEEECCCCCCCceEEEECCCCCEEEec-cCCCeEEEECC
Confidence            3 1 2222111234568899999999866655 66788988886

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.53  E-value=3.2e-13  Score=125.69  Aligned_cols=179  Identities=12%  Similarity=0.085  Sum_probs=134.6

Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL  240 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  240 (513)
                      +++.+++++...+|++|+.++ +++|++........-        ......+. ....+.. |+.|+|  ++++|+++ .
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~--------~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~  104 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS--------DSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-T  104 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS--------SSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-E
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcc--------ccccccce-EEeeCCC-eeEEEE--CCCEEEEE-c
Confidence            799999999999999999985 555987644311000        00000010 1123556 999999  89999999 7


Q ss_pred             CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEE
Q 010296          241 DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLT  320 (513)
Q Consensus       241 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  320 (513)
                      ++.|++||+.+......+..|...+.++.+.+.  .+++++.||.|.+||+.++....    +...|.|++|+|+| ++.
T Consensus       105 ~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~v  177 (388)
T 1xip_A          105 RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAV  177 (388)
T ss_dssp             SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEE
T ss_pred             CCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEE
Confidence            899999999877766666677788888877654  38899999999999999877643    45689999999999 778


Q ss_pred             EeCCCcEEEEecCCCee--e-EE------e---cCCCCeeEEEeecCCeEEE
Q 010296          321 VGRDRSMQLWKVPEESR--L-VF------R---APASSLECCCFISNDEFLS  360 (513)
Q Consensus       321 ~~~d~~i~iwd~~~~~~--~-~~------~---~~~~~v~~~~~~~~~~~~~  360 (513)
                      +..||++++|+......  . .+      .   .+...|.++.|.+++.|++
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv  229 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA  229 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence            99999999999887763  2 33      1   2568899999999987553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.52  E-value=3.4e-12  Score=117.16  Aligned_cols=229  Identities=12%  Similarity=0.062  Sum_probs=156.2

Q ss_pred             hhhhhccCCCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          152 FRVLLKHRQSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       152 ~~~~~~h~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      +..+..+.....+..|+|+++ ++++...++.|..|+.. +.. ..+                   ..+...+..+++++
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~-------------------~~~~~~~~gl~~d~   95 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVL-------------------LDATAFTNGNAVDA   95 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEE-------------------EESCSCEEEEEECT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEE-------------------eCCCCccceeeECC
Confidence            334445556678899999998 55677788999999984 432 211                   22345688999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeecc---C-cCCCeEEEEEecCCCeEEE----EeC-------------CCcEEEE
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFP---G-HRGPVSCLTFRQGTSELFS----GSF-------------DRTVKIW  289 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~iw  289 (513)
                      +|+++++...++.|.+|+.. ++......   + ....++.+++.++|+++++    |..             .+.|+.|
T Consensus        96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence            99977666666889999976 54322211   1 1234678999999998876    332             2568888


Q ss_pred             eCCCCceeEEeecccCCeEEEEeeCCCe-EEEEeCC------CcEEEEecCCCeee----EEecCCCCeeEEEeecCCeE
Q 010296          290 NAEDRAYISTLFGHQSEVLTIDCLRKER-VLTVGRD------RSMQLWKVPEESRL----VFRAPASSLECCCFISNDEF  358 (513)
Q Consensus       290 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d------~~i~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~  358 (513)
                      +..+++.....  .......++|+|++. ++++...      +.|.+|++......    ...........+++.++|.+
T Consensus       175 d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l  252 (305)
T 3dr2_A          175 PPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL  252 (305)
T ss_dssp             CSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred             cCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence            88776654433  445678899999986 5565554      68999998754311    11222344567889999987


Q ss_pred             EEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE
Q 010296          359 LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA  438 (513)
Q Consensus       359 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  438 (513)
                      .+++.+| |.+|+. .++.+..+....                                      .+.+++|+++++.|+
T Consensus       253 wv~~~~g-v~~~~~-~g~~~~~~~~~~--------------------------------------~~~~~~f~~d~~~L~  292 (305)
T 3dr2_A          253 WSSSGTG-VCVFDS-DGQLLGHIPTPG--------------------------------------TASNCTFDQAQQRLF  292 (305)
T ss_dssp             EECCSSE-EEEECT-TSCEEEEEECSS--------------------------------------CCCEEEECTTSCEEE
T ss_pred             EEecCCc-EEEECC-CCCEEEEEECCC--------------------------------------ceeEEEEeCCCCEEE
Confidence            7777554 999997 566666664321                                      178899999998888


Q ss_pred             EecCCC
Q 010296          439 SGAGNG  444 (513)
Q Consensus       439 ~g~~dg  444 (513)
                      .++.++
T Consensus       293 it~~~~  298 (305)
T 3dr2_A          293 ITGGPC  298 (305)
T ss_dssp             EEETTE
T ss_pred             EEcCCe
Confidence            877764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.49  E-value=2.1e-11  Score=111.35  Aligned_cols=225  Identities=8%  Similarity=0.030  Sum_probs=148.7

Q ss_pred             cCCCeEEEEECCCC-CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          158 HRQSVTAVALSEDD-SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       158 h~~~V~~~~~s~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      +..-.-+..|+|++ .++++....+.|..|+..++.... +                    .....+.+++++++|++++
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~--------------------~~~~~~~~i~~~~dG~l~v   69 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V--------------------TMDAPVSSVALRQSGGYVA   69 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E--------------------ECSSCEEEEEEBTTSSEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E--------------------eCCCceEEEEECCCCCEEE
Confidence            34456688999965 455566778999999998765422 1                    2245689999999999555


Q ss_pred             EEeCCCcEEEEeCCCcceeeeccC----cCCCeEEEEEecCCCeEEEEeCC---------CcEEEEeCCCCceeEEeecc
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAFPG----HRGPVSCLTFRQGTSELFSGSFD---------RTVKIWNAEDRAYISTLFGH  303 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~  303 (513)
                      + . ++.|.+||..+++.......    ....++.++++|+|+++++....         ....||.+.....+..+...
T Consensus        70 ~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~  147 (297)
T 3g4e_A           70 T-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ  147 (297)
T ss_dssp             E-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE
T ss_pred             E-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec
Confidence            4 4 56799999987765432221    22357899999999966654321         22344444332223333334


Q ss_pred             cCCeEEEEeeCCCe-EE-EEeCCCcEEEEecC--CCeee---EE---ecCCCCeeEEEeecCCeEEEE-eCCCCEEEEec
Q 010296          304 QSEVLTIDCLRKER-VL-TVGRDRSMQLWKVP--EESRL---VF---RAPASSLECCCFISNDEFLSG-SDDGSIELWSL  372 (513)
Q Consensus       304 ~~~v~~~~~~~~~~-~~-~~~~d~~i~iwd~~--~~~~~---~~---~~~~~~v~~~~~~~~~~~~~~-~~dg~i~iwd~  372 (513)
                      ....+.++|+|++. ++ +.+..+.|.+|++.  ++...   .+   ......+..+++.++|.+.++ ...+.|.+||.
T Consensus       148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~  227 (297)
T 3g4e_A          148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP  227 (297)
T ss_dssp             ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred             cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence            45578999999885 44 44457889999873  33321   11   122346778999999986544 45678999999


Q ss_pred             CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe-cCCCEEEEecC
Q 010296          373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC-GGSDLAASGAG  442 (513)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~g~~  442 (513)
                      .+++.+..+....                                     ..+++++|. |+++.|++++.
T Consensus       228 ~tG~~~~~i~~p~-------------------------------------~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          228 VTGKRLQTVKLPV-------------------------------------DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TTCCEEEEEECSS-------------------------------------SBEEEEEEESGGGCEEEEEEB
T ss_pred             CCceEEEEEECCC-------------------------------------CCceEEEEeCCCCCEEEEEcC
Confidence            9899888876432                                     128999998 88876665543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.48  E-value=4.9e-11  Score=110.48  Aligned_cols=224  Identities=9%  Similarity=-0.052  Sum_probs=147.5

Q ss_pred             EEEEEEcCCC-CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296          223 ILALAVSSDG-RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       223 v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      ..+..|+|++ .++++...++.|.+|+..+++.. .+. ....+.+++|+++++++++. . ..|.+||..+++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence            5678899974 55666667889999999877643 232 34679999999999876654 3 449999998877543222


Q ss_pred             c----ccCCeEEEEeeCCCeEEEEeC-------CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-E-EEEeCCCCEE
Q 010296          302 G----HQSEVLTIDCLRKERVLTVGR-------DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-F-LSGSDDGSIE  368 (513)
Q Consensus       302 ~----~~~~v~~~~~~~~~~~~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~dg~i~  368 (513)
                      .    ....+..+.+.++++++++..       .+.|..++  ++....+.........++|++++. + ++.+.++.|.
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~  204 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM  204 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence            1    123578999999998776553       24566666  444433333334567899999985 4 4555678999


Q ss_pred             EEecC--CC-Cee--EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC
Q 010296          369 LWSLL--RK-KPV--YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN  443 (513)
Q Consensus       369 iwd~~--~~-~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  443 (513)
                      +|++.  ++ ...  ..+...                                  ......+..+++.++|.+.++...+
T Consensus       205 ~~d~~~~~Gl~~~~~~~~~~~----------------------------------~~~~~~p~gi~~d~~G~lwva~~~~  250 (326)
T 2ghs_A          205 RVPLDARTGLPTGKAEVFIDS----------------------------------TGIKGGMDGSVCDAEGHIWNARWGE  250 (326)
T ss_dssp             EEEBCTTTCCBSSCCEEEEEC----------------------------------TTSSSEEEEEEECTTSCEEEEEETT
T ss_pred             EEEcccccCCcccCceEEEEC----------------------------------CCCCCCCCeeEECCCCCEEEEEeCC
Confidence            99986  44 211  111100                                  0011226789999999888777667


Q ss_pred             CcEEEEEeCCCCcceeeeeecCcccEEEEEEee-cCCCEEEEEecCCC
Q 010296          444 GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFA-KSGQFLIAGVGQEP  490 (513)
Q Consensus       444 g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~~~~~dg  490 (513)
                      +.|.+|+. ++ ..+..+..  +...+++++|+ |++..|++++...+
T Consensus       251 ~~v~~~d~-~g-~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          251 GAVDRYDT-DG-NHIARYEV--PGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             TEEEEECT-TC-CEEEEEEC--SCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             CEEEEECC-CC-CEEEEEEC--CCCCcEEEEEecCCCCEEEEEecCCC
Confidence            88999997 33 33333322  34569999999 99888877645553

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.48  E-value=5.3e-12  Score=129.53  Aligned_cols=238  Identities=10%  Similarity=0.014  Sum_probs=155.8

Q ss_pred             ccCCCeEEEEECCCCCeEEEE-----eCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          157 KHRQSVTAVALSEDDSKGFSA-----SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      +|...|..++|||||++||-+     +...+|++||+.+++.+...                    .+......++|+ |
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~--------------------~~~~k~~~~~Ws-D  184 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP--------------------LKDVKFSGISWL-G  184 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE--------------------EEEEESCCCEEE-T
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc--------------------cCCceeccEEEe-C
Confidence            466789999999999999843     23367999999998854311                    001112567899 9


Q ss_pred             CCEEEEEeCCC-------------cEEEEeCCCcc----eeeeccC-cCCCeEEEEEecCCCeEEEEeC----CCcEEEE
Q 010296          232 GRYLASGGLDR-------------HIHLWDTRIQE----HIQAFPG-HRGPVSCLTFRQGTSELFSGSF----DRTVKIW  289 (513)
Q Consensus       232 ~~~l~s~~~dg-------------~i~vwd~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~iw  289 (513)
                      ++.|+.++.+.             .|++|++.+..    ++..... |...+..+.|+|++++|+....    .+.|+++
T Consensus       185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~  264 (693)
T 3iuj_A          185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVK  264 (693)
T ss_dssp             TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEE
T ss_pred             CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEE
Confidence            99999888774             39999988764    3333343 4556788999999998864332    3589999


Q ss_pred             eCCCCc-eeEEeecccCCeEEEEeeCCCeEEEEeC----CCcEEEEecCCCee---eEEecCCCCeeEEEeecCCe-EEE
Q 010296          290 NAEDRA-YISTLFGHQSEVLTIDCLRKERVLTVGR----DRSMQLWKVPEESR---LVFRAPASSLECCCFISNDE-FLS  360 (513)
Q Consensus       290 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~-~~~  360 (513)
                      ++.++. ....+..+.........+.++.|+..+.    .+.|..+++.+...   ..+..+...+.  .|++++. |+.
T Consensus       265 d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~  342 (693)
T 3iuj_A          265 DLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA  342 (693)
T ss_dssp             ETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred             ECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence            998764 3455555666555553334556664443    36799999987654   34455555554  7777764 554


Q ss_pred             -EeCCC--CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE
Q 010296          361 -GSDDG--SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA  437 (513)
Q Consensus       361 -~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  437 (513)
                       ...++  .|++|++..+ ....+...                                    ....+..+.++++++.|
T Consensus       343 ~~~~~g~~~l~~~d~~g~-~~~~l~~p------------------------------------~~~~~~~~~~~~d~~~l  385 (693)
T 3iuj_A          343 EYMVDATARVEQFDYEGK-RVREVALP------------------------------------GLGSVSGFNGKHDDPAL  385 (693)
T ss_dssp             EEEETTEEEEEEECTTSC-EEEEECCS------------------------------------SSSEEEECCCCTTCSCE
T ss_pred             EEEECCeeEEEEEECCCC-eeEEeecC------------------------------------CCceEEeeecCCCCCEE
Confidence             44454  6888888744 33443321                                    11236677778888766


Q ss_pred             EEecCC----CcEEEEEeCCC
Q 010296          438 ASGAGN----GSVRLWAIESE  454 (513)
Q Consensus       438 ~~g~~d----g~v~vwd~~~~  454 (513)
                      +....+    +.|+.||+.++
T Consensus       386 ~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          386 YFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             EEEEECSSSCCEEEEECTTTC
T ss_pred             EEEecCCCCCCEEEEEECCCC
Confidence            655443    78999998765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=3.9e-12  Score=120.14  Aligned_cols=253  Identities=8%  Similarity=-0.006  Sum_probs=166.5

Q ss_pred             CCcccchhhhhccCCCeEEEEECCCCCeEEEEe----------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCC
Q 010296          146 PEATDEFRVLLKHRQSVTAVALSEDDSKGFSAS----------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGR  215 (513)
Q Consensus       146 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (513)
                      ....+.+..+..-..+  .++++||+++|+++.          .++.|.++|..+++.+..+.-.       +..     
T Consensus       106 ~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~-------g~~-----  171 (426)
T 3c75_H          106 GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELP-------DAP-----  171 (426)
T ss_dssp             TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET-------TCC-----
T ss_pred             CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECC-------Ccc-----
Confidence            3444444444433445  899999999998876          4679999999999887655100       000     


Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCC
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGL--DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAE  292 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~  292 (513)
                      ..........++|+|+|++|+++..  ++.|.+.|+.+++.+..+....  .  ....|++ ..+++.+.||.+.+.++.
T Consensus       172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~  247 (426)
T 3c75_H          172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFA  247 (426)
T ss_dssp             CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECC
T ss_pred             ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECC
Confidence            0000122346899999999999874  5789999999999988876422  1  2334433 456677778888888886


Q ss_pred             CCceeEE----eecccCCe-EEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEec-------------CCCCeeEEEee
Q 010296          293 DRAYIST----LFGHQSEV-LTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRA-------------PASSLECCCFI  353 (513)
Q Consensus       293 ~~~~~~~----~~~~~~~v-~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~-------------~~~~v~~~~~~  353 (513)
                      +++....    +.....++ ..+.+.+++ .++.....+.|.+.|+..........             .......++++
T Consensus       248 ~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s  327 (426)
T 3c75_H          248 DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH  327 (426)
T ss_dssp             TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred             CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence            5554422    11111121 234456664 56666778899999987654321110             01122236788


Q ss_pred             cCCe-EE-EEe---------CCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296          354 SNDE-FL-SGS---------DDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY  422 (513)
Q Consensus       354 ~~~~-~~-~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  422 (513)
                      +++. ++ +..         ..+.|.++|+.+.+.+..+....                                     
T Consensus       328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-------------------------------------  370 (426)
T 3c75_H          328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-------------------------------------  370 (426)
T ss_dssp             GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-------------------------------------
T ss_pred             CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-------------------------------------
Confidence            8864 33 332         13579999999999999886432                                     


Q ss_pred             ceEEEEEEecCCC-EEEEec-CCCcEEEEEeCCC
Q 010296          423 SWVSSVTVCGGSD-LAASGA-GNGSVRLWAIESE  454 (513)
Q Consensus       423 ~~i~~~~~s~~~~-~l~~g~-~dg~v~vwd~~~~  454 (513)
                       ....++|+|+|+ ++++.. .++.|.|+|+.+.
T Consensus       371 -~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          371 -EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             -EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             -CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence             278999999999 888887 5899999999988

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.47  E-value=2.7e-12  Score=119.26  Aligned_cols=257  Identities=7%  Similarity=-0.128  Sum_probs=163.9

Q ss_pred             eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCC
Q 010296          182 SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG----------LDRHIHLWDTRI  251 (513)
Q Consensus       182 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------~dg~i~vwd~~~  251 (513)
                      +|.++|..+++.+..+                  ..+ ..+  .++++|++++++++.          .++.|.+||+.+
T Consensus        47 ~vsvID~~t~~v~~~i------------------~vG-~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T  105 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHS------------------LGA-FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT  105 (368)
T ss_dssp             EEEEEETTTTEEEEEE------------------EEC-TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred             eEEEEECCCCeEEEEE------------------eCC-CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            8889999999988765                  112 223  699999999988886          368899999999


Q ss_pred             cceeeeccCc-------CCCeEEEEEecCCCeEEEEeC--CCcEEE--EeCCCCceeEEeecccCCeEEEEeeCC--CeE
Q 010296          252 QEHIQAFPGH-------RGPVSCLTFRQGTSELFSGSF--DRTVKI--WNAEDRAYISTLFGHQSEVLTIDCLRK--ERV  318 (513)
Q Consensus       252 ~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~  318 (513)
                      ++.+..+..+       ......++|+|+|++|+++..  ...|.+  +|+.+   +..+.. .+.   +...|+  ..+
T Consensus       106 ~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~  178 (368)
T 1mda_H          106 FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAATH  178 (368)
T ss_dssp             CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTEE
T ss_pred             CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeEE
Confidence            9999887643       123568999999999998874  467888  99877   444431 111   112333  355


Q ss_pred             EEEeCCCcEEEEecCC-----CeeeE-----EecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCe--eEEeecCCC
Q 010296          319 LTVGRDRSMQLWKVPE-----ESRLV-----FRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKP--VYIVKNAHP  386 (513)
Q Consensus       319 ~~~~~d~~i~iwd~~~-----~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~--~~~~~~~~~  386 (513)
                      ++.+.|+.+.+.++.+     ++...     +.....+.   .+...+.++..+. +.|.+.|+.+...  +..+.....
T Consensus       179 ~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~  254 (368)
T 1mda_H          179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNES  254 (368)
T ss_dssp             ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCT
T ss_pred             EEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccc
Confidence            6667788888888876     22211     00111222   3334455665556 9999999865432  111111000


Q ss_pred             cccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC---------CCcEEEEEeCCCCcc
Q 010296          387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG---------NGSVRLWAIESETKD  457 (513)
Q Consensus       387 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---------dg~v~vwd~~~~~~~  457 (513)
                      ..            ...               .........++++|+++.++++..         .+.+.++|+.+. + 
T Consensus       255 ~~------------~~~---------------~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~-~-  305 (368)
T 1mda_H          255 GR------------KAD---------------NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-Q-  305 (368)
T ss_dssp             HH------------HHT---------------TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-C-
T ss_pred             cc------------ccc---------------ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC-e-
Confidence            00            000               000011223689999988886543         235669999887 2 


Q ss_pred             eeeeeecCcccEEEEEEeecCCCEEEEEec-CCCcccccccCCCc
Q 010296          458 IQPLYNLPLVGFVNSLAFAKSGQFLIAGVG-QEPRLGRWGHLPAA  501 (513)
Q Consensus       458 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-~dg~v~~W~~~~~~  501 (513)
                        .+..++......+++|+|||+++++++. .++.|.++|..+..
T Consensus       306 --vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          306 --TSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             --EEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             --EEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence              3333334457899999999997666657 68999999987764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.43  E-value=1.5e-11  Score=126.17  Aligned_cols=240  Identities=17%  Similarity=0.171  Sum_probs=154.5

Q ss_pred             CCcccEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCc-------
Q 010296          218 KQSKHILALAVSSDGRYLASGG-----LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRT-------  285 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------  285 (513)
                      +|...+..++|||||++||.+.     ....|++||+.+++.+.... +......++|+ |++.|+.++.+..       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            3556799999999999988543     23579999999998654311 11113567999 9999998887743       


Q ss_pred             ------EEEEeCCCCce----eEEeec-ccCCeEEEEeeCCCeEE--EEeC---CCcEEEEecCCC--eeeEEecCCCCe
Q 010296          286 ------VKIWNAEDRAY----ISTLFG-HQSEVLTIDCLRKERVL--TVGR---DRSMQLWKVPEE--SRLVFRAPASSL  347 (513)
Q Consensus       286 ------i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~--~~~~---d~~i~iwd~~~~--~~~~~~~~~~~v  347 (513)
                            |++|++.+...    +..... +...+..+.|+|+++.+  +...   ...|+++++.++  ....+..+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                  99999987653    322233 44457889999999644  3332   258999998765  344555555555


Q ss_pred             eEEEeecCCeEE-EEeC---CCCEEEEecCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCC
Q 010296          348 ECCCFISNDEFL-SGSD---DGSIELWSLLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSA  421 (513)
Q Consensus       348 ~~~~~~~~~~~~-~~~~---dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  421 (513)
                      .......++.|+ ....   .+.|.++++.++..  ...+.....                                   
T Consensus       284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----------------------------------  328 (693)
T 3iuj_A          284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-----------------------------------  328 (693)
T ss_dssp             EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-----------------------------------
T ss_pred             EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-----------------------------------
Confidence            554333445544 4333   36788889887654  223321111                                   


Q ss_pred             cceEEEEEEecCCCEEEEecC-CC--cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecC---CCccccc
Q 010296          422 YSWVSSVTVCGGSDLAASGAG-NG--SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ---EPRLGRW  495 (513)
Q Consensus       422 ~~~i~~~~~s~~~~~l~~g~~-dg--~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~---dg~v~~W  495 (513)
                        .+.  .|++++++|+.... +|  .|++|++..+  ....+ .++..+.+..+.++|++..|+...+.   -+.|..|
T Consensus       329 --~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~--~~~~l-~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~  401 (693)
T 3iuj_A          329 --QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK--RVREV-ALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRF  401 (693)
T ss_dssp             --SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC--EEEEE-CCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEE
T ss_pred             --CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC--eeEEe-ecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEE
Confidence              133  78898888776654 43  6888888754  22222 23455678889999998877655332   2788888


Q ss_pred             ccCCCc
Q 010296          496 GHLPAA  501 (513)
Q Consensus       496 ~~~~~~  501 (513)
                      ++..+.
T Consensus       402 d~~~g~  407 (693)
T 3iuj_A          402 EPKSGA  407 (693)
T ss_dssp             CTTTCC
T ss_pred             ECCCCe
Confidence            876553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.40  E-value=3e-11  Score=110.82  Aligned_cols=225  Identities=11%  Similarity=0.023  Sum_probs=147.0

Q ss_pred             cccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296          220 SKHILALAVSSDGR-YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       220 ~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      ........|+|+++ ++++...++.|..|+. ++. +..+..+...+..++++++|+++++...++.|.+|+.. ++...
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~  120 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL  120 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE
Confidence            34467899999998 5667777899999998 454 34455566789999999999866665566889999986 54322


Q ss_pred             Eeecc----cCCeEEEEeeCCCeEEEE-----eC-------------CCcEEEEecCCCeeeEEecCCCCeeEEEeecCC
Q 010296          299 TLFGH----QSEVLTIDCLRKERVLTV-----GR-------------DRSMQLWKVPEESRLVFRAPASSLECCCFISND  356 (513)
Q Consensus       299 ~~~~~----~~~v~~~~~~~~~~~~~~-----~~-------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  356 (513)
                      .....    ...+..+.+.++|.++.+     ..             .+.|+.|+..++...... .......++|+|++
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg  199 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDE  199 (305)
T ss_dssp             EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTS
T ss_pred             EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCC
Confidence            21111    134678999999988763     21             256888887666554433 44566789999998


Q ss_pred             e-EEEEeCC------CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEE
Q 010296          357 E-FLSGSDD------GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVT  429 (513)
Q Consensus       357 ~-~~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~  429 (513)
                      . ++++...      +.|.+|++.... +.......                                 .........++
T Consensus       200 ~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~---------------------------------~~~~~~pdgi~  245 (305)
T 3dr2_A          200 QTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFA---------------------------------SVPDGLPDGFC  245 (305)
T ss_dssp             SEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEE---------------------------------CCSSSCCCSEE
T ss_pred             CEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEE---------------------------------ECCCCCCCeEE
Confidence            6 5555444      689999987654 21111000                                 00001145688


Q ss_pred             EecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCC
Q 010296          430 VCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEP  490 (513)
Q Consensus       430 ~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg  490 (513)
                      +.++|++.++ +.+| |.+|+...  +.+..+..   ...+.+++|+|+++.|+++ +.++
T Consensus       246 ~d~~G~lwv~-~~~g-v~~~~~~g--~~~~~~~~---~~~~~~~~f~~d~~~L~it-~~~~  298 (305)
T 3dr2_A          246 VDRGGWLWSS-SGTG-VCVFDSDG--QLLGHIPT---PGTASNCTFDQAQQRLFIT-GGPC  298 (305)
T ss_dssp             ECTTSCEEEC-CSSE-EEEECTTS--CEEEEEEC---SSCCCEEEECTTSCEEEEE-ETTE
T ss_pred             ECCCCCEEEe-cCCc-EEEECCCC--CEEEEEEC---CCceeEEEEeCCCCEEEEE-cCCe
Confidence            9999985554 4454 99998743  23333332   2258889999999988887 4443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.39  E-value=3.2e-10  Score=104.93  Aligned_cols=218  Identities=8%  Similarity=-0.027  Sum_probs=143.6

Q ss_pred             CeEEEEECCCCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          161 SVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       161 ~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      -..+.+|+|++. ++++...++.|.+|+..++.... +                    .....+.+++|+|+|+++++. 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~--------------------~~~~~v~~i~~~~dg~l~v~~-  107 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H--------------------ALPFMGSALAKISDSKQLIAS-  107 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E--------------------ECSSCEEEEEEEETTEEEEEE-
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E--------------------ECCCcceEEEEeCCCeEEEEE-
Confidence            356789999754 55566678899999998765432 1                    123468999999999877754 


Q ss_pred             CCCcEEEEeCCCcceeeeccC----cCCCeEEEEEecCCCeEEEEeC------CCcEEEEeCCCCceeEEeecccCCeEE
Q 010296          240 LDRHIHLWDTRIQEHIQAFPG----HRGPVSCLTFRQGTSELFSGSF------DRTVKIWNAEDRAYISTLFGHQSEVLT  309 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~  309 (513)
                      .+ .|.+||..+++.......    ....+..++++|+|+++++...      .+.|..++  +++.. .+.........
T Consensus       108 ~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~  183 (326)
T 2ghs_A          108 DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNS  183 (326)
T ss_dssp             TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEE
T ss_pred             CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCC
Confidence            34 499999988775432221    1235889999999987665432      24566666  44433 33334445788


Q ss_pred             EEeeCCCe-EEEE-eCCCcEEEEecC--CC-ee----eEE--ecCCCCeeEEEeecCCeEEEEe-CCCCEEEEecCCCCe
Q 010296          310 IDCLRKER-VLTV-GRDRSMQLWKVP--EE-SR----LVF--RAPASSLECCCFISNDEFLSGS-DDGSIELWSLLRKKP  377 (513)
Q Consensus       310 ~~~~~~~~-~~~~-~~d~~i~iwd~~--~~-~~----~~~--~~~~~~v~~~~~~~~~~~~~~~-~dg~i~iwd~~~~~~  377 (513)
                      ++|+|++. ++.+ ..++.|.+|++.  ++ ..    ...  ......+..+++.++|.+.++. .++.|.+|+. +++.
T Consensus       184 i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~  262 (326)
T 2ghs_A          184 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH  262 (326)
T ss_dssp             EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE
T ss_pred             eEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE
Confidence            99999985 4444 457899999985  44 21    111  1123456788899988765554 5678999998 5666


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe-cCCCEEEEecC
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC-GGSDLAASGAG  442 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~g~~  442 (513)
                      +..+....                                     ..+++++|+ ++++.|++++.
T Consensus       263 ~~~i~~~~-------------------------------------~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          263 IARYEVPG-------------------------------------KQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEECSC-------------------------------------SBEEEEEEESTTSCEEEEEEB
T ss_pred             EEEEECCC-------------------------------------CCcEEEEEecCCCCEEEEEec
Confidence            66654221                                     128999998 88876655543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.37  E-value=4.1e-10  Score=106.65  Aligned_cols=271  Identities=12%  Similarity=0.053  Sum_probs=168.4

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE-EEEEcCCCCEEEEEeCCCcEEEEe
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL-ALAVSSDGRYLASGGLDRHIHLWD  248 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~vwd  248 (513)
                      .+..|++++.++.|..||..+++.+..+.......          ........+. .+..  ++..+++++.++.|..+|
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d  119 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDG----------WFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALN  119 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-------------CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccc----------cccccCcccccCceE--eCCEEEEEcCCCEEEEEE
Confidence            35678888889999999999998775441110000          0000011222 2222  356788888899999999


Q ss_pred             CCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe-----EEEEeeCCCeEEEEeC
Q 010296          249 TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV-----LTIDCLRKERVLTVGR  323 (513)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~  323 (513)
                      ..+++.+..+.............  +..+++++.++.|..+|..+++.+..........     ..... .++.++++..
T Consensus       120 ~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~v~~g~~  196 (376)
T 3q7m_A          120 TSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT-AFGAAVVGGD  196 (376)
T ss_dssp             TTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE-ETTEEEECCT
T ss_pred             CCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE-ECCEEEEEcC
Confidence            99999876665433222222222  4578888899999999999999887765332211     11111 2677888888


Q ss_pred             CCcEEEEecCCCeeeEEecCCCC-----------eeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296          324 DRSMQLWKVPEESRLVFRAPASS-----------LECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK  392 (513)
Q Consensus       324 d~~i~iwd~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  392 (513)
                      ++.|..+|..+++.........+           +.......++.+++++.++.|..+|..+++.+.......       
T Consensus       197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-------  269 (376)
T 3q7m_A          197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-------  269 (376)
T ss_dssp             TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-------
T ss_pred             CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-------
Confidence            99999999988877633322110           111112235678888899999999999998876654211       


Q ss_pred             CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEE
Q 010296          393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNS  472 (513)
Q Consensus       393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~  472 (513)
                                                      ...+..  ++..|++++.+|.|..+|..++...... ... ....+..
T Consensus       270 --------------------------------~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~-~~~-~~~~~~~  313 (376)
T 3q7m_A          270 --------------------------------VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQ-SDL-LHRLLTS  313 (376)
T ss_dssp             --------------------------------EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEE-CTT-TTSCCCC
T ss_pred             --------------------------------CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEee-ccc-CCCcccC
Confidence                                            333333  3557888888999999999988432221 111 1111222


Q ss_pred             EEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          473 LAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       473 v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ...  .+..|+++ +.+|.|.+++..++.
T Consensus       314 ~~~--~~~~l~v~-~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          314 PVL--YNGNLVVG-DSEGYLHWINVEDGR  339 (376)
T ss_dssp             CEE--ETTEEEEE-CTTSEEEEEETTTCC
T ss_pred             CEE--ECCEEEEE-eCCCeEEEEECCCCc
Confidence            222  24567777 678889999877664

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.36  E-value=1.2e-11  Score=115.04  Aligned_cols=267  Identities=10%  Similarity=-0.013  Sum_probs=165.9

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEe----------CCceEEEEeCCCCccccccCCChhhhccCCCCCCC
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSAS----------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQ  213 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (513)
                      .+....+.+.++..-..+  .+.|+||+++|+++.          .+++|.+||+.+++.+..+.-..       ..   
T Consensus        51 ID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~-------~~---  118 (368)
T 1mda_H           51 SCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD-------AP---  118 (368)
T ss_dssp             EETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT-------SC---
T ss_pred             EECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC-------cc---
Confidence            345555566666544556  799999999999886          37899999999999887651000       00   


Q ss_pred             CCCCCCcccEEEEEEcCCCCEEEEEeC--CCcEEE--EeCCCcceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEE
Q 010296          214 GRATKQSKHILALAVSSDGRYLASGGL--DRHIHL--WDTRIQEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKI  288 (513)
Q Consensus       214 ~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i  288 (513)
                       .+ ........++|+|+|++|+++..  ...|.+  +|+.+   +..+... +.   +.+.|++. .+++.+.||.+.+
T Consensus       119 -~~-~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~  189 (368)
T 1mda_H          119 -RF-SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             -SC-CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEE
T ss_pred             -cc-ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEE
Confidence             00 00122446899999999998875  467888  99877   3344311 11   22344443 3456667888888


Q ss_pred             EeCCC-----CceeEE----eecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEec----------C---CCC
Q 010296          289 WNAED-----RAYIST----LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRA----------P---ASS  346 (513)
Q Consensus       289 wd~~~-----~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~----------~---~~~  346 (513)
                      .++.+     ++.+..    +.....+.   .+..++.++..+. +.|.+.|+.+........          .   ...
T Consensus       190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g  265 (368)
T 1mda_H          190 SDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG  265 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred             EECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence            88876     333211    11112233   2334556676666 999999986543211110          0   111


Q ss_pred             eeEEEeecCCe-EEEE-e---C-----CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCc
Q 010296          347 LECCCFISNDE-FLSG-S---D-----DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSY  416 (513)
Q Consensus       347 v~~~~~~~~~~-~~~~-~---~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  416 (513)
                      ...+.+++++. ++++ .   .     .+.+.++|+.+.+.+..+....                               
T Consensus       266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-------------------------------  314 (368)
T 1mda_H          266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-------------------------------  314 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-------------------------------
T ss_pred             ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-------------------------------
Confidence            22367999874 4433 3   1     2356699999999888776432                               


Q ss_pred             CCCCCcceEEEEEEecCCC-EEEEec-CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeec
Q 010296          417 HSSSAYSWVSSVTVCGGSD-LAASGA-GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAK  477 (513)
Q Consensus       417 ~~~~~~~~i~~~~~s~~~~-~l~~g~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp  477 (513)
                             ....++|+|+|+ ++++.. .++.|.++|+.+.    +.+..++.......+++.+
T Consensus       315 -------~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~----kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          315 -------DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD----QDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             -------EECEEEECCSSSCEEEEEETTTTEEEEEESSSC----EEEEECCCCSCCCEEECCC
T ss_pred             -------CcceEEECCCCCEEEEEccCCCCeEEEEECCCC----cEEEEEECCCCCCEEEeec
Confidence                   288999999997 456666 5899999999987    3344444444455566543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.35  E-value=4e-10  Score=105.02  Aligned_cols=236  Identities=13%  Similarity=0.058  Sum_probs=145.1

Q ss_pred             CCCCEEEEE-eCCCcEEEEeCCCc----ceeeecc-------CcCCCeEEEEEecCCCeEEEEeCC------CcEEEEeC
Q 010296          230 SDGRYLASG-GLDRHIHLWDTRIQ----EHIQAFP-------GHRGPVSCLTFRQGTSELFSGSFD------RTVKIWNA  291 (513)
Q Consensus       230 ~~~~~l~s~-~~dg~i~vwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~  291 (513)
                      ++.++|++. ..++.|+|+|+.+.    +.+.++.       .....-..+..+|+| .++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            777777664 46789999998765    5555552       111245667888999 66665554      78999999


Q ss_pred             CCCceeEEeecccC---CeEEEEeeCCCeEEEEeC--------------------CCcEEEEecCCCeeeEEecCC---C
Q 010296          292 EDRAYISTLFGHQS---EVLTIDCLRKERVLTVGR--------------------DRSMQLWKVPEESRLVFRAPA---S  345 (513)
Q Consensus       292 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~--------------------d~~i~iwd~~~~~~~~~~~~~---~  345 (513)
                      .+++.+.++.....   ..+.+-|+|++.++..+.                    ..+|.+||+.+.+........   .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            99999988863322   234577899886665553                    789999999987655322221   2


Q ss_pred             CeeEEEe--ecCCe--EEEEe-----CCCCEEEEecCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCC
Q 010296          346 SLECCCF--ISNDE--FLSGS-----DDGSIELWSLLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPG  414 (513)
Q Consensus       346 ~v~~~~~--~~~~~--~~~~~-----~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  414 (513)
                      ....+.|  +|++.  ++++-     .+++|.+|....+..  ...+........                   +.+...
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~-------------------~~lp~~  312 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE-------------------GNLPEI  312 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC-------------------SSCCGG
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc-------------------cccccc
Confidence            3334444  89986  44555     677888887765421  111111100000                   000000


Q ss_pred             CcCCCCCcceEEEEEEecCCCEEEEecC-CCcEEEEEeCCCCcceeeeeecCcc---------------cEEEEEEeecC
Q 010296          415 SYHSSSAYSWVSSVTVCGGSDLAASGAG-NGSVRLWAIESETKDIQPLYNLPLV---------------GFVNSLAFAKS  478 (513)
Q Consensus       415 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~---------------~~v~~v~~sp~  478 (513)
                      .............|.+||||++|+++.. .+.|.+||+.... ..+.+..++..               +....++++||
T Consensus       313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~-~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD  391 (462)
T 2ece_A          313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF-KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD  391 (462)
T ss_dssp             GGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTT-SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred             ccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC-CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence            0000000123788999999999988764 5899999996432 22333322222               13588999999


Q ss_pred             CCEEEEEe
Q 010296          479 GQFLIAGV  486 (513)
Q Consensus       479 ~~~l~~~~  486 (513)
                      |++|+++.
T Consensus       392 Gk~LyVaN  399 (462)
T 2ece_A          392 GRRVYVTN  399 (462)
T ss_dssp             SSEEEEEC
T ss_pred             CCEEEEEc
Confidence            99999994

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.31  E-value=1.3e-10  Score=107.80  Aligned_cols=265  Identities=10%  Similarity=0.047  Sum_probs=169.6

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ...+.++...+++. |+.++.+  |..||. +++....+.                   ..........+.  +..|.++
T Consensus        59 ~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~-------------------~~~~~~~~~~~~--~~~l~v~  113 (330)
T 3hxj_A           59 EIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFD-------------------TKKAIVSDFTIF--EDILYVT  113 (330)
T ss_dssp             GEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSC-------------------C-----CCEEEE--TTEEEEE
T ss_pred             CCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEE-------------------CCCCcccCceEE--CCEEEEE
Confidence            34456777777765 4444444  888885 555443321                   011111122233  5567788


Q ss_pred             eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeE
Q 010296          239 GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERV  318 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  318 (513)
                      +.++.|..+|.. ++....+..+...+.++...+++. |+.++.++.|..||.. ++.+..+......+.++...+++.+
T Consensus       114 t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l  190 (330)
T 3hxj_A          114 SMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTI  190 (330)
T ss_dssp             CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCE
T ss_pred             ecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEE
Confidence            888999999988 777666655555566777776665 6667788999999998 7777666655566777777778888


Q ss_pred             EEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccC
Q 010296          319 LTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQD  397 (513)
Q Consensus       319 ~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (513)
                      ++++  +.|..|+ .++... ........+.++...+++.+.+++.++.|..++ .+++.+..+......          
T Consensus       191 ~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~----------  256 (330)
T 3hxj_A          191 YFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRI----------  256 (330)
T ss_dssp             EEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEEC-TTSCEEEEEECSSCC----------
T ss_pred             EEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCc----------
Confidence            8777  8899999 554444 444445667788888888888898888899997 456665554422110          


Q ss_pred             cCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeec
Q 010296          398 EGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAK  477 (513)
Q Consensus       398 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp  477 (513)
                                                 +.++.+.+++ .|.+++.+|.|..+|. ++ ..+.... . ....+.++...+
T Consensus       257 ---------------------------~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g-~~~~~~~-~-~~~~~~~~~~d~  304 (330)
T 3hxj_A          257 ---------------------------ESSPVIGNTD-TIYFGSYDGHLYAINP-DG-TEKWNFE-T-GSWIIATPVIDE  304 (330)
T ss_dssp             ---------------------------CSCCEECTTS-CEEEECTTCEEEEECT-TS-CEEEEEE-C-SSCCCSCCEECT
T ss_pred             ---------------------------cccceEcCCC-eEEEecCCCCEEEECC-CC-cEEEEEE-c-CCccccceEEcC
Confidence                                       2234445455 5666777888999985 44 2222222 1 244566777778


Q ss_pred             CCCEEEEEecCCCcccccccCC
Q 010296          478 SGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       478 ~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      +|.+. ++ +.+|.+.+.....
T Consensus       305 ~g~l~-~g-t~~G~~~~~~~~~  324 (330)
T 3hxj_A          305 NGTIY-FG-TRNGKFYALFNLE  324 (330)
T ss_dssp             TCCEE-EE-CTTSCEEEEEC--
T ss_pred             CCEEE-EE-cCCCeEEEEeccc
Confidence            88754 45 6788887765443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.31  E-value=2.2e-10  Score=116.76  Aligned_cols=311  Identities=10%  Similarity=0.080  Sum_probs=175.0

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR  250 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~  250 (513)
                      +..|++++.++.|.-+|..+++.+..+............     ......   ..+++  .+..|++++.++.|..+|..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~-----~~~~~~---~~~~~--~~g~v~v~~~dg~l~AlDa~  139 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEA-----CCDAVN---RGVAV--WKGKVYVGVLDGRLEAIDAK  139 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGC-----TTCSCC---CCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccc-----cccCCC---CccEE--ECCEEEEEccCCEEEEEECC
Confidence            567888888999999999999988765221110000000     000000   11122  25678888899999999999


Q ss_pred             CcceeeeccCc--CCCeEEEEEec---CCCeEEEEe------CCCcEEEEeCCCCceeEEeeccc---------------
Q 010296          251 IQEHIQAFPGH--RGPVSCLTFRQ---GTSELFSGS------FDRTVKIWNAEDRAYISTLFGHQ---------------  304 (513)
Q Consensus       251 ~~~~~~~~~~~--~~~v~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~---------------  304 (513)
                      +|+.+..+...  ......+..+|   ++ .+++++      .+|.|+.||..+++.+..+....               
T Consensus       140 TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~  218 (689)
T 1yiq_A          140 TGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIA  218 (689)
T ss_dssp             TCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred             CCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccc
Confidence            99988665432  11101111111   44 444443      36899999999999887764210               


Q ss_pred             ----------------CCeEEEEeeCC-CeEEEEeCCC-------------------cEEEEecCCCeeeE-Eec--CC-
Q 010296          305 ----------------SEVLTIDCLRK-ERVLTVGRDR-------------------SMQLWKVPEESRLV-FRA--PA-  344 (513)
Q Consensus       305 ----------------~~v~~~~~~~~-~~~~~~~~d~-------------------~i~iwd~~~~~~~~-~~~--~~-  344 (513)
                                      .....+++.++ +.++++..++                   .|..||..+++.+. +..  +. 
T Consensus       219 ~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~  298 (689)
T 1yiq_A          219 AKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA  298 (689)
T ss_dssp             HTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC
T ss_pred             ccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc
Confidence                            01124667775 4555666655                   39999999988773 322  11 


Q ss_pred             ------CCeeEEEeecCC----eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcc-cCcCccc----c--ccCC
Q 010296          345 ------SSLECCCFISND----EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFE-QDEGKIS----N--GHSE  407 (513)
Q Consensus       345 ------~~v~~~~~~~~~----~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~----~--~~~~  407 (513)
                            ..+.......+|    .++.++.+|.++++|..+++++............-  +. .....+.    .  ....
T Consensus       299 wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~--~~~~~~~pi~~~~~~~~~~~~  376 (689)
T 1yiq_A          299 WDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG--MDMKTGRPILDEENAAYWKNG  376 (689)
T ss_dssp             SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE--EETTTTEEEECHHHHCTTTSS
T ss_pred             ccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc--cCccCCCcccchhhccccCCC
Confidence                  112222222345    37788999999999999999987665433110000  00 0000000    0  0000


Q ss_pred             CCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC---------------------------------------------
Q 010296          408 NGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG---------------------------------------------  442 (513)
Q Consensus       408 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---------------------------------------------  442 (513)
                      ...+.....  .+.. .-..++|+|+..+|++...                                             
T Consensus       377 ~~~~~~p~~--~Gg~-~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~  453 (689)
T 1yiq_A          377 KRNLVTPAF--WGAH-DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSW  453 (689)
T ss_dssp             SCEEESSCT--TCSS-CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTC
T ss_pred             CeeEeCCCc--cccc-CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCc
Confidence            000000000  0000 1234678887777766521                                             


Q ss_pred             CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          443 NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       443 dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      +|.|+.||+.+++..    ...++..++....++..+.+++++ +.||.|+.||..++..
T Consensus       454 ~g~l~A~D~~tG~~~----W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAA----WEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGEK  508 (689)
T ss_dssp             EEEEEEEETTTTEEE----EEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCE
T ss_pred             ceeEEEEECCCCCeE----eEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCCcc
Confidence            378999999998332    222233334444667788888888 8899999999887754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.29  E-value=4.4e-10  Score=114.52  Aligned_cols=270  Identities=11%  Similarity=0.150  Sum_probs=162.7

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe------CCCc
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG------LDRH  243 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~  243 (513)
                      .+..|++++.|+.|..+|..+++.+..+....         .+.........++.    . ++. +++++      .+|.
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~---------~~~~~~~~~~sP~v----~-~g~-v~vg~~~~~~~~~g~  184 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA---------DHKRSYTITGAPRV----V-NGK-VVIGNGGAEFGVRGY  184 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCS---------CTTSCCBCCSCCEE----E-TTE-EEECCBCTTTCCBCE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcC---------CCCCCccccCCcEE----E-CCE-EEEEeCCCccCCCCE
Confidence            35678889999999999999999876542110         00000000111111    1 444 44443      3689


Q ss_pred             EEEEeCCCcceeeeccCc-------------------------------CCCeEEEEEecCCCeEEEEeCCCc-------
Q 010296          244 IHLWDTRIQEHIQAFPGH-------------------------------RGPVSCLTFRQGTSELFSGSFDRT-------  285 (513)
Q Consensus       244 i~vwd~~~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~~~l~~~~~dg~-------  285 (513)
                      |+.||..+|+.+-.+...                               ......++++|+..+++.++.++.       
T Consensus       185 v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~  264 (689)
T 1yiq_A          185 VTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWR  264 (689)
T ss_dssp             EEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred             EEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCC
Confidence            999999999987655310                               011125788998889998887763       


Q ss_pred             ------------EEEEeCCCCceeEEeeccc---------CCeEEEEeeCCC----eEEEEeCCCcEEEEecCCCeeeEE
Q 010296          286 ------------VKIWNAEDRAYISTLFGHQ---------SEVLTIDCLRKE----RVLTVGRDRSMQLWKVPEESRLVF  340 (513)
Q Consensus       286 ------------i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~----~~~~~~~d~~i~iwd~~~~~~~~~  340 (513)
                                  |..||..+++.+..+....         .++.......++    .++.++.+|.++++|..+++.+..
T Consensus       265 ~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          265 SQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             HTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             CCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence                        9999999999988775421         122222222245    356788899999999999887621


Q ss_pred             ecCC----------------------------------------CCeeEEEeecCCe-EEEEeC----------------
Q 010296          341 RAPA----------------------------------------SSLECCCFISNDE-FLSGSD----------------  363 (513)
Q Consensus       341 ~~~~----------------------------------------~~v~~~~~~~~~~-~~~~~~----------------  363 (513)
                      ....                                        ..-..++++|+.. +++...                
T Consensus       345 ~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~  424 (689)
T 1yiq_A          345 KGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRN  424 (689)
T ss_dssp             EESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCC
T ss_pred             ccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccc
Confidence            1000                                        0011256677653 333321                


Q ss_pred             -----------------------------CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCC
Q 010296          364 -----------------------------DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPG  414 (513)
Q Consensus       364 -----------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  414 (513)
                                                   +|.|+.||+.+++.+..+....+                            
T Consensus       425 ~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~----------------------------  476 (689)
T 1yiq_A          425 PFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI----------------------------  476 (689)
T ss_dssp             SCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS----------------------------
T ss_pred             ccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC----------------------------
Confidence                                         36688888888877776654321                            


Q ss_pred             CcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCC-EEEEEecCCCccc
Q 010296          415 SYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLG  493 (513)
Q Consensus       415 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~  493 (513)
                                +....++..+.++++|+.||.|+.||..+++. +-.+. .+......-+.|..+|+ |+++.+|.-|.+-
T Consensus       477 ----------~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~-lw~~~-~~~~~~~~p~ty~~~G~qyv~~~~G~gg~~~  544 (689)
T 1yiq_A          477 ----------FNGGTLSTAGNLVFEGSADGRVIAYAADTGEK-LWEQP-AASGVMAAPVTYSVDGEQYVTFMAGWGGAFS  544 (689)
T ss_dssp             ----------CCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEE-CSSCCCSCCEEEEETTEEEEEEEECCCTTHH
T ss_pred             ----------ccCccceECCCEEEEECCCCcEEEEECCCCcc-ceeee-CCCCcccCceEEEECCEEEEEEEecCCcccc
Confidence                      12224455677999999999999999999833 22222 12222223366788887 5555545444443


Q ss_pred             c
Q 010296          494 R  494 (513)
Q Consensus       494 ~  494 (513)
                      +
T Consensus       545 ~  545 (689)
T 1yiq_A          545 T  545 (689)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.29  E-value=1.7e-09  Score=102.31  Aligned_cols=259  Identities=9%  Similarity=0.012  Sum_probs=162.5

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT  249 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~  249 (513)
                      ++..+++++.++.|..+|..+++.+.......               .....++    ..  +..+++++.++.|..+|.
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~---------------~~~~~p~----~~--~~~v~v~~~~g~l~~~d~  160 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG---------------EALSRPV----VS--DGLVLIHTSNGQLQALNE  160 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSS---------------CCCSCCE----EE--TTEEEEECTTSEEEEEET
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC---------------ceEcCCE----EE--CCEEEEEcCCCeEEEEEC
Confidence            45678888899999999999998765431100               0011111    11  457888888999999999


Q ss_pred             CCcceeeeccCcCCCe-----EEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC----------eEEEEeeC
Q 010296          250 RIQEHIQAFPGHRGPV-----SCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE----------VLTIDCLR  314 (513)
Q Consensus       250 ~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v~~~~~~~  314 (513)
                      .+++.+..+.......     ......  +..++.++.++.|..+|..+++.+.........          +.......
T Consensus       161 ~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~  238 (376)
T 3q7m_A          161 ADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV  238 (376)
T ss_dssp             TTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE
T ss_pred             CCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE
Confidence            9998877665322111     122222  456888888999999999999887766432110          11111112


Q ss_pred             CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296          315 KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF  394 (513)
Q Consensus       315 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
                      ++.+++++.++.+..+|..+++.+..... .....+.. .++.+++++.++.|..+|..+++.+.........       
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-------  309 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIMWKREL-GSVNDFIV-DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR-------  309 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEEEEECC-CCEEEEEE-ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS-------
T ss_pred             CCEEEEEecCcEEEEEECCCCcEEeeccC-CCCCCceE-ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC-------
Confidence            67888888899999999998877644332 23334433 4667888889999999999999987665421110       


Q ss_pred             ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEE
Q 010296          395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLA  474 (513)
Q Consensus       395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~  474 (513)
                                                   .+....+.  +..|++++.+|.|+++|..++.. +.... .. ...+.+..
T Consensus       310 -----------------------------~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~-~~~~~-~~-~~~~~~~~  355 (376)
T 3q7m_A          310 -----------------------------LLTSPVLY--NGNLVVGDSEGYLHWINVEDGRF-VAQQK-VD-SSGFQTEP  355 (376)
T ss_dssp             -----------------------------CCCCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEE-CC-TTCBCSCC
T ss_pred             -----------------------------cccCCEEE--CCEEEEEeCCCeEEEEECCCCcE-EEEEe-cC-CCcceeCC
Confidence                                         01112222  45788888999999999998832 22221 11 12222111


Q ss_pred             eecCCCEEEEEecCCCcccccc
Q 010296          475 FAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       475 ~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      .. .+..|+++ +.+|.|..|+
T Consensus       356 ~~-~~~~l~v~-~~~G~l~~~~  375 (376)
T 3q7m_A          356 VA-ADGKLLIQ-AKDGTVYSIT  375 (376)
T ss_dssp             EE-ETTEEEEE-BTTSCEEEEE
T ss_pred             EE-ECCEEEEE-eCCCEEEEEe
Confidence            11 24567777 7889888875

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.29  E-value=3.8e-10  Score=109.02  Aligned_cols=288  Identities=10%  Similarity=0.088  Sum_probs=171.1

Q ss_pred             EEEEeCCceEEEEeCCCCccccccC---C-----------Chhhh------------ccCCCCCCCCCCCCCcccEEEEE
Q 010296          174 GFSASKDGSILHWDVSSGKGVKYLW---P-----------SEEVL------------KSHGAKDPQGRATKQSKHILALA  227 (513)
Q Consensus       174 l~t~~~dg~v~iwd~~~~~~~~~~~---~-----------~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~  227 (513)
                      |.+|+..|.|+|+=+.+++.+..+.   +           +...+            ...+..... .-..|.   ..+.
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~-~gd~hh---~~~s   93 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHD-NGDLHH---VHMS   93 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCC-CCCBCC---EEEE
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecc-cCCCCc---cccC
Confidence            5688999999999999998877552   0           00111            111100000 011111   3344


Q ss_pred             E---cCCCCEEEEEeC-CCcEEEEeCCCcceeeeccC-cCCCeEEEEE-e-cCCCeEEEEe------------------C
Q 010296          228 V---SSDGRYLASGGL-DRHIHLWDTRIQEHIQAFPG-HRGPVSCLTF-R-QGTSELFSGS------------------F  282 (513)
Q Consensus       228 ~---s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~------------------~  282 (513)
                      +   .+||++|+.... ++.|.+.|+.+.++...+.- ....+..+++ + |++.++++++                  .
T Consensus        94 ~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A           94 FTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence            4   237888877665 56799999999998774432 2345788888 5 9999999884                  2


Q ss_pred             CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCC------------------------------------
Q 010296          283 DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDR------------------------------------  325 (513)
Q Consensus       283 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~------------------------------------  325 (513)
                      ++.|.++|..+.+.+.++.-.. ....++++|++.++ +++.+.                                    
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            4689999999998888776322 45667788887554 444322                                    


Q ss_pred             --cEEEEecCC--Cee-eEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCc
Q 010296          326 --SMQLWKVPE--ESR-LVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDE  398 (513)
Q Consensus       326 --~i~iwd~~~--~~~-~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (513)
                        .|.+.|..+  +.. +....-.....++.++|+|+  ++++..+.+|.++|+.+.+...  ...         +....
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--~~~---------l~~~~  321 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YEN---------ADPRS  321 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSC---------CCGGG
T ss_pred             ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc--ccc---------cCccc
Confidence              356666665  323 22222234566789999997  4466678999999998653110  000         00000


Q ss_pred             CccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC------CcceeeeeecC-cccE--
Q 010296          399 GKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE------TKDIQPLYNLP-LVGF--  469 (513)
Q Consensus       399 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~------~~~~~~~~~~~-~~~~--  469 (513)
                      ..+..               .........++|+|+|...++.--|+.|.+|++...      .+....+..++ |..+  
T Consensus       322 ~v~~~---------------v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh  386 (595)
T 1fwx_A          322 AVVAE---------------PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH  386 (595)
T ss_dssp             GEEEC---------------CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE
T ss_pred             ceEEE---------------cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccc
Confidence            00000               011112788999999954456668899999999762      01122222222 2111  


Q ss_pred             E---EEEEeecCCCEEEEEecCC-Ccc
Q 010296          470 V---NSLAFAKSGQFLIAGVGQE-PRL  492 (513)
Q Consensus       470 v---~~v~~sp~~~~l~~~~~~d-g~v  492 (513)
                      .   .++.++|||++|+++.... .++
T Consensus       387 ~~~~~g~t~~~DGk~l~~~Nk~skdr~  413 (595)
T 1fwx_A          387 LKTVMGETLDATNDWLVCLSKFSKDRF  413 (595)
T ss_dssp             EEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred             ceeccceEeCCCCCEEEEcCCCCcccc
Confidence            1   2235689999999986544 345

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.27  E-value=6.5e-10  Score=113.02  Aligned_cols=310  Identities=9%  Similarity=0.025  Sum_probs=180.1

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR  250 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~  250 (513)
                      +..|++++.++.|.-+|..+++.+..+..........     . ......  ...+++  .+..|++++.++.|..+|..
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~-----~-~~~~~~--~~~~a~--~~~~v~v~~~dg~l~alD~~  146 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGF-----K-GCCDVV--NRGVAL--WKGKVYVGAWDGRLIALDAA  146 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGG-----G-SSSCSC--CCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc-----c-ccccCC--CCCceE--ECCEEEEEcCCCEEEEEECC
Confidence            5567778888999999999999887653221100000     0 000000  011222  35678888999999999999


Q ss_pred             CcceeeeccCc-C----CCeEE-EEEecCCCeEEEEeC------CCcEEEEeCCCCceeEEeecccCC------------
Q 010296          251 IQEHIQAFPGH-R----GPVSC-LTFRQGTSELFSGSF------DRTVKIWNAEDRAYISTLFGHQSE------------  306 (513)
Q Consensus       251 ~~~~~~~~~~~-~----~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------  306 (513)
                      +|+.+..+..+ .    ..+.+ ..+  .+..+++++.      ++.|+.||..+++.+..+......            
T Consensus       147 tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~  224 (677)
T 1kb0_A          147 TGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKR  224 (677)
T ss_dssp             TCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred             CCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccc
Confidence            99988776644 1    11111 111  1345555543      689999999999998776532211            


Q ss_pred             --------------------eEEEEeeCCC-eEEEEeCCC-------------------cEEEEecCCCeeeEE-ec--C
Q 010296          307 --------------------VLTIDCLRKE-RVLTVGRDR-------------------SMQLWKVPEESRLVF-RA--P  343 (513)
Q Consensus       307 --------------------v~~~~~~~~~-~~~~~~~d~-------------------~i~iwd~~~~~~~~~-~~--~  343 (513)
                                          ...+++.+++ .++++..++                   .|..+|..+++.+.. ..  +
T Consensus       225 g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~  304 (677)
T 1kb0_A          225 AARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG  304 (677)
T ss_dssp             HHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred             ccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC
Confidence                                1245677754 555555443                   599999999887632 22  1


Q ss_pred             C-------CCeeEEEeecCC----eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccc-ccCCCCC-
Q 010296          344 A-------SSLECCCFISND----EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISN-GHSENGN-  410 (513)
Q Consensus       344 ~-------~~v~~~~~~~~~----~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~-  410 (513)
                      .       .....+....+|    .++.++.+|.|+++|..+++++..+........  ..+......+.. .....+. 
T Consensus       305 d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~--~~~d~~g~~~~~~~~~~~~~~  382 (677)
T 1kb0_A          305 DNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA--SGYDKHGKPIGIAAARDGSKP  382 (677)
T ss_dssp             CCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE--EEECTTSCEEECGGGGCTTSC
T ss_pred             cccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc--cccCCCCceeeccccCcCCCc
Confidence            1       122223333355    377899999999999999999888764321100  000000000000 0000000 


Q ss_pred             -CCCCCcCCCCCcceEEEEEEecCCCEEEEecC-------------------------------------------CCcE
Q 010296          411 -LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-------------------------------------------NGSV  446 (513)
Q Consensus       411 -~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-------------------------------------------dg~v  446 (513)
                       +.....  .+... -..++|+|++.++++...                                           .|.|
T Consensus       383 ~~~~P~~--~G~~~-w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l  459 (677)
T 1kb0_A          383 QDAVPGP--YGAHN-WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRL  459 (677)
T ss_dssp             EECSSCT--TCSSC-SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEE
T ss_pred             cEECcCc--ccccC-CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEE
Confidence             000000  11111 136788888887777533                                           2789


Q ss_pred             EEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      ..||+.+++.    +...++..++....+++.+.+++++ +.||.|++||..++..
T Consensus       460 ~A~D~~tG~~----~W~~~~~~~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          460 LAWDPVAQKA----AWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEEETTTTEE----EEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCE
T ss_pred             EEEeCCCCcE----EeecCCCCCCcCcceEeCCCEEEEE-CCCCcEEEEECCCCce
Confidence            9999998832    3333333445556677888888888 8999999999887754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.27  E-value=6.7e-10  Score=103.03  Aligned_cols=219  Identities=13%  Similarity=0.075  Sum_probs=152.4

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR  250 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~  250 (513)
                      +..|+.++.++.|..+|.. +.....+                   ..+...+.++...+++. |+.++.++.|..||..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~-------------------~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~  165 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRF-------------------KTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD  165 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEE-------------------ECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEE-------------------cCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence            5567888888999999988 6554332                   11122344556666676 6667778999999998


Q ss_pred             CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEE
Q 010296          251 IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLW  330 (513)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iw  330 (513)
                       ++.+..+......+.++.+.+++..+ .++  +.|..+| .+++.+..+......+.++...+++.+++++.++.|..+
T Consensus       166 -g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~  240 (330)
T 3hxj_A          166 -GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAI  240 (330)
T ss_dssp             -SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEE
T ss_pred             -CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEE
Confidence             77776666555667777887777644 444  8899999 777777666655567888888888899999988999999


Q ss_pred             ecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCC
Q 010296          331 KVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN  410 (513)
Q Consensus       331 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  410 (513)
                      +........+......+..+.+.+++.+.+++.+|.|..+|. +++.+..+.....                        
T Consensus       241 ~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~------------------------  295 (330)
T 3hxj_A          241 NPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSW------------------------  295 (330)
T ss_dssp             CTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSC------------------------
T ss_pred             CCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCc------------------------
Confidence            864444444444444444566667888999999999999995 6776665542211                        


Q ss_pred             CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          411 LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       411 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                   .+.++...+++. |..|+.+|.+++......
T Consensus       296 -------------~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          296 -------------IIATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             -------------CCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             -------------cccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence                         155666767775 566888999998876543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.23  E-value=3.8e-12  Score=119.89  Aligned_cols=203  Identities=10%  Similarity=0.005  Sum_probs=115.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC-CeE-
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS-EVL-  308 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~-  308 (513)
                      ++..|++++.+|.|+.||..+|+.+..+..  +.+.+..+..++..+++++.||.|+.||..+++.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            477899999999999999999999888775  5555556667777888888999999999999887666543221 111 


Q ss_pred             EEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296          309 TIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKPVYIVKNAHPL  387 (513)
Q Consensus       309 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (513)
                      +..+..++.+++++.++.|+.||..+++.+........   ..++|.+ .+++++.++.|+.||..+++.+..+....  
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--  160 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--  160 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--
Confidence            11112356777888899999999998877633222221   2334444 57788999999999999998776654210  


Q ss_pred             ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC---CEEEEecCCCcEEEEEeCCCCcceeeeeec
Q 010296          388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS---DLAASGAGNGSVRLWAIESETKDIQPLYNL  464 (513)
Q Consensus       388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~  464 (513)
                                                           ....+++++.   ..+++++.+|.|+.||..++...    ...
T Consensus       161 -------------------------------------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~----W~~  199 (369)
T 2hz6_A          161 -------------------------------------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL----WIQ  199 (369)
T ss_dssp             -------------------------------------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE----EEE
T ss_pred             -------------------------------------ccCccccCCccccceEEEECCCCEEEEEECCCCcEE----EEe
Confidence                                                 1111122221   45667888999999999988332    222


Q ss_pred             CcccEE-EEEEeecCCCE
Q 010296          465 PLVGFV-NSLAFAKSGQF  481 (513)
Q Consensus       465 ~~~~~v-~~v~~sp~~~~  481 (513)
                      ....++ ....++++|..
T Consensus       200 ~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          200 NYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             ECSSCEEEEEECTTSSCE
T ss_pred             cCCCceEEEEEecCCceE
Confidence            233344 34456667653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.21  E-value=3.5e-12  Score=120.11  Aligned_cols=185  Identities=10%  Similarity=0.013  Sum_probs=106.8

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT  249 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~  249 (513)
                      ++..|++++.||.|+.||..+++.+..+..                     ..+.+..+..++..+++++.+|.|+.||.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---------------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~   66 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---------------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGS   66 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---------------------CCSCCCC-----CCEEECTTTCCEEEC--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---------------------CCceecceEcCCCEEEEeCCCCEEEEEEC
Confidence            577899999999999999999998765411                     22333344556777888889999999999


Q ss_pred             CCcceeeeccCcCCC-eE-EEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-CCeEEEEeCCCc
Q 010296          250 RIQEHIQAFPGHRGP-VS-CLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-KERVLTVGRDRS  326 (513)
Q Consensus       250 ~~~~~~~~~~~~~~~-v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~  326 (513)
                      .+++.+..+..+... +. +..+. .+..|++++.++.|+.||..+|+.+..+..+..    ..++| ++.+++++.++.
T Consensus        67 ~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~  141 (369)
T 2hz6_A           67 KNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSLLYLGRTEYT  141 (369)
T ss_dssp             ---CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEE
T ss_pred             CCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCEEEEEecCCE
Confidence            998876665433211 10 00111 345677888899999999999998877764431    23344 456778888999


Q ss_pred             EEEEecCCCeee-EEecCCCCeeEEEeecC----CeEEEEeCCCCEEEEecCCCCeeEEee
Q 010296          327 MQLWKVPEESRL-VFRAPASSLECCCFISN----DEFLSGSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       327 i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~----~~~~~~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      |+.||..+++.+ .+....  .....+..+    +.+++++.+|.|+.||..+++.+....
T Consensus       142 v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          142 ITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            999999887754 221110  111223332    568889999999999999999887765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.21  E-value=5.9e-10  Score=107.66  Aligned_cols=186  Identities=13%  Similarity=0.039  Sum_probs=135.0

Q ss_pred             CCCCeEEEEeC-CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE-c-CCCCEEEEEe------
Q 010296          169 EDDSKGFSASK-DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV-S-SDGRYLASGG------  239 (513)
Q Consensus       169 ~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~s~~------  239 (513)
                      +||++|+.+.. ++.|.+.|+.+.+....+.                  ......+..+++ + |+++++++++      
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~------------------ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~  160 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILE------------------IPNAKGIHGLRPQKWPRSNYVFCNGEDETPL  160 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEE------------------CSSCCSEEEEEECCSSBCSEEEEEECSCEES
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEe------------------CCCCCCCcceeeeecCCCcEEEEeccccccc
Confidence            38888887665 5679999999998766330                  112234778888 5 8999998885      


Q ss_pred             ------------CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC-----------------------
Q 010296          240 ------------LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR-----------------------  284 (513)
Q Consensus       240 ------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------  284 (513)
                                  .++.+.++|..+.+.+.++.-.. ....++++|+|+++++++.+.                       
T Consensus       161 ~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~  239 (595)
T 1fwx_A          161 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA  239 (595)
T ss_dssp             SCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred             CCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc
Confidence                        24579999999998887776322 456788999999998877543                       


Q ss_pred             ---------------cEEEEeCCC--Cce-eEEeecccCCeEEEEeeCCCeEEEE--eCCCcEEEEecCCCe--------
Q 010296          285 ---------------TVKIWNAED--RAY-ISTLFGHQSEVLTIDCLRKERVLTV--GRDRSMQLWKVPEES--------  336 (513)
Q Consensus       285 ---------------~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~~--~~d~~i~iwd~~~~~--------  336 (513)
                                     .|.|.|..+  ++. +..+. -.....++.++|||+++.+  ..+.+|.++|+.+..        
T Consensus       240 ~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~  318 (595)
T 1fwx_A          240 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD  318 (595)
T ss_dssp             HHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC
T ss_pred             ceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC
Confidence                           477777776  444 34443 2345678899999975533  358899999998653        


Q ss_pred             ----eeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296          337 ----RLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       337 ----~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~  374 (513)
                          .............++|+++|. +++..-+++|.+|++.+
T Consensus       319 ~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          319 PRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence                223344556788999999996 45777899999999977

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.17  E-value=3.4e-09  Score=107.73  Aligned_cols=263  Identities=13%  Similarity=0.148  Sum_probs=161.1

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC------CCc
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL------DRH  243 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~  243 (513)
                      .+..|++++.|+.|..+|..+++.+..+.....         ..........++    .  .+..+++++.      ++.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~---------~~~~~~~~~~p~----v--~~~~v~v~~~~~~~~~~g~  191 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEG---------QKGSLTITGAPR----V--FKGKVIIGNGGAEYGVRGY  191 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTT---------CCSSCBCCSCCE----E--ETTEEEECCBCTTTCCBCE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcC---------cCcCcccccCcE----E--ECCEEEEEecccccCCCCE
Confidence            456788899999999999999998765411100         000000001111    1  1334555443      689


Q ss_pred             EEEEeCCCcceeeeccCcCC--------------------------------CeEEEEEecCCCeEEEEeCCC-------
Q 010296          244 IHLWDTRIQEHIQAFPGHRG--------------------------------PVSCLTFRQGTSELFSGSFDR-------  284 (513)
Q Consensus       244 i~vwd~~~~~~~~~~~~~~~--------------------------------~v~~~~~~~~~~~l~~~~~dg-------  284 (513)
                      |+.||..+|+.+..+.....                                ....++++|++..|+.++.++       
T Consensus       192 v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~  271 (677)
T 1kb0_A          192 ITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKV  271 (677)
T ss_dssp             EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHH
T ss_pred             EEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCC
Confidence            99999999998766543211                                113578899988888887664       


Q ss_pred             ------------cEEEEeCCCCceeEEeeccc---------CCeEEEEeeCCC----eEEEEeCCCcEEEEecCCCeeeE
Q 010296          285 ------------TVKIWNAEDRAYISTLFGHQ---------SEVLTIDCLRKE----RVLTVGRDRSMQLWKVPEESRLV  339 (513)
Q Consensus       285 ------------~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~----~~~~~~~d~~i~iwd~~~~~~~~  339 (513)
                                  .|..+|..+++.+..+....         .....+....+|    .+++++.+|.|+++|..+++.+.
T Consensus       272 ~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~  351 (677)
T 1kb0_A          272 RSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS  351 (677)
T ss_dssp             HSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             CCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEec
Confidence                        59999999999887765321         112222222355    35678889999999999988763


Q ss_pred             Eec-CC-C----------Ce------------------------eEEEeecCCe-EEEEeC-------------------
Q 010296          340 FRA-PA-S----------SL------------------------ECCCFISNDE-FLSGSD-------------------  363 (513)
Q Consensus       340 ~~~-~~-~----------~v------------------------~~~~~~~~~~-~~~~~~-------------------  363 (513)
                      ... .. .          .+                        ..++++|++. +++...                   
T Consensus       352 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~  431 (677)
T 1kb0_A          352 AKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGP  431 (677)
T ss_dssp             EEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCT
T ss_pred             cccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccc
Confidence            211 10 0          00                        1456777653 444332                   


Q ss_pred             ------------------------CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCC
Q 010296          364 ------------------------DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSS  419 (513)
Q Consensus       364 ------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  419 (513)
                                              .|.|..||+.+++.+..+....+                                 
T Consensus       432 ~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~---------------------------------  478 (677)
T 1kb0_A          432 GKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP---------------------------------  478 (677)
T ss_dssp             TSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS---------------------------------
T ss_pred             cccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCC---------------------------------
Confidence                                    16788888888887776653221                                 


Q ss_pred             CCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCE-EEEEec
Q 010296          420 SAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQF-LIAGVG  487 (513)
Q Consensus       420 ~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-l~~~~~  487 (513)
                           +....++..+.++++++.||.|++||+.++. .+..+.. ++.....-+.|.++|+. +++.++
T Consensus       479 -----~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~-~lw~~~~-~~~~~~~p~~y~~~G~~~v~~~~G  540 (677)
T 1kb0_A          479 -----WNGGTLTTAGNVVFQGTADGRLVAYHAATGE-KLWEAPT-GTGVVAAPSTYMVDGRQYVSVAVG  540 (677)
T ss_dssp             -----CCCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEEC-SSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             -----CcCcceEeCCCEEEEECCCCcEEEEECCCCc-eeeeeeC-CCCcccCCEEEEeCCEEEEEEecc
Confidence                 2334456677888999999999999999983 3333321 22222234566788874 444434

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.16  E-value=8.8e-08  Score=85.71  Aligned_cols=219  Identities=10%  Similarity=-0.002  Sum_probs=136.7

Q ss_pred             ccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEE-eCCCcEEEEeCCCCceeE
Q 010296          221 KHILALAVSSDGRYLASG-GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSG-SFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~  298 (513)
                      ..+..++|++++..|+.+ ...+.|.++++........+.........+++++++..|+.+ ...+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            357899999976555544 456899999987665443333333567899999976666654 456789999987543322


Q ss_pred             EeecccCCeEEEEeeC-CCeEEEEeC---CCcEEEEecCCCeeeEEe-cCCCCeeEEEeecCC-e-EEEEeCCCCEEEEe
Q 010296          299 TLFGHQSEVLTIDCLR-KERVLTVGR---DRSMQLWKVPEESRLVFR-APASSLECCCFISND-E-FLSGSDDGSIELWS  371 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~-~~~~~~~~~---d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~-~-~~~~~~dg~i~iwd  371 (513)
                      .+.........+++.| .+.++.+..   .+.|..+++.......+. ........+++++++ . +++-...+.|.+++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence            2222224678999999 567766554   368888887654433322 334567889999864 5 44666678999999


Q ss_pred             cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      +........+...                                      .....+++. .+.++++....+.|.+++.
T Consensus       196 ~~g~~~~~~~~~~--------------------------------------~~P~gi~~d-~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          196 PAQPGRRKVLEGL--------------------------------------QYPFAVTSY-GKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             TTEEEEEEEEECC--------------------------------------CSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             cCCCceEEEecCC--------------------------------------CCceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence            8754333222110                                      014456654 4445555556689999998


Q ss_pred             CCCCcceeeeeecCcccEEEEEEeecCCC
Q 010296          452 ESETKDIQPLYNLPLVGFVNSLAFAKSGQ  480 (513)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  480 (513)
                      .++ +.+..+.. ........+++.|++-
T Consensus       237 ~~g-~~~~~i~~-g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          237 AIS-KEMDTFHP-HKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTT-EEEEEECC-SSCCCCCCEEEECSCC
T ss_pred             CCC-CceEEEcc-ccccccceeeecCccC
Confidence            877 33333321 1112356788888764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.14  E-value=2.6e-07  Score=96.43  Aligned_cols=282  Identities=12%  Similarity=0.135  Sum_probs=183.3

Q ss_pred             eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC
Q 010296          162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD  241 (513)
Q Consensus       162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  241 (513)
                      |.++...+++.+.+ ++.++-|..|+..++......                  ...+...|.++...+++.+.+ |+.+
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~------------------~~~~~~~i~~i~~d~~g~lwi-gt~~  234 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVI------------------PILGTKQIQAILQQSPTRIWV-ATEG  234 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----------------------CCCEEEEEEEETTEEEE-EEBS
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEec------------------CCCCCCeeEEEEEcCCCCEEE-EECC
Confidence            88898888876444 665555888998776543211                  011245688998888776544 5544


Q ss_pred             CcEEEEeCCCcceeeeccC-------cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec-------ccCCe
Q 010296          242 RHIHLWDTRIQEHIQAFPG-------HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG-------HQSEV  307 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v  307 (513)
                      +-|.+|+..+++.......       ....|.++...+++.+.+ |+.. -|.+|+..++........       ....|
T Consensus       235 ~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i  312 (795)
T 4a2l_A          235 AGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSV  312 (795)
T ss_dssp             SCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCE
T ss_pred             CCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcE
Confidence            4588999877654432211       235699999988876544 4444 589999887654432211       23568


Q ss_pred             EEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEec-------CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEE
Q 010296          308 LTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRA-------PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYI  380 (513)
Q Consensus       308 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  380 (513)
                      .++...+++.+.+++.++.|..|+........+..       ....|.++...++|.+.+|+.++-|..|+..+++....
T Consensus       313 ~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~  392 (795)
T 4a2l_A          313 RSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSY  392 (795)
T ss_dssp             EEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEE
T ss_pred             EEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEE
Confidence            99999999999999998999999876654433321       23468889888899999999998899999877654332


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP  460 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~  460 (513)
                      ....... .                   .         ......|.+++..+++++|..|+.++-|.+|+..++.  +..
T Consensus       393 ~~~~~~~-~-------------------~---------~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~--~~~  441 (795)
T 4a2l_A          393 TLQEDES-A-------------------R---------GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ--VEN  441 (795)
T ss_dssp             CCC-----------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC--EEE
T ss_pred             ecCCCCc-c-------------------c---------CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc--EEE
Confidence            2110000 0                   0         0011238999999998856667776679999987752  222


Q ss_pred             eeec---CcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          461 LYNL---PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       461 ~~~~---~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      +...   .....|.++...++|.+.+.+ . . .|.+|+...
T Consensus       442 ~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~-Gl~~~~~~~  480 (795)
T 4a2l_A          442 FNQRNSQLVNENVYAILPDGEGNLWLGT-L-S-ALVRFNPEQ  480 (795)
T ss_dssp             ECTTTSCCSCSCEEEEEECSSSCEEEEE-S-S-CEEEEETTT
T ss_pred             eecCCCCcCCCeeEEEEECCCCCEEEEe-c-C-ceeEEeCCC
Confidence            2210   124579999999988876665 3 3 466776543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.13  E-value=1.8e-09  Score=100.73  Aligned_cols=231  Identities=11%  Similarity=0.040  Sum_probs=146.7

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeC-----CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          157 KHRQSVTAVALSEDDSKGFSASK-----DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      .|-..+.+|+++++++++++-..     ++.|.+||+.+++.+..+....             ....+...+..++++++
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~-------------~~~~~~~~~~~v~vd~~  130 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP-------------PITLSNSFVNDLAVDLI  130 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT-------------TTSCTTCCCCEEEEETT
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh-------------hhcccccccceEEEecC
Confidence            56778999999999886665433     5789999999888655441100             00122345688999986


Q ss_pred             CCEE-EEEe---CCCcEEEEeCCCcceeeeccCcCCCeE-EEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC
Q 010296          232 GRYL-ASGG---LDRHIHLWDTRIQEHIQAFPGHRGPVS-CLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE  306 (513)
Q Consensus       232 ~~~l-~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  306 (513)
                      +..+ ++..   .++.|.+||+.+++....+.+|..... ...+.+++..+.+.+.++.+..|.              ..
T Consensus       131 ~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~  196 (343)
T 2qe8_A          131 HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LG  196 (343)
T ss_dssp             TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CC
T ss_pred             CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cc
Confidence            5444 5544   578999999998887777765432111 144556777777777788776553              23


Q ss_pred             eEEEEeeCCCe-EEEEeCCC-cEEEEecC---CCe--------eeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296          307 VLTIDCLRKER-VLTVGRDR-SMQLWKVP---EES--------RLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL  372 (513)
Q Consensus       307 v~~~~~~~~~~-~~~~~~d~-~i~iwd~~---~~~--------~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~  372 (513)
                      +..|+++|++. ++++...+ .|..++..   ...        .+....+......+++.++|. +++...++.|.+|+.
T Consensus       197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            57899999985 55655544 55555432   110        011122233556789999987 456667889999998


Q ss_pred             CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      .+++........                                    ...++++++|.+++.++++.+..+.+.+|.
T Consensus       277 ~~G~~~~~~~~~------------------------------------~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          277 ADRAYKLLVTDE------------------------------------KLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             TTTEEEEEEECG------------------------------------GGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             CCCCEEEEEECC------------------------------------ceecCCeeEECCCCcEEEEeCccccccccc
Confidence            556533222210                                    112388999999998888877655554443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.11  E-value=5e-07  Score=94.30  Aligned_cols=284  Identities=7%  Similarity=0.037  Sum_probs=184.7

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ...|.+|...++|. |..|+.++-|.+|+..+....... ...           . ...-....|.++...++|. |..|
T Consensus       309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~-~~~-----------~-~~~l~~~~V~~i~~d~~g~-lWiG  373 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIR-NIP-----------Y-KNSLSDNVVSCIVEDKDKN-LWIG  373 (795)
T ss_dssp             SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEEC-CCT-----------T-SSSCSCSSEEEEEECTTSC-EEEE
T ss_pred             CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEc-CCC-----------C-CCCCCCCeeEEEEECCCCC-EEEE
Confidence            35799999998887 556777777888886554322111 000           0 0011245699999998886 5567


Q ss_pred             eCCCcEEEEeCCCcceeeeccC--------cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee----cccCC
Q 010296          239 GLDRHIHLWDTRIQEHIQAFPG--------HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF----GHQSE  306 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~  306 (513)
                      +.++-|..|+..++........        ....|.+++..+++..|..|+.++.|.+|+..+++......    .....
T Consensus       374 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~  453 (795)
T 4a2l_A          374 TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNEN  453 (795)
T ss_dssp             ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSC
T ss_pred             ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCe
Confidence            7777799999887654432211        23579999998888757778887889999998876443221    13457


Q ss_pred             eEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEec-------CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeE
Q 010296          307 VLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRA-------PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVY  379 (513)
Q Consensus       307 v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  379 (513)
                      |.++...+++.+..++. +.|.+|+..++....+..       ....|.++...++|.+..|+. +-|.+|+..+++.  
T Consensus       454 v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--  529 (795)
T 4a2l_A          454 VYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--  529 (795)
T ss_dssp             EEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--
T ss_pred             eEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--
Confidence            88998888899888887 568999988766544322       235688888889998888877 5688999877654  


Q ss_pred             EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCccee
Q 010296          380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQ  459 (513)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~  459 (513)
                      .+.......                              ......|.++...++|.+.++.. . -|..|+..+.  .+.
T Consensus       530 ~~~~~~~~~------------------------------~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~--~~~  575 (795)
T 4a2l_A          530 QKASILPVS------------------------------NVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDK--QIK  575 (795)
T ss_dssp             EECCCSCSC------------------------------GGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTT--EEE
T ss_pred             EEecCCCCC------------------------------CCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCC--cEE
Confidence            222100000                              11123389999999988666544 3 4788887665  222


Q ss_pred             eeeecC--cccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          460 PLYNLP--LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       460 ~~~~~~--~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .+....  ....|.++...++|.+.+++  .. .|..|+..
T Consensus       576 ~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~-Gl~~~~~~  613 (795)
T 4a2l_A          576 RYNTTNGLPNNVVYGILEDSFGRLWLST--NR-GISCFNPE  613 (795)
T ss_dssp             EECGGGTCSCSCEEEEEECTTSCEEEEE--TT-EEEEEETT
T ss_pred             EeCCCCCCchhheEEEEECCCCCEEEEc--CC-ceEEEcCC
Confidence            222111  23468899999999877666  23 45556543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.11  E-value=3.1e-08  Score=92.41  Aligned_cols=191  Identities=12%  Similarity=0.075  Sum_probs=127.5

Q ss_pred             cCCCeEE-EEeCCCcEEEEeCCCC----ceeEEee------c-ccCCeEEEEeeCCCeEEEEeCC------CcEEEEecC
Q 010296          272 QGTSELF-SGSFDRTVKIWNAEDR----AYISTLF------G-HQSEVLTIDCLRKERVLTVGRD------RSMQLWKVP  333 (513)
Q Consensus       272 ~~~~~l~-~~~~dg~i~iwd~~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~~~~~~d------~~i~iwd~~  333 (513)
                      ++.++|+ ++..++.|+++|+.+.    +.+.++.      . .......+.+.|++.++++..+      +.|.++|..
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence            7777776 4566889999999754    4455552      1 1124466788899955544444      789999999


Q ss_pred             CCeeeEEecCC----CCeeEEEeecCCeEEEEe--------------------CCCCEEEEecCCCCeeEEeecCCCccc
Q 010296          334 EESRLVFRAPA----SSLECCCFISNDEFLSGS--------------------DDGSIELWSLLRKKPVYIVKNAHPLLD  389 (513)
Q Consensus       334 ~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~  389 (513)
                      +...+......    .-...+.|+|++.++..+                    ...+|.+||+.+++.+.++.....   
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~---  249 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE---  249 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT---
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC---
Confidence            88877443221    223347789988644333                    378999999999888887764311   


Q ss_pred             CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE--ecCCCEEEEecC------CCcEEEEEeCCCCcceeee
Q 010296          390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV--CGGSDLAASGAG------NGSVRLWAIESETKDIQPL  461 (513)
Q Consensus       390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~g~~------dg~v~vwd~~~~~~~~~~~  461 (513)
                                                      ......+.|  +|+++++++++.      +++|.+|....+.  +...
T Consensus       250 --------------------------------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~--~~~~  295 (462)
T 2ece_A          250 --------------------------------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK--WNAE  295 (462)
T ss_dssp             --------------------------------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE--EEEE
T ss_pred             --------------------------------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc--eeEE
Confidence                                            111445555  999998888774      5688887765431  1111


Q ss_pred             ee--cCc-----------------ccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          462 YN--LPL-----------------VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       462 ~~--~~~-----------------~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      ..  ++.                 ...+..|.+||||++|.++.-..+.|.++++..
T Consensus       296 ~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          296 KVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             EEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             EEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            11  000                 234788999999999999988889999999863

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.08  E-value=6e-08  Score=85.01  Aligned_cols=209  Identities=9%  Similarity=-0.034  Sum_probs=136.2

Q ss_pred             ceeeeccCcCC--CeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEEeecccC-CeEEEEeeCCCeEE-EEeCCCc
Q 010296          253 EHIQAFPGHRG--PVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYISTLFGHQS-EVLTIDCLRKERVL-TVGRDRS  326 (513)
Q Consensus       253 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~-~~~~d~~  326 (513)
                      +.+.++. |..  ....+.|++++.++++.+.  ++.|+++|+.+++.+..+.-... ....+++.. ++++ +.-.++.
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~   87 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSE
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCE
Confidence            4555664 443  3589999998643444433  57999999999998887653222 233555553 4555 4446899


Q ss_pred             EEEEecCCCeeeEEecCC-CCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccc
Q 010296          327 MQLWKVPEESRLVFRAPA-SSLECCCFISND-EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNG  404 (513)
Q Consensus       327 i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  404 (513)
                      +.++|..+.+.+...... ..-  ..+++++ +++++..++.|.++|..+.+.+..+......                 
T Consensus        88 v~viD~~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~-----------------  148 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG-----------------  148 (266)
T ss_dssp             EEEEETTTTEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT-----------------
T ss_pred             EEEEECCCCcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC-----------------
Confidence            999999988776433222 222  3344555 4555557889999999999988887643210                 


Q ss_pred             cCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec-----------CcccEEEEE
Q 010296          405 HSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL-----------PLVGFVNSL  473 (513)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-----------~~~~~v~~v  473 (513)
                                     .....++.+.|. +|.+.+....++.|.+.|..++ +.+..+...           +.....+.|
T Consensus       149 ---------------~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg-~V~~~I~~~g~~~~~~~~~~~~~~v~nGI  211 (266)
T 2iwa_A          149 ---------------HRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG-TLLGWILLPNLRKKLIDEGFRDIDVLNGI  211 (266)
T ss_dssp             ---------------EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC-CEEEEEECHHHHHHHHHTTCTTCCCEEEE
T ss_pred             ---------------cccccceeEEEE-CCEEEEecCCCCeEEEEECCCC-cEEEEEECCCcccccccccccccCceEEE
Confidence                           000116678887 6766665556789999999988 333333211           011357899


Q ss_pred             EeecCCCEEEEEecCCCcccccccCC
Q 010296          474 AFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       474 ~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      +|+|+++.|++++...++|..-++.+
T Consensus       212 a~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          212 AWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEcCCCCEEEEECCCCCeEEEEEEec
Confidence            99999998888867777777666544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.07  E-value=3.5e-07  Score=81.72  Aligned_cols=203  Identities=8%  Similarity=-0.013  Sum_probs=132.5

Q ss_pred             CCeEEEEECCCCCeEEE-EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE-
Q 010296          160 QSVTAVALSEDDSKGFS-ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS-  237 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-  237 (513)
                      ..+.+++|++++..|+. -...+.|.++++.+......+                   .........+++++++..|+. 
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-------------------~~~~~~p~~ia~d~~~~~lyv~   96 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-------------------RQDLGSPEGIALDHLGRTIFWT   96 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-------------------CTTCCCEEEEEEETTTTEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-------------------ECCCCCccEEEEEecCCeEEEE
Confidence            45789999997666664 455789999998765432211                   111235789999997655554 


Q ss_pred             EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC---CCcEEEEeCCCCceeEEe-ecccCCeEEEEee
Q 010296          238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---DRTVKIWNAEDRAYISTL-FGHQSEVLTIDCL  313 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~  313 (513)
                      -...+.|.++++........+.........++++|++..|+.+..   .+.|..+++.... ...+ .........+++.
T Consensus        97 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d  175 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFD  175 (267)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEE
T ss_pred             ECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEc
Confidence            445688999998654322222222246789999997777665554   3688888876433 2222 2233457889999


Q ss_pred             CC-CeEEEEe-CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          314 RK-ERVLTVG-RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       314 ~~-~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      ++ +.++.+. ..+.|.++++.......+.........+++. .+. +++....+.|.+++..+++.+..+..
T Consensus       176 ~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          176 AFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             CCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence            86 4665444 5688999999765444333333445667665 455 44555678999999999988888753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.06  E-value=6.4e-08  Score=84.83  Aligned_cols=192  Identities=11%  Similarity=0.024  Sum_probs=135.2

Q ss_pred             CeEEEEECCCCCeEEEEeC--CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          161 SVTAVALSEDDSKGFSASK--DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ....+.|+|++.++++.+.  ++.|.++|+.+++.+..+.                 +..+ .....+++.  +..|+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------l~~~-~fgeGi~~~--g~~lyv~   81 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-----------------MDDS-YFGEGLTLL--NEKLYQV   81 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-----------------CCTT-CCEEEEEEE--TTEEEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-----------------cCCC-cceEEEEEe--CCEEEEE
Confidence            3689999998754445443  5899999999999887651                 0111 112345555  4455554


Q ss_pred             e-CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeeccc-----CCeEEEEe
Q 010296          239 G-LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQ-----SEVLTIDC  312 (513)
Q Consensus       239 ~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~  312 (513)
                      . .++.+.++|..+.+.+.++.....  ....++++++.|+++..++.|.++|..+.+.+..+.-..     ..++.+.|
T Consensus        82 t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~  159 (266)
T 2iwa_A           82 VWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY  159 (266)
T ss_dssp             ETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence            4 578999999999999888863311  124466788888877778999999999988877765322     13667888


Q ss_pred             eCCCeEEEEe-CCCcEEEEecCCCeeeEEecC--------------CCCeeEEEeecCCe--EEEEeCCCCEEEEecCCC
Q 010296          313 LRKERVLTVG-RDRSMQLWKVPEESRLVFRAP--------------ASSLECCCFISNDE--FLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       313 ~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~--------------~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~  375 (513)
                      . ++.+++.. .++.|.+.|..+++.......              ......++++|++.  |+++...+.|.+.++...
T Consensus       160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            7 67777555 578999999999887632211              13567999999874  667878899998887654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.02  E-value=6.4e-08  Score=98.32  Aligned_cols=312  Identities=10%  Similarity=0.077  Sum_probs=171.0

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR  250 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~  250 (513)
                      +..|++++.++.|.-+|..+++.+..+............     ......   ..+++  .+..|++++.++.|..+|..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~-----~~~~~~---~~~~~--~~~~v~v~~~dg~l~alD~~  135 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTS-----CCDAVN---RGVAL--WGDKVYVGTLDGRLIALDAK  135 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGC-----TTCSCC---CCCEE--EBTEEEEECTTSEEEEEETT
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccc-----cccCCc---cceEE--ECCEEEEEcCCCEEEEEECC
Confidence            556778888999999999999988765322111000000     000000   11222  25578888889999999999


Q ss_pred             CcceeeeccCcC----CCeEE-EEEecCCCeEEEEeC------CCcEEEEeCCCCceeEEeecccC--------------
Q 010296          251 IQEHIQAFPGHR----GPVSC-LTFRQGTSELFSGSF------DRTVKIWNAEDRAYISTLFGHQS--------------  305 (513)
Q Consensus       251 ~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~--------------  305 (513)
                      +|+.+..+....    ..+.+ ..+. + ..++++..      +|.|+.+|..+++.+..+.....              
T Consensus       136 tG~~~W~~~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~  213 (668)
T 1kv9_A          136 TGKAIWSQQTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREA  213 (668)
T ss_dssp             TCCEEEEEECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred             CCCEeeeeccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccc
Confidence            999886665321    11111 1111 3 34555543      58999999999999887642110              


Q ss_pred             -----------------CeEEEEeeCC-CeEEEEeCCC-------------------cEEEEecCCCeeeE-Eec--CC-
Q 010296          306 -----------------EVLTIDCLRK-ERVLTVGRDR-------------------SMQLWKVPEESRLV-FRA--PA-  344 (513)
Q Consensus       306 -----------------~v~~~~~~~~-~~~~~~~~d~-------------------~i~iwd~~~~~~~~-~~~--~~-  344 (513)
                                       ....+++.+. +.++++..++                   .|..+|..+++.+. +..  +. 
T Consensus       214 ~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~  293 (668)
T 1kv9_A          214 AKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDS  293 (668)
T ss_dssp             HTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC
T ss_pred             cccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcc
Confidence                             0123566664 4555666555                   49999999988773 222  11 


Q ss_pred             ------CCeeEEEeecCCe----EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCccc-CcCccccccCC-CCCCC
Q 010296          345 ------SSLECCCFISNDE----FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQ-DEGKISNGHSE-NGNLN  412 (513)
Q Consensus       345 ------~~v~~~~~~~~~~----~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~-~~~~~  412 (513)
                            .+.....+..++.    ++.++.+|.++++|..+++.+............  .+.. ....+...... .+. .
T Consensus       294 wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~--~~d~~~g~p~~~~~~~~~~~-~  370 (668)
T 1kv9_A          294 WDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE--KVDLATGRPVEAPGVRYEKE-P  370 (668)
T ss_dssp             SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE--EECTTTCCEEECTTTTCSSS-C
T ss_pred             ccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccc--ccccccCCccccccccccCC-e
Confidence                  2222223334553    778999999999999999998766543210000  0000 00000000000 000 0


Q ss_pred             CCCcCCCCCcceEEEEEEecCCCEEEE------------------------------------ecCCCcEEEEEeCCCCc
Q 010296          413 PGSYHSSSAYSWVSSVTVCGGSDLAAS------------------------------------GAGNGSVRLWAIESETK  456 (513)
Q Consensus       413 ~~~~~~~~~~~~i~~~~~s~~~~~l~~------------------------------------g~~dg~v~vwd~~~~~~  456 (513)
                      ...+........-..++++|+..++++                                    ...+|.|..||+.+++.
T Consensus       371 ~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~  450 (668)
T 1kv9_A          371 IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA  450 (668)
T ss_dssp             EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE
T ss_pred             eEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE
Confidence            000000000000123556665555443                                    12348899999999833


Q ss_pred             ceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          457 DIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       457 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      ..+.    +...++....+...+.+++++ +.||.|+.||...+..
T Consensus       451 ~W~~----~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          451 AWKV----PYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADKGEA  491 (668)
T ss_dssp             EEEE----EESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCE
T ss_pred             EEEc----cCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhcChh
Confidence            2222    222233334556678888888 8899999999877654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=1.8e-06  Score=90.00  Aligned_cols=295  Identities=11%  Similarity=0.034  Sum_probs=182.3

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ...|.+|...++|. |..|+..+-|.+++..+.............+.     .+..........|.+|...++|. |..|
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~-----~~~~~~~l~~~~v~~i~~D~~g~-lWig  329 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIR-----EGDNNYSLSNASARYIFQDSFNN-IWIG  329 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEEC-----BCSSTTSBSSSCEEEEEECSSCC-EEEE
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeecccccccc-----CCCCCCCCCCCeEEEEEEeCCCC-EEEE
Confidence            45699999988876 55566645678889876653321100000000     00000122356799999998886 5667


Q ss_pred             eCCCcEEEEeCCCcceeeec---------cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe---ecccCC
Q 010296          239 GLDRHIHLWDTRIQEHIQAF---------PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL---FGHQSE  306 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~  306 (513)
                      +.++-|..|+..+.......         ......|.++...+++. |..|+.++-|.+|+..++......   ......
T Consensus       330 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~  408 (781)
T 3v9f_A          330 TWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNS  408 (781)
T ss_dssp             EBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSB
T ss_pred             ecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcc
Confidence            76777899987755432211         11235689998887765 556666677999998765432211   123456


Q ss_pred             eEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEec---CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          307 VLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRA---PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       307 v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      |.++...+++.+.+++.++.|..++..++....+..   ....|.++...+++.+..|+. +-|.+|+..+++.......
T Consensus       409 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~  487 (781)
T 3v9f_A          409 VLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDT  487 (781)
T ss_dssp             EEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECT
T ss_pred             eEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccC
Confidence            889988888999999888889999988776554432   346788888888898888887 5688999877654332211


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                      ...                                ......|.++...++|.+.+.....| |..|+..+.  .+..+..
T Consensus       488 ~~~--------------------------------~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~--~~~~~~~  532 (781)
T 3v9f_A          488 SNS--------------------------------QLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQ--LVRKFNQ  532 (781)
T ss_dssp             TTS--------------------------------SCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCC--EEEEECT
T ss_pred             ccc--------------------------------ccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCC--eEEEccC
Confidence            100                                00113389999999887666544355 777876654  2222221


Q ss_pred             c--CcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          464 L--PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       464 ~--~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      .  .....|.++...++|.+.+++ . .|.|..|+...
T Consensus       533 ~~~l~~~~i~~i~~d~~g~lWi~T-~-~Glv~~~d~~~  568 (781)
T 3v9f_A          533 YEGFCSNTINQIYRSSKGQMWLAT-G-EGLVCFPSARN  568 (781)
T ss_dssp             TTTCSCSCEEEEEECTTSCEEEEE-T-TEEEEESCTTT
T ss_pred             CCCCCCCeeEEEEECCCCCEEEEE-C-CCceEEECCCC
Confidence            1  124578999999999876665 3 55547776544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.97  E-value=8.1e-08  Score=97.57  Aligned_cols=152  Identities=8%  Similarity=0.096  Sum_probs=98.3

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC------CCcE
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL------DRHI  244 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i  244 (513)
                      +..|++++.|+.|..+|..+++.+..+.....          .........++.    . ++ .++++..      +|.|
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~----------~~~~~~~~~P~v----~-~~-~v~vg~~~~~~~~~g~v  180 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP----------AKPYSITGAPRV----V-KG-KVIIGNGGAEYGVRGFV  180 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCT----------TSSCBCCSCCEE----E-TT-EEEECCBCTTTCCBCEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCC----------CCcceecCCCEE----E-CC-EEEEeCCCCCcCCCCEE
Confidence            46788889999999999999998765411100          000001111111    1 34 4444432      5899


Q ss_pred             EEEeCCCcceeeeccCc-------------------------------CCCeEEEEEecCCCeEEEEeCCC---------
Q 010296          245 HLWDTRIQEHIQAFPGH-------------------------------RGPVSCLTFRQGTSELFSGSFDR---------  284 (513)
Q Consensus       245 ~vwd~~~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~~~l~~~~~dg---------  284 (513)
                      +.+|..+|+.+..+...                               ......+++.|....++.++.++         
T Consensus       181 ~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~  260 (668)
T 1kv9_A          181 SAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRS  260 (668)
T ss_dssp             EEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHS
T ss_pred             EEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCC
Confidence            99999999987665421                               00112468888888888887766         


Q ss_pred             ----------cEEEEeCCCCceeEEeecc--c-------CCeEEEEeeCCCe----EEEEeCCCcEEEEecCCCeee
Q 010296          285 ----------TVKIWNAEDRAYISTLFGH--Q-------SEVLTIDCLRKER----VLTVGRDRSMQLWKVPEESRL  338 (513)
Q Consensus       285 ----------~i~iwd~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~----~~~~~~d~~i~iwd~~~~~~~  338 (513)
                                .|..+|..+++.+..+...  .       .++....+..++.    ++.++.+|.++++|..+++.+
T Consensus       261 ~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence                      3999999999998877532  1       2222223333553    668889999999999988766

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.97  E-value=6.4e-07  Score=82.50  Aligned_cols=255  Identities=9%  Similarity=0.031  Sum_probs=148.7

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChh-h-hccCCCCCCCCCCCCCcccEEEEEEcC-CCCEEE
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEE-V-LKSHGAKDPQGRATKQSKHILALAVSS-DGRYLA  236 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  236 (513)
                      ....+++|++++++++++..++.|..|+..++........... . ....+..  ..........+..|++.+ +++ |+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~p~gi~~~~~~g~-l~   95 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENST--DAEKRPLCGRTYDISYNLQNNQ-LY   95 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCC--CGGGHHHHCCEEEEEEETTTTE-EE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEeccccccccccccccc--chhccccCCCCceEEEcCCCCc-EE
Confidence            3467789999999888898999999999876543211100000 0 0000000  000001123578999998 555 55


Q ss_pred             EEeCCCcEEEEeCCCcceeeec---cC-cCCCeEEEEEec-CCCeEEEEeC-----------------CCcEEEEeCCCC
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAF---PG-HRGPVSCLTFRQ-GTSELFSGSF-----------------DRTVKIWNAEDR  294 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~---~~-~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~~  294 (513)
                      ++...+.|.+++..++......   .+ .......+++.+ +|+..++-..                 .+.|..||..++
T Consensus        96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            5544555888987765432111   11 123578899999 8876665432                 367889998776


Q ss_pred             ceeEEeecccCCeEEEEeeCCCe-EEEE-eCCCcEEEEecCCC---eeeEEecCCCCeeEEEeecCCeEEEEeC------
Q 010296          295 AYISTLFGHQSEVLTIDCLRKER-VLTV-GRDRSMQLWKVPEE---SRLVFRAPASSLECCCFISNDEFLSGSD------  363 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~-~~d~~i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~------  363 (513)
                      +...... .......+++++++. ++++ ...+.|.+|++...   ....+..... ...+++.++|.+.++..      
T Consensus       176 ~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          176 ETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence            5433222 233456799999875 5554 45688999998752   2222222223 77889999987554443      


Q ss_pred             -----CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE
Q 010296          364 -----DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA  438 (513)
Q Consensus       364 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  438 (513)
                           .+.|..++. .++.+..+......                                 ....++++++ .++++++
T Consensus       254 ~~~~~~~~v~~~d~-~G~~~~~~~~~~g~---------------------------------~~~~~~~~~~-~~g~L~v  298 (322)
T 2fp8_A          254 MHGRVDPKGIKFDE-FGNILEVIPLPPPF---------------------------------AGEHFEQIQE-HDGLLYI  298 (322)
T ss_dssp             TTSCEEEEEEEECT-TSCEEEEEECCTTT---------------------------------TTSCCCEEEE-ETTEEEE
T ss_pred             ccCCCccEEEEECC-CCCEEEEEECCCCC---------------------------------ccccceEEEE-eCCEEEE
Confidence                 356788876 46666655432110                                 0112566666 4666666


Q ss_pred             EecCCCcEEEEEeCCC
Q 010296          439 SGAGNGSVRLWAIESE  454 (513)
Q Consensus       439 ~g~~dg~v~vwd~~~~  454 (513)
                      +....+.|.++++...
T Consensus       299 ~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          299 GTLFHGSVGILVYDKK  314 (322)
T ss_dssp             ECSSCSEEEEEEC---
T ss_pred             eecCCCceEEEecccc
Confidence            6667888999988654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.94  E-value=2.1e-06  Score=89.47  Aligned_cols=285  Identities=9%  Similarity=0.066  Sum_probs=180.0

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ...|.+|...++|. |..|+.++-|..|+..+...........        ...  ........|.++...++|. |..|
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~--------~~~--~~~l~~~~v~~i~~d~~g~-lWig  379 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPT--------QMN--ESSLSNKVVSSVCDDGQGK-LWIG  379 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC------------CCC--SSCCSSSCEEEEEECTTSC-EEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcc--------ccc--cCCCCCcceEEEEEcCCCC-EEEE
Confidence            46799999999886 6667767778888877654332110000        000  0011245699999988776 4566


Q ss_pred             eCCCcEEEEeCCCcceeeec---cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee--cccCCeEEEEee
Q 010296          239 GLDRHIHLWDTRIQEHIQAF---PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF--GHQSEVLTIDCL  313 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~  313 (513)
                      +.++-|.+|+..++......   ......|.++...+++. |..|+.++.|..++..+++......  .....|.++...
T Consensus       380 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d  458 (781)
T 3v9f_A          380 TDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED  458 (781)
T ss_dssp             EBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC
T ss_pred             eCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC
Confidence            65666899998765433211   12345688998887765 5556776779999987765433221  134578899888


Q ss_pred             CCCeEEEEeCCCcEEEEecCCCeeeEEecC------CCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296          314 RKERVLTVGRDRSMQLWKVPEESRLVFRAP------ASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPL  387 (513)
Q Consensus       314 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (513)
                      +++.+..++. +.|.+|+..++....+...      ...|.++...++|.+..|+..+-|..|+..+++.. .+....  
T Consensus       459 ~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~--  534 (781)
T 3v9f_A          459 KNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVR-KFNQYE--  534 (781)
T ss_dssp             TTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEE-EECTTT--
T ss_pred             CCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEE-EccCCC--
Confidence            8899888887 6689999887655443321      35688888889999888887656888887665432 222111  


Q ss_pred             ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC--
Q 010296          388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP--  465 (513)
Q Consensus       388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~--  465 (513)
                                                     ......|.++...++|.+.++.. .|.|..|+..+.  .+..+....  
T Consensus       535 -------------------------------~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~--~~~~~~~~~gl  580 (781)
T 3v9f_A          535 -------------------------------GFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF--DYQVFQRKEGL  580 (781)
T ss_dssp             -------------------------------TCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC--CCEEECGGGTC
T ss_pred             -------------------------------CCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC--cEEEccccCCC
Confidence                                           11122389999999887666554 675588887665  223222111  


Q ss_pred             cccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          466 LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       466 ~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      ....|.++...++|.+.+++  ..| |..++.
T Consensus       581 ~~~~i~~i~~d~~g~lW~~t--~~G-l~~~~~  609 (781)
T 3v9f_A          581 PNTHIRAISEDKNGNIWAST--NTG-ISCYIT  609 (781)
T ss_dssp             SCCCCCEEEECSSSCEEEEC--SSC-EEEEET
T ss_pred             CCceEEEEEECCCCCEEEEc--CCc-eEEEEC
Confidence            13457888888888866654  344 444544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.91  E-value=8e-07  Score=88.44  Aligned_cols=156  Identities=15%  Similarity=0.089  Sum_probs=93.2

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC-EEEEEe------CCCc
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR-YLASGG------LDRH  243 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~------~dg~  243 (513)
                      +..|+.++.++.|.-+|..+++.+..........          .......++.. .=..+++ .+++++      .++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~----------~~~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~  185 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGA----------GYTMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGR  185 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGG----------TCBCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCc----------CcccccCCEEe-CCCcCCcEEEEEeccccccCCCCE
Confidence            4578888899999999999999876441110000          00001112211 0001233 555554      3789


Q ss_pred             EEEEeCCCcceeeeccCcCCC-----------------------------------------eEEEEEecCCCeEEEEeC
Q 010296          244 IHLWDTRIQEHIQAFPGHRGP-----------------------------------------VSCLTFRQGTSELFSGSF  282 (513)
Q Consensus       244 i~vwd~~~~~~~~~~~~~~~~-----------------------------------------v~~~~~~~~~~~l~~~~~  282 (513)
                      |+.+|..+|+.+-........                                         -..+++.|...+++.+..
T Consensus       186 v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~g  265 (582)
T 1flg_A          186 LFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAG  265 (582)
T ss_dssp             EEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEEC
T ss_pred             EEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCC
Confidence            999999999876554321000                                         013566777777776653


Q ss_pred             --------------------C----CcEEEEeCCCCceeEEeec--cc--------CCeEEEEee-CCC----eEEEEeC
Q 010296          283 --------------------D----RTVKIWNAEDRAYISTLFG--HQ--------SEVLTIDCL-RKE----RVLTVGR  323 (513)
Q Consensus       283 --------------------d----g~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~----~~~~~~~  323 (513)
                                          |    +.|..+|..+++.+..+..  |.        .++. +... .++    .++.++.
T Consensus       266 n~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~  344 (582)
T 1flg_A          266 NPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADR  344 (582)
T ss_dssp             CBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECT
T ss_pred             CCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECC
Confidence                                2    5899999999999887643  21        1121 1221 345    3557889


Q ss_pred             CCcEEEEecCCCeee
Q 010296          324 DRSMQLWKVPEESRL  338 (513)
Q Consensus       324 d~~i~iwd~~~~~~~  338 (513)
                      +|.++++|..+++.+
T Consensus       345 ~G~l~~lD~~tG~~l  359 (582)
T 1flg_A          345 NGFFYVVDRSNGKLQ  359 (582)
T ss_dssp             TSEEEEEETTTCCEE
T ss_pred             CceEEEEECCCCCEe
Confidence            999999999888766

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.90  E-value=9.4e-07  Score=76.44  Aligned_cols=195  Identities=10%  Similarity=0.089  Sum_probs=126.4

Q ss_pred             ceeeeccCcCCC--eEEEEEecCCCeEEEEeCCC--cEEEEeCCCCceeEEeecccCCeE--EEEeeCCCeEE-EEeCCC
Q 010296          253 EHIQAFPGHRGP--VSCLTFRQGTSELFSGSFDR--TVKIWNAEDRAYISTLFGHQSEVL--TIDCLRKERVL-TVGRDR  325 (513)
Q Consensus       253 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~-~~~~d~  325 (513)
                      +.+.+++ |...  ...+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+.... ...  .++... ++++ +.-.++
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g-~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWK-DKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEET-TEEEEEESSSS
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeC-CEEEEEEeeCC
Confidence            3455564 5443  4788998 565555666665  89999999999988876433 333  345443 4555 445689


Q ss_pred             cEEEEecCCCeeeEEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccc
Q 010296          326 SMQLWKVPEESRLVFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNG  404 (513)
Q Consensus       326 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  404 (513)
                      .+.+||..+.+.+........-..++  +++ .++.+..++.|.++|..+.+.+..+......                 
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g-----------------  168 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG-----------------  168 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT-----------------
T ss_pred             EEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC-----------------
Confidence            99999999888774333333333444  344 4665555788999999999998887642110                 


Q ss_pred             cCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec----------CcccEEEEEE
Q 010296          405 HSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL----------PLVGFVNSLA  474 (513)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~----------~~~~~v~~v~  474 (513)
                                     .....++.+.|. +|++.+..-.++.|.+.|..++ +.+..+...          +.....+.||
T Consensus       169 ---------------~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA  231 (262)
T 3nol_A          169 ---------------EELPELNELEWV-DGEIFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIA  231 (262)
T ss_dssp             ---------------EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEE
T ss_pred             ---------------ccccccceeEEE-CCEEEEEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEE
Confidence                           000115567776 6766665556789999999888 333333221          1124679999


Q ss_pred             eecCCCEEEEEecC
Q 010296          475 FAKSGQFLIAGVGQ  488 (513)
Q Consensus       475 ~sp~~~~l~~~~~~  488 (513)
                      |+|+++.|+++ |.
T Consensus       232 ~dp~~~~lfVT-GK  244 (262)
T 3nol_A          232 WDKEHHRLFVT-GK  244 (262)
T ss_dssp             EETTTTEEEEE-ET
T ss_pred             EcCCCCEEEEE-CC
Confidence            99998888877 44

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.88  E-value=5.3e-07  Score=77.92  Aligned_cols=194  Identities=10%  Similarity=0.023  Sum_probs=126.8

Q ss_pred             ceeeeccCcCC--CeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE--EEEeeCCCeEEEEeCCCcEE
Q 010296          253 EHIQAFPGHRG--PVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL--TIDCLRKERVLTVGRDRSMQ  328 (513)
Q Consensus       253 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~d~~i~  328 (513)
                      +.+..++ |..  ....+.|+. +.++.+.+.+|.|+++|+.+++.+..+  -.....  .+++..+..+++.-.++.+.
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred             EEEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEE
Confidence            4455554 433  347888874 455667788889999999999988877  223333  35555443444555789999


Q ss_pred             EEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCC
Q 010296          329 LWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSEN  408 (513)
Q Consensus       329 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  408 (513)
                      +||..+.+.+........-..+++. .+.|+.+..++.|.++|..+.+.+..+.....                      
T Consensus       120 V~D~~Tl~~~~ti~~~~eGwGLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~----------------------  176 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGEGWGLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR----------------------  176 (268)
T ss_dssp             EEETTTTEEEEEEECSSCCCCEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEECEET----------------------
T ss_pred             EEECCcCcEEEEEeCCCceeEEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC----------------------
Confidence            9999998877433333333445532 34566666789999999999999888764221                      


Q ss_pred             CCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec-----------CcccEEEEEEeec
Q 010296          409 GNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL-----------PLVGFVNSLAFAK  477 (513)
Q Consensus       409 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-----------~~~~~v~~v~~sp  477 (513)
                                ......++.+.|. +|++.+..-..+.|.+.|..++ +.+..+...           ......+.|||+|
T Consensus       177 ----------g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp  244 (268)
T 3nok_A          177 ----------GQPVELINELECA-NGVIYANIWHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP  244 (268)
T ss_dssp             ----------TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred             ----------CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence                      0011125677776 6766655556789999999888 333332211           1224679999999


Q ss_pred             CCCEEEEE
Q 010296          478 SGQFLIAG  485 (513)
Q Consensus       478 ~~~~l~~~  485 (513)
                      +++.|+++
T Consensus       245 ~~~rlfVT  252 (268)
T 3nok_A          245 GSGRIFMT  252 (268)
T ss_dssp             TTCCEEEE
T ss_pred             CCCEEEEe
Confidence            87777666

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.88  E-value=4.3e-07  Score=83.68  Aligned_cols=234  Identities=7%  Similarity=-0.020  Sum_probs=142.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeec-c------------------CcCCCeEEEEEecCCCeEEEEeCC
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF-P------------------GHRGPVSCLTFRQGTSELFSGSFD  283 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~------------------~~~~~v~~~~~~~~~~~l~~~~~d  283 (513)
                      ..+++|.+++++++++..++.|..|+..++...... .                  .....+..+++.++...|+.+...
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~  100 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY  100 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence            556889999987888888999999998765432111 0                  012357899999833456666555


Q ss_pred             CcEEEEeCCCCceeEEeec-----ccCCeEEEEeeC-CCeEEEEeC------------------CCcEEEEecCCCeeeE
Q 010296          284 RTVKIWNAEDRAYISTLFG-----HQSEVLTIDCLR-KERVLTVGR------------------DRSMQLWKVPEESRLV  339 (513)
Q Consensus       284 g~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~~~------------------d~~i~iwd~~~~~~~~  339 (513)
                      +.|..+|..++.. ..+..     .......+++.+ ++.++++..                  .+.|..|+..++....
T Consensus       101 ~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  179 (322)
T 2fp8_A          101 YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL  179 (322)
T ss_dssp             TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred             CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence            6688999876542 22211     113467899999 888776653                  2678888887665543


Q ss_pred             EecCCCCeeEEEeecCCe-EE-EEeCCCCEEEEecCCCC--eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCC
Q 010296          340 FRAPASSLECCCFISNDE-FL-SGSDDGSIELWSLLRKK--PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGS  415 (513)
Q Consensus       340 ~~~~~~~v~~~~~~~~~~-~~-~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  415 (513)
                      ..........+++++++. ++ +-...+.|.+|++....  ....+.. .                              
T Consensus       180 ~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~------------------------------  228 (322)
T 2fp8_A          180 LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-I------------------------------  228 (322)
T ss_dssp             EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-C------------------------------
T ss_pred             eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-C------------------------------
Confidence            332234456789999985 44 44566889999987532  1111110 0                              


Q ss_pred             cCCCCCcceEEEEEEecCCCEEEEecC----------CCcEEEEEeCCCCcceeeeeecCc--ccEEEEEEeecCCCEEE
Q 010296          416 YHSSSAYSWVSSVTVCGGSDLAASGAG----------NGSVRLWAIESETKDIQPLYNLPL--VGFVNSLAFAKSGQFLI  483 (513)
Q Consensus       416 ~~~~~~~~~i~~~~~s~~~~~l~~g~~----------dg~v~vwd~~~~~~~~~~~~~~~~--~~~v~~v~~sp~~~~l~  483 (513)
                         .   . ...+++.++|++.++...          .+.|..++.. + ..+..+.....  ...++++++ .++. |+
T Consensus       229 ---~---g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G-~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~  297 (322)
T 2fp8_A          229 ---P---N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-G-NILEVIPLPPPFAGEHFEQIQE-HDGL-LY  297 (322)
T ss_dssp             ---S---S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-S-CEEEEEECCTTTTTSCCCEEEE-ETTE-EE
T ss_pred             ---C---C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-C-CEEEEEECCCCCccccceEEEE-eCCE-EE
Confidence               1   1 567889999987666544          3557777653 2 33333332110  234666666 3554 55


Q ss_pred             EEecCCCcccccccCC
Q 010296          484 AGVGQEPRLGRWGHLP  499 (513)
Q Consensus       484 ~~~~~dg~v~~W~~~~  499 (513)
                      ++....+.|.+++...
T Consensus       298 v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          298 IGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EECSSCSEEEEEEC--
T ss_pred             EeecCCCceEEEeccc
Confidence            5546777888887643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.87  E-value=3.5e-07  Score=79.13  Aligned_cols=181  Identities=10%  Similarity=0.082  Sum_probs=122.4

Q ss_pred             ccCCC--eEEEEECCCCCeEEEEeCCc--eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          157 KHRQS--VTAVALSEDDSKGFSASKDG--SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       157 ~h~~~--V~~~~~s~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      .|...  ...|.|+ ++.++.+.+.+|  .|+++|+.+++.+..+..                    ..........+.+
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--------------------~~~~FgeGit~~g   96 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--------------------GKRYFGEGISDWK   96 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--------------------CTTCCEEEEEEET
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--------------------CCccceeEEEEeC
Confidence            45433  4889998 666666777765  899999999998876510                    1112222222235


Q ss_pred             CEEEEEe-CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeeccc-----CC
Q 010296          233 RYLASGG-LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQ-----SE  306 (513)
Q Consensus       233 ~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~  306 (513)
                      ..|.... .++.+.+||..+.+.+.++....   ....+++++..|+.+...+.|.++|..+.+.+..+.-..     ..
T Consensus        97 ~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~  173 (262)
T 3nol_A           97 DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPE  173 (262)
T ss_dssp             TEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCC
T ss_pred             CEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccc
Confidence            5555554 47899999999999998887432   223444677878877667889999999998887765321     23


Q ss_pred             eEEEEeeCCCeEEEEe-CCCcEEEEecCCCeeeEEecC-------------CCCeeEEEeecCC-eEEEEe
Q 010296          307 VLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAP-------------ASSLECCCFISND-EFLSGS  362 (513)
Q Consensus       307 v~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~-------------~~~v~~~~~~~~~-~~~~~~  362 (513)
                      ++.+.|. ++++++.. .++.|.+.|..+++.......             ......++++|++ +|++.+
T Consensus       174 lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          174 LNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             cceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            4567776 67777666 588999999999887632211             2356789999976 444443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.86  E-value=4.2e-07  Score=90.37  Aligned_cols=151  Identities=11%  Similarity=0.041  Sum_probs=92.9

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC------CCcE
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL------DRHI  244 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i  244 (513)
                      +..|++++.|+.|..+|..+++.+..+.......          .......++.    . ++ .+++++.      ++.|
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~----------~~~~~~~P~v----~-~g-~v~vg~~~~~~~~~g~v  178 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV----------GSTLTQAPFV----A-KD-TVLMGCSGAELGVRGAV  178 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG----------TCBCCSCCEE----E-TT-EEEEECBCGGGTCCCEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCc----------cceeccCCEE----E-CC-EEEEEecCCccCCCCEE
Confidence            5678888889999999999998876541110000          0000111111    1 34 4555554      7899


Q ss_pred             EEEeCCCcceeeeccCcCCC-------------------------------------e-EEEEEecCCCeEEEEeCC---
Q 010296          245 HLWDTRIQEHIQAFPGHRGP-------------------------------------V-SCLTFRQGTSELFSGSFD---  283 (513)
Q Consensus       245 ~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~~d---  283 (513)
                      +.+|..+|+.+..+......                                     + ..+++.+....++.++.+   
T Consensus       179 ~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~  258 (571)
T 2ad6_A          179 NAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAP  258 (571)
T ss_dssp             EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC
T ss_pred             EEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCcc
Confidence            99999999987655421100                                     0 235677766677766532   


Q ss_pred             -------------CcEEEEeCCCCceeEEeeccc----------CCeEEEEeeCCCe----EEEEeCCCcEEEEecCCCe
Q 010296          284 -------------RTVKIWNAEDRAYISTLFGHQ----------SEVLTIDCLRKER----VLTVGRDRSMQLWKVPEES  336 (513)
Q Consensus       284 -------------g~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~----~~~~~~d~~i~iwd~~~~~  336 (513)
                                   +.|..+|..+++.+..+....          .++. +....+++    ++.++.+|.++++|..+++
T Consensus       259 ~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  337 (571)
T 2ad6_A          259 WNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             SCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence                         359999999999887765321          1111 22223563    4467789999999998887


Q ss_pred             ee
Q 010296          337 RL  338 (513)
Q Consensus       337 ~~  338 (513)
                      .+
T Consensus       338 ~~  339 (571)
T 2ad6_A          338 LI  339 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.85  E-value=6e-07  Score=91.35  Aligned_cols=275  Identities=12%  Similarity=0.078  Sum_probs=149.2

Q ss_pred             EEEECC-CCCeEEEEeCCc-----------eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          164 AVALSE-DDSKGFSASKDG-----------SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       164 ~~~~s~-~~~~l~t~~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      ++++.| +++.++.|+.+.           .+.+||..+++.....     .+           ...+.....++++.++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-----~~-----------~~~~~~~~~~~~~~~~  253 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-----VT-----------VTKHDMFCPGISMDGN  253 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-----EE-----------ECSCCCSSCEEEECTT
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc-----cc-----------CCCCCCccccccCCCC
Confidence            566777 888888887543           5888998877632210     00           0112233445778889


Q ss_pred             CCEEEEEeC-CCcEEEEeCCCcceeeeccCcCC-CeEEEEEecCCCeEEEEe-CC-----CcEEEEeCCCCceeEEe---
Q 010296          232 GRYLASGGL-DRHIHLWDTRIQEHIQAFPGHRG-PVSCLTFRQGTSELFSGS-FD-----RTVKIWNAEDRAYISTL---  300 (513)
Q Consensus       232 ~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~---  300 (513)
                      ++++++|+. +..+.+||..+.+....-..+.. .-.++++.++++.++.|+ .+     ..+.+||..+.+....-   
T Consensus       254 g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~  333 (656)
T 1k3i_A          254 GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAK  333 (656)
T ss_dssp             SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSC
T ss_pred             CCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcc
Confidence            999999984 46899999887654432221211 223456667899888888 34     57999999887643320   


Q ss_pred             -ecccCCeEEEEeeCCCe-EEEEeCC---------CcEEEEecCCCeeeEEec-C---------CCCeeEEEee-cCCe-
Q 010296          301 -FGHQSEVLTIDCLRKER-VLTVGRD---------RSMQLWKVPEESRLVFRA-P---------ASSLECCCFI-SNDE-  357 (513)
Q Consensus       301 -~~~~~~v~~~~~~~~~~-~~~~~~d---------~~i~iwd~~~~~~~~~~~-~---------~~~v~~~~~~-~~~~-  357 (513)
                       ......-....+..++. ++.++.+         ..+..||..+........ .         .....++.+. .+++ 
T Consensus       334 ~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i  413 (656)
T 1k3i_A          334 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKI  413 (656)
T ss_dssp             SGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEE
T ss_pred             ccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeE
Confidence             00000000011112332 2344433         456778877665332111 1         1122333333 2555 


Q ss_pred             EEEEeCCC-----------CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEE
Q 010296          358 FLSGSDDG-----------SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS  426 (513)
Q Consensus       358 ~~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~  426 (513)
                      ++.|+.++           .|.+||..+..-.......                                  ......-.
T Consensus       414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~----------------------------------mp~~R~~~  459 (656)
T 1k3i_A          414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG----------------------------------LYFARTFH  459 (656)
T ss_dssp             EEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC----------------------------------CSSCCBSC
T ss_pred             EEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCC----------------------------------CCCCcccC
Confidence            55666432           4666666555432221000                                  00111134


Q ss_pred             EEEEecCCCEEEEecCC-----------CcEEEEEeCCCCcceeeeeecCccc-EEEEEEeecCCCEEEEEecCCC
Q 010296          427 SVTVCGGSDLAASGAGN-----------GSVRLWAIESETKDIQPLYNLPLVG-FVNSLAFAKSGQFLIAGVGQEP  490 (513)
Q Consensus       427 ~~~~s~~~~~l~~g~~d-----------g~v~vwd~~~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~l~~~~~~dg  490 (513)
                      ++++.|+++++++|+.+           ..+.+||..+.  ....+...+... ...+..+.|+|+.++.|++..+
T Consensus       460 ~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~--~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~  533 (656)
T 1k3i_A          460 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD--TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG  533 (656)
T ss_dssp             EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT--EEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred             CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC--ceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence            55667899999999854           46899998775  233333222211 1223456799999999854333

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.85  E-value=1.7e-05  Score=72.34  Aligned_cols=223  Identities=14%  Similarity=0.024  Sum_probs=136.6

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC--cEEEEeCCCCceeE
Q 010296          221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR--TVKIWNAEDRAYIS  298 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~  298 (513)
                      .....++|+++++++++-...+.|..|+.... ....+. ....+..+++.++++++++.....  .|..++..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            34778999999987777767899999997653 333332 234688999999998655544322  47777877776543


Q ss_pred             Eeec-ccCCeEEEEeeCCCeEEEEe-CCCcEEEEecCCCeeeEE--e---------cCCCCeeEEEeecCC-e-EEEEeC
Q 010296          299 TLFG-HQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVF--R---------APASSLECCCFISND-E-FLSGSD  363 (513)
Q Consensus       299 ~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~--~---------~~~~~v~~~~~~~~~-~-~~~~~~  363 (513)
                      .... .......++..+++.++++. ..+.|+++|...+.....  .         ........+  ++++ . +++-..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            2221 12223445555666666555 588899999875432111  1         111233444  6665 3 446666


Q ss_pred             CCCEEEEecCC-CCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe
Q 010296          364 DGSIELWSLLR-KKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG  440 (513)
Q Consensus       364 dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g  440 (513)
                      .+.|..|++.. ++.  ...+...                                      .....++++++|+++++.
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~~~--------------------------------------~~P~gi~vd~dG~l~va~  229 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFVEQ--------------------------------------TNIDDFAFDVEGNLYGAT  229 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEES--------------------------------------CCCSSEEEBTTCCEEEEC
T ss_pred             CCEEEEEEeCCCCCCCccEEEecc--------------------------------------CCCCCeEECCCCCEEEEe
Confidence            78899998864 221  1111000                                      115678999999887777


Q ss_pred             cCCCcEEEEEeCCCCcceeeeeecC-cccEEEEEEee---cCCCEEEEEecC
Q 010296          441 AGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFA---KSGQFLIAGVGQ  488 (513)
Q Consensus       441 ~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~v~~v~~s---p~~~~l~~~~~~  488 (513)
                      ...+.|.+++.. + . +..+..+. ....+++++|.   |++..|+++...
T Consensus       230 ~~~~~V~~~~~~-G-~-~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          230 HIYNSVVRIAPD-R-S-TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             BTTCCEEEECTT-C-C-EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCeEEEECCC-C-C-EEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            778899999864 3 2 22222222 22457899999   898888777443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.85  E-value=1.5e-06  Score=86.42  Aligned_cols=202  Identities=8%  Similarity=-0.021  Sum_probs=118.2

Q ss_pred             CCeEEEEeC-CceEEEEeC-CCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010296          171 DSKGFSASK-DGSILHWDV-SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWD  248 (513)
Q Consensus       171 ~~~l~t~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd  248 (513)
                      +..|++++. ++.|.-+|. .+++.+..+........ ...  .. ......    .+++  .+..+++++.++.|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~-~~~--~~-~~~~~~----~~~~--~~~~v~v~~~dg~l~alD  131 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAST-KAV--MC-CDVVDR----GLAY--GAGQIVKKQANGHLLALD  131 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG-GGG--CT-TCSCCC----CCEE--ETTEEEEECTTSEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccc-ccc--cc-cccccc----ccEE--ECCEEEEEeCCCEEEEEE
Confidence            456777777 899999999 89988765422110000 000  00 000001    1122  256788888899999999


Q ss_pred             CCCcceeeeccCcC--C--CeEE-EEEecCCCeEEEEeC------CCcEEEEeCCCCceeEEeecccCC-----------
Q 010296          249 TRIQEHIQAFPGHR--G--PVSC-LTFRQGTSELFSGSF------DRTVKIWNAEDRAYISTLFGHQSE-----------  306 (513)
Q Consensus       249 ~~~~~~~~~~~~~~--~--~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-----------  306 (513)
                      ..+|+.+..+....  .  .+.+ .... + ..+++++.      ++.|..+|..+++.+..+......           
T Consensus       132 ~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~  209 (571)
T 2ad6_A          132 AKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNS  209 (571)
T ss_dssp             TTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred             CCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccc
Confidence            99999876554211  0  1111 1111 3 35555554      799999999999988776532110           


Q ss_pred             --------------------------e-EEEEeeCC-CeEEEEeCC----------------CcEEEEecCCCeeeE-Ee
Q 010296          307 --------------------------V-LTIDCLRK-ERVLTVGRD----------------RSMQLWKVPEESRLV-FR  341 (513)
Q Consensus       307 --------------------------v-~~~~~~~~-~~~~~~~~d----------------~~i~iwd~~~~~~~~-~~  341 (513)
                                                + ..+++.+. +.++.+..+                +.|..+|..+++.+. +.
T Consensus       210 ~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~  289 (571)
T 2ad6_A          210 ANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQ  289 (571)
T ss_dssp             TCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEec
Confidence                                      0 12344453 455554421                358999999888763 22


Q ss_pred             cCC---------CCeeEEEeecCCe----EEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296          342 APA---------SSLECCCFISNDE----FLSGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       342 ~~~---------~~v~~~~~~~~~~----~~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                      ...         .....+....+|+    ++.++.+|.++++|..+++.+..+...
T Consensus       290 ~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~  345 (571)
T 2ad6_A          290 KTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVD  345 (571)
T ss_dssp             SSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred             CCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeeccc
Confidence            211         1111122224663    567888999999999999998887643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.82  E-value=4.7e-05  Score=69.96  Aligned_cols=278  Identities=8%  Similarity=-0.022  Sum_probs=153.6

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ...+.+|.|.+.+..+++ +..|.| +...+.++.-..+..               ........+.+|.|.+ +..+++ 
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~~~-   95 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGWIV-   95 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEEEE-
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEEEE-
Confidence            457999999888777774 556765 333444432211100               0011234688999986 444444 


Q ss_pred             eCCCcEEEEeCCCcceeeecc---CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce-eEEeecccCCeEEEEeeC
Q 010296          239 GLDRHIHLWDTRIQEHIQAFP---GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY-ISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~  314 (513)
                      +..+.|+. ....++.-..+.   .+...+..+.+.+++..++++ .+|.|..- ...++. ..........+..+.+.+
T Consensus        96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~  172 (327)
T 2xbg_A           96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP  172 (327)
T ss_dssp             EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT
T ss_pred             ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC
Confidence            44565544 323333222221   233557888887776655554 45654332 222332 222234456788999999


Q ss_pred             CCeEEEEeCCCcEEEEe-c--CCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCC
Q 010296          315 KERVLTVGRDRSMQLWK-V--PEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGL  391 (513)
Q Consensus       315 ~~~~~~~~~d~~i~iwd-~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  391 (513)
                      ++.+++++..+.++.-. -  .+-..+ .......+..+.+.+++.+++++.+|.+++.+...++.-..+....      
T Consensus       173 ~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~------  245 (327)
T 2xbg_A          173 SGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPL------  245 (327)
T ss_dssp             TSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTT------
T ss_pred             CCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCc------
Confidence            88888877777765543 2  222222 2334456788888888888777788887766422222111111000      


Q ss_pred             CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec-CcccEE
Q 010296          392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL-PLVGFV  470 (513)
Q Consensus       392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~v  470 (513)
                                                 ......+..+++.+++.+++++. +|.| ++....+ .....+... .....+
T Consensus       246 ---------------------------~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~  295 (327)
T 2xbg_A          246 ---------------------------RRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNF  295 (327)
T ss_dssp             ---------------------------SSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCC
T ss_pred             ---------------------------ccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCe
Confidence                                       00111278889998887777665 6666 3444444 444444321 123557


Q ss_pred             EEEEeecCCCEEEEEecCCCccccccc
Q 010296          471 NSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       471 ~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      .+|.|.+++. ++++ +.+|.|..++-
T Consensus       296 ~~v~~~~~~~-~~~~-G~~G~i~~~~~  320 (327)
T 2xbg_A          296 YKILFFSPDQ-GFIL-GQKGILLRYVT  320 (327)
T ss_dssp             CEEEEEETTE-EEEE-CSTTEEEEECC
T ss_pred             EEEEEECCCc-eEEE-cCCceEEEEcC
Confidence            8888886655 4444 67888766653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.81  E-value=4.6e-06  Score=71.50  Aligned_cols=195  Identities=10%  Similarity=-0.015  Sum_probs=125.5

Q ss_pred             ceeeeccCcC--CCeEEEEEecCCCeEEEEeCC--CcEEEEeCCCCceeEEeecccCC-eEEEEeeCCCeEE-EEeCCCc
Q 010296          253 EHIQAFPGHR--GPVSCLTFRQGTSELFSGSFD--RTVKIWNAEDRAYISTLFGHQSE-VLTIDCLRKERVL-TVGRDRS  326 (513)
Q Consensus       253 ~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~-~~~~d~~  326 (513)
                      +.+..++ |.  .....+.|++ +.++.+.+..  ..|+++|+.+++.+..+...... --.++.. +++++ ..-.++.
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~   86 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred             EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence            3455553 54  3467899986 4445565654  48999999999998877533322 1334444 34555 5557899


Q ss_pred             EEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296          327 MQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS  406 (513)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  406 (513)
                      +.+||..+.+.+........-..++.. .+.|+++..++.|.++|..+.+.+..+......                   
T Consensus        87 v~v~D~~tl~~~~ti~~~~~Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g-------------------  146 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGEGWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG-------------------  146 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETT-------------------
T ss_pred             EEEEECCcCcEEEEEeCCCCceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC-------------------
Confidence            999999998877443333333455532 335666666889999999999998888643210                   


Q ss_pred             CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec-----------CcccEEEEEEe
Q 010296          407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL-----------PLVGFVNSLAF  475 (513)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-----------~~~~~v~~v~~  475 (513)
                                   .....++-+.+. +|++++..-....|.+.|..++ +.+..+...           +.....+.|++
T Consensus       147 -------------~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~  211 (243)
T 3mbr_X          147 -------------RPLDNLNELEWV-NGELLANVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTNDVLNGIAF  211 (243)
T ss_dssp             -------------EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSSCEEEEEE
T ss_pred             -------------cccccceeeEEe-CCEEEEEECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcCCceEEEEE
Confidence                         001125666665 6666655556778999999988 333332211           12346899999


Q ss_pred             ecCCCEEEEE
Q 010296          476 AKSGQFLIAG  485 (513)
Q Consensus       476 sp~~~~l~~~  485 (513)
                      +|++..|+++
T Consensus       212 d~~~~~lfVT  221 (243)
T 3mbr_X          212 DAEHDRLFVT  221 (243)
T ss_dssp             ETTTTEEEEE
T ss_pred             cCCCCEEEEE
Confidence            9998887777

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.81  E-value=9.5e-07  Score=87.73  Aligned_cols=203  Identities=7%  Similarity=-0.009  Sum_probs=119.7

Q ss_pred             CCeEEEEeC-CceEEEEeC-CCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE----EEEEeCCCcE
Q 010296          171 DSKGFSASK-DGSILHWDV-SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY----LASGGLDRHI  244 (513)
Q Consensus       171 ~~~l~t~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~s~~~dg~i  244 (513)
                      +..|++++. ++.|.-+|. .+++.+..+..........       ....+ .....++++|.+..    |++++.++.|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~-------~~~~~-~~~~g~av~p~~g~~~~rV~v~t~dg~l  133 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARA-------VACCD-LVNRGLAYWPGDGKTPALILKTQLDGNV  133 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGG-------GCSSC-SCCCCCEEECCCSSSCCEEEEECTTSEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccc-------ccccc-ccccceEEEecCCcceeEEEEEcCCCEE
Confidence            456777777 889999999 8998876552211100000       00000 00112345443434    7888889999


Q ss_pred             EEEeCCCcceeeeccCcC----CCeEE-EEEecCCCeEEEEe------CCCcEEEEeCCCCceeEEeecccCC-------
Q 010296          245 HLWDTRIQEHIQAFPGHR----GPVSC-LTFRQGTSELFSGS------FDRTVKIWNAEDRAYISTLFGHQSE-------  306 (513)
Q Consensus       245 ~vwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~-------  306 (513)
                      ..+|..+|+.+-......    ..+.+ ..+. ++ .+++++      .+|.|+.+|..+++.+..+......       
T Consensus       134 ~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p  211 (599)
T 1w6s_A          134 AALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLAS  211 (599)
T ss_dssp             EEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred             EEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccc
Confidence            999999999876554221    01111 1111 33 455554      3799999999999988776532111       


Q ss_pred             ------------------------------e-EEEEeeCC-CeEEEEeCC----------------CcEEEEecCCCeee
Q 010296          307 ------------------------------V-LTIDCLRK-ERVLTVGRD----------------RSMQLWKVPEESRL  338 (513)
Q Consensus       307 ------------------------------v-~~~~~~~~-~~~~~~~~d----------------~~i~iwd~~~~~~~  338 (513)
                                                    + ..+++.+. +.++.+..+                +.|..+|..+++.+
T Consensus       212 ~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~  291 (599)
T 1w6s_A          212 DFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK  291 (599)
T ss_dssp             TTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE
T ss_pred             ccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee
Confidence                                          0 12334443 455555543                47999999998876


Q ss_pred             E-EecCCC---------CeeEEEee-cCC---e-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          339 V-FRAPAS---------SLECCCFI-SND---E-FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       339 ~-~~~~~~---------~v~~~~~~-~~~---~-~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      - +.....         ...-+... .+|   . ++.++.+|.++++|..+++++.....
T Consensus       292 W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  351 (599)
T 1w6s_A          292 FGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKL  351 (599)
T ss_dssp             EEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             eEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccc
Confidence            3 222211         11112222 355   3 55788999999999999999887764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.79  E-value=1.6e-06  Score=86.09  Aligned_cols=158  Identities=11%  Similarity=0.096  Sum_probs=96.4

Q ss_pred             EEECCCCCe----EEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe-
Q 010296          165 VALSEDDSK----GFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG-  239 (513)
Q Consensus       165 ~~~s~~~~~----l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-  239 (513)
                      ++++|.+..    |++++.|+.|..+|..+++.+.........          ........++.    . ++ .+++++ 
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~----------~~~~~~ssP~v----~-~g-~V~vg~~  174 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK----------VGSTLTIAPYV----V-KD-KVIIGSS  174 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG----------GTCBCCSCCEE----E-TT-EEEECCB
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC----------ccceeecCCEE----E-CC-EEEEEec
Confidence            445444444    888889999999999999887643110000          00000111111    1 34 455544 


Q ss_pred             -----CCCcEEEEeCCCcceeeeccCcCCC-------------------------------------e-EEEEEecCCCe
Q 010296          240 -----LDRHIHLWDTRIQEHIQAFPGHRGP-------------------------------------V-SCLTFRQGTSE  276 (513)
Q Consensus       240 -----~dg~i~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~  276 (513)
                           .+|.|+.+|..+|+.+-.+......                                     + ..+++.+...+
T Consensus       175 g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~  254 (599)
T 1w6s_A          175 GAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNL  254 (599)
T ss_dssp             CGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTE
T ss_pred             ccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCE
Confidence                 3789999999999987655421110                                     1 13566677777


Q ss_pred             EEEEeCC----------------CcEEEEeCCCCceeEEeecccCC---------eEEEEee-CCC---e-EEEEeCCCc
Q 010296          277 LFSGSFD----------------RTVKIWNAEDRAYISTLFGHQSE---------VLTIDCL-RKE---R-VLTVGRDRS  326 (513)
Q Consensus       277 l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~---------v~~~~~~-~~~---~-~~~~~~d~~  326 (513)
                      ++.++.+                +.|..+|..+++.+..+......         ..-+... .++   . ++.++.+|.
T Consensus       255 vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~  334 (599)
T 1w6s_A          255 IYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGI  334 (599)
T ss_dssp             EEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSE
T ss_pred             EEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcE
Confidence            8877655                37999999999988776543211         1112222 345   3 446778999


Q ss_pred             EEEEecCCCeee
Q 010296          327 MQLWKVPEESRL  338 (513)
Q Consensus       327 i~iwd~~~~~~~  338 (513)
                      ++++|..+++.+
T Consensus       335 l~~lD~~tG~~l  346 (599)
T 1w6s_A          335 VYTLDRTDGALV  346 (599)
T ss_dssp             EEEEETTTCCEE
T ss_pred             EEEEECCCCCEe
Confidence            999999988776

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.78  E-value=9.8e-07  Score=91.11  Aligned_cols=193  Identities=10%  Similarity=0.018  Sum_probs=116.0

Q ss_pred             ccCC-CeEEEEEC-CCCCeEEEEe-CC----ceEEEEeCCCC-ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296          157 KHRQ-SVTAVALS-EDDSKGFSAS-KD----GSILHWDVSSG-KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV  228 (513)
Q Consensus       157 ~h~~-~V~~~~~s-~~~~~l~t~~-~d----g~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (513)
                      +|.- .+...+|| |||++||-+. .+    .+|+++|+.++ +.+..                     .-......++|
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---------------------~~~~~~~~~~W  228 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---------------------KVSGTNGEIVW  228 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---------------------CEEEECSCCEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---------------------cccCceeeEEE
Confidence            3443 68889999 9999888443 23    35999999988 53210                     00111346899


Q ss_pred             cCCCCEEEEEeCC-----CcEEEEeCCCcce--eeecc-CcCCCeEEEEEecCCCeEEEEeC---CCcEEEEeCCCCc-e
Q 010296          229 SSDGRYLASGGLD-----RHIHLWDTRIQEH--IQAFP-GHRGPVSCLTFRQGTSELFSGSF---DRTVKIWNAEDRA-Y  296 (513)
Q Consensus       229 s~~~~~l~s~~~d-----g~i~vwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~  296 (513)
                      +|||+.|+....+     ..|+++++.++..  ...+. ........+.|+|++++|+..+.   ...|+++|+.++. .
T Consensus       229 spDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~  308 (751)
T 2xe4_A          229 GPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH  308 (751)
T ss_dssp             CSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred             ecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence            9999888877654     3688888877642  22222 22345678899999999886553   3468889998752 1


Q ss_pred             e--EEe-ecccCCeEEEEeeCCCeEEEEeC-C----CcEEEEecCCC-eeeE-EecCCC--CeeEEEeecCCeEEEEeCC
Q 010296          297 I--STL-FGHQSEVLTIDCLRKERVLTVGR-D----RSMQLWKVPEE-SRLV-FRAPAS--SLECCCFISNDEFLSGSDD  364 (513)
Q Consensus       297 ~--~~~-~~~~~~v~~~~~~~~~~~~~~~~-d----~~i~iwd~~~~-~~~~-~~~~~~--~v~~~~~~~~~~~~~~~~d  364 (513)
                      .  ..+ ........++.|+.++.|+..+. +    ..|..+++.+. .... +..+..  .+..+.+..+..+++...+
T Consensus       309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~  388 (751)
T 2xe4_A          309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRA  388 (751)
T ss_dssp             CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEET
T ss_pred             ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeC
Confidence            2  333 33445567777666777665443 2    25667776642 2122 233333  3444555432235566777


Q ss_pred             CCEEEE
Q 010296          365 GSIELW  370 (513)
Q Consensus       365 g~i~iw  370 (513)
                      +..+||
T Consensus       389 g~~~l~  394 (751)
T 2xe4_A          389 GLTRIW  394 (751)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            765444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.76  E-value=1e-05  Score=69.41  Aligned_cols=158  Identities=9%  Similarity=-0.029  Sum_probs=107.9

Q ss_pred             ccEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCcceeeeccCcCCCe-EEEEEecCCCeEE-EEeCCCcEEEEeCCCCce
Q 010296          221 KHILALAVSSDGRYLASGGLD--RHIHLWDTRIQEHIQAFPGHRGPV-SCLTFRQGTSELF-SGSFDRTVKIWNAEDRAY  296 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~  296 (513)
                      .-...+.|++ +.++.+.+..  ..|+++|+.+++.+..+....... ..+++.  +..|+ ..-.++.+.+||..+.+.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence            4467899986 5556666654  489999999999988776433221 234443  45555 445688999999999999


Q ss_pred             eEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEec---CC---CCeeEEEeecCCeEEEEe-CCCCEEE
Q 010296          297 ISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRA---PA---SSLECCCFISNDEFLSGS-DDGSIEL  369 (513)
Q Consensus       297 ~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~~~~~-~dg~i~i  369 (513)
                      +.++... ..-..+++. .++++.+..++.|.++|..+.+......   +.   ..+..+.+. +|.+.+.. .+..|.+
T Consensus        98 ~~ti~~~-~~Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v  174 (243)
T 3mbr_X           98 RARFRYP-GEGWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIAR  174 (243)
T ss_dssp             EEEEECS-SCCCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EEEEeCC-CCceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence            9888743 333555542 3466666668899999998876652221   11   234455655 66655444 5789999


Q ss_pred             EecCCCCeeEEeecC
Q 010296          370 WSLLRKKPVYIVKNA  384 (513)
Q Consensus       370 wd~~~~~~~~~~~~~  384 (513)
                      .|..+++.+..+...
T Consensus       175 IDp~tG~V~~~idl~  189 (243)
T 3mbr_X          175 IDPASGKVVAWIDLQ  189 (243)
T ss_dssp             ECTTTCBEEEEEECG
T ss_pred             EECCCCCEEEEEECC
Confidence            999999999988743

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.75  E-value=2.2e-06  Score=74.14  Aligned_cols=155  Identities=7%  Similarity=0.005  Sum_probs=107.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEee
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      ...|.|+ ++.++++.+.+|.|+++|+.+++.+..+ -. .........+.+..|+ +.-.++.+.+||..+.+.+.++.
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            5678887 4666777788889999999999988877 22 2333322333444555 44468899999999999998887


Q ss_pred             cccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEe---cCC---CCeeEEEeecCCeEEEEe-CCCCEEEEecCC
Q 010296          302 GHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFR---APA---SSLECCCFISNDEFLSGS-DDGSIELWSLLR  374 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~---~~~---~~v~~~~~~~~~~~~~~~-~dg~i~iwd~~~  374 (513)
                      . ...-..+++. ...|+.+..++.|.++|..+.+.....   ...   ..+..+.|. +|.+.+.. ....|.+.|..+
T Consensus       134 ~-~~eGwGLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T  210 (268)
T 3nok_A          134 Y-SGEGWGLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPAT  210 (268)
T ss_dssp             C-SSCCCCEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT
T ss_pred             C-CCceeEEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCC
Confidence            4 3333455543 346666666899999999887765221   111   234556666 66755544 678999999999


Q ss_pred             CCeeEEeec
Q 010296          375 KKPVYIVKN  383 (513)
Q Consensus       375 ~~~~~~~~~  383 (513)
                      ++.+..+..
T Consensus       211 G~V~~~Idl  219 (268)
T 3nok_A          211 GTVVGVIDA  219 (268)
T ss_dssp             CBEEEEEEC
T ss_pred             CcEEEEEEC
Confidence            999998874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.72  E-value=1.4e-05  Score=72.75  Aligned_cols=194  Identities=10%  Similarity=-0.026  Sum_probs=116.6

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      .....++|+++++++++-...+.|..|+..+.. ...+                    .....+..+++.++|+++++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~--------------------~~~~~p~gia~~~dG~l~vad~   90 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHA--------------------TVEGKVSGLAFTSNGDLVATGW   90 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEE--------------------ECSSEEEEEEECTTSCEEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEE--------------------eCCCCceeEEEcCCCcEEEEec
Confidence            567899999999977777688999999977532 2211                    1123588999999999766654


Q ss_pred             CC--CcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce-eEEee---------cccCC
Q 010296          240 LD--RHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY-ISTLF---------GHQSE  306 (513)
Q Consensus       240 ~d--g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~---------~~~~~  306 (513)
                      ..  ..|..++..+++....... .......++..+++..+++-...+.|+++|..++.. +....         ..-..
T Consensus        91 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A           91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             cCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            32  2477778777765432221 222345556555544444444688999999876431 21111         11123


Q ss_pred             eEEEEeeCCC-eEEE-EeCCCcEEEEecCC-Cee--eEEecCCCCeeEEEeecCCeEEE-EeCCCCEEEEecCCCCe
Q 010296          307 VLTIDCLRKE-RVLT-VGRDRSMQLWKVPE-ESR--LVFRAPASSLECCCFISNDEFLS-GSDDGSIELWSLLRKKP  377 (513)
Q Consensus       307 v~~~~~~~~~-~~~~-~~~d~~i~iwd~~~-~~~--~~~~~~~~~v~~~~~~~~~~~~~-~~~dg~i~iwd~~~~~~  377 (513)
                      ...+  ++++ .+++ -...+.|..|++.. +..  ............+++.++|.+++ ....+.|.+++.. ++.
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST  244 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence            4455  5655 4544 44578899999864 221  11111113456688888887554 4457889999864 544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.71  E-value=4.2e-06  Score=83.22  Aligned_cols=202  Identities=10%  Similarity=-0.023  Sum_probs=115.9

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR  250 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~  250 (513)
                      +..|++++.++.|.-+|..+++.+..+.........     +  ....-.   ..+++  .+..+++++.++.|..+|..
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~-----~--~~~~~~---~g~a~--~~~~v~~~t~dg~l~AlD~~  135 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIR-----P--CCDVVN---RGAAI--YGDKVFFGTLDASVVALNKN  135 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCC-----C--SSCSCC---CCCEE--ETTEEEEEETTTEEEEEESS
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccc-----c--ccccCC---CccEE--ECCEEEEEeCCCEEEEEECC
Confidence            345666665445899999999987655211110000     0  000000   11122  25577888889999999999


Q ss_pred             CcceeeeccCcCC----CeE-EEEEec---CCC-eEEEEe------CCCcEEEEeCCCCceeEEeecccCCe--------
Q 010296          251 IQEHIQAFPGHRG----PVS-CLTFRQ---GTS-ELFSGS------FDRTVKIWNAEDRAYISTLFGHQSEV--------  307 (513)
Q Consensus       251 ~~~~~~~~~~~~~----~v~-~~~~~~---~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~v--------  307 (513)
                      +|+.+-.+.....    .+. ...+..   +++ .+++++      .++.|+.+|..+++.+.........+        
T Consensus       136 TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~  215 (582)
T 1flg_A          136 TGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDS  215 (582)
T ss_dssp             SCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEE
T ss_pred             CCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccc
Confidence            9998766543210    111 111121   233 566654      37899999999999877653211000        


Q ss_pred             ---------------------------------EEEEeeCC-CeEEEEeC--------------------C----CcEEE
Q 010296          308 ---------------------------------LTIDCLRK-ERVLTVGR--------------------D----RSMQL  329 (513)
Q Consensus       308 ---------------------------------~~~~~~~~-~~~~~~~~--------------------d----~~i~i  329 (513)
                                                       ..+++.+. +.++++..                    |    +.|..
T Consensus       216 ~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~A  295 (582)
T 1flg_A          216 TVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVG  295 (582)
T ss_dssp             EESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEE
T ss_pred             ccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEE
Confidence                                             12334443 45554442                    2    57999


Q ss_pred             EecCCCeeeEEe-c--CC-------CCeeEEEee-cCC----eEEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296          330 WKVPEESRLVFR-A--PA-------SSLECCCFI-SND----EFLSGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       330 wd~~~~~~~~~~-~--~~-------~~v~~~~~~-~~~----~~~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                      +|..+++.+-.. .  +.       ....-+... .+|    .++.++.+|.++++|..+++++..+...
T Consensus       296 lD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~  365 (582)
T 1flg_A          296 VDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV  365 (582)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred             EeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence            999998877332 2  21       111111221 345    3668899999999999999999887654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.66  E-value=2.3e-05  Score=68.28  Aligned_cols=200  Identities=9%  Similarity=0.090  Sum_probs=131.5

Q ss_pred             hhhccCCCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          154 VLLKHRQSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       154 ~~~~h~~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      .+.+-.+.+..|+|+|++..|+ +...++.|...|.. ++.+..+.                 + .-....-.|++.+++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l-~g~~D~EGIa~~~~g   81 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------L-DFVKDLETIEYIGDN   81 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------C-SSCSSEEEEEECSTT
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------c-CCCCChHHeEEeCCC
Confidence            4556667899999999876555 56778999999988 76665440                 1 112457788888888


Q ss_pred             CEEEEEeCCCcEEEEeCCCcce---eeec------cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC---CceeEEe
Q 010296          233 RYLASGGLDRHIHLWDTRIQEH---IQAF------PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED---RAYISTL  300 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~~~---~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~  300 (513)
                      .++++.-.++.+.++++.....   +...      .........|+|+|.++.|+++.......+|.+..   ...+..+
T Consensus        82 ~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~  161 (255)
T 3qqz_A           82 QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHIS  161 (255)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEE
T ss_pred             EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeee
Confidence            8777765678899988765432   1221      12345679999999998888777655555555531   1112222


Q ss_pred             e-------cccCCeEEEEeeCC-CeEE-EEeCCCcEEEEecCCCeeeEEecC---------CCCeeEEEeecCCeEEEEe
Q 010296          301 F-------GHQSEVLTIDCLRK-ERVL-TVGRDRSMQLWKVPEESRLVFRAP---------ASSLECCCFISNDEFLSGS  362 (513)
Q Consensus       301 ~-------~~~~~v~~~~~~~~-~~~~-~~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~  362 (513)
                      .       .+...+.++++.|. +.++ .....+.|.++|........+...         ......++|.++|.+...+
T Consensus       162 ~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          162 KDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             ECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             cchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence            1       12335688999985 5665 444678888999876533322222         1356789999999877778


Q ss_pred             CCCCEEEEec
Q 010296          363 DDGSIELWSL  372 (513)
Q Consensus       363 ~dg~i~iwd~  372 (513)
                      .-+.+++|.-
T Consensus       242 E~n~~y~f~~  251 (255)
T 3qqz_A          242 EPNRFYRFTP  251 (255)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCceEEEEEe
Confidence            7776666653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.59  E-value=0.00027  Score=65.49  Aligned_cols=236  Identities=9%  Similarity=-0.045  Sum_probs=144.1

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ....+|.+..++ .+|+.+. ...|+..++........+                    .....+..++|++....|+..
T Consensus        33 ~d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~--------------------~~~~~~~~l~~d~~~~~ly~~   90 (349)
T 3v64_C           33 PDRRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLL--------------------NNLENAIALDFHHRRELVFWS   90 (349)
T ss_dssp             TTSSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEE--------------------CSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCCcccccccC-ceeEeec-ccceEEEeCCCCeeEEee--------------------cCCCceEEEEEeccccEEEEE
Confidence            445677777774 3444443 345777777654432211                    123347899999865555544


Q ss_pred             -eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-C
Q 010296          239 -GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-K  315 (513)
Q Consensus       239 -~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~  315 (513)
                       ...+.|..+++........+.........+++.+.+..|+ +-...+.|.+.++........+.........+++.| .
T Consensus        91 D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~  170 (349)
T 3v64_C           91 DVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME  170 (349)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTT
T ss_pred             eccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCc
Confidence             4678899999886654443333334567899998665555 555578899999876543333333445678999998 4


Q ss_pred             CeEEEEe-CC-CcEEEEecCCCeeeEEe-cCCCCeeEEEeecC-CeE-EEEeCCCCEEEEecCCCCeeEEeecCCCcccC
Q 010296          316 ERVLTVG-RD-RSMQLWKVPEESRLVFR-APASSLECCCFISN-DEF-LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDG  390 (513)
Q Consensus       316 ~~~~~~~-~d-~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~-~~~-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  390 (513)
                      +.++.+. .. +.|..+++.......+. ........+++++. +.| ++-...+.|..+++........+...      
T Consensus       171 g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~------  244 (349)
T 3v64_C          171 GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG------  244 (349)
T ss_dssp             TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------
T ss_pred             CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC------
Confidence            5665444 34 77888888765443332 23445778999974 454 45556778999987654332222111      


Q ss_pred             CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                                     ......|++ ..+.++++-...+.|..++..++
T Consensus       245 -------------------------------~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          245 -------------------------------LPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             -------------------------------CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             -------------------------------CCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence                                           112567777 34556666666777888875454

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.58  E-value=3.6e-05  Score=73.56  Aligned_cols=153  Identities=4%  Similarity=-0.063  Sum_probs=97.5

Q ss_pred             CCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          160 QSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       160 ~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      .....|+++| ++..|+.+...+.|+.+|+.++......                    ........|+|++++++|+++
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--------------------~~~~~P~~ia~d~~G~~lyva  196 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--------------------SGLSKVRTICWTHEADSMIIT  196 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--------------------CCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--------------------cCCCCcceEEEeCCCCEEEEE
Confidence            3568899998 4566666655588999998876543322                    123458899999999966666


Q ss_pred             eCC-C----cEEEEeCCCccee--eeccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCCceeEEee-cccCCeEE
Q 010296          239 GLD-R----HIHLWDTRIQEHI--QAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDRAYISTLF-GHQSEVLT  309 (513)
Q Consensus       239 ~~d-g----~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~  309 (513)
                      ... +    .+.+++ ..+...  ..+. .......++++| ++.++++-...+.|..++..++....... +.......
T Consensus       197 d~~~~~~~~~v~~~~-~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~g  274 (430)
T 3tc9_A          197 NDQNNNDRPNNYILT-RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFH  274 (430)
T ss_dssp             ECCSCTTSEEEEEEE-GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEE
T ss_pred             eCCCCcccceEEEEe-CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCccee
Confidence            542 2    233344 333222  2222 123456788999 66655565667899999998765422222 12235688


Q ss_pred             EEeeCCCe-EEEEe-CCCcEEEEecCC
Q 010296          310 IDCLRKER-VLTVG-RDRSMQLWKVPE  334 (513)
Q Consensus       310 ~~~~~~~~-~~~~~-~d~~i~iwd~~~  334 (513)
                      ++++|++. ++.+. ..+.|..++...
T Consensus       275 ia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          275 IQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            99999986 55444 578899987653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.53  E-value=5.2e-05  Score=70.41  Aligned_cols=249  Identities=10%  Similarity=0.042  Sum_probs=126.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce--eeecc---CcCCCeEEEEEecC---CCeEEEEeCC------CcEE
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEH--IQAFP---GHRGPVSCLTFRQG---TSELFSGSFD------RTVK  287 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~d------g~i~  287 (513)
                      ....|+|.|+|+++++ ...|.|++++  .+..  +..+.   ........|+|+|+   +..|+++...      +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4678999999985555 5569999998  3332  22221   22456889999998   5566654432      6788


Q ss_pred             EEeCCCCce-----e-EEee---cccCCeEEEEeeCCCeEEEEeCC--------------CcEEEEecCCC---------
Q 010296          288 IWNAEDRAY-----I-STLF---GHQSEVLTIDCLRKERVLTVGRD--------------RSMQLWKVPEE---------  335 (513)
Q Consensus       288 iwd~~~~~~-----~-~~~~---~~~~~v~~~~~~~~~~~~~~~~d--------------~~i~iwd~~~~---------  335 (513)
                      .|++.....     + ..+.   ........++|.|++.|+++..+              +.|..++....         
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            888764321     1 1122   11123468899999987755322              45666655431         


Q ss_pred             ----eeeEEecCCCCeeEEEeec-CCeEEEEeCC-CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCC
Q 010296          336 ----SRLVFRAPASSLECCCFIS-NDEFLSGSDD-GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENG  409 (513)
Q Consensus       336 ----~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  409 (513)
                          ....+.........++|.| .+.|.++... ..+.  + .....+..+.......  .......       ....+
T Consensus       189 ~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~--~-~~~dei~~i~~G~nyG--wp~~~g~-------~~~~~  256 (352)
T 2ism_A          189 RRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQ--G-YGHDEVNLIVPGGNYG--WPRVVGR-------GNDPR  256 (352)
T ss_dssp             CTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC---------CCCEEEEECTTCBCC--TTTCCSC-------CCCTT
T ss_pred             CCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCC--C-CCCeEEEEeccCCcCC--CCcccCC-------CCCCC
Confidence                1111111122345677777 5555443322 1111  1 1112233322111000  0000000       00000


Q ss_pred             CCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcc-----eeeeeecCcccEEEEEEeecCCCEEEE
Q 010296          410 NLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKD-----IQPLYNLPLVGFVNSLAFAKSGQFLIA  484 (513)
Q Consensus       410 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~-----~~~~~~~~~~~~v~~v~~sp~~~~l~~  484 (513)
                      ...+. +. .........++| .+|.++++.-..+.|...++......     ...+.  .....+..|++.|||.++++
T Consensus       257 ~~~p~-~~-~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~  331 (352)
T 2ism_A          257 YRDPL-YF-WPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVT  331 (352)
T ss_dssp             SCCCS-EE-CTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEE
T ss_pred             CcCCe-Ee-cCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEE
Confidence            00000 00 011223567777 46777777767778888887654221     11111  12457899999999988887


Q ss_pred             EecCCC
Q 010296          485 GVGQEP  490 (513)
Q Consensus       485 ~~~~dg  490 (513)
                      ..+.+|
T Consensus       332 ~~~~~g  337 (352)
T 2ism_A          332 TSNRDG  337 (352)
T ss_dssp             ECSTTT
T ss_pred             EeCCCC
Confidence            745555

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.52  E-value=7.1e-05  Score=71.55  Aligned_cols=251  Identities=7%  Similarity=0.019  Sum_probs=140.3

Q ss_pred             CCeEEEEECCC--CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296          160 QSVTAVALSED--DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS  237 (513)
Q Consensus       160 ~~V~~~~~s~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  237 (513)
                      ....+|+|+|+  ...|+.+...+.|+.++..++......                    ........|+|+++|+++++
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--------------------~~~~~P~giavd~dG~lyVa  198 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--------------------TNIGQCADVNFTLNGDMVVV  198 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--------------------CCCSCEEEEEECTTCCEEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--------------------cCCCCccEEEECCCCCEEEE
Confidence            35678999994  445555544489999998777654322                    12345889999999994444


Q ss_pred             EeCC---C-cEEEEeCCCcce-eeeccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCCceeEEeec--ccCCeEE
Q 010296          238 GGLD---R-HIHLWDTRIQEH-IQAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDRAYISTLFG--HQSEVLT  309 (513)
Q Consensus       238 ~~~d---g-~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~  309 (513)
                      ....   . .+...+...+.. ...+. .......++++| ++.++++-..++.|+.++..++.....+..  .......
T Consensus       199 d~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~  277 (433)
T 4hw6_A          199 DDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFH  277 (433)
T ss_dssp             ECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEE
T ss_pred             cCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCccc
Confidence            4321   1 233333222111 01111 223456788999 555555555678899999987765333221  1223357


Q ss_pred             EEeeCCCe-EEEEe-CCCcEEEEecCC--Cee---eEEecC---------------CCCeeEEEe---------ecCCeE
Q 010296          310 IDCLRKER-VLTVG-RDRSMQLWKVPE--ESR---LVFRAP---------------ASSLECCCF---------ISNDEF  358 (513)
Q Consensus       310 ~~~~~~~~-~~~~~-~d~~i~iwd~~~--~~~---~~~~~~---------------~~~v~~~~~---------~~~~~~  358 (513)
                      ++++|++. ++.+. ..+.|+.+++..  +..   ..+.+.               ......+++         .+++.|
T Consensus       278 ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l  357 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF  357 (433)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred             EEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence            99999885 55544 567899977652  211   111111               123556788         566665


Q ss_pred             E-EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe-cCCCE
Q 010296          359 L-SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC-GGSDL  436 (513)
Q Consensus       359 ~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~  436 (513)
                      + +-...+.|+.++. ++. +.++.......  ...+            ..+.     ............|+++ ++|.+
T Consensus       358 yvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~--~~G~------------~dG~-----~~~~~~~~~P~giavd~~~g~l  416 (433)
T 4hw6_A          358 YFCDRDSHTVRVLTP-EGR-VTTYAGRGNSR--EWGY------------VDGE-----LRSQALFNHPTSIAYDMKRKCF  416 (433)
T ss_dssp             EEEETTTTEEEEECT-TSE-EEEEECCCTTC--SSCC------------BCEE-----TTTTCBCSSEEEEEEETTTTEE
T ss_pred             EEEECCCCEEEEECC-CCC-EEEEEeCCCCC--cccc------------CCCc-----cccccEeCCCcEEEEECCCCEE
Confidence            4 4455678888874 443 33332211100  0000            0000     0001122337899999 67777


Q ss_pred             EEEecCCCcEEEEEeC
Q 010296          437 AASGAGNGSVRLWAIE  452 (513)
Q Consensus       437 l~~g~~dg~v~vwd~~  452 (513)
                      +++-..++.|+.+++.
T Consensus       417 yVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          417 YIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEGGGTEEEEEEEC
T ss_pred             EEEeCCCCEEEEEecC
Confidence            7777777889888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.51  E-value=0.00053  Score=64.50  Aligned_cols=234  Identities=10%  Similarity=-0.042  Sum_probs=143.4

Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-EEe
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA-SGG  239 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~  239 (513)
                      .-+|.+..+. .+|+.+. ...|+.+++.+......+                    .....+..++|++.+..|+ +-.
T Consensus        78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~--------------------~~~~~~~gl~~d~~~~~ly~~D~  135 (386)
T 3v65_B           78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLL--------------------NNLENAIALDFHHRRELVFWSDV  135 (386)
T ss_dssp             SSCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEE--------------------CSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCeECCcccc-ceeEeec-CccceeeccCCCcEEEEe--------------------cCCCccEEEEEecCCCeEEEEeC
Confidence            3456666553 3444443 356888887765433221                    1233478999998655554 445


Q ss_pred             CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC-Ce
Q 010296          240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ER  317 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~  317 (513)
                      ..+.|+.+++........+.........+++.+.+..|+ +-...+.|.+.++........+.........+++.|. +.
T Consensus       136 ~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~  215 (386)
T 3v65_B          136 TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT  215 (386)
T ss_dssp             TTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             CCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence            678899999887654444433334567889998666555 4455678999888755433333334456789999974 55


Q ss_pred             EEEEe-CC-CcEEEEecCCCeeeEEe-cCCCCeeEEEeecC-CeE-EEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296          318 VLTVG-RD-RSMQLWKVPEESRLVFR-APASSLECCCFISN-DEF-LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK  392 (513)
Q Consensus       318 ~~~~~-~d-~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~-~~~-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  392 (513)
                      ++.+. .. +.|..+++.......+. ........+++++. +.| ++-+..+.|..+++........+...        
T Consensus       216 ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--------  287 (386)
T 3v65_B          216 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--------  287 (386)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--------
T ss_pred             EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--------
Confidence            55444 33 67888888765444332 33445788999964 454 45566778988887654332222211        


Q ss_pred             CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                                   ......|++ ..+.++++-...+.|..++..++
T Consensus       288 -----------------------------~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          288 -----------------------------LPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             -----------------------------CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             -----------------------------CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence                                         112667777 34556666667788888885555

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.50  E-value=0.00088  Score=63.29  Aligned_cols=226  Identities=8%  Similarity=-0.059  Sum_probs=139.4

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEeCC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG-GLDRHIHLWDTR  250 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~  250 (513)
                      .+|+.+. ...|+..++........+                    .....+..|+|++....|+.. ...+.|+.+++.
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~~--------------------~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~  142 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSLI--------------------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD  142 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEEE--------------------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred             ceeEEec-cceeEEEccCCcceeEec--------------------cccCcceEEeeeeccCceEEEecCCCeEEEEEcc
Confidence            3444444 367888888765433221                    234568899999866555554 456889999886


Q ss_pred             Cc----ceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-CCeEEEEeC-
Q 010296          251 IQ----EHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-KERVLTVGR-  323 (513)
Q Consensus       251 ~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~-  323 (513)
                      ..    .....+.........|++.+.+..|+ +-...+.|.+.++........+.........|++.| .+.++.+.. 
T Consensus       143 g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~  222 (400)
T 3p5b_L          143 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  222 (400)
T ss_dssp             -----CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS
T ss_pred             cCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC
Confidence            52    22333333445678999998555555 545678899999976654444443445678999998 456665542 


Q ss_pred             -CCcEEEEecCCCeeeEE-ecCCCCeeEEEeecCC-eEE-EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcC
Q 010296          324 -DRSMQLWKVPEESRLVF-RAPASSLECCCFISND-EFL-SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEG  399 (513)
Q Consensus       324 -d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                       .+.|...++.......+ .........+++.+.+ .|. +-...+.|..+++........+....              
T Consensus       223 ~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~--------------  288 (400)
T 3p5b_L          223 TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--------------  288 (400)
T ss_dssp             SSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS--------------
T ss_pred             CCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC--------------
Confidence             47888888876554433 3334567889999754 544 55567789999986544333322110              


Q ss_pred             ccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          400 KISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       400 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                           .......|++. .+.++++-...+.|..++..++
T Consensus       289 ---------------------~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          289 ---------------------RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             ---------------------TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             ---------------------CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence                                 01114566663 3455666667788888886665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.48  E-value=0.00073  Score=61.60  Aligned_cols=225  Identities=10%  Similarity=0.008  Sum_probs=134.4

Q ss_pred             EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEE-eCCCcEEEEeCCC----CceeEEeecccCCeE
Q 010296          234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSG-SFDRTVKIWNAED----RAYISTLFGHQSEVL  308 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~----~~~~~~~~~~~~~v~  308 (513)
                      +|+.+. ...|+..++.+......+. ....+..++|++.+..|+.+ ...+.|..+++.+    ......+........
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            344444 3568999998876655554 34567899999877666654 4568999999876    222222222224557


Q ss_pred             EEEeeC-CCeEEEE-eCCCcEEEEecCCCeeeEE-ecCCCCeeEEEeec-CCeEE-EEeCC-CCEEEEecCCCCeeEEee
Q 010296          309 TIDCLR-KERVLTV-GRDRSMQLWKVPEESRLVF-RAPASSLECCCFIS-NDEFL-SGSDD-GSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       309 ~~~~~~-~~~~~~~-~~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~-~~~~~-~~~~d-g~i~iwd~~~~~~~~~~~  382 (513)
                      .+++.+ .+.++.+ ...+.|.++++.......+ .........+++.| .+.++ +.... +.|..+++.... ...+.
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~  159 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV  159 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEE
Confidence            888875 5566544 5678999999876544433 23445678899997 45544 43333 677777765332 22221


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe-cCCCcEEEEEeCCCCcceeee
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG-AGNGSVRLWAIESETKDIQPL  461 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g-~~dg~v~vwd~~~~~~~~~~~  461 (513)
                      ..                                    ...+...|+++|++..|+.+ +..+.|..+++...  ....+
T Consensus       160 ~~------------------------------------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~--~~~~~  201 (316)
T 1ijq_A          160 TE------------------------------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTI  201 (316)
T ss_dssp             CS------------------------------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEE
T ss_pred             EC------------------------------------CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC--ceEEE
Confidence            10                                    11237899999876666554 46678999998753  22333


Q ss_pred             eec-CcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          462 YNL-PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       462 ~~~-~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      ... ........+++. . ..|+.+-...++|..++...+.
T Consensus       202 ~~~~~~~~~P~giav~-~-~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          202 LEDEKRLAHPFSLAVF-E-DKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EECTTTTSSEEEEEEE-T-TEEEEEETTTTEEEEEETTTCC
T ss_pred             eecCCccCCcEEEEEE-C-CEEEEEECCCCeEEEEeCCCCc
Confidence            221 122335667774 3 4555554667788888765443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.45  E-value=5.3e-05  Score=78.16  Aligned_cols=150  Identities=7%  Similarity=-0.011  Sum_probs=90.7

Q ss_pred             cEEEEEEc-CCCCEEEEEeC-CC----cEEEEeCCCc-ceeee-ccCcCCCeEEEEEecCCCeEEEEeCC-----CcEEE
Q 010296          222 HILALAVS-SDGRYLASGGL-DR----HIHLWDTRIQ-EHIQA-FPGHRGPVSCLTFRQGTSELFSGSFD-----RTVKI  288 (513)
Q Consensus       222 ~v~~~~~s-~~~~~l~s~~~-dg----~i~vwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i  288 (513)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +.+.. +.   .....++|+|+++.|+....+     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            68889999 99998886543 22    5999999988 63221 11   113468999999988876654     36888


Q ss_pred             EeCCCCce--eEEee-cccCCeEEEEeeCCCeEE-EEe---CCCcEEEEecCCC--ee--eEEec-CCCCeeEEEeecCC
Q 010296          289 WNAEDRAY--ISTLF-GHQSEVLTIDCLRKERVL-TVG---RDRSMQLWKVPEE--SR--LVFRA-PASSLECCCFISND  356 (513)
Q Consensus       289 wd~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~-~~~---~d~~i~iwd~~~~--~~--~~~~~-~~~~v~~~~~~~~~  356 (513)
                      +++.++..  ...+. ........+.|+|+++.+ ..+   ....|+++++.++  ..  ..+.. .......+.|+.++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            99887642  22222 223345678899998544 332   2456888888764  22  22222 23344455555556


Q ss_pred             eEE-EEeCC--C--CEEEEecCC
Q 010296          357 EFL-SGSDD--G--SIELWSLLR  374 (513)
Q Consensus       357 ~~~-~~~~d--g--~i~iwd~~~  374 (513)
                      .|+ ....+  +  .|..+++.+
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTS
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCC
Confidence            654 33333  2  455555543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.45  E-value=0.00049  Score=63.10  Aligned_cols=193  Identities=9%  Similarity=0.036  Sum_probs=108.1

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ...+.+|.|++ +. ++.++..+.|.. ..+.++.-..+.                ....+...+..|.+.+++..++++
T Consensus        79 ~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~tW~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~~  139 (327)
T 2xbg_A           79 DYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQSWSQIP----------------LDPKLPGSPRLIKALGNGSAEMIT  139 (327)
T ss_dssp             CCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTSSCEECC----------------CCTTCSSCEEEEEEEETTEEEEEE
T ss_pred             CccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCCCceECc----------------cccCCCCCeEEEEEECCCCEEEEe
Confidence            44688999986 34 444555665543 333333222110                001122346788887777766665


Q ss_pred             eCCCcEEEEeCCCccee-eeccCcCCCeEEEEEecCCCeEEEEeCCCcEEE-EeC--CCCceeEEeecccCCeEEEEeeC
Q 010296          239 GLDRHIHLWDTRIQEHI-QAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKI-WNA--EDRAYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~--~~~~~~~~~~~~~~~v~~~~~~~  314 (513)
                      . +|.|..- ...++.- .....+...+..+.+.+++.+++++. .|.|.. +|-  .+-+.+  -......+..+.+.+
T Consensus       140 ~-~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~  214 (327)
T 2xbg_A          140 N-VGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTP  214 (327)
T ss_dssp             T-TCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECT
T ss_pred             C-CccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeEC--CCCCCCccceeEECC
Confidence            4 5554332 2223222 22233556789999999887776664 454443 442  122222  123456788888989


Q ss_pred             CCeEEEEeCCCcEEEEecCCCeeeE-Eec----CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC
Q 010296          315 KERVLTVGRDRSMQLWKVPEESRLV-FRA----PASSLECCCFISNDEFLSGSDDGSIELWSLLRKK  376 (513)
Q Consensus       315 ~~~~~~~~~d~~i~iwd~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  376 (513)
                      ++.+++++.+|.+++.....+.... ...    ....+..+.+.+++.+++++.+|.| ++....++
T Consensus       215 ~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~  280 (327)
T 2xbg_A          215 DGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQ  280 (327)
T ss_dssp             TSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTS
T ss_pred             CCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCc
Confidence            9988888888888776422222221 111    1235778888887777766677876 34444443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.45  E-value=6e-06  Score=83.99  Aligned_cols=245  Identities=11%  Similarity=0.099  Sum_probs=131.4

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCcceee--ecc-CcCCCeEEEEEecCCCeEEEEeC-CCcEEE
Q 010296          225 ALAVSS-DGRYLASGGLDR-----------HIHLWDTRIQEHIQ--AFP-GHRGPVSCLTFRQGTSELFSGSF-DRTVKI  288 (513)
Q Consensus       225 ~~~~s~-~~~~l~s~~~dg-----------~i~vwd~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i  288 (513)
                      ++++.+ ++++++.|+.+.           .+.+||+.+++...  .+. .+.....++++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556777 888888887543           58899998776432  222 13333456788889999998884 568999


Q ss_pred             EeCCCCceeEEeecccCC-eEEEEeeCCCeEE-EEe-CC-----CcEEEEecCCCeeeEEecC-----CCCeeEEEeecC
Q 010296          289 WNAEDRAYISTLFGHQSE-VLTIDCLRKERVL-TVG-RD-----RSMQLWKVPEESRLVFRAP-----ASSLECCCFISN  355 (513)
Q Consensus       289 wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~-~~~-~d-----~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~  355 (513)
                      ||..+.+....-..+... -.++...++++++ .++ .+     ..+.+||..+..-......     ...-....+..+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~  349 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  349 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence            999877544322212222 1344555677665 555 23     5689999987764433110     000000112233


Q ss_pred             Ce-EEEEeCCC---------CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296          356 DE-FLSGSDDG---------SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV  425 (513)
Q Consensus       356 ~~-~~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  425 (513)
                      +. ++.|+.+|         .+..||..+............. .                   +.        ......-
T Consensus       350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~-~-------------------~~--------~~~~~~~  401 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN-R-------------------GV--------APDAMCG  401 (656)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEET-T-------------------EE--------CCCCBTC
T ss_pred             CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccc-c-------------------cc--------CCCCCCC
Confidence            33 45555554         4566776665433221110000 0                   00        0000012


Q ss_pred             EEEEEec-CCCEEEEecCCC-----------cEEEEEeCCCCcceeeee--ecCcccEEEEEEeecCCCEEEEEecCC--
Q 010296          426 SSVTVCG-GSDLAASGAGNG-----------SVRLWAIESETKDIQPLY--NLPLVGFVNSLAFAKSGQFLIAGVGQE--  489 (513)
Q Consensus       426 ~~~~~s~-~~~~l~~g~~dg-----------~v~vwd~~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~l~~~~~~d--  489 (513)
                      .++.|.. +++++++|+.++           .|.+||..+.  ....+.  ..+....-.+++..|+|++++.++...  
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~  479 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS--PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI  479 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC--CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC--CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence            3444443 678888887543           5777777665  222222  222222234456678999999984321  


Q ss_pred             --------CcccccccCC
Q 010296          490 --------PRLGRWGHLP  499 (513)
Q Consensus       490 --------g~v~~W~~~~  499 (513)
                              ..+.+||...
T Consensus       480 ~~~~~~~~~~v~~ydp~t  497 (656)
T 1k3i_A          480 PFEDSTPVFTPEIYVPEQ  497 (656)
T ss_dssp             TTCCCSBCCCCEEEEGGG
T ss_pred             CcCCCCcccceEEEcCCC
Confidence                    3566776543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.45  E-value=0.0011  Score=66.24  Aligned_cols=209  Identities=6%  Similarity=-0.036  Sum_probs=127.9

Q ss_pred             ccCCCeEEEEECCCCCeEEEEe-CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSAS-KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      ..-..+.+|+|++.+..|+.+. ..+.|..+++........+                  ..........|++.+.+..|
T Consensus        37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v------------------~~~~~~~P~GlAvD~~~~~l   98 (619)
T 3s94_A           37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV------------------VVSGLLSPDGLACDWLGEKL   98 (619)
T ss_dssp             BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE------------------ECSSCSCEEEEEEETTTTEE
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE------------------EeCCCCCcCeEEEEecCCEE
Confidence            3455678999999777666554 4678888888765321111                  01112457889999855544


Q ss_pred             -EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEEeecccCCeEEEEe
Q 010296          236 -ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYISTLFGHQSEVLTIDC  312 (513)
Q Consensus       236 -~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  312 (513)
                       ++-...+.|.+.++........+...-.....|++.|.+.+|+.+..  .+.|...++............-.....|++
T Consensus        99 y~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glal  178 (619)
T 3s94_A           99 YWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTL  178 (619)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEE
Confidence             45556789999998755433333334456778999998777766554  467777777644333333333456788999


Q ss_pred             eCC-CeEEEEe-CCCcEEEEecCCCeeeEEec-CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          313 LRK-ERVLTVG-RDRSMQLWKVPEESRLVFRA-PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       313 ~~~-~~~~~~~-~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      .+. ++|+.+. ..+.|..+++.......+.. .......+++..+..+++-...+.|...|..+++....+..
T Consensus       179 d~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~  252 (619)
T 3s94_A          179 DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHS  252 (619)
T ss_dssp             ETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCS
T ss_pred             EccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEec
Confidence            875 5666544 56789999987655443222 22233456666663455666788999999888876665543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.44  E-value=0.00091  Score=60.96  Aligned_cols=225  Identities=8%  Similarity=-0.060  Sum_probs=135.6

Q ss_pred             eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 010296          173 KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA-SGGLDRHIHLWDTRI  251 (513)
Q Consensus       173 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~  251 (513)
                      +|+.+.. ..|+..++.+......+                    .....+..++|++.+..|+ +-...+.|..+++..
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~--------------------~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g   61 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLI--------------------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR   61 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEE--------------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             EEEEECC-CeEEEEECCCcceEehh--------------------cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCC
Confidence            3444443 56888888876543322                    1234578999998665554 445568999999875


Q ss_pred             ----cceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-CCeEEEEeCC-
Q 010296          252 ----QEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-KERVLTVGRD-  324 (513)
Q Consensus       252 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d-  324 (513)
                          ......+.........+++.+.+..|+ +-...+.|.++++........+.........+++.| .+.++.+... 
T Consensus        62 ~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~  141 (316)
T 1ijq_A           62 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  141 (316)
T ss_dssp             ------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             CCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence                222222332334567899987665555 445678999999876543333333445678999998 5666655543 


Q ss_pred             -CcEEEEecCCCeeeEE-ecCCCCeeEEEeecCC-eE-EEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCc
Q 010296          325 -RSMQLWKVPEESRLVF-RAPASSLECCCFISND-EF-LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGK  400 (513)
Q Consensus       325 -~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~-~~-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (513)
                       +.|..+++.......+ .........+++.+.+ .| ++-...+.|..+++..... ..+.....              
T Consensus       142 ~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~--------------  206 (316)
T 1ijq_A          142 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEK--------------  206 (316)
T ss_dssp             SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTT--------------
T ss_pred             CCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCC--------------
Confidence             6888888865544333 2334567789999754 54 4555677899999875332 22211100              


Q ss_pred             cccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          401 ISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       401 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                          .......+++. .+.++++-...+.|..++..++
T Consensus       207 --------------------~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          207 --------------------RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             --------------------TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             --------------------ccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence                                00115667775 3556666666778888887655

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=0.00011  Score=70.23  Aligned_cols=150  Identities=7%  Similarity=-0.009  Sum_probs=98.3

Q ss_pred             cEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC-C----cEEEEeCCCCc
Q 010296          222 HILALAVSS-DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD-R----TVKIWNAEDRA  295 (513)
Q Consensus       222 ~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~iwd~~~~~  295 (513)
                      ....|+++| ++..|+++...+.|+.+|+..+....... .......|+|++++++|+++... +    .+.+++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            467899998 45566666555889999988766544433 45668899999999977666542 2    2333443 232


Q ss_pred             ee--EEeecccCCeEEEEeeC-CCeEEEEe-CCCcEEEEecCCCeeeE-E-ecCCCCeeEEEeecCCe-E-EEEeCCCCE
Q 010296          296 YI--STLFGHQSEVLTIDCLR-KERVLTVG-RDRSMQLWKVPEESRLV-F-RAPASSLECCCFISNDE-F-LSGSDDGSI  367 (513)
Q Consensus       296 ~~--~~~~~~~~~v~~~~~~~-~~~~~~~~-~d~~i~iwd~~~~~~~~-~-~~~~~~v~~~~~~~~~~-~-~~~~~dg~i  367 (513)
                      ..  ..+. .......+++.| ++.++++. ..+.|..|+........ . .........++++|++. + ++-...+.|
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            22  2222 233457788899 77777655 56889999988765522 2 22224577899999986 4 455567889


Q ss_pred             EEEecCC
Q 010296          368 ELWSLLR  374 (513)
Q Consensus       368 ~iwd~~~  374 (513)
                      ..++...
T Consensus       295 ~~~~~d~  301 (430)
T 3tc9_A          295 LRSDYDW  301 (430)
T ss_dssp             EEEEEET
T ss_pred             EEEeCCc
Confidence            9887653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.41  E-value=0.00087  Score=63.30  Aligned_cols=208  Identities=11%  Similarity=0.013  Sum_probs=134.8

Q ss_pred             ccCCCeEEEEECCCCCeEEEE-eCCceEEEEeCCCCcc---ccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-
Q 010296          157 KHRQSVTAVALSEDDSKGFSA-SKDGSILHWDVSSGKG---VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-  231 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~-~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-  231 (513)
                      .....+..|+|++....|+.. ...+.|+.+++.....   ...+                  ..........|++.+. 
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~------------------~~~~~~~p~glavD~~~  170 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------------------ISRDIQAPDGLAVDWIH  170 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEE------------------ECSSCSCEEEEEEETTT
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEE------------------EeCCCCCcccEEEEecC
Confidence            345678999999876666544 4568898888875321   1111                  1112345778999884 


Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEEeecccCCeEE
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYISTLFGHQSEVLT  309 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~  309 (513)
                      +++.++-...+.|.+.++........+.........|++.|.+.+|+.+..  .+.|...++........+...-.....
T Consensus       171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~g  250 (400)
T 3p5b_L          171 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  250 (400)
T ss_dssp             TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEE
Confidence            555555556789999998766544444434456789999997777776553  478999988654433333333456789


Q ss_pred             EEeeCC-CeEEEEe-CCCcEEEEecCCCeeeEEec---CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEee
Q 010296          310 IDCLRK-ERVLTVG-RDRSMQLWKVPEESRLVFRA---PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       310 ~~~~~~-~~~~~~~-~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      |++.+. ++|+.+. ..+.|..+++.......+..   .......+++..+..+++-...+.|..++..+++.+..+.
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          251 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            999974 5666554 56789999987655443322   2344567777544446677778899999988887777665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.40  E-value=0.00046  Score=63.94  Aligned_cols=245  Identities=10%  Similarity=0.014  Sum_probs=124.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-eeeecc---CcCCCeEEEEEecC---CCeEEEEeC----C----CcE
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQE-HIQAFP---GHRGPVSCLTFRQG---TSELFSGSF----D----RTV  286 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g~i  286 (513)
                      ....|+|.|+|+++++ ...|.|++++. .+. .+..+.   ........|+|+|+   +..|+++..    +    ..|
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            4788999999985554 55699999973 444 222221   12356889999997   556655443    2    567


Q ss_pred             EEEeCCCC--c-----ee-EEeec-ccCCeEEEEeeCCCeEEEEeCC--------------CcEEEEecCCC--------
Q 010296          287 KIWNAEDR--A-----YI-STLFG-HQSEVLTIDCLRKERVLTVGRD--------------RSMQLWKVPEE--------  335 (513)
Q Consensus       287 ~iwd~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~d--------------~~i~iwd~~~~--------  335 (513)
                      ..|++...  .     .+ ..+.. .......|.|.|++.|+.+..+              +.|..++....        
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            78877653  1     11 11221 1113467899999987755322              45555555432        


Q ss_pred             eeeEEecCCCCeeEEEeec-CCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCC
Q 010296          336 SRLVFRAPASSLECCCFIS-NDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPG  414 (513)
Q Consensus       336 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  414 (513)
                      ....+.........++|.| .+.|.++.....-       ...+..+......  ........       ....+...+.
T Consensus       188 ~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~-------~dei~~i~~G~ny--Gwp~~~g~-------~~~~~~~~p~  251 (354)
T 3a9g_A          188 NSPIWSYGHRNPQGIDWHRASGVMVATEHGPVG-------HDEVNIILKGGNY--GWPLATGK-------AGRGEFVDPV  251 (354)
T ss_dssp             TCCEEEECCSCCCEEEECTTTCCEEEEECCSSS-------CCEEEEECTTCBC--CTTTCCSC-------CCCTTSCCCS
T ss_pred             CCcEEEEccCCcceEEEeCCCCCEEEEecCCCC-------CcEEEEecCCCcC--CCCcccCC-------CCCCCCcCCE
Confidence            0111111223345677887 5665544332210       1122222111000  00000000       0000000000


Q ss_pred             CcCCCCCcceEEEEEEe-------cCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC-cccEEEEEEeecCCCEEEEE
Q 010296          415 SYHSSSAYSWVSSVTVC-------GGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       415 ~~~~~~~~~~i~~~~~s-------~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~  485 (513)
                       +...........++|.       .+|.++++.-..+.|...++............+. ....+..|++.|||.++++.
T Consensus       252 -~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          252 -IDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             -EECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             -eecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence             0000112347788883       5677777777778898888875422211111111 24578999999999877766

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.39  E-value=0.00025  Score=64.60  Aligned_cols=206  Identities=6%  Similarity=-0.027  Sum_probs=132.6

Q ss_pred             CCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CCEEEE
Q 010296          160 QSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GRYLAS  237 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s  237 (513)
                      ..+.+|+|++....|+ +-...+.|..+++.+......+                  ..........+++.+. +.++++
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~------------------~~~~l~~p~glavd~~~g~ly~~   96 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV------------------VVSGLLSPDGLACDWLGEKLYWT   96 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE------------------EEECCSCCCEEEEETTTTEEEEE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE------------------EcCCCCCccEEEEEcCCCeEEEE
Confidence            4567899998655554 5556788999998765321111                  0011223567888874 445555


Q ss_pred             EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEEeecccCCeEEEEeeC-
Q 010296          238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-  314 (513)
Q Consensus       238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-  314 (513)
                      -...+.|.++++........+.........+++.|.+..|+.+..  .+.|...++........+...-.....+++.+ 
T Consensus        97 d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~  176 (318)
T 3sov_A           97 DSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE  176 (318)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETT
T ss_pred             ECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEecc
Confidence            556788999998754433333344456789999997777776653  57888888864332222222334568999998 


Q ss_pred             CCeEEEEe-CCCcEEEEecCCCeeeEE-ecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          315 KERVLTVG-RDRSMQLWKVPEESRLVF-RAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       315 ~~~~~~~~-~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      .++++.+. ..+.|..+++.......+ .........+++..++.+++-...+.|..++..+++....+..
T Consensus       177 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          177 EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence            45666554 568899999875444333 2244556677776555566777788999999988877666653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.34  E-value=0.0012  Score=57.51  Aligned_cols=202  Identities=9%  Similarity=0.083  Sum_probs=128.7

Q ss_pred             CCcccEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296          218 KQSKHILALAVSSDGRYL-ASGGLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      +-...+..++|+|++..| ++...++.|...|+. ++.+..+.- -......|++.+++.++++.-.++.+.++++....
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            344569999999976654 457778899999987 887777642 23568889999888776776677889999876544


Q ss_pred             e---eEEee------cccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCC----CeeeEEe-------cCCCCeeEEEeec
Q 010296          296 Y---ISTLF------GHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPE----ESRLVFR-------APASSLECCCFIS  354 (513)
Q Consensus       296 ~---~~~~~------~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~----~~~~~~~-------~~~~~v~~~~~~~  354 (513)
                      .   +....      ......-.++|.|.+ +|+++.......+|.+..    .......       .....+..+++.|
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp  182 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ  182 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence            2   22221      123345899999976 777666554445555431    1111111       1234567889998


Q ss_pred             CC-e-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec
Q 010296          355 ND-E-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG  432 (513)
Q Consensus       355 ~~-~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  432 (513)
                      .. + ++.......|.++|.. ++++..+........ +                           .......-.|+|.+
T Consensus       183 ~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~-l---------------------------~~~~~qpEGia~d~  233 (255)
T 3qqz_A          183 QKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRG-L---------------------------SHNIKQAEGVAMDA  233 (255)
T ss_dssp             TTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGG-C---------------------------SSCCCSEEEEEECT
T ss_pred             CCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCC-c---------------------------ccccCCCCeeEECC
Confidence            65 4 5677778889999965 556666654321100 0                           00112278899999


Q ss_pred             CCCEEEEecCCCcEEEEE
Q 010296          433 GSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       433 ~~~~l~~g~~dg~v~vwd  450 (513)
                      +|++.++ ++-+.++++.
T Consensus       234 ~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          234 SGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             TCCEEEE-ETTTEEEEEE
T ss_pred             CCCEEEE-cCCceEEEEE
Confidence            9985555 6666666664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.34  E-value=0.00031  Score=66.08  Aligned_cols=206  Identities=9%  Similarity=-0.012  Sum_probs=132.6

Q ss_pred             CCCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE-EE
Q 010296          159 RQSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY-LA  236 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~  236 (513)
                      ...+..++|++....|+ +-...+.|..+++.+......+                   .........|++.+.+.. ++
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-------------------~~~~~~p~glavd~~~g~lY~  175 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-------------------STGLESPGGLAVDWVHDKLYW  175 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-------------------CSSCSCCCCEEEETTTTEEEE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-------------------eCCCCCccEEEEEeCCCeEEE
Confidence            45578899998665555 4456788999998765432221                   011123456888875544 45


Q ss_pred             EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-C-CcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-D-RTVKIWNAEDRAYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  314 (513)
                      +-...+.|.+.++........+.........|++.|.+..|+.+.. . +.|..+++............-.....|++.+
T Consensus       176 ~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~  255 (386)
T 3v65_B          176 TDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDY  255 (386)
T ss_dssp             EETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEG
T ss_pred             EcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeC
Confidence            5555678999888755433334434456789999997777765544 3 6788888865433333333344578999996


Q ss_pred             -CCeEEEEe-CCCcEEEEecCCCeeeE-EecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          315 -KERVLTVG-RDRSMQLWKVPEESRLV-FRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       315 -~~~~~~~~-~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                       .++|+.+. ..+.|..+++....... ..........+++..+..+++-...+.|..++..+++.+..+..
T Consensus       256 ~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          256 AGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             GGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence             45666544 56789999987654333 33334456778884443466777788899999777877777654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.33  E-value=0.00059  Score=63.18  Aligned_cols=206  Identities=9%  Similarity=-0.009  Sum_probs=131.7

Q ss_pred             CCCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC-EEE
Q 010296          159 RQSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR-YLA  236 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~  236 (513)
                      ...+..++|++....|+ +-...+.|..+++.+......+                   .........+++.+.+. +++
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-------------------~~~~~~p~glavd~~~g~ly~  132 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-------------------STGLESPGGLAVDWVHDKLYW  132 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------CSSCSCCCEEEEETTTTEEEE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-------------------eCCCCCccEEEEecCCCeEEE
Confidence            34578999998666665 4456788999998765433211                   11122356788887554 445


Q ss_pred             EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-C-CcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-D-RTVKIWNAEDRAYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  314 (513)
                      +-...+.|.+.++........+.........+++.|.+..|+.+.. . +.|..+++........+...-.....+++.+
T Consensus       133 ~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~  212 (349)
T 3v64_C          133 TDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDY  212 (349)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEET
T ss_pred             EcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeC
Confidence            5556788999998755433333334456789999997776665543 4 7788888865433222222344578999997


Q ss_pred             -CCeEEEEe-CCCcEEEEecCCCeeeE-EecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          315 -KERVLTVG-RDRSMQLWKVPEESRLV-FRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       315 -~~~~~~~~-~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                       .++++.+. ..+.|..+++....... ..........+++..+..+++-...+.|..++..+++.+..+..
T Consensus       213 ~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  284 (349)
T 3v64_C          213 AGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRN  284 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence             45666544 56789999987654333 33334556777774433456666788898888777777666653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.31  E-value=0.00036  Score=66.62  Aligned_cols=249  Identities=11%  Similarity=0.026  Sum_probs=139.9

Q ss_pred             ccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC-----cEEEEeCCC
Q 010296          221 KHILALAVSSD--GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR-----TVKIWNAED  293 (513)
Q Consensus       221 ~~v~~~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~  293 (513)
                      .....|+|+|+  ...|+.+...+.|+.+++.++....... .......++|+++++ |+.+...+     .+...+...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            34678999984  4445555444899999998777655443 455689999999999 55444322     233333322


Q ss_pred             Cce-eEEeecccCCeEEEEeeC-CCeEEEEe-CCCcEEEEecCCCee-eE-Ee-cCCCCeeEEEeecCCe-E-EEEeCCC
Q 010296          294 RAY-ISTLFGHQSEVLTIDCLR-KERVLTVG-RDRSMQLWKVPEESR-LV-FR-APASSLECCCFISNDE-F-LSGSDDG  365 (513)
Q Consensus       294 ~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~-~d~~i~iwd~~~~~~-~~-~~-~~~~~v~~~~~~~~~~-~-~~~~~dg  365 (513)
                      +.. ...+. .......+++.| ++.++.+. .++.|+.++..++.. .. .. ........++++|++. | ++-...+
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            211 11121 234456788888 77777665 567899999876654 22 21 2222334699999985 4 4555678


Q ss_pred             CEEEEecCC--CCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE---------ec
Q 010296          366 SIELWSLLR--KKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV---------CG  432 (513)
Q Consensus       366 ~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------s~  432 (513)
                      .|+.+++..  +..  ...+......    ..+. + +.                ...........+++         .+
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~----~g~~-d-g~----------------~~~a~~~~P~giav~~n~~y~~dd~  353 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSS----PGWV-D-GM----------------GTGARLWGPNQGIFVKNEAYAGEED  353 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTC----CCCB-C-EE----------------GGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCC----CccC-C-Cc----------------ccceEEcCCccEEEEccccccccCC
Confidence            898887653  321  1122111000    0000 0 00                00111123678898         67


Q ss_pred             CCCEEEEecCCCcEEEEEeCCCCcceeeeeecC----------------cccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          433 GSDLAASGAGNGSVRLWAIESETKDIQPLYNLP----------------LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       433 ~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~----------------~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      +|.++++-...+.|+.++. ++  .+..+....                .......|+++|....|+++-...++|+..+
T Consensus       354 ~g~lyvaD~~n~~I~~~~~-~G--~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          354 EYDFYFCDRDSHTVRVLTP-EG--RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             CEEEEEEETTTTEEEEECT-TS--EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             CCcEEEEECCCCEEEEECC-CC--CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence            7777777777888998874 33  222222110                1123678999944444444435666777665


Q ss_pred             c
Q 010296          497 H  497 (513)
Q Consensus       497 ~  497 (513)
                      .
T Consensus       431 ~  431 (433)
T 4hw6_A          431 P  431 (433)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.26  E-value=0.00049  Score=61.63  Aligned_cols=163  Identities=8%  Similarity=0.071  Sum_probs=106.0

Q ss_pred             CcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCCCCceeEEeecc-----c--CCeEEEEe---eCCCeEEEEeC-----
Q 010296          260 GHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAEDRAYISTLFGH-----Q--SEVLTIDC---LRKERVLTVGR-----  323 (513)
Q Consensus       260 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-----~--~~v~~~~~---~~~~~~~~~~~-----  323 (513)
                      .......++.|++....|+.++ ..++|..|+...+.........     .  ..+..|.|   .|+++|+++..     
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            3344556789988766776666 6899999999765443332211     1  13578899   57888876433     


Q ss_pred             ---------CCcEEEEecC---CCeeeEEec--------------CCCCeeEEEeecCCe-EEEEeCC-CCEEEEecCCC
Q 010296          324 ---------DRSMQLWKVP---EESRLVFRA--------------PASSLECCCFISNDE-FLSGSDD-GSIELWSLLRK  375 (513)
Q Consensus       324 ---------d~~i~iwd~~---~~~~~~~~~--------------~~~~v~~~~~~~~~~-~~~~~~d-g~i~iwd~~~~  375 (513)
                               +..|..||+.   +++......              .......++..++|. +++++.. +.|..++....
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                     5779999998   665543221              112467888889886 6677777 77777775543


Q ss_pred             CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                       .+..+....+.                               .......+.|+++|+|++|++....|.|..+|+...
T Consensus       170 -~~~~~~~~~~~-------------------------------~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          170 -TVSTFAWESGN-------------------------------GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             -CEEEEEECCCC-------------------------------SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             -EEeeeeecCCC-------------------------------cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence             33322211110                               001112778999999998888877999999998853

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.25  E-value=0.0051  Score=66.04  Aligned_cols=184  Identities=13%  Similarity=0.061  Sum_probs=97.7

Q ss_pred             CCCeEEEEECCC------CCeEEEEeC-CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          159 RQSVTAVALSED------DSKGFSASK-DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       159 ~~~V~~~~~s~~------~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      ...|.|+++.|.      +.+++.|.. |++|+|+++.+.+.+...     .+..          ..-...|.-+.+ ..
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~-----~L~~----------~~~p~si~l~~~-~~  616 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE-----MLGG----------EIIPRSILMTTF-ES  616 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE-----ECCS----------SCCEEEEEEEEE-TT
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE-----ECCC----------CCCCcEEEEEEe-CC
Confidence            567999999863      478999997 999999999875544321     0000          001122333334 23


Q ss_pred             CCEEEEEeCCCcEEEEeC--CCcceeee--ccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296          232 GRYLASGGLDRHIHLWDT--RIQEHIQA--FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV  307 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~--~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  307 (513)
                      ..+|.+|-.||.+..+.+  .++.....  ..-...++.-..|...+..-+.+..+....+|.-. ++.... .-....+
T Consensus       617 ~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v  694 (1158)
T 3ei3_A          617 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEV  694 (1158)
T ss_dssp             EEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCC
T ss_pred             CcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHh
Confidence            468889999998866554  34443321  11123455555555444443333334555555443 332221 1122234


Q ss_pred             EEEE-eeCC---CeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEE
Q 010296          308 LTID-CLRK---ERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSG  361 (513)
Q Consensus       308 ~~~~-~~~~---~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~  361 (513)
                      .+++ |+..   +-++ +..++.++|..+......  ........+..++++|... ++.+
T Consensus       695 ~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~  754 (1158)
T 3ei3_A          695 NYMCPLNSDGYPDSLA-LANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVL  754 (1158)
T ss_dssp             CEEEEECCSSSTTEEE-EECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEE
T ss_pred             ceEeccCcccCCCcEE-EEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEE
Confidence            3333 4321   2344 344566888887543322  2333445677888888654 4433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.24  E-value=0.005  Score=63.21  Aligned_cols=161  Identities=10%  Similarity=-0.088  Sum_probs=103.8

Q ss_pred             cccEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCc----ceeeeccCcCCCeEEEEEecCCCeEEE-EeCCCcEEEEeCCC
Q 010296          220 SKHILALAVSSDGRYL-ASGGLDRHIHLWDTRIQ----EHIQAFPGHRGPVSCLTFRQGTSELFS-GSFDRTVKIWNAED  293 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~  293 (513)
                      ...+..|+|++....| ++-...+.|+.+++...    .....+.........|++.+.+..|+. -...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            4457899999855544 45555678999988753    223333334456778999987766664 45578999999976


Q ss_pred             CceeEEeecccCCeEEEEeeCC-CeEEEEeC--CCcEEEEecCCCeeeEEe-cCCCCeeEEEeecC-CeEE-EEeCCCCE
Q 010296          294 RAYISTLFGHQSEVLTIDCLRK-ERVLTVGR--DRSMQLWKVPEESRLVFR-APASSLECCCFISN-DEFL-SGSDDGSI  367 (513)
Q Consensus       294 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~--d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~-~~~~dg~i  367 (513)
                      ......+.........|++.|. +.|+.+..  .+.|.+.++.......+. ........|++.+. ++|+ +=...+.|
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            5544334434456889999985 66665543  367888888766554433 33456788999854 4544 44556788


Q ss_pred             EEEecCCCCeeEE
Q 010296          368 ELWSLLRKKPVYI  380 (513)
Q Consensus       368 ~iwd~~~~~~~~~  380 (513)
                      ..+++........
T Consensus       583 ~~~d~dG~~~~~v  595 (791)
T 3m0c_C          583 SSIDVNGGNRKTI  595 (791)
T ss_dssp             EEEETTSCSCEEE
T ss_pred             EEEecCCCceEEE
Confidence            8888865544333

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=0.0025  Score=61.12  Aligned_cols=260  Identities=10%  Similarity=0.015  Sum_probs=144.4

Q ss_pred             CeEEEEECC-CCCeEEEE-eCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE-------cCC
Q 010296          161 SVTAVALSE-DDSKGFSA-SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV-------SSD  231 (513)
Q Consensus       161 ~V~~~~~s~-~~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~~  231 (513)
                      ....|+|+| +...|+.+ ...+.|++.|+.++.....+..                ..........|+|       +++
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~----------------~~~~~~~p~~ia~~~~~~~~d~~  203 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI----------------NTIPTNRIRSIAFNKKIEGYADE  203 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC----------------TTSSCSBEEEEEECCCBTTTBCT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc----------------CccccCCCcEEEEeecccccCCC
Confidence            467899999 35545544 4457788889887665432200                0112345899999       999


Q ss_pred             CCEEEEEeCCC-------cEEEEeCCC-ccee-----eeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCC-----
Q 010296          232 GRYLASGGLDR-------HIHLWDTRI-QEHI-----QAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAE-----  292 (513)
Q Consensus       232 ~~~l~s~~~dg-------~i~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~-----  292 (513)
                      +.+|+++...+       .|.+++... +...     ..+.. ......++++|++..|+ +-..++.|..+|+.     
T Consensus       204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~  282 (496)
T 3kya_A          204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKT  282 (496)
T ss_dssp             TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHH
T ss_pred             CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEeccccccc
Confidence            99777766554       266665333 2221     12221 12345788899555555 55567889999987     


Q ss_pred             --CCce-----------eEEe-e-cccCCeEEEEeeCCCe-EEEE-eCCCcEEEEecCC--Cee---eEEecC-------
Q 010296          293 --DRAY-----------ISTL-F-GHQSEVLTIDCLRKER-VLTV-GRDRSMQLWKVPE--ESR---LVFRAP-------  343 (513)
Q Consensus       293 --~~~~-----------~~~~-~-~~~~~v~~~~~~~~~~-~~~~-~~d~~i~iwd~~~--~~~---~~~~~~-------  343 (513)
                        ++..           ...+ . +.....+.|+|+|++. ++.+ ...+.|+.++...  +..   ..+.+.       
T Consensus       283 ~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~  362 (496)
T 3kya_A          283 IKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYR  362 (496)
T ss_dssp             HHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCB
T ss_pred             ccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCccc
Confidence              5543           1121 1 2234568999999986 4444 4567888866543  221   112111       


Q ss_pred             --------CCCee-EEEee-------cCCeEE-EEeCCCCEEEEecCCCCeeEEeecCCCcc--cCCCCcccCcCccccc
Q 010296          344 --------ASSLE-CCCFI-------SNDEFL-SGSDDGSIELWSLLRKKPVYIVKNAHPLL--DGLKNFEQDEGKISNG  404 (513)
Q Consensus       344 --------~~~v~-~~~~~-------~~~~~~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~  404 (513)
                              -.... .++..       +.+.|+ +=..+.+|+.++ .++ .+.++.......  .....+         +
T Consensus       363 DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~---------G  431 (496)
T 3kya_A          363 DDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQW---------G  431 (496)
T ss_dssp             CCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSC---------C
T ss_pred             CCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCcccc---------c
Confidence                    01233 34443       345544 445677888888 455 344443221100  000000         0


Q ss_pred             cCCCCCCCCCCcCCCCCcceEEEEEEecC-CCEEEEecCCCcEEEEEeCCC
Q 010296          405 HSENGNLNPGSYHSSSAYSWVSSVTVCGG-SDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      . ..+.     ............|+++++ |.++++=..+..||.+++...
T Consensus       432 ~-~dG~-----~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          432 T-DDGD-----LREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             C-CCEE-----TTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             c-CCCC-----chhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            0 0000     000122233789999996 777777778889999998765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.20  E-value=0.0069  Score=60.64  Aligned_cols=205  Identities=9%  Similarity=-0.029  Sum_probs=133.4

Q ss_pred             CCCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE-E
Q 010296          159 RQSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL-A  236 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~  236 (513)
                      -..+..|+|++....|+ +-..++.|..+++........+                   .........|++.+.+..| +
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-------------------~~g~~~P~GlAvD~~~~~LY~   96 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-------------------EFGLDYPEGMAVDWLGKNLYW   96 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------CSSCSCCCEEEEETTTTEEEE
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-------------------eCCCCCcceEEEEeCCCEEEE
Confidence            34678999999766666 4456788999998765432211                   0111235678888765544 4


Q ss_pred             EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296          237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  314 (513)
                      +-...+.|.+.++........+...-.....|++.|....|+.+..  .+.|...++...... .+...-.....|++.+
T Consensus        97 tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~P~GlalD~  175 (628)
T 4a0p_A           97 ADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDY  175 (628)
T ss_dssp             EETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSCSSEEEEEEET
T ss_pred             EECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECCCCCcceEEEcc
Confidence            5455688999998755433233234456789999997667776553  567888887654433 3333455678999998


Q ss_pred             C-CeEEEEe-CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          315 K-ERVLTVG-RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       315 ~-~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      + ++|+.+. ..+.|..+++.......+.........+++..+..+++-...+.|...|..+++....+..
T Consensus       176 ~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~  246 (628)
T 4a0p_A          176 AKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQG  246 (628)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             ccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEec
Confidence            5 5666544 5678999998765444444444456678877643455666688999999888876666553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.18  E-value=0.0037  Score=56.87  Aligned_cols=219  Identities=10%  Similarity=-0.026  Sum_probs=132.6

Q ss_pred             CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCccee-ee
Q 010296          180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY-LASGGLDRHIHLWDTRIQEHI-QA  257 (513)
Q Consensus       180 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~-~~  257 (513)
                      ...|+..++........+                  .......+..++|++.... +++-...+.|..+++..+... ..
T Consensus        12 ~~~I~~i~l~~~~~~~~~------------------~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~   73 (318)
T 3sov_A           12 RRDLRLVDATNGKENATI------------------VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV   73 (318)
T ss_dssp             EEEEEEEETTCTTSCCEE------------------EEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE
T ss_pred             cCeEEEEECCCCceEEEE------------------EecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE
Confidence            467888898765421111                  0112334778999985444 445556788999998766321 12


Q ss_pred             ccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC-CeEEEEeC--CCcEEEEecC
Q 010296          258 FPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTVGR--DRSMQLWKVP  333 (513)
Q Consensus       258 ~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~--d~~i~iwd~~  333 (513)
                      +.........+++.+.+..|+ +-...+.|.++++........+.........+++.|. +.++.+..  .+.|..+++.
T Consensus        74 ~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  153 (318)
T 3sov_A           74 VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  153 (318)
T ss_dssp             EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred             EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence            222234567899987555555 4456788999998764433333344556789999884 66665553  5788888887


Q ss_pred             CCeeeEE-ecCCCCeeEEEeecC-CeE-EEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCC
Q 010296          334 EESRLVF-RAPASSLECCCFISN-DEF-LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN  410 (513)
Q Consensus       334 ~~~~~~~-~~~~~~v~~~~~~~~-~~~-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  410 (513)
                      ......+ .........+++++. +.| ++=+..+.|..+++........+...                          
T Consensus       154 G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--------------------------  207 (318)
T 3sov_A          154 GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--------------------------  207 (318)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC--------------------------
T ss_pred             CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC--------------------------
Confidence            5443333 233456678999984 454 45566788999998653322222100                          


Q ss_pred             CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          411 LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       411 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                 ......+++.. +.++.+-...+.|..++..++
T Consensus       208 -----------~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          208 -----------LPHPFALTLFE-DILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             -----------CSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             -----------CCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence                       01155666653 345556566778888887665

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.18  E-value=0.0013  Score=60.92  Aligned_cols=260  Identities=11%  Similarity=0.031  Sum_probs=128.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCccee---eec----cCcCCCeEEEEEecC---CCeEEEEeC--------C
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI---QAF----PGHRGPVSCLTFRQG---TSELFSGSF--------D  283 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~----~~~~~~v~~~~~~~~---~~~l~~~~~--------d  283 (513)
                      ..+.|+|.|+|++|+++...|.|++++.. +...   ..+    .........|+|+|+   +..|+.+..        .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            47899999999834445567999999853 3321   111    112346789999996   555554432        2


Q ss_pred             CcEEEEeCCCC--c--eeEE-eec------ccCCeEEEEeeCCCeEEEEeCC--------------CcEEEEecCCC---
Q 010296          284 RTVKIWNAEDR--A--YIST-LFG------HQSEVLTIDCLRKERVLTVGRD--------------RSMQLWKVPEE---  335 (513)
Q Consensus       284 g~i~iwd~~~~--~--~~~~-~~~------~~~~v~~~~~~~~~~~~~~~~d--------------~~i~iwd~~~~---  335 (513)
                      ..|..|++...  .  .... +..      .......|.|.|++.|+.+..+              +.|.-++....   
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35666666432  1  1111 111      1112457999999987755432              45666665432   


Q ss_pred             ----------eeeEEecCCCCeeEEEeec-CCeEEEEeCCC--CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccc
Q 010296          336 ----------SRLVFRAPASSLECCCFIS-NDEFLSGSDDG--SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKIS  402 (513)
Q Consensus       336 ----------~~~~~~~~~~~v~~~~~~~-~~~~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  402 (513)
                                ....+.........++|.| .+.|.++....  .=.|.-+..+...     ..+....-..+  ....+.
T Consensus       178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~ny-----Gwp~~~~~~~~--~~~~~~  250 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNY-----GWPLATWGINY--SGFKIP  250 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBC-----CTTTBCSSBCT--TSSCCT
T ss_pred             CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcC-----CCCCccCCCCC--CCCccC
Confidence                      1112222234467788888 67765543321  1122222111100     00000000000  000000


Q ss_pred             cc--cCCCCCCCCCCcCCCCCcceEEEEEEec-------CCCEEEEecCCCcEEEEEeCCCCcceeeeeec-CcccEEEE
Q 010296          403 NG--HSENGNLNPGSYHSSSAYSWVSSVTVCG-------GSDLAASGAGNGSVRLWAIESETKDIQPLYNL-PLVGFVNS  472 (513)
Q Consensus       403 ~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~-------~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~v~~  472 (513)
                      ..  ....+...+. +. ..+...+..++|..       +|.++++.-..+.|...++..+ ........+ .....+..
T Consensus       251 ~~~~~~~~~~~~P~-~~-~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~rp~~  327 (353)
T 2g8s_A          251 EAKGEIVAGTEQPV-FY-WKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD-KVTEDGRILTDRGQRIRD  327 (353)
T ss_dssp             TCCBSSCTTSCCCS-EE-ESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT-EEEEEEEESGGGCCCEEE
T ss_pred             cccCCCCCCccCCe-EE-eCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC-eEeeeEEcccCCCCceeE
Confidence            00  0000001000 00 11123477888864       4678887777888888888754 222211111 12357899


Q ss_pred             EEeecCCCEEEEEecCCCcc
Q 010296          473 LAFAKSGQFLIAGVGQEPRL  492 (513)
Q Consensus       473 v~~sp~~~~l~~~~~~dg~v  492 (513)
                      |++.|||.++++.-..+|+|
T Consensus       328 v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          328 VRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             EEECTTSCEEEEECSTTEEE
T ss_pred             EEECCCCcEEEEEeCCCCEE
Confidence            99999999777652344443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.17  E-value=0.0013  Score=67.48  Aligned_cols=209  Identities=11%  Similarity=0.026  Sum_probs=131.9

Q ss_pred             ccCCCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCcc---ccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          157 KHRQSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKG---VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      .....+.+|+|++....|+ +-...+.|+.+++.....   ...+                  +.........|++.+.+
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v------------------i~~~l~~P~GLAvD~~~  482 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------------------ISRDIQAPDGLAVDWIH  482 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE------------------ECSSCSCCCEEEEETTT
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE------------------EecCCCCcceeeeeecC
Confidence            3455678899988655555 545567888888875321   1111                  11123345678898876


Q ss_pred             CEEE-EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEEeecccCCeEE
Q 010296          233 RYLA-SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYISTLFGHQSEVLT  309 (513)
Q Consensus       233 ~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~  309 (513)
                      ..|+ +-...+.|.+.++........+.........|++.|...+|+.+..  .+.|.+.++........+...-.....
T Consensus       483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~G  562 (791)
T 3m0c_C          483 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  562 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred             CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceE
Confidence            5444 5556789999998755544444334456889999998777776653  367888888655443333334456789


Q ss_pred             EEeeC-CCeEEEEe-CCCcEEEEecCCCeeeEEec---CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          310 IDCLR-KERVLTVG-RDRSMQLWKVPEESRLVFRA---PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       310 ~~~~~-~~~~~~~~-~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      |++.+ .++|+.+. ..+.|..+++.......+..   .......|++..+..+++-...+.|...+..+++.+..+..
T Consensus       563 LavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~  641 (791)
T 3m0c_C          563 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE  641 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             EEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence            99986 45666554 46789999987655543332   12345567765543455666778898888888877776653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.13  E-value=0.00065  Score=61.45  Aligned_cols=185  Identities=9%  Similarity=0.144  Sum_probs=116.0

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC----Ce---EE-EEe-C--CCcEEEEecC--CCeeeE
Q 010296          273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK----ER---VL-TVG-R--DRSMQLWKVP--EESRLV  339 (513)
Q Consensus       273 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~~-~~~-~--d~~i~iwd~~--~~~~~~  339 (513)
                      ...+++.....+.|.+||+ +++.+..+..  +.++.+..-|+    +.   ++ +.. .  +++|.+|++.  +.....
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3455666667789999999 8888887753  56777766653    21   33 333 3  5789999773  333222


Q ss_pred             Eec------CC-CCeeEEEe--ecC-Ce--EEEEeCCCCEEEEecC---C----CCeeEEeecCCCcccCCCCcccCcCc
Q 010296          340 FRA------PA-SSLECCCF--ISN-DE--FLSGSDDGSIELWSLL---R----KKPVYIVKNAHPLLDGLKNFEQDEGK  400 (513)
Q Consensus       340 ~~~------~~-~~v~~~~~--~~~-~~--~~~~~~dg~i~iwd~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (513)
                      ...      .. ..+..+|+  ++. +.  +++...+|.+..|++.   .    .+.+.++....               
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs---------------  180 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS---------------  180 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS---------------
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC---------------
Confidence            211      11 45556666  553 42  5678888999999883   2    34455554322               


Q ss_pred             cccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC-cceeeeeec--Cc-ccEEEEEEe-
Q 010296          401 ISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET-KDIQPLYNL--PL-VGFVNSLAF-  475 (513)
Q Consensus       401 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~-~~~~~~~~~--~~-~~~v~~v~~-  475 (513)
                                             .+-.+...+....|+.+-++.-|..++..... .....+...  .+ ...+..|++ 
T Consensus       181 -----------------------q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~  237 (355)
T 3amr_A          181 -----------------------QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIY  237 (355)
T ss_dssp             -----------------------CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEE
T ss_pred             -----------------------CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEE
Confidence                                   27888999988899999988656555544221 111222222  12 235788888 


Q ss_pred             -ecCCC-EEEEEecCCCcccccccC
Q 010296          476 -AKSGQ-FLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       476 -sp~~~-~l~~~~~~dg~v~~W~~~  498 (513)
                       .++++ ||++++-.+.++.+|+..
T Consensus       238 ~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          238 YAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             ECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             ecCCCCEEEEEEcCCCCEEEEEECC
Confidence             56666 788886567799999886

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.05  E-value=0.0057  Score=58.64  Aligned_cols=253  Identities=9%  Similarity=-0.049  Sum_probs=143.7

Q ss_pred             cEEEEEEcCC-CCEEEEE-eCCCcEEEEeCCCcceeeeccCc---CCCeEEEEE-------ecCCCeEEEEeCCC-----
Q 010296          222 HILALAVSSD-GRYLASG-GLDRHIHLWDTRIQEHIQAFPGH---RGPVSCLTF-------RQGTSELFSGSFDR-----  284 (513)
Q Consensus       222 ~v~~~~~s~~-~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg-----  284 (513)
                      ....|+|+|. ...|+.+ ...+.|++.|+..+.+...+...   ......|+|       ++++.+|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            5788999983 4444444 44467999998887765544332   235789999       99999777766554     


Q ss_pred             --cEEEEeCCC-Ccee-----EEeecccCCeEEEEeeC-CCeEEEEe-CCCcEEEEecC-------CCee----------
Q 010296          285 --TVKIWNAED-RAYI-----STLFGHQSEVLTIDCLR-KERVLTVG-RDRSMQLWKVP-------EESR----------  337 (513)
Q Consensus       285 --~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~-~~~~~~~~-~d~~i~iwd~~-------~~~~----------  337 (513)
                        .|.+++... +...     ..+.. -.....++.+| ++.|+++. ..+.|+.+++.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266665433 2221     22221 22345778888 56666544 67789999987       4432          


Q ss_pred             ----eEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCC--CCe--eEEeecCCCcccCCCCcccCcCccccccCC
Q 010296          338 ----LVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLR--KKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSE  407 (513)
Q Consensus       338 ----~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  407 (513)
                          +...........++|+|++.  +++-+....|+.++...  +..  ...+......    ..+. +          
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~----~G~~-D----------  363 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ----SGYR-D----------  363 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB----CCCB-C----------
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC----Cccc-C----------
Confidence                11122234567899999996  34555677888866533  221  1222211000    0000 0          


Q ss_pred             CCCCCCCCcCCCCCcceEE-EEEEe-------cCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC--------------
Q 010296          408 NGNLNPGSYHSSSAYSWVS-SVTVC-------GGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP--------------  465 (513)
Q Consensus       408 ~~~~~~~~~~~~~~~~~i~-~~~~s-------~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~--------------  465 (513)
                       +.-.      ........ .++..       +++.++++-..++.|+.++ .++  .+..+....              
T Consensus       364 -G~~~------~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G--~v~TiaG~g~~~~~~~~~~~G~~  433 (496)
T 3kya_A          364 -DVGT------EARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG--IVSTYAGRGASTSLADGNQWGTD  433 (496)
T ss_dssp             -CBGG------GCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC--BEEEEEESCTTHHHHHSCSCCCC
T ss_pred             -Cccc------ccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC--CEEEEecccccccccCccccccC
Confidence             0000      01111144 45554       5667777777788899998 343  233332210              


Q ss_pred             --------cccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          466 --------LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       466 --------~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                              .......|++++++..|+++=....+|+.++....
T Consensus       434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence                    01246789999973344445377788998877554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.05  E-value=0.0025  Score=59.03  Aligned_cols=147  Identities=12%  Similarity=0.081  Sum_probs=81.8

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC---CCEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD---GRYL  235 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l  235 (513)
                      -.....|+|.|+|++++ +...|.|.+++  ++... .+       ...    +  ...........|+|+|+   +..|
T Consensus        30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~-~~-------~~~----~--v~~~g~~~p~gia~~pdf~~~g~l   92 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLS-TY-------AEL----S--VYHRGESGLLGLALHPRFPQEPYV   92 (352)
T ss_dssp             CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEE-EE-------EEC----C--CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred             CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCcc-Ee-------ecc----e--EeecCCCCceeEEECCCCCCCCEE
Confidence            34567999999998554 45669999998  33321 11       000    0  01122346889999998   5555


Q ss_pred             EEEeC-C-----CcEEEEeCCCcc-----e-eeecc---CcCCCeEEEEEecCCCeEEEEeC-------------CCcEE
Q 010296          236 ASGGL-D-----RHIHLWDTRIQE-----H-IQAFP---GHRGPVSCLTFRQGTSELFSGSF-------------DRTVK  287 (513)
Q Consensus       236 ~s~~~-d-----g~i~vwd~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~  287 (513)
                      +++.. .     +.|..|++..+.     . +..+.   ........|+|.|+|.+.++.+.             .|.|.
T Consensus        93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~  172 (352)
T 2ism_A           93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKIL  172 (352)
T ss_dssp             EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEE
T ss_pred             EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEE
Confidence            44432 2     568888876431     1 22233   11123468999999976555432             25666


Q ss_pred             EEeCCCC------------ceeEEe-ecccCCeEEEEeeC-CCeEEEEeC
Q 010296          288 IWNAEDR------------AYISTL-FGHQSEVLTIDCLR-KERVLTVGR  323 (513)
Q Consensus       288 iwd~~~~------------~~~~~~-~~~~~~v~~~~~~~-~~~~~~~~~  323 (513)
                      .++....            .....+ .++ .....++|.| ++.++++..
T Consensus       173 ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          173 RLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             EECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE
T ss_pred             EEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc
Confidence            6665431            011111 122 2356788988 677776543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.05  E-value=6e-05  Score=76.77  Aligned_cols=206  Identities=10%  Similarity=0.007  Sum_probs=124.2

Q ss_pred             CCeEEEEECCCCCeEEEE-eCCceEEEEeCCCC---ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CCE
Q 010296          160 QSVTAVALSEDDSKGFSA-SKDGSILHWDVSSG---KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GRY  234 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~-~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~  234 (513)
                      ..+..|+|++.+..|+.+ ...+.|+.+++.+.   .....+                  ..........|++.+. +++
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~------------------i~~~~~~P~glavD~~~g~L  467 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------------------ISRDIQAPDGLAVDWIHSNI  467 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB------------------CCSCC--CCCEECCCSSSBC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE------------------EeCCCCCcceEEEEeeCCcE
Confidence            456788898876666655 34578888887751   111111                  0111122456788754 444


Q ss_pred             EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEEeecccCCeEEEEe
Q 010296          235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYISTLFGHQSEVLTIDC  312 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  312 (513)
                      +++-...+.|.++++........+.........|++.|.+.+|+.+..  .+.|.++++........+...-.....|++
T Consensus       468 Y~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlav  547 (699)
T 1n7d_A          468 YWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL  547 (699)
T ss_dssp             EECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEE
T ss_pred             EEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEE
Confidence            455455688999998765444434333345678899997666665543  267888877543322222222345678999


Q ss_pred             eCC-CeEEEE-eCCCcEEEEecCCCeeeEEec---CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          313 LRK-ERVLTV-GRDRSMQLWKVPEESRLVFRA---PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       313 ~~~-~~~~~~-~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      .++ ++|+.+ ...+.|.++++.......+..   .......+++..+..+++....+.|..++..+++.+..+..
T Consensus       548 d~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          548 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             CTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred             eccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeec
Confidence            975 455544 456789999987654443332   12334456666654566777788999999888887776643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.98  E-value=0.019  Score=57.49  Aligned_cols=158  Identities=9%  Similarity=-0.027  Sum_probs=95.4

Q ss_pred             CCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          160 QSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      .....|++.+.+..|+ +-...+.|.+.++........+                   .........|++.|.+.+|+..
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~-------------------~~~l~~P~~Iavdp~~g~ly~t  144 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-------------------WQELDQPRAIALDPSSGFMYWT  144 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------CSSCSCCCCEEEETTTTEEEEE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEE-------------------eCCCCCCceEEEecCCCeEEEe
Confidence            5688999999655555 5556789999998764432211                   1122336689999976666555


Q ss_pred             eC--CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296          239 GL--DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       239 ~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  315 (513)
                      ..  .+.|...++........+...-...+.|++++++..|+.+. ..+.|..+++........+.+.......|++..+
T Consensus       145 D~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~  224 (619)
T 3s94_A          145 DWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED  224 (619)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS
T ss_pred             ccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC
Confidence            53  35677777664433333333345678999999877777654 4678999998754332222222233456676655


Q ss_pred             CeEE-EEeCCCcEEEEecCCCee
Q 010296          316 ERVL-TVGRDRSMQLWKVPEESR  337 (513)
Q Consensus       316 ~~~~-~~~~d~~i~iwd~~~~~~  337 (513)
                       .++ +-...+.|...|..++..
T Consensus       225 -~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          225 -ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             -EEEEECTTTCSEEEEESSSCCC
T ss_pred             -EEEEecCCCCEEEEEECCCCcc
Confidence             444 444577888888766543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.96  E-value=0.0084  Score=53.72  Aligned_cols=152  Identities=7%  Similarity=0.069  Sum_probs=100.5

Q ss_pred             EEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcceee-eccCc------CCCeEEEEE---ecCCCeEEEEe----------
Q 010296          223 ILALAVSSDGRYLASGG-LDRHIHLWDTRIQEHIQ-AFPGH------RGPVSCLTF---RQGTSELFSGS----------  281 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~-~~~~~------~~~v~~~~~---~~~~~~l~~~~----------  281 (513)
                      .-++.|++....|..++ ..++|..|+...+.... .+..-      ...+..|.|   .|+++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            34689988656666655 78999999987554332 23321      113578999   58866666543          


Q ss_pred             ---CCCcEEEEeCC---CCceeEEee--cc-----------cCCeEEEEeeCCCeEE-EEeCC-CcEEEEecCCCeeeEE
Q 010296          282 ---FDRTVKIWNAE---DRAYISTLF--GH-----------QSEVLTIDCLRKERVL-TVGRD-RSMQLWKVPEESRLVF  340 (513)
Q Consensus       282 ---~dg~i~iwd~~---~~~~~~~~~--~~-----------~~~v~~~~~~~~~~~~-~~~~d-~~i~iwd~~~~~~~~~  340 (513)
                         .+..|..||+.   +++.+....  ..           ...+..++..++|..+ +.+.. +.|..++........+
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~  174 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTF  174 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeee
Confidence               26779999999   777665443  11           1247788888888655 56667 7777777765533322


Q ss_pred             e--c----CCCCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296          341 R--A----PASSLECCCFISNDE-FLSGSDDGSIELWSLLR  374 (513)
Q Consensus       341 ~--~----~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~  374 (513)
                      .  .    .....+.+++.|++. |++....|.|..+|+..
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            1  1    122466899999985 56665599999999873

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.95  E-value=8.1e-05  Score=75.78  Aligned_cols=155  Identities=9%  Similarity=-0.069  Sum_probs=94.3

Q ss_pred             ccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC----cceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCC
Q 010296          221 KHILALAVSSDGRYLASGG-LDRHIHLWDTRI----QEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDR  294 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~  294 (513)
                      ..+..|+|++.+..|+.+. ..+.|+.+++..    ......+.........|++.+.+..|+ +-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            3466789998766666554 457899999875    222222222223456688876555454 4455788999998765


Q ss_pred             ceeEEeecccCCeEEEEeeCC-CeEEEEeC--CCcEEEEecCCCeeeEEe-cCCCCeeEEEeecCC-e-EEEEeCCCCEE
Q 010296          295 AYISTLFGHQSEVLTIDCLRK-ERVLTVGR--DRSMQLWKVPEESRLVFR-APASSLECCCFISND-E-FLSGSDDGSIE  368 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~--d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~-~-~~~~~~dg~i~  368 (513)
                      .....+.........|++.|. +.|+.+..  .+.|.++++.......+. ........|++++.+ . +++-+..+.|.
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            443333323345678888884 55554432  367888887654433332 233456678999764 4 44556677898


Q ss_pred             EEecCCC
Q 010296          369 LWSLLRK  375 (513)
Q Consensus       369 iwd~~~~  375 (513)
                      ++++...
T Consensus       566 ~~d~dG~  572 (699)
T 1n7d_A          566 SIDVNGG  572 (699)
T ss_dssp             EECSSSS
T ss_pred             EEccCCC
Confidence            8888643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.95  E-value=0.021  Score=57.17  Aligned_cols=186  Identities=6%  Similarity=-0.076  Sum_probs=120.6

Q ss_pred             eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 010296          173 KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA-SGGLDRHIHLWDTRI  251 (513)
Q Consensus       173 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~  251 (513)
                      +|+.+ ....|+..++.+......+                  .......+..|+|++....|+ +-...+.|..+++..
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~------------------~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g   68 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAI------------------PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG   68 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEEC------------------CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEE------------------EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC
Confidence            44443 4567888888765432211                  112234588999999665555 445578899999876


Q ss_pred             cceeeeccCcCCCeEEEEEecCCCeEEEE-eCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-CCeEEEEeC--CCcE
Q 010296          252 QEHIQAFPGHRGPVSCLTFRQGTSELFSG-SFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-KERVLTVGR--DRSM  327 (513)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~--d~~i  327 (513)
                      ......+.........|++.+.+..|+.+ ...+.|.+.++........+...-.....|++.| .+.++.+..  .+.|
T Consensus        69 ~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I  148 (628)
T 4a0p_A           69 SALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKI  148 (628)
T ss_dssp             CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEE
Confidence            54443343333457789998876666544 4567899999876543333323445678999998 567765553  5678


Q ss_pred             EEEecCCCeeeEEecCCCCeeEEEeecC-CeE-EEEeCCCCEEEEecCCCCe
Q 010296          328 QLWKVPEESRLVFRAPASSLECCCFISN-DEF-LSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~-~~~~~dg~i~iwd~~~~~~  377 (513)
                      ...++.......+.........+++.+. ++| ++-...+.|..+++.....
T Consensus       149 ~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~  200 (628)
T 4a0p_A          149 DRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR  200 (628)
T ss_dssp             EEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence            8888876655544445567788999985 454 4556678899999866443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.94  E-value=0.0037  Score=56.57  Aligned_cols=191  Identities=11%  Similarity=0.143  Sum_probs=119.4

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC----CC---EEEEEe-C-
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD----GR---YLASGG-L-  240 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~---~l~s~~-~-  240 (513)
                      ...+++.....+-+.+||+ .++.+..+                   .  ...++.+..-|.    |+   ++++.. . 
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~-------------------~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~   96 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSY-------------------N--TGKLNNVDIRYDFPLNGKKVDIAAASNRSE   96 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEE-------------------C--CSCEEEEEEEEEEEETTEEEEEEEEEECST
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEc-------------------c--CCCcccEEEecccccCCceEeEEEEeCCCC
Confidence            4456666677789999999 77777654                   1  134556655552    32   223333 3 


Q ss_pred             -CCcEEEEeC--CCcceeeeccC-------cCCCeEEEEE--ecC-CC-eEEEEeCCCcEEEEeCC-------CCceeEE
Q 010296          241 -DRHIHLWDT--RIQEHIQAFPG-------HRGPVSCLTF--RQG-TS-ELFSGSFDRTVKIWNAE-------DRAYIST  299 (513)
Q Consensus       241 -dg~i~vwd~--~~~~~~~~~~~-------~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~-------~~~~~~~  299 (513)
                       +++|.+|++  .++. +..+..       ....+..+|+  +|. +. ++++...+|.+..|++.       +.+.+++
T Consensus        97 ~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~  175 (355)
T 3amr_A           97 GKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA  175 (355)
T ss_dssp             TCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence             578999966  3433 333321       1145667787  664 43 57788889999999883       3355666


Q ss_pred             eecccCCeEEEEeeC-CCeEEEEeCCCcEEEEecC-----CCeeeEEecCC---CCeeEEEeecC----CeEEEEe-CCC
Q 010296          300 LFGHQSEVLTIDCLR-KERVLTVGRDRSMQLWKVP-----EESRLVFRAPA---SSLECCCFISN----DEFLSGS-DDG  365 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~-----~~~~~~~~~~~---~~v~~~~~~~~----~~~~~~~-~dg  365 (513)
                      +.. .+.+-.+...+ .++++++-.+..|..|+..     +...+......   ..+..+++.+.    +.+++++ .+.
T Consensus       176 f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          176 FKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             EEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             ecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence            653 45677777776 4688888888777777754     22333332222   36777877533    3455444 678


Q ss_pred             CEEEEecC-CCCeeEEeecC
Q 010296          366 SIELWSLL-RKKPVYIVKNA  384 (513)
Q Consensus       366 ~i~iwd~~-~~~~~~~~~~~  384 (513)
                      ++.+||.. +.+.+..+...
T Consensus       255 s~~Vydr~~~~~~vg~f~Ig  274 (355)
T 3amr_A          255 SYAIYDRQGKNKYVADFRIT  274 (355)
T ss_dssp             EEEEEESSTTCCEEEEEEEC
T ss_pred             EEEEEECCCCCcEEEEEEec
Confidence            99999996 67777777643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.79  E-value=0.018  Score=53.23  Aligned_cols=150  Identities=10%  Similarity=0.058  Sum_probs=81.2

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC---CCEEE
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD---GRYLA  236 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~  236 (513)
                      .....|+|.|+|++|+++...|.|++++.. +.....+.       ..    + ............|+|+|+   +.+|.
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~-------~~----~-~v~~~g~~g~~gia~~pdf~~~g~lY   84 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLS-------GV----P-DVWAHGQGGLLDVVLAPDFAQSRRIW   84 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCB-------SC----C-CCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEec-------CC----c-ccccCCCCCceeEEECCCCCCCCEEE
Confidence            456899999999945555667999999853 32211110       00    0 001122345789999995   44444


Q ss_pred             EE-eC-------CCcEEEEeCCCc-------cee-eeccC---cCCCeEEEEEecCCCeEEEEeC-------------CC
Q 010296          237 SG-GL-------DRHIHLWDTRIQ-------EHI-QAFPG---HRGPVSCLTFRQGTSELFSGSF-------------DR  284 (513)
Q Consensus       237 s~-~~-------dg~i~vwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~-------------dg  284 (513)
                      .+ +.       ...|..|++...       +.+ ..+..   .......|+|.|+|.+.++.+.             .|
T Consensus        85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g  164 (353)
T 2g8s_A           85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQG  164 (353)
T ss_dssp             EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTT
T ss_pred             EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCe
Confidence            43 22       235666665432       111 12221   1122457999999965555433             24


Q ss_pred             cEEEEeCCCCc------------eeEEe-ecccCCeEEEEeeC-CCeEEEEeC
Q 010296          285 TVKIWNAEDRA------------YISTL-FGHQSEVLTIDCLR-KERVLTVGR  323 (513)
Q Consensus       285 ~i~iwd~~~~~------------~~~~~-~~~~~~v~~~~~~~-~~~~~~~~~  323 (513)
                      .|.-++....-            ....+ .++ .....++|.| .+.|+++..
T Consensus       165 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~  216 (353)
T 2g8s_A          165 KLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEH  216 (353)
T ss_dssp             EEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEec
Confidence            67777765320            11111 222 3367899999 788876654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.74  E-value=0.011  Score=53.29  Aligned_cols=143  Identities=17%  Similarity=0.213  Sum_probs=75.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCcc---e--eeeccCcCCCeEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCc
Q 010296          231 DGRYLASGGLD-----RHIHLWDTRIQE---H--IQAFPGHRGPVSCLTFRQGTSELFSGSFD-----RTVKIWNAEDRA  295 (513)
Q Consensus       231 ~~~~l~s~~~d-----g~i~vwd~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  295 (513)
                      ++.+++.|+.+     ..+.+||+.+.+   .  +..+........++.+  ++..++.|+.+     ..+.+||+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56777777754     468999988765   2  2222221122222222  56666666643     368899988775


Q ss_pred             eeEEeecccCCe-EEEEeeCCCeEE-EEeCC-----CcEEEEecCCCeeeEEecCCCC--eeEEEeecCCe-EEEEeCC-
Q 010296          296 YISTLFGHQSEV-LTIDCLRKERVL-TVGRD-----RSMQLWKVPEESRLVFRAPASS--LECCCFISNDE-FLSGSDD-  364 (513)
Q Consensus       296 ~~~~~~~~~~~v-~~~~~~~~~~~~-~~~~d-----~~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~-~~~~~~d-  364 (513)
                      ....-....... .++... ++.++ .++.+     ..+.+||+.+..-........+  -.+++.. ++. ++.|+.+ 
T Consensus       140 W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~  217 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGFDG  217 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCS
T ss_pred             EEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCCCC
Confidence            433221111111 122222 55555 55543     5688999887765433221111  1223333 444 5566654 


Q ss_pred             ----CCEEEEecCCCCe
Q 010296          365 ----GSIELWSLLRKKP  377 (513)
Q Consensus       365 ----g~i~iwd~~~~~~  377 (513)
                          ..+.+||+.+.+-
T Consensus       218 ~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          218 TAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             SSBCCCEEEEETTTTEE
T ss_pred             CcccceEEEEeCCCCcE
Confidence                4688888877643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.73  E-value=0.027  Score=51.63  Aligned_cols=193  Identities=12%  Similarity=0.189  Sum_probs=107.3

Q ss_pred             CeEEEEEecCCCeEEEE------------eCCCcEEEEeCCCC--cee-EEeec-----ccCCeEEEEeeC--CC--eEE
Q 010296          264 PVSCLTFRQGTSELFSG------------SFDRTVKIWNAEDR--AYI-STLFG-----HQSEVLTIDCLR--KE--RVL  319 (513)
Q Consensus       264 ~v~~~~~~~~~~~l~~~------------~~dg~i~iwd~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~~--~~~  319 (513)
                      ....+...|+|..++++            ..+|.|.++|+.+.  +.. ..+.+     .......+.+.+  ++  +++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            44566667765444443            26899999999742  221 11222     223566777655  34  455


Q ss_pred             EEeC---CCcEEEEecCCC--eeeE---Ee-cCCCCeeEEEeecCCeEEEEeC------------------CCCEEEEec
Q 010296          320 TVGR---DRSMQLWKVPEE--SRLV---FR-APASSLECCCFISNDEFLSGSD------------------DGSIELWSL  372 (513)
Q Consensus       320 ~~~~---d~~i~iwd~~~~--~~~~---~~-~~~~~v~~~~~~~~~~~~~~~~------------------dg~i~iwd~  372 (513)
                      ++..   +.+|.+|++...  ....   +. ........+.+.++|.|.++..                  .|.|..++.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            5543   466777776543  2221   11 1234577888889998665432                  123333332


Q ss_pred             CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe-cCCCcEEEEEe
Q 010296          373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG-AGNGSVRLWAI  451 (513)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g-~~dg~v~vwd~  451 (513)
                        ++.......                                      ....+.++|||++++|+.+ +..+.|+.|++
T Consensus       211 --~~~~~~~~~--------------------------------------l~~pNGia~spDg~~lYvadt~~~~I~~~~~  250 (355)
T 3sre_A          211 --NDVRVVAEG--------------------------------------FDFANGINISPDGKYVYIAELLAHKIHVYEK  250 (355)
T ss_dssp             --TCCEEEEEE--------------------------------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             --CeEEEeecC--------------------------------------CcccCcceECCCCCEEEEEeCCCCeEEEEEE
Confidence              221111110                                      1127899999999877665 45689999999


Q ss_pred             CCCCcceeeeeecCcccEEEEEEeec-CCCEEEEEecCCCccccccc
Q 010296          452 ESETKDIQPLYNLPLVGFVNSLAFAK-SGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~~dg~v~~W~~  497 (513)
                      .... .+.....+...+..-.+++.+ +|.+.+++.-.-+.|..|+.
T Consensus       251 ~~~g-~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          251 HANW-TLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             CTTS-CEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             CCCC-cEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            7532 222211222356778899999 59987766223345655543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.63  E-value=0.013  Score=52.77  Aligned_cols=142  Identities=15%  Similarity=0.149  Sum_probs=71.9

Q ss_pred             CCCEEEEEe-CC-----CcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCc--
Q 010296          231 DGRYLASGG-LD-----RHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFD-----RTVKIWNAEDRA--  295 (513)
Q Consensus       231 ~~~~l~s~~-~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~--  295 (513)
                      ++.+++.|+ .+     ..+.+||+.+.+...  .+........ ++ ..++..++.|+.+     ..+.+||+.+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVA-SV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCE-EE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcccc-EE-EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            455666666 22     468899988765332  2221111112 22 2356666677654     468999998876  


Q ss_pred             -eeEEeecccCC-eEEEEeeCCCeEE-EEeCC-----CcEEEEecCCCeeeEEecC-CC-CeeEEEeecCCe-EEEEeCC
Q 010296          296 -YISTLFGHQSE-VLTIDCLRKERVL-TVGRD-----RSMQLWKVPEESRLVFRAP-AS-SLECCCFISNDE-FLSGSDD  364 (513)
Q Consensus       296 -~~~~~~~~~~~-v~~~~~~~~~~~~-~~~~d-----~~i~iwd~~~~~~~~~~~~-~~-~v~~~~~~~~~~-~~~~~~d  364 (513)
                       ....-...... -.++... ++.++ .++.+     ..+.+||+.+..-...... .. .-.+++.. ++. ++.|+.+
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~  169 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYD  169 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred             eeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCC
Confidence             33221111111 1122222 55555 55432     4688899887664432211 11 11222333 455 5566654


Q ss_pred             -----CCEEEEecCCCC
Q 010296          365 -----GSIELWSLLRKK  376 (513)
Q Consensus       365 -----g~i~iwd~~~~~  376 (513)
                           ..+.+||+.+.+
T Consensus       170 ~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          170 GLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             SSCBCCCEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCc
Confidence                 457788877664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.56  E-value=0.05  Score=50.17  Aligned_cols=145  Identities=15%  Similarity=0.136  Sum_probs=81.5

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC---CCEEE
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD---GRYLA  236 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~  236 (513)
                      .....|+|.|+|++ +++..+|.|++++. ++.  ..+       ...    +  ...........|+|+|+   +..|+
T Consensus        29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~-~G~--~~~-------~~~----~--v~~~g~~g~~gia~~pdf~~~g~ly   91 (354)
T 3a9g_A           29 EVPWSIAPLGGGRY-LVTERPGRLVLISP-SGK--KLV-------ASF----D--VANVGEAGLLGLALHPEFPKKSWVY   91 (354)
T ss_dssp             SCEEEEEEEETTEE-EEEETTTEEEEECS-SCE--EEE-------EEC----C--CCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred             CCCeEEEEcCCCeE-EEEeCCCEEEEEeC-CCc--eEe-------ecc----c--eeecCCCceeeEEeCCCCCcCCEEE
Confidence            45689999999984 44556699999873 343  111       000    0  01112345889999997   44554


Q ss_pred             EEeC----C----CcEEEEeCCCc-------cee-eeccC-cCCCeEEEEEecCCCeEEEEeC-------------CCcE
Q 010296          237 SGGL----D----RHIHLWDTRIQ-------EHI-QAFPG-HRGPVSCLTFRQGTSELFSGSF-------------DRTV  286 (513)
Q Consensus       237 s~~~----d----g~i~vwd~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~-------------dg~i  286 (513)
                      ++..    +    ..|..|+....       +.+ ..+.. .......|+|.|+|.+.++.+.             .|.|
T Consensus        92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I  171 (354)
T 3a9g_A           92 LYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKI  171 (354)
T ss_dssp             EEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEE
T ss_pred             EEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEE
Confidence            4432    2    56777776543       111 11221 1123467999999986665432             2456


Q ss_pred             EEEeCCCC--------c-eeEEeecccCCeEEEEeeC-CCeEEEEeC
Q 010296          287 KIWNAEDR--------A-YISTLFGHQSEVLTIDCLR-KERVLTVGR  323 (513)
Q Consensus       287 ~iwd~~~~--------~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  323 (513)
                      ..++....        . .+. ..++. ....++|.| .+.++++..
T Consensus       172 ~ri~~dG~~p~~npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          172 LRVDEEGRPPADNPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             EEECTTSCCCTTSSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEEC
T ss_pred             EEEcCCCCCCCCCCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEec
Confidence            66665432        0 111 12232 346889999 677776654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.55  E-value=0.047  Score=49.77  Aligned_cols=251  Identities=11%  Similarity=0.114  Sum_probs=128.8

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce--eeec----cCcCCCeEEEEEecC---CCeEEEE---eCCCcEEE
Q 010296          221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH--IQAF----PGHRGPVSCLTFRQG---TSELFSG---SFDRTVKI  288 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~dg~i~i  288 (513)
                      ...+.|+|.|+|.++++--..|.|++++...+..  +..+    .........|+|+|+   ...|+..   ..++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            3478999999999777765589999998665543  2222    223567899999995   4455443   24556666


Q ss_pred             EeCCCC----------cee-EEeec-ccCCeEEEEeeCCCeEEEE-eC-------------CCcEEEEecCCC-------
Q 010296          289 WNAEDR----------AYI-STLFG-HQSEVLTIDCLRKERVLTV-GR-------------DRSMQLWKVPEE-------  335 (513)
Q Consensus       289 wd~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~~~~-~~-------------d~~i~iwd~~~~-------  335 (513)
                      |.+..+          +.+ ..+.. .......|.|.|++.|+.+ +.             .+.|.-++....       
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            766541          111 11211 1123457899999977644 32             245555554432       


Q ss_pred             -eeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCC
Q 010296          336 -SRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPG  414 (513)
Q Consensus       336 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  414 (513)
                       ....+.........++|.|++.|.++.....       ....+..+......  .   +......    ....+...+.
T Consensus       192 ~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~-------~~deln~i~~G~ny--G---wP~~~g~----~~~~~~~~P~  255 (347)
T 3das_A          192 PGSPVYSYGHRNVQGLAWDDKQRLFASEFGQD-------TWDELNAIKPGDNY--G---WPEAEGK----GGGSGFHDPV  255 (347)
T ss_dssp             TTCCEEEBCCSBCCEEEECTTCCEEEEECCSS-------SCEEEEEECTTCBC--C---TTTCCSS----CCCTTCCCCS
T ss_pred             CCCeEEeeCCCCcceEEECCCCCEEEEecCCC-------CCceeeEEcCCCEe--c---CCcccCC----CCCccccCCc
Confidence             1112222223455677777776554432111       01222222211100  0   0000000    0001111111


Q ss_pred             CcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcce--eeeeecCcccEEEEEEeecCCCEEEEEecCCC
Q 010296          415 SYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDI--QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEP  490 (513)
Q Consensus       415 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg  490 (513)
                      . .-..+......++|. +|.+++..-..+.|....+.......  ..+.. ...+.+..|+..|||.++++....||
T Consensus       256 ~-~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~-~~~gR~~dv~~~pDG~lyv~td~~~g  330 (347)
T 3das_A          256 A-QWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLE-GEYGRLRTVAPAGGDKLWLVTSNTDG  330 (347)
T ss_dssp             E-EECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEEST-TTSSCEEEEEEEETTEEEEEECTTSS
T ss_pred             E-ecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeec-CCCCCccEEEECCCCcEEEEEcCCCC
Confidence            0 001111246677776 45666666666777777776542111  11111 13468999999999998888755665

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.50  E-value=0.023  Score=51.10  Aligned_cols=141  Identities=16%  Similarity=0.243  Sum_probs=69.8

Q ss_pred             CCEEEEEeCC----CcEEEEeCCCcceeee--ccCcCCCeEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCceeEEe
Q 010296          232 GRYLASGGLD----RHIHLWDTRIQEHIQA--FPGHRGPVSCLTFRQGTSELFSGSFD-----RTVKIWNAEDRAYISTL  300 (513)
Q Consensus       232 ~~~l~s~~~d----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~  300 (513)
                      +.+++.|+.+    ..+.+||+.+.+....  +......- +++. -++..++.|+.+     ..+.+||+.+.+....-
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            4455566543    4588899877653322  22111111 2222 256666677654     35889998877543321


Q ss_pred             ecccCC-eEEEEeeCCCeE-EEEeCC-----CcEEEEecCCCeeeEEecCCC--CeeEEEeecCCe-EEEEeCC------
Q 010296          301 FGHQSE-VLTIDCLRKERV-LTVGRD-----RSMQLWKVPEESRLVFRAPAS--SLECCCFISNDE-FLSGSDD------  364 (513)
Q Consensus       301 ~~~~~~-v~~~~~~~~~~~-~~~~~d-----~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d------  364 (513)
                      ...... -.+++.. ++.+ +.++.+     ..+.+||+.+..-........  .-.+++.. ++. ++.|+.+      
T Consensus        94 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~  171 (302)
T 2xn4_A           94 NMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQC  171 (302)
T ss_dssp             CCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEE
T ss_pred             CCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCcc
Confidence            111111 1222222 4444 466644     357788887766443322111  11223333 444 5555532      


Q ss_pred             -CCEEEEecCCCC
Q 010296          365 -GSIELWSLLRKK  376 (513)
Q Consensus       365 -g~i~iwd~~~~~  376 (513)
                       ..+.+||+.+.+
T Consensus       172 ~~~~~~yd~~~~~  184 (302)
T 2xn4_A          172 LSTVECYNATTNE  184 (302)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             ccEEEEEeCCCCc
Confidence             357788877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.49  E-value=0.039  Score=49.75  Aligned_cols=141  Identities=11%  Similarity=0.103  Sum_probs=72.4

Q ss_pred             CCEEEEEeC--CCcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCC----CcEEEEeCCCCceeEEeecc
Q 010296          232 GRYLASGGL--DRHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFD----RTVKIWNAEDRAYISTLFGH  303 (513)
Q Consensus       232 ~~~l~s~~~--dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~  303 (513)
                      +.+++.|+.  ...+.+||..+.+-..  .+.........+.  -++..++.|+.+    ..+.+||+.+.+....-...
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            345556654  3578899988765432  2222111222222  355666677654    67889999887643322111


Q ss_pred             cCCe-EEEEeeCCCeEE-EEeCC------CcEEEEecCCCeeeEEecCCC--CeeEEEeecCCe-EEEEeC---------
Q 010296          304 QSEV-LTIDCLRKERVL-TVGRD------RSMQLWKVPEESRLVFRAPAS--SLECCCFISNDE-FLSGSD---------  363 (513)
Q Consensus       304 ~~~v-~~~~~~~~~~~~-~~~~d------~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~---------  363 (513)
                      .... .++... ++.++ .++.+      ..+.+||+.+..-........  .-.+++. -++. ++.|+.         
T Consensus        90 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           90 TPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             SCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred             ccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence            1111 122222 55554 56544      468899988776443322111  1112222 3455 455543         


Q ss_pred             CCCEEEEecCCCC
Q 010296          364 DGSIELWSLLRKK  376 (513)
Q Consensus       364 dg~i~iwd~~~~~  376 (513)
                      -..+.+||+.+.+
T Consensus       168 ~~~~~~yd~~~~~  180 (306)
T 3ii7_A          168 LNSCEVYDPATET  180 (306)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             cceEEEeCCCCCe
Confidence            3457788887764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.48  E-value=0.13  Score=53.07  Aligned_cols=280  Identities=11%  Similarity=0.041  Sum_probs=155.9

Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL  240 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  240 (513)
                      .|.++.. .++ .|..++.+ -|..|+..++...... .   ...           ......|.++....++.+.+ |+.
T Consensus       104 ~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~-~---~~~-----------~l~~~~i~~i~~d~~g~lWi-gt~  164 (758)
T 3ott_A          104 DVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFD-T---RRN-----------GLPNNTIYSIIRTKDNQIYV-GTY  164 (758)
T ss_dssp             CEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEEC-H---HHH-----------CCSCSCEEEEEECTTCCEEE-EET
T ss_pred             eEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEec-c---CCC-----------CcCCCeEEEEEEcCCCCEEE-EeC
Confidence            4777654 344 46666655 4677887665432210 0   000           01134588888888777554 554


Q ss_pred             CCcEEEEeCCCcceeee-ccC----cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296          241 DRHIHLWDTRIQEHIQA-FPG----HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       241 dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  315 (513)
                      . -|..++..+++.... +..    ....|.++...+++..|..|+. +.|..++..+++...........|.++...++
T Consensus       165 ~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~  242 (758)
T 3ott_A          165 N-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGN  242 (758)
T ss_dssp             T-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTT
T ss_pred             C-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCC
Confidence            4 477888776653321 111    1234888888877776666664 46888998776543221112345788888888


Q ss_pred             CeEEEEeCCCcEEEEecCCCeeeEEec--------CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296          316 ERVLTVGRDRSMQLWKVPEESRLVFRA--------PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPL  387 (513)
Q Consensus       316 ~~~~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (513)
                      +.+..++. +-+.+++..+.....+..        ....|.++....+|.+..|+..| +.++....  ....+......
T Consensus       243 g~lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~--~~~~~~~~~~~  318 (758)
T 3ott_A          243 GDLLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNS--ALQFIPISQIT  318 (758)
T ss_dssp             CCEEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC---CEEEEHHHHS
T ss_pred             CCEEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCC--ceeEEecccCC
Confidence            88888885 468888887655433321        22457888888888888888777 55543221  11111100000


Q ss_pred             ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC-cceeeeee---
Q 010296          388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET-KDIQPLYN---  463 (513)
Q Consensus       388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~-~~~~~~~~---  463 (513)
                                           .         ......|.++....+|.+.+. +.+| +..++..++. ..+..+..   
T Consensus       319 ---------------------~---------~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~~~  366 (758)
T 3ott_A          319 ---------------------G---------TGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMGDK  366 (758)
T ss_dssp             ---------------------C---------SCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTTCS
T ss_pred             ---------------------C---------CCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEeccCCc
Confidence                                 0         001123888888888775554 4455 5556544321 11111110   


Q ss_pred             --cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          464 --LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       464 --~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                        ......|.++.-..+|.+.+.+   ++-|.+|+..++
T Consensus       367 ~~~l~~~~v~~i~~d~~g~lWigt---~~GL~~~~~~~~  402 (758)
T 3ott_A          367 TYPLSHNRIRHIYEDKEQQLWIAT---DGSINRYDYATR  402 (758)
T ss_dssp             SSCCSCSCEEEEEECTTSCEEEEE---TTEEEEEETTTT
T ss_pred             CCCCCCCceEEEEECCCCCEEEEe---CCcHhhcCcCCC
Confidence              0013458888888888765543   245777765443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.47  E-value=0.14  Score=52.96  Aligned_cols=281  Identities=9%  Similarity=0.047  Sum_probs=156.8

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ...|.++....++.+.+ |+..| |..++..++.......+.              ........|.++...+++..|..|
T Consensus       145 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~--------------~~~~~~~~i~~i~~d~~~~~lWig  208 (758)
T 3ott_A          145 NNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPV--------------HSSQSNLFVNSLLEDTTRQCVWIG  208 (758)
T ss_dssp             CSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCC--------------CTTCSSCCEEEEEEETTTTEEEEE
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCC--------------ccccccceeEEEEEECCCCEEEEE
Confidence            35688988888877554 45544 667787665432211000              000112348889888777766666


Q ss_pred             eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee-------cccCCeEEEE
Q 010296          239 GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF-------GHQSEVLTID  311 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~  311 (513)
                      +. +-+..++..+++...........|.++....++.+.+ |+. +-|.+++..++.......       -....|.++.
T Consensus       209 t~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~  285 (758)
T 3ott_A          209 TE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIF  285 (758)
T ss_dssp             EE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEE
T ss_pred             EC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEE
Confidence            64 4588899876654322111234578888777776544 444 458889887665432211       1233588888


Q ss_pred             eeCCCeEEEEeCCCcEEEEecCCCeeeEE------ecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCe--eEEeec
Q 010296          312 CLRKERVLTVGRDRSMQLWKVPEESRLVF------RAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKP--VYIVKN  383 (513)
Q Consensus       312 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~--~~~~~~  383 (513)
                      ...++.+..++..| +.++..........      ......|.++....+|.+..|+..| +..++..+++.  ...+..
T Consensus       286 ~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~  363 (758)
T 3ott_A          286 ADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRM  363 (758)
T ss_dssp             ECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECT
T ss_pred             EcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEecc
Confidence            88888888888766 55543322111111      0123467888888888888888655 66666554321  111211


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                      ....                     .         ......|.++.-..+|.+-+ |+. +-|..|+..++  .+..+..
T Consensus       364 ~~~~---------------------~---------~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~--~~~~~~~  409 (758)
T 3ott_A          364 GDKT---------------------Y---------PLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATR--QFIHYNI  409 (758)
T ss_dssp             TCSS---------------------S---------CCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTT--EEEEEEE
T ss_pred             CCcC---------------------C---------CCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCC--cEEEeec
Confidence            0000                     0         01112388888888887554 443 45888988765  2222221


Q ss_pred             cC-----cccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          464 LP-----LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       464 ~~-----~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      ..     ....|.++...++|.+.+.+  ..+-|.+++
T Consensus       410 ~~~~~~~~~~~v~~i~~d~~g~lWigT--~~~Gl~~~~  445 (758)
T 3ott_A          410 VDNTGTYNTNWTYYIFEDTAGQLWIST--CLGGIFVVD  445 (758)
T ss_dssp             ECCC--CBSSSEEEEEECTTSEEEEEE--SSSCEEEEE
T ss_pred             CCCcCCCCCceEEEEEEcCCCCEEEEE--CCCceEEEc
Confidence            01     12458888887777655533  333455554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.47  E-value=0.068  Score=49.54  Aligned_cols=224  Identities=11%  Similarity=0.137  Sum_probs=134.3

Q ss_pred             CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc
Q 010296          180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP  259 (513)
Q Consensus       180 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  259 (513)
                      ...|.|.|+.++..+..-                      .-.--+.-.+|..+.||.-. ..++.|+|+++...+..+.
T Consensus        47 ~~~vvIiDl~~~~~~~rr----------------------pi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~  103 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRR----------------------PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT  103 (494)
T ss_dssp             CCEEEEEETTSTTSCEEE----------------------ECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEECCCCCcceec----------------------ccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee
Confidence            347888888876543211                      11122455788888777665 6899999999998887776


Q ss_pred             CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC-CceeEEeeccc----CCeEEEEeeCCCeEE--EEe------CCCc
Q 010296          260 GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED-RAYISTLFGHQ----SEVLTIDCLRKERVL--TVG------RDRS  326 (513)
Q Consensus       260 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~~--~~~------~d~~  326 (513)
                      - ...|.--.|-... .|+..+ +..|+-|++.. ..++..+..|.    ..|.....+++.+++  +|-      -.|.
T Consensus       104 ~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~  180 (494)
T 1bpo_A          104 M-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA  180 (494)
T ss_dssp             C-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred             c-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence            4 3456666775543 344443 46899999964 34555555443    356666666766433  222      2478


Q ss_pred             EEEEecCCCeeeEEecCCCCeeEEEeecCC---eEE-EEeC---CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcC
Q 010296          327 MQLWKVPEESRLVFRAPASSLECCCFISND---EFL-SGSD---DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEG  399 (513)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~~-~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                      +.+|....+....+.+|......+.+..+.   .++ .+..   .+.++|.++....          ..  ...|...  
T Consensus       181 mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~----------~~--~~~f~kk--  246 (494)
T 1bpo_A          181 MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP----------TG--NQPFPKK--  246 (494)
T ss_dssp             EEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCC----------TT--CCCCCCE--
T ss_pred             EEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCc----------cC--CCCccce--
Confidence            999999888877777776544444333221   132 2222   2566666663320          00  0000000  


Q ss_pred             ccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          400 KISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       400 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                 .....+..........++.+|+.-.+++.-+.-|.|.+||+.++
T Consensus       247 -----------~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg  290 (494)
T 1bpo_A          247 -----------AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG  290 (494)
T ss_dssp             -----------EEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred             -----------eeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc
Confidence                       00001111233344788999998889999999999999999998

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.37  E-value=0.076  Score=47.78  Aligned_cols=142  Identities=11%  Similarity=0.155  Sum_probs=74.6

Q ss_pred             CCCEEEEEeCC----CcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCC------CcEEEEeCCCCceeE
Q 010296          231 DGRYLASGGLD----RHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFD------RTVKIWNAEDRAYIS  298 (513)
Q Consensus       231 ~~~~l~s~~~d----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~  298 (513)
                      ++.+++.|+.+    ..+.+||+.+.+...  .+.........+.  -++..++.|+.+      ..+.+||+.+.+...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            56677777754    678899988765432  2222111122222  256666777655      468999998875433


Q ss_pred             EeecccCCe-EEEEeeCCCeEE-EEeC---------CCcEEEEecCCCeeeEEecCCC--CeeEEEeecCCe-EEEEeCC
Q 010296          299 TLFGHQSEV-LTIDCLRKERVL-TVGR---------DRSMQLWKVPEESRLVFRAPAS--SLECCCFISNDE-FLSGSDD  364 (513)
Q Consensus       299 ~~~~~~~~v-~~~~~~~~~~~~-~~~~---------d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d  364 (513)
                      .-....... .++... ++.++ .++.         -..+.+||+.+..-........  .-.+++.. +++ ++.|+.+
T Consensus       133 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~  210 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQN  210 (306)
T ss_dssp             ECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEE
T ss_pred             CCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCC
Confidence            211111111 122222 55555 4442         3558899998876543332211  11223333 444 5566543


Q ss_pred             -----CCEEEEecCCCC
Q 010296          365 -----GSIELWSLLRKK  376 (513)
Q Consensus       365 -----g~i~iwd~~~~~  376 (513)
                           ..+.+||+.+.+
T Consensus       211 ~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          211 GLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             TTEEBCCEEEEETTTTE
T ss_pred             CCCCCceEEEeeCCCCc
Confidence                 457788877654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.34  E-value=0.008  Score=50.11  Aligned_cols=137  Identities=11%  Similarity=0.018  Sum_probs=80.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCccee------eecc--CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI------QAFP--GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED  293 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  293 (513)
                      .+..++|+|+|.+.++  .+|.++-.+..+....      ..+-  +... ..++.|.|+|.+.++  .||.|+-++..+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5679999999986666  5787777776542211      1110  1111 478899999976666  569998888644


Q ss_pred             CceeE------Ee-ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-------EEe-cCCCCeeEEEeecCCeE
Q 010296          294 RAYIS------TL-FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-------VFR-APASSLECCCFISNDEF  358 (513)
Q Consensus       294 ~~~~~------~~-~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-------~~~-~~~~~v~~~~~~~~~~~  358 (513)
                      .....      .+ ..-=..+..|.+.|+|.|.++. ++.++-+...+....       .+. ..-.....+.|.+++.|
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l  195 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL  195 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence            22111      11 1112467899999999999888 888655443322110       111 12222334556677765


Q ss_pred             EEEeCCC
Q 010296          359 LSGSDDG  365 (513)
Q Consensus       359 ~~~~~dg  365 (513)
                      .... +|
T Consensus       196 ~~v~-~g  201 (236)
T 1tl2_A          196 FGVQ-GG  201 (236)
T ss_dssp             EEEE-TT
T ss_pred             EEEe-CC
Confidence            5555 55

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.29  E-value=0.11  Score=48.17  Aligned_cols=197  Identities=11%  Similarity=0.127  Sum_probs=123.9

Q ss_pred             EEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCc
Q 010296          164 AVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRH  243 (513)
Q Consensus       164 ~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  243 (513)
                      +.-.+|..+.||.=. ..++.|||+++...+..+                    .....|..=.|-.. +.|+..+ +..
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~--------------------~~~e~VvfWkWis~-~~l~lVT-~ta  126 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH--------------------TMTDDVTFWKWISL-NTVALVT-DNA  126 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE--------------------ECSSCCCEEEEEET-TEEEEEC-SSE
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce--------------------ecCCCceEEEecCC-CeEEEEc-CCe
Confidence            345678888777654 689999999998876644                    22334555666543 3455444 468


Q ss_pred             EEEEeCCC-cceeeeccCcC----CCeEEEEEecCCCeEEEEe-------CCCcEEEEeCCCCceeEEeecccCCeEEEE
Q 010296          244 IHLWDTRI-QEHIQAFPGHR----GPVSCLTFRQGTSELFSGS-------FDRTVKIWNAEDRAYISTLFGHQSEVLTID  311 (513)
Q Consensus       244 i~vwd~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  311 (513)
                      |+-|++.. ..++..|..|.    ..|..-..+++.++++..+       ..|.+.+|....+ ..+.+.+|......+.
T Consensus       127 VyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~  205 (494)
T 1bpo_A          127 VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFK  205 (494)
T ss_dssp             EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEE
T ss_pred             eEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEe
Confidence            99999964 34555555443    4566677788888877443       2478899998664 3455667766554444


Q ss_pred             eeCC---CeEEE-EeC---CCcEEEEecCCC---e------ee-EEecC---CCCeeEEEeecC-CeEEEEeCCCCEEEE
Q 010296          312 CLRK---ERVLT-VGR---DRSMQLWKVPEE---S------RL-VFRAP---ASSLECCCFISN-DEFLSGSDDGSIELW  370 (513)
Q Consensus       312 ~~~~---~~~~~-~~~---d~~i~iwd~~~~---~------~~-~~~~~---~~~v~~~~~~~~-~~~~~~~~dg~i~iw  370 (513)
                      ...+   ..+++ +..   .+.+++.++...   .      .. .+..+   ..-..++.+++. |.+...+.-|.|++|
T Consensus       206 ~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~ly  285 (494)
T 1bpo_A          206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY  285 (494)
T ss_dssp             CTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             cCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEE
Confidence            3321   13333 332   378888888533   1      01 11111   233445666654 456688999999999


Q ss_pred             ecCCCCeeEEeecC
Q 010296          371 SLLRKKPVYIVKNA  384 (513)
Q Consensus       371 d~~~~~~~~~~~~~  384 (513)
                      |+.++.+++.-...
T Consensus       286 DleTgt~i~~nrIs  299 (494)
T 1bpo_A          286 DLETGTCIYMNRIS  299 (494)
T ss_dssp             ETTTCCEEEEEECC
T ss_pred             ecccceeeeeeccc
Confidence            99999999887643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.29  E-value=0.091  Score=47.13  Aligned_cols=142  Identities=13%  Similarity=0.223  Sum_probs=73.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCCC-----cEEEEeCCCCceeE
Q 010296          231 DGRYLASGGLD-----RHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFDR-----TVKIWNAEDRAYIS  298 (513)
Q Consensus       231 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~  298 (513)
                      ++.+++.|+.+     ..+.+||+.+.+...  .+.........+.  -++..++.|+.++     .+.+||+.+.+...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            56777777654     358899987765332  2221111122222  2566666776553     57889988765433


Q ss_pred             EeecccC-CeEEEEeeCCCeEE-EEeC-------CCcEEEEecCCCeeeEEecCCC--CeeEEEeecCCe-EEEEeCC--
Q 010296          299 TLFGHQS-EVLTIDCLRKERVL-TVGR-------DRSMQLWKVPEESRLVFRAPAS--SLECCCFISNDE-FLSGSDD--  364 (513)
Q Consensus       299 ~~~~~~~-~v~~~~~~~~~~~~-~~~~-------d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d--  364 (513)
                      .-..... .-.++... ++.++ .++.       -..+.+||+.+..-........  .-.+++.. ++. ++.|+.+  
T Consensus       139 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~  216 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGP  216 (302)
T ss_dssp             ECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSS
T ss_pred             cCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCC
Confidence            2111111 11122222 45554 4443       2458889988775443322111  11233333 444 5666654  


Q ss_pred             ---CCEEEEecCCCC
Q 010296          365 ---GSIELWSLLRKK  376 (513)
Q Consensus       365 ---g~i~iwd~~~~~  376 (513)
                         ..+.+||+.+.+
T Consensus       217 ~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          217 LVRKSVEVYDPTTNA  231 (302)
T ss_dssp             SBCCCEEEEETTTTE
T ss_pred             cccceEEEEeCCCCC
Confidence               368888887754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.005  Score=55.88  Aligned_cols=140  Identities=16%  Similarity=0.076  Sum_probs=82.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCcceeeeccCc-CCCeEEEEEe--cCCCeEEEE--eCCCcEEEEeCCCCceeEEeec----
Q 010296          232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGH-RGPVSCLTFR--QGTSELFSG--SFDRTVKIWNAEDRAYISTLFG----  302 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~----  302 (513)
                      +.+++.++.||.|+-+|..+|+.+-.+... ..++....-.  +.+..++.+  +.||.|+.++..+|.....+..    
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            347888999999999999999988877643 1222221100  112234433  6899999999988855443321    


Q ss_pred             ccCCeEE-----E----EeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCe--------eEEEe------ecCCeEE
Q 010296          303 HQSEVLT-----I----DCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSL--------ECCCF------ISNDEFL  359 (513)
Q Consensus       303 ~~~~v~~-----~----~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v--------~~~~~------~~~~~~~  359 (513)
                      ...++..     +    ..+.++.+++++.++.+...|+.+++.+.......+.        .|...      ..++.++
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence            1112221     0    0014678889999999999999999888544433211        11111      1123466


Q ss_pred             EEeCCCCEEEEe
Q 010296          360 SGSDDGSIELWS  371 (513)
Q Consensus       360 ~~~~dg~i~iwd  371 (513)
                      .+..+..+.+.+
T Consensus       170 ig~~~y~v~~~~  181 (339)
T 2be1_A          170 IGKTIFELGIHS  181 (339)
T ss_dssp             EEEEEEECEECC
T ss_pred             EecceEEEEEEC
Confidence            666666666666

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.27  E-value=0.0063  Score=50.74  Aligned_cols=177  Identities=9%  Similarity=-0.097  Sum_probs=95.2

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCc------eeEEeec-ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeE------E
Q 010296          274 TSELFSGSFDRTVKIWNAEDRA------YISTLFG-HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLV------F  340 (513)
Q Consensus       274 ~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~------~  340 (513)
                      ...|++...| +|+.=....+.      ...++-. .=..+..++|+|++.|.++ .+|.++-.+..+.....      .
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~   81 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKK   81 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccE
Confidence            3456666666 66555554443      1222211 1236789999999998888 78887777765422211      1


Q ss_pred             ec--CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCC
Q 010296          341 RA--PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHS  418 (513)
Q Consensus       341 ~~--~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  418 (513)
                      .+  .-....++.|.++|.|.++ .||.|+-++..+...-.-+..              ...|                .
T Consensus        82 IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~--------------a~~v----------------g  130 (236)
T 1tl2_A           82 IGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIAR--------------ATEV----------------G  130 (236)
T ss_dssp             EECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHH--------------SEEE----------------E
T ss_pred             ecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceecc--------------ccEe----------------c
Confidence            11  1112478889999987766 669887776432111100000              0000                0


Q ss_pred             CCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCc-c---eeeeeecCcccEEEEEEeecCCCEEEEE
Q 010296          419 SSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETK-D---IQPLYNLPLVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       419 ~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~-~---~~~~~~~~~~~~v~~v~~sp~~~~l~~~  485 (513)
                      ...-..+..|.|.|+|.+.++.  |+.++-+...+... .   .........-...+.+.|+|+|.+.++.
T Consensus       131 ~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          131 SGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             CSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             cCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence            1111238999999999877777  77654333222110 0   0011111122234557799999887776

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.26  E-value=0.014  Score=53.52  Aligned_cols=156  Identities=9%  Similarity=0.149  Sum_probs=88.6

Q ss_pred             eEEEEeeCCCeEEEEe-------------CCCcEEEEecCCC--ee--eEEec-----CCCCeeEEEeec--CC--eEE-
Q 010296          307 VLTIDCLRKERVLTVG-------------RDRSMQLWKVPEE--SR--LVFRA-----PASSLECCCFIS--ND--EFL-  359 (513)
Q Consensus       307 v~~~~~~~~~~~~~~~-------------~d~~i~iwd~~~~--~~--~~~~~-----~~~~v~~~~~~~--~~--~~~-  359 (513)
                      .-.+...++|.+++++             .+|.|.++|+.+.  +.  +.+..     .......+.+.+  ++  +|+ 
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3455566777666554             6889999998742  22  23332     123455666655  34  233 


Q ss_pred             EEeC--CCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCE
Q 010296          360 SGSD--DGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDL  436 (513)
Q Consensus       360 ~~~~--dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  436 (513)
                      +...  ..+|.+|++.... ....+....                                 .......+.+.+.++|.+
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~---------------------------------g~~~~~pND~~v~~~G~f  178 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIR---------------------------------HKLLPSVNDIVAVGPEHF  178 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEEC---------------------------------CTTCSSEEEEEEEETTEE
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccc---------------------------------cCCCCCCceEEEeCCCCE
Confidence            3333  4567777765432 221111100                                 011122889999999988


Q ss_pred             EEEecC---C------------CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          437 AASGAG---N------------GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       437 l~~g~~---d------------g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      .++...   |            ..=+||.+..+  .+..+..  .-...+.++||||+++|+++-+..++|..|++..
T Consensus       179 yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          179 YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeec--CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            777541   1            12234444333  1222221  2345789999999999998877788999998764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.20  E-value=0.17  Score=48.40  Aligned_cols=100  Identities=7%  Similarity=0.055  Sum_probs=60.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce--eeeccC------cCCCeEEEEEecC---CCeEEEEeC--------
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEH--IQAFPG------HRGPVSCLTFRQG---TSELFSGSF--------  282 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~--------  282 (513)
                      ..+.|+|.|+|+++++-...+.|++++..++..  +..+..      ....+..|+|+|+   +..|+.+..        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            467999999999777655445788888655543  222221      2456789999995   556654432        


Q ss_pred             -----CCcEEEEeCCCC--c-----eeE-Eeec-ccCCeEEEEeeCCCeEEEE
Q 010296          283 -----DRTVKIWNAEDR--A-----YIS-TLFG-HQSEVLTIDCLRKERVLTV  321 (513)
Q Consensus       283 -----dg~i~iwd~~~~--~-----~~~-~~~~-~~~~v~~~~~~~~~~~~~~  321 (513)
                           ...|..|++...  .     .+. .+.. .......|.|.|++.|+++
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~  160 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT  160 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence                 235666655322  1     111 1211 1234688999999977643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.20  E-value=0.089  Score=47.58  Aligned_cols=144  Identities=15%  Similarity=0.106  Sum_probs=72.3

Q ss_pred             cCCCCEEEEEeC-----C------CcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCC--------CcEE
Q 010296          229 SSDGRYLASGGL-----D------RHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFD--------RTVK  287 (513)
Q Consensus       229 s~~~~~l~s~~~-----d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~  287 (513)
                      ..++.+++.|+.     .      ..+.+||+.+.+...  .+....... +++.. ++..++.|+.+        ..+.
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGEA-LNSIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEEE-TTEEEEECCEESSTTCCBCCCEE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEEE-CCEEEEEeCCcCCCCCcccceEE
Confidence            346777788773     1      127788888765422  222111111 22222 55566666632        4689


Q ss_pred             EEeCCCCceeEEeecccCCe-EEEEeeCCCeEE-EEeC------CCcEEEEecCCCeeeEEecCCC--CeeEEEeecCCe
Q 010296          288 IWNAEDRAYISTLFGHQSEV-LTIDCLRKERVL-TVGR------DRSMQLWKVPEESRLVFRAPAS--SLECCCFISNDE  357 (513)
Q Consensus       288 iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~-~~~~------d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~  357 (513)
                      +||+.+.+....-....... .++.. -++.++ .++.      -..+.+||+.+..-........  .-.+++.. +++
T Consensus       121 ~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~  198 (315)
T 4asc_A          121 CYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGR  198 (315)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTE
T ss_pred             EECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCE
Confidence            99998875432211111111 12222 245444 5554      2468899988765443222111  11223333 444


Q ss_pred             -EEEEeCCC-----CEEEEecCCCC
Q 010296          358 -FLSGSDDG-----SIELWSLLRKK  376 (513)
Q Consensus       358 -~~~~~~dg-----~i~iwd~~~~~  376 (513)
                       ++.|+.++     .+.+||+.+.+
T Consensus       199 iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          199 IIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             EEEEeccCCCCccceEEEEECCCCe
Confidence             66776554     47778877664

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.0087  Score=54.33  Aligned_cols=192  Identities=11%  Similarity=0.043  Sum_probs=102.6

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEeCC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG-GLDRHIHLWDTR  250 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~  250 (513)
                      .+++.++.||.|.-+|..+|+....+...  .+      .+.........       ..++..++.. +.||.|..++..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~------~p~~~~~~~~~-------~~~~~~~vv~p~~dG~l~a~~~~   75 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NF------QPLIEIQEPSR-------LETYETLIIEPFGDGNIYYFNAH   75 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG--GS------CCSEECCCSCT-------TTSSEEEEECCSTTTEEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC--cc------CCcEEecCCcc-------ccCCcEEEEEECCCCEEEEEECC
Confidence            46889999999999999999988765221  00      00000000000       0123333333 578999999988


Q ss_pred             CcceeeeccC----cCCCeEE---EEE-----ecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC-C------eEEEE
Q 010296          251 IQEHIQAFPG----HRGPVSC---LTF-----RQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS-E------VLTID  311 (513)
Q Consensus       251 ~~~~~~~~~~----~~~~v~~---~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~------v~~~~  311 (513)
                      +|.....+..    ...++..   ..+     ...+..+++++.+|.+...|+.+|+.+..+..... .      ..|..
T Consensus        76 ~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~  155 (339)
T 2be1_A           76 QGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSP  155 (339)
T ss_dssp             TEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----------
T ss_pred             CCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccc
Confidence            7754433221    1122221   000     01456788999999999999999999988753211 0      01111


Q ss_pred             e------eCCCeEEEEeCCCcEEEEecCCCeeeE-----EecCCCC--ee-EEEeecCCeEEEEeCCCCEEEEecCCCCe
Q 010296          312 C------LRKERVLTVGRDRSMQLWKVPEESRLV-----FRAPASS--LE-CCCFISNDEFLSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       312 ~------~~~~~~~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~--v~-~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  377 (513)
                      .      ..++.++.+..+..+.+.+ +++....     .......  +. .-..+.++.+++++.||.|..+|..+++.
T Consensus       156 ~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~  234 (339)
T 2be1_A          156 EEKIKLQECENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIA  234 (339)
T ss_dssp             ---------CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCE
T ss_pred             ccccccccCCCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCcE
Confidence            1      1134566666666666655 3332110     0000000  00 00011235556788899999999888887


Q ss_pred             eE
Q 010296          378 VY  379 (513)
Q Consensus       378 ~~  379 (513)
                      +.
T Consensus       235 ~W  236 (339)
T 2be1_A          235 RW  236 (339)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.02  E-value=0.18  Score=45.38  Aligned_cols=142  Identities=14%  Similarity=0.178  Sum_probs=72.6

Q ss_pred             CCCEEEEEeC----C-----CcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCC-----CcEEEEeCCCC
Q 010296          231 DGRYLASGGL----D-----RHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFD-----RTVKIWNAEDR  294 (513)
Q Consensus       231 ~~~~l~s~~~----d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  294 (513)
                      ++.+++.|+.    +     ..+.+||+.+.+...  .+.........+.+  +++.++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5667777665    2     468899987765332  22221112222222  56666666543     46889999876


Q ss_pred             ceeEEeecccCC-eEEEEeeCCCeEE-EEeCC-----CcEEEEecCCCeeeEEecCC--CCeeEEEeecCCe-EEEEeCC
Q 010296          295 AYISTLFGHQSE-VLTIDCLRKERVL-TVGRD-----RSMQLWKVPEESRLVFRAPA--SSLECCCFISNDE-FLSGSDD  364 (513)
Q Consensus       295 ~~~~~~~~~~~~-v~~~~~~~~~~~~-~~~~d-----~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~~d  364 (513)
                      +....-...... -.++... ++.++ .++.+     ..+.+||+.+..-.......  ....+++.. ++. ++.|+.+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~  225 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYD  225 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred             eEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCC
Confidence            543321111111 1122222 45554 55543     46888998776544322111  111223333 444 5566654


Q ss_pred             -----CCEEEEecCCCC
Q 010296          365 -----GSIELWSLLRKK  376 (513)
Q Consensus       365 -----g~i~iwd~~~~~  376 (513)
                           ..+.+||+.+.+
T Consensus       226 ~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          226 GQDQLNSVERYDVETET  242 (308)
T ss_dssp             SSSBCCCEEEEETTTTE
T ss_pred             CCCccceEEEEeCCCCc
Confidence                 458888887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.99  E-value=0.17  Score=45.50  Aligned_cols=142  Identities=11%  Similarity=0.108  Sum_probs=70.7

Q ss_pred             CCCEEEEEeC----CCcEEEEeCCCcceeee--ccCcCCCeEEEEEecCCCeEEEEeC----C-----CcEEEEeCCCCc
Q 010296          231 DGRYLASGGL----DRHIHLWDTRIQEHIQA--FPGHRGPVSCLTFRQGTSELFSGSF----D-----RTVKIWNAEDRA  295 (513)
Q Consensus       231 ~~~~l~s~~~----dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~~  295 (513)
                      ++.+++.|+.    -..+.+||+.+.+....  +....... +++. -++..++.|+.    +     ..+.+||+.+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            5667777763    24688999887654322  22111111 2222 25566666665    2     468899988765


Q ss_pred             eeEEeecccCC-eEEEEeeCCCeEE-EEeCC-----CcEEEEecCCCeeeEEecCCC--CeeEEEeecCCe-EEEEeCC-
Q 010296          296 YISTLFGHQSE-VLTIDCLRKERVL-TVGRD-----RSMQLWKVPEESRLVFRAPAS--SLECCCFISNDE-FLSGSDD-  364 (513)
Q Consensus       296 ~~~~~~~~~~~-v~~~~~~~~~~~~-~~~~d-----~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d-  364 (513)
                      ....-...... -.++... ++.++ .++.+     ..+.+||+.+..-........  .-.+++.. ++. ++.|+.+ 
T Consensus       102 W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~  179 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDG  179 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCS
T ss_pred             EeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCC
Confidence            43221111111 1122222 55554 44432     468889988765443221111  11122333 444 5566654 


Q ss_pred             ----CCEEEEecCCCC
Q 010296          365 ----GSIELWSLLRKK  376 (513)
Q Consensus       365 ----g~i~iwd~~~~~  376 (513)
                          ..+.+||+.+.+
T Consensus       180 ~~~~~~~~~yd~~~~~  195 (308)
T 1zgk_A          180 TNRLNSAECYYPERNE  195 (308)
T ss_dssp             SCBCCCEEEEETTTTE
T ss_pred             CCcCceEEEEeCCCCe
Confidence                457778876653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.97  E-value=0.13  Score=49.18  Aligned_cols=57  Identities=9%  Similarity=-0.039  Sum_probs=38.6

Q ss_pred             ccCCeEEEEeeCCCeEEEEeCCC-cEEEEecCCCeeeEEe--c-------CCCCeeEEEeec----CCeEE
Q 010296          303 HQSEVLTIDCLRKERVLTVGRDR-SMQLWKVPEESRLVFR--A-------PASSLECCCFIS----NDEFL  359 (513)
Q Consensus       303 ~~~~v~~~~~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~--~-------~~~~v~~~~~~~----~~~~~  359 (513)
                      .-...+.|+|.|+++++++...+ .|++++...+....+.  .       ....+..++++|    ++.|.
T Consensus        25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY   95 (454)
T 1cru_A           25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (454)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence            34466899999999999888876 6888876544332211  1       234567899998    55543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.95  E-value=0.6  Score=50.29  Aligned_cols=175  Identities=8%  Similarity=0.045  Sum_probs=106.0

Q ss_pred             cEEEEeCCCCceeEEeecc-cCCeEEEEe---eCC--CeEEEEe----------CCCcEEEEecCCCeee--EEecCCCC
Q 010296          285 TVKIWNAEDRAYISTLFGH-QSEVLTIDC---LRK--ERVLTVG----------RDRSMQLWKVPEESRL--VFRAPASS  346 (513)
Q Consensus       285 ~i~iwd~~~~~~~~~~~~~-~~~v~~~~~---~~~--~~~~~~~----------~d~~i~iwd~~~~~~~--~~~~~~~~  346 (513)
                      .|++.|..+.+.+..+.-. ...+.+++.   ..+  ..+++|.          ..|.|++|++...+..  ......+.
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            3667776666655544322 223445443   222  3455554          3478999998744332  23334567


Q ss_pred             eeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEE
Q 010296          347 LECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS  426 (513)
Q Consensus       347 v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~  426 (513)
                      +++++-.. |+|++| ....|++|++...+.+. .....                                 .   ..|.
T Consensus       888 v~al~~~~-g~Lla~-ig~~l~vy~l~~~~~L~-~~~~~---------------------------------~---~~i~  928 (1158)
T 3ei3_A          888 VYSMVEFN-GKLLAS-INSTVRLYEWTTEKELR-TECNH---------------------------------Y---NNIM  928 (1158)
T ss_dssp             EEEEEEET-TEEEEE-ETTEEEEEEECTTSCEE-EEEEE---------------------------------C---CCSC
T ss_pred             CEEEeeeC-CEEEEE-cCCEEEEEECCCCceEE-EEeec---------------------------------c---ccEE
Confidence            88777654 565554 45789999998766444 11100                                 0   0022


Q ss_pred             EEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          427 SVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       427 ~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      .+.....++++++|..-..|.++..+.....+..+..-.....++++.|-.++ .++.+ ..+|.|.+....+.
T Consensus       929 ~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~a-D~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A          929 ALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGA-ENAFNLFVCQKDSA 1000 (1158)
T ss_dssp             EEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEE-ETTSEEEEEEECTT
T ss_pred             EEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEE-cCCCcEEEEecCCC
Confidence            33333356799999888888888876654556666655567779999998665 45555 88899988876653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.91  E-value=0.21  Score=45.08  Aligned_cols=138  Identities=8%  Similarity=0.031  Sum_probs=69.8

Q ss_pred             EEEEEeCCCcEEEEeCCCcceee-eccCcCCCeEEEEEecCCCeEEEEeC----C-------CcEEEEeCCCCceeEEee
Q 010296          234 YLASGGLDRHIHLWDTRIQEHIQ-AFPGHRGPVSCLTFRQGTSELFSGSF----D-------RTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~~~  301 (513)
                      +++.|+  ..+.+||..+++-.. .+..........+...++..++.|+.    +       ..+.+||+.+.+.... .
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-P   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-C
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-C
Confidence            344555  579999998876432 22212222333333456777777773    1       1278889887754322 1


Q ss_pred             cccCCe--EEEEeeCCCeEE-EEeCC--------CcEEEEecCCCeeeEEecCC-C-CeeEEEeecCCe-EEEEeC-C--
Q 010296          302 GHQSEV--LTIDCLRKERVL-TVGRD--------RSMQLWKVPEESRLVFRAPA-S-SLECCCFISNDE-FLSGSD-D--  364 (513)
Q Consensus       302 ~~~~~v--~~~~~~~~~~~~-~~~~d--------~~i~iwd~~~~~~~~~~~~~-~-~v~~~~~~~~~~-~~~~~~-d--  364 (513)
                      ....+-  .+++.. ++.++ .++.+        ..+.+||+.+..-....... . .-.+++. .++. ++.|+. +  
T Consensus        84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred             CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCC
Confidence            111111  122222 45544 55532        45888998876543322111 1 1122333 3444 556665 2  


Q ss_pred             ---CCEEEEecCCCC
Q 010296          365 ---GSIELWSLLRKK  376 (513)
Q Consensus       365 ---g~i~iwd~~~~~  376 (513)
                         ..+.+||..+.+
T Consensus       162 ~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          162 KCLNKMCVYDPKKFE  176 (315)
T ss_dssp             CBCCCEEEEETTTTE
T ss_pred             cccceEEEEeCCCCe
Confidence               457788877653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.88  E-value=0.081  Score=49.00  Aligned_cols=149  Identities=13%  Similarity=0.201  Sum_probs=93.5

Q ss_pred             ecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc----cCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCe----------
Q 010296          271 RQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH----QSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES----------  336 (513)
Q Consensus       271 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~----------  336 (513)
                      ..++..++.+- ++.||.-++......+.+...    -..+..+..+|+|.+++...+..|.|..+..+.          
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            34455555443 466777777643333333322    225788999999999998889999999887321          


Q ss_pred             ---eeEEec------CCCCeeEEEeecCC----eEEEEeCCCCEEEEecCCC--CeeEEeecCCCcccCCCCcccCcCcc
Q 010296          337 ---RLVFRA------PASSLECCCFISND----EFLSGSDDGSIELWSLLRK--KPVYIVKNAHPLLDGLKNFEQDEGKI  401 (513)
Q Consensus       337 ---~~~~~~------~~~~v~~~~~~~~~----~~~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i  401 (513)
                         ...+..      +..+|..+.|+|-+    .+++-..|+.|++||+...  +|. .+.....      .+..     
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~------~fg~-----  175 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN------SFGL-----  175 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS------EEES-----
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc------ccCC-----
Confidence               111221      35679999999965    4889999999999999863  233 3321100      0000     


Q ss_pred             ccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe--cCCCcEEEE
Q 010296          402 SNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG--AGNGSVRLW  449 (513)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g--~~dg~v~vw  449 (513)
                                       ......|.+++|.+++-.|...  +..|.|+-.
T Consensus       176 -----------------d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          176 -----------------DARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             -----------------CSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             -----------------CcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence                             1111238999999988766664  477877643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.86  E-value=0.091  Score=48.69  Aligned_cols=151  Identities=13%  Similarity=0.050  Sum_probs=82.8

Q ss_pred             CCCcEEEEecCCCeee-EEecC----CCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccC
Q 010296          323 RDRSMQLWKVPEESRL-VFRAP----ASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQD  397 (513)
Q Consensus       323 ~d~~i~iwd~~~~~~~-~~~~~----~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (513)
                      .++.||.-++...... .+...    ...+..+..+|+|.+++...+..|.|..+..+.....-...   ...+..    
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~---~~~~q~----  111 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSI---QDAFQI----  111 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHH---HHTTEE----
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccc---ccccce----
Confidence            3466666666533222 22222    33678899999999888888889999988743210000000   000000    


Q ss_pred             cCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC---CEEEEecCCCcEEEEEeCCCCcceeeeeec-------Ccc
Q 010296          398 EGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS---DLAASGAGNGSVRLWAIESETKDIQPLYNL-------PLV  467 (513)
Q Consensus       398 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-------~~~  467 (513)
                       ..+.....           .......|..+.|+|-+   ..|++-..|+.|++||+.........+...       ...
T Consensus       112 -~ty~l~~~-----------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~  179 (452)
T 3pbp_A          112 -FHYSIDEE-----------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARV  179 (452)
T ss_dssp             -EEEEGGGC-----------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSC
T ss_pred             -eEEEcCCc-----------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCccc
Confidence             00000000           01123459999999954   689999999999999998632211122111       112


Q ss_pred             cEEEEEEeecCCCEEEEEe-cCCCcc
Q 010296          468 GFVNSLAFAKSGQFLIAGV-GQEPRL  492 (513)
Q Consensus       468 ~~v~~v~~sp~~~~l~~~~-~~dg~v  492 (513)
                      ..|.+++|.+++-.|.+.. ...|-|
T Consensus       180 ~ev~S~~Fg~~~lTLYvl~~t~~GDI  205 (452)
T 3pbp_A          180 NDITDLEFSKDGLTLYCLNTTEGGDI  205 (452)
T ss_dssp             CCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred             ceEEEEEEcCCCcEEEEEecCCCCCE
Confidence            4578888988766555531 344554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.82  E-value=0.28  Score=44.65  Aligned_cols=156  Identities=14%  Similarity=0.133  Sum_probs=89.1

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-  231 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-  231 (513)
                      ..+...-.....|+|.|+|.++++--..|.|++++..++......        ..    + ............|+|+|+ 
T Consensus        25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~--------~~----~-~v~~~g~~GllGia~~Pdf   91 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELG--------EV----P-GVSPSGEGGLLGIALSPDY   91 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--------EC----T-TCCCBTTBSEEEEEECTTH
T ss_pred             EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeec--------cc----C-ceeecCCCCceeeEecccc
Confidence            334444566789999999997777665899999986655432110        00    0 011233556899999995 


Q ss_pred             --CCEEEEE-e--CCCcEEEEeCCCc----------cee-eeccC-cCCCeEEEEEecCCCeEEEEeC------------
Q 010296          232 --GRYLASG-G--LDRHIHLWDTRIQ----------EHI-QAFPG-HRGPVSCLTFRQGTSELFSGSF------------  282 (513)
Q Consensus       232 --~~~l~s~-~--~dg~i~vwd~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~------------  282 (513)
                        +.+|+.. +  .++.|.-|.+..+          +.+ ..+.. .......|.|.|+|.+.++.+.            
T Consensus        92 ~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~  171 (347)
T 3das_A           92 ASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKS  171 (347)
T ss_dssp             HHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTC
T ss_pred             ccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCC
Confidence              3444432 2  3455666665541          111 12221 1223467999999987766542            


Q ss_pred             -CCcEEEEeCCCC--------c-eeEEeecccCCeEEEEeeCCCeEEEEeC
Q 010296          283 -DRTVKIWNAEDR--------A-YISTLFGHQSEVLTIDCLRKERVLTVGR  323 (513)
Q Consensus       283 -dg~i~iwd~~~~--------~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~  323 (513)
                       .|.|.-.+....        . .+. ..+|. ....++|.|++.|+++-.
T Consensus       172 ~~G~IlRi~~dG~ip~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d~  220 (347)
T 3das_A          172 LGGKILRMTPDGEPAPGNPFPGSPVY-SYGHR-NVQGLAWDDKQRLFASEF  220 (347)
T ss_dssp             STTCEEEECTTSSBCTTCSSTTCCEE-EBCCS-BCCEEEECTTCCEEEEEC
T ss_pred             CCCEEEEEeCCCCccCCCCCCCCeEE-eeCCC-CcceEEECCCCCEEEEec
Confidence             355655565432        1 111 12343 356889999888877654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.76  E-value=0.3  Score=44.09  Aligned_cols=143  Identities=13%  Similarity=0.142  Sum_probs=71.1

Q ss_pred             cCCCCEEEEEeC----CC-------cEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCC-------CcEEE
Q 010296          229 SSDGRYLASGGL----DR-------HIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFD-------RTVKI  288 (513)
Q Consensus       229 s~~~~~l~s~~~----dg-------~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i  288 (513)
                      ..++.+++.|+.    ++       .+.+||..+.+...  .+...... .+++.. ++..++.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE-CCEEEEEcCccCCCCcccceEEE
Confidence            446778888873    11       17788887665432  22211111 122222 55666666653       35888


Q ss_pred             EeCCCCceeEEeecccCCe--EEEEeeCCCeEE-EEeC------CCcEEEEecCCCeeeEEecCCC--CeeEEEeecCCe
Q 010296          289 WNAEDRAYISTLFGHQSEV--LTIDCLRKERVL-TVGR------DRSMQLWKVPEESRLVFRAPAS--SLECCCFISNDE  357 (513)
Q Consensus       289 wd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~-~~~~------d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~  357 (513)
                      ||+.+.+....-. ...+.  .++.. .++.++ .++.      -..+.+||+.+..-........  ...+++.. ++.
T Consensus       132 yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~  208 (318)
T 2woz_A          132 YDPVAAKWSEVKN-LPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGK  208 (318)
T ss_dssp             EETTTTEEEEECC-CSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE
T ss_pred             EeCCCCCEeECCC-CCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCE
Confidence            9988765433211 11111  12222 355554 5543      2458899998776443322111  11233333 444


Q ss_pred             -EEEEeCC-----CCEEEEecCCCC
Q 010296          358 -FLSGSDD-----GSIELWSLLRKK  376 (513)
Q Consensus       358 -~~~~~~d-----g~i~iwd~~~~~  376 (513)
                       ++.|+.+     ..+.+||+.+.+
T Consensus       209 iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          209 IVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EEEEcCcCCCCccceEEEEECCCCe
Confidence             5566543     246677776654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.70  E-value=0.12  Score=55.54  Aligned_cols=200  Identities=12%  Similarity=0.151  Sum_probs=114.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-ceeEEeecc
Q 010296          225 ALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-AYISTLFGH  303 (513)
Q Consensus       225 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~  303 (513)
                      +.-.+|..+.+|.-. ..++.|+|+.+...+..+.- ..+|.--.|-... .|+..+ +..|+-|++... .++..+..|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            345677777666654 67899999998887776653 3466666775443 333332 457999999642 344444333


Q ss_pred             ----cCCeEEEEeeCCCeEE--EEe------CCCcEEEEecCCCeeeEEecCCCCeeEEEeecC---CeEEEEe----CC
Q 010296          304 ----QSEVLTIDCLRKERVL--TVG------RDRSMQLWKVPEESRLVFRAPASSLECCCFISN---DEFLSGS----DD  364 (513)
Q Consensus       304 ----~~~v~~~~~~~~~~~~--~~~------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~----~d  364 (513)
                          ...|.....+++..++  +|-      -.|.+.+|....+....+.+|......+....+   ..+++-.    ..
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g  225 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence                3456666666666433  322      358899999887766655555544333332211   1122211    12


Q ss_pred             CCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC
Q 010296          365 GSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN  443 (513)
Q Consensus       365 g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d  443 (513)
                      +.++|.++... .....+             ...             .....+..........++..|+.-.+++.-+.-
T Consensus       226 ~kLhi~Ei~~~~~~~~~f-------------~kk-------------~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~  279 (1630)
T 1xi4_A          226 GKLHIIEVGTPPTGNQPF-------------PKK-------------AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY  279 (1630)
T ss_pred             ceEEEEecCCCccCCCCC-------------ccc-------------cccccCCcccccCcceEEEeccccCEEEEEecC
Confidence            56677666432 000000             000             000011112223346778888888888899999


Q ss_pred             CcEEEEEeCCC
Q 010296          444 GSVRLWAIESE  454 (513)
Q Consensus       444 g~v~vwd~~~~  454 (513)
                      |.|.+||+.++
T Consensus       280 G~~~~~d~~t~  290 (1630)
T 1xi4_A          280 GYIHLYDLETG  290 (1630)
T ss_pred             ceEEEEecccc
Confidence            99999999998

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.54  E-value=0.39  Score=44.16  Aligned_cols=52  Identities=13%  Similarity=0.356  Sum_probs=27.9

Q ss_pred             CCCEEEEEeC-C---------CcEEEEeCCCcceeeeccCc-CCCe-EEEEEecCCCeEEEEeCC
Q 010296          231 DGRYLASGGL-D---------RHIHLWDTRIQEHIQAFPGH-RGPV-SCLTFRQGTSELFSGSFD  283 (513)
Q Consensus       231 ~~~~l~s~~~-d---------g~i~vwd~~~~~~~~~~~~~-~~~v-~~~~~~~~~~~l~~~~~d  283 (513)
                      ++.+++.|+. +         ..+.+||+.+.+-...-... .... .+++. .+++.++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            5667777765 2         46889998876543221111 1111 22222 466777777754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.41  E-value=0.22  Score=53.56  Aligned_cols=193  Identities=10%  Similarity=0.128  Sum_probs=115.7

Q ss_pred             EECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 010296          166 ALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH  245 (513)
Q Consensus       166 ~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  245 (513)
                      -.+|..+.||.=. ..++.||++.+...+..+                    ....+|..=.|-... .|+..+ +..|+
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~--------------------~~~e~VvfWkWis~~-~l~lVT-~~aVy  128 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAH--------------------TMTDDVTFWKWISLN-TVALVT-DNAVY  128 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhhccc--------------------ccCCCceEEEecCCC-eeEEEc-CCeEE
Confidence            4577777666544 688999999887766543                    223456666776443 344443 45799


Q ss_pred             EEeCCC-cceeeeccCc----CCCeEEEEEecCCCeEEEEe-------CCCcEEEEeCCCCceeEEeecccCCeEEEEee
Q 010296          246 LWDTRI-QEHIQAFPGH----RGPVSCLTFRQGTSELFSGS-------FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL  313 (513)
Q Consensus       246 vwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  313 (513)
                      -|++.. ..++..|..|    ...|..-..+++.++++..+       ..|.+.+|....+. .+.+.||......+...
T Consensus       129 HW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~  207 (1630)
T 1xi4_A          129 HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKME  207 (1630)
T ss_pred             EeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccC
Confidence            999964 3455555544    34566777788888877433       35888999886542 33445555544333332


Q ss_pred             C---CCeEEEEe----CCCcEEEEecCCC----eee------EEecC---CCCeeEEEeecC-CeEEEEeCCCCEEEEec
Q 010296          314 R---KERVLTVG----RDRSMQLWKVPEE----SRL------VFRAP---ASSLECCCFISN-DEFLSGSDDGSIELWSL  372 (513)
Q Consensus       314 ~---~~~~~~~~----~d~~i~iwd~~~~----~~~------~~~~~---~~~v~~~~~~~~-~~~~~~~~dg~i~iwd~  372 (513)
                      .   ...+++-.    ..+.++|.++...    ...      .+..+   ..-..++..++. |.+...+.-|.|++||+
T Consensus       208 ~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~  287 (1630)
T 1xi4_A          208 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL  287 (1630)
T ss_pred             CCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEec
Confidence            1   12233222    2368888887443    111      11111   222334445543 45668889999999999


Q ss_pred             CCCCeeEEee
Q 010296          373 LRKKPVYIVK  382 (513)
Q Consensus       373 ~~~~~~~~~~  382 (513)
                      .++.+++.-.
T Consensus       288 ~t~~~i~~~r  297 (1630)
T 1xi4_A          288 ETGTCIYMNR  297 (1630)
T ss_pred             ccchhhhhcc
Confidence            9999887654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.34  E-value=0.5  Score=47.98  Aligned_cols=147  Identities=13%  Similarity=0.071  Sum_probs=78.0

Q ss_pred             CCCCEEEEEeCC----CcEEEEeCCCcceeeec-c------CcCCCeEEEEEec-CCCeEEEEeCC------CcEEEEeC
Q 010296          230 SDGRYLASGGLD----RHIHLWDTRIQEHIQAF-P------GHRGPVSCLTFRQ-GTSELFSGSFD------RTVKIWNA  291 (513)
Q Consensus       230 ~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~iwd~  291 (513)
                      .++.+++.|+.+    ..+.+||+.+++....- .      .....-.+++..+ ++..++.|+.+      ..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456777777743    46888998876543222 1      0111122334443 66777777653      35889998


Q ss_pred             CCCceeEEeecccCCe-EEEEeeCCCeE-EEEeCCC--cEEEEecCCCeeeEEec------CCCCeeEEEeecC-Ce-EE
Q 010296          292 EDRAYISTLFGHQSEV-LTIDCLRKERV-LTVGRDR--SMQLWKVPEESRLVFRA------PASSLECCCFISN-DE-FL  359 (513)
Q Consensus       292 ~~~~~~~~~~~~~~~v-~~~~~~~~~~~-~~~~~d~--~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~-~~-~~  359 (513)
                      .+.+....-....... .+++...++.+ +.||.++  .+.+||+.+..-.....      ......++.+..+ +. ++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            8865433211111111 22233235544 4666443  78999998776443321      1222233444544 54 55


Q ss_pred             EEeC--C-----CCEEEEecCCCC
Q 010296          360 SGSD--D-----GSIELWSLLRKK  376 (513)
Q Consensus       360 ~~~~--d-----g~i~iwd~~~~~  376 (513)
                      .|+.  +     ..+.+||+.+..
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCc
Confidence            6665  2     357888887766

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.25  E-value=0.57  Score=41.41  Aligned_cols=182  Identities=15%  Similarity=0.132  Sum_probs=96.6

Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL  240 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  240 (513)
                      .|..|+...... ++. . ||.|..|-......+-.                   .......|..|+...... ++. . 
T Consensus        25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~-------------------p~~~~~~i~~ia~G~~hs-~~l-~-   79 (282)
T 3qhy_B           25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTM-------------------PAATQSGVDAIAAGNYHS-LAL-K-   79 (282)
T ss_dssp             SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSC-------------------CGGGGSCCCEEEECSSEE-EEE-E-
T ss_pred             CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCC-------------------CccCCCCEEEEEeCCCEE-EEE-E-
Confidence            577777655432 233 4 89999997655433220                   011123466677654333 333 4 


Q ss_pred             CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEE
Q 010296          241 DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLT  320 (513)
Q Consensus       241 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  320 (513)
                      +|.|+.|-....-.+..-..-...|..++....  +.+.-. +|.|+.|-....-.+.........|..++.-....++ 
T Consensus        80 ~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~-  155 (282)
T 3qhy_B           80 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA-  155 (282)
T ss_dssp             TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE-
T ss_pred             CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE-
Confidence            899999975532211111111346777776544  344444 8999999765432222222234457777654433333 


Q ss_pred             EeCCCcEEEEecCCCeeeE-EecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCC
Q 010296          321 VGRDRSMQLWKVPEESRLV-FRAPASSLECCCFISNDEFLSGSDDGSIELWSLLR  374 (513)
Q Consensus       321 ~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~  374 (513)
                      .. +|.|+.|-......+. .......|..++.-....++.  .+|.|..|=...
T Consensus       156 l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~  207 (282)
T 3qhy_B          156 VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNR  207 (282)
T ss_dssp             EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCT
T ss_pred             EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE--ECCeEEEEECCC
Confidence            33 7889888765432221 111123455555544434445  589999987544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.05  E-value=0.76  Score=41.02  Aligned_cols=135  Identities=6%  Similarity=0.034  Sum_probs=71.1

Q ss_pred             CCCCEEEEEe--CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC--------------CcEEEEeCCC
Q 010296          230 SDGRYLASGG--LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD--------------RTVKIWNAED  293 (513)
Q Consensus       230 ~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~  293 (513)
                      +++.+|+...  .++.|+..+..... ...+...    .+--+++++.+|+-+...              ..|+..++..
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            4567766654  24666666654333 3333321    234567889888866442              4677777776


Q ss_pred             CceeEEeecccCCeEEEEeeCCC-eEEEEe----CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCCC
Q 010296          294 RAYISTLFGHQSEVLTIDCLRKE-RVLTVG----RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDGS  366 (513)
Q Consensus       294 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~  366 (513)
                      .+... +..  ...  ..+++++ .++-+.    ....|+..++.......+..+..    ..+++.+. |+ +......
T Consensus        98 ~~~~~-l~~--~~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~  168 (302)
T 3s25_A           98 HGSTV-LDP--DPC--IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQ  168 (302)
T ss_dssp             CCCEE-EEC--SCE--EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCC
T ss_pred             CcceE-eec--CCc--cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCce
Confidence            65332 221  122  2455544 444443    34456666666544443333322    33555554 33 4444677


Q ss_pred             EEEEecCCCCee
Q 010296          367 IELWSLLRKKPV  378 (513)
Q Consensus       367 i~iwd~~~~~~~  378 (513)
                      |.+.++..+...
T Consensus       169 Iy~~~l~g~~~~  180 (302)
T 3s25_A          169 LYRYDTASQSEA  180 (302)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCCEE
Confidence            888887665543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.90  E-value=0.93  Score=40.79  Aligned_cols=139  Identities=8%  Similarity=0.069  Sum_probs=68.2

Q ss_pred             EEEEEeCCCcEEEEeCCCcceee-eccCcCCCeEEEEEecCCCeEEEEeC----CC-------cEEEEeCCCCceeEEee
Q 010296          234 YLASGGLDRHIHLWDTRIQEHIQ-AFPGHRGPVSCLTFRQGTSELFSGSF----DR-------TVKIWNAEDRAYISTLF  301 (513)
Q Consensus       234 ~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~  301 (513)
                      +++.|+.  .+.+||..+.+... .+..........+...++..++.|+.    ++       .+.+||..+.+....-.
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            3444443  48899988776543 11111122223333456677777773    12       17788988765433211


Q ss_pred             ccc-CCeEEEEeeCCCeE-EEEeCC-------CcEEEEecCCCeeeEEecCCCCe--eEEEeecCCe-EEEEeC------
Q 010296          302 GHQ-SEVLTIDCLRKERV-LTVGRD-------RSMQLWKVPEESRLVFRAPASSL--ECCCFISNDE-FLSGSD------  363 (513)
Q Consensus       302 ~~~-~~v~~~~~~~~~~~-~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~-~~~~~~------  363 (513)
                      ... ..-.++... ++.+ +.++.+       ..+.+||+.+..-........+.  .+++. .++. ++.|+.      
T Consensus        96 ~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~  173 (318)
T 2woz_A           96 LPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKC  173 (318)
T ss_dssp             BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCB
T ss_pred             CCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCc
Confidence            111 111222233 4444 466643       35788888876544332211111  12222 4555 455553      


Q ss_pred             CCCEEEEecCCCC
Q 010296          364 DGSIELWSLLRKK  376 (513)
Q Consensus       364 dg~i~iwd~~~~~  376 (513)
                      -..+.+||+.+.+
T Consensus       174 ~~~~~~yd~~~~~  186 (318)
T 2woz_A          174 TNRVFIYNPKKGD  186 (318)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             cceEEEEcCCCCE
Confidence            2458888887764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.38  E-value=1.6  Score=40.03  Aligned_cols=65  Identities=18%  Similarity=0.301  Sum_probs=35.7

Q ss_pred             CCCEEEEEeC-CCcEEEEeCCC--cc--eeeecc-CcCCCeEEEEEecCCCeEEEEeC-C---------CcEEEEeCCCC
Q 010296          231 DGRYLASGGL-DRHIHLWDTRI--QE--HIQAFP-GHRGPVSCLTFRQGTSELFSGSF-D---------RTVKIWNAEDR  294 (513)
Q Consensus       231 ~~~~l~s~~~-dg~i~vwd~~~--~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~~  294 (513)
                      ++.+++.|+. ...+.+||+.+  .+  .+..+. ...... +++.. ++.+++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            5666677664 35688999863  22  222233 111111 22222 4566666665 2         46899999887


Q ss_pred             cee
Q 010296          295 AYI  297 (513)
Q Consensus       295 ~~~  297 (513)
                      +..
T Consensus        97 ~W~   99 (357)
T 2uvk_A           97 SWV   99 (357)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.07  E-value=1.7  Score=38.36  Aligned_cols=184  Identities=14%  Similarity=0.114  Sum_probs=98.5

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG  239 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  239 (513)
                      ..|..|+.......+ . . ||.|..|=......+-.               |    ..-...|..|+.....  .+.-.
T Consensus        63 ~~i~~ia~G~~hs~~-l-~-~G~v~~wG~n~~Gqlg~---------------P----~~~~~~v~~ia~G~~h--s~al~  118 (282)
T 3qhy_B           63 SGVDAIAAGNYHSLA-L-K-DGEVIAWGGNEDGQTTV---------------P----AEARSGVDAIAAGAWA--SYALK  118 (282)
T ss_dssp             SCCCEEEECSSEEEE-E-E-TTEEEEEECCTTSTTCC---------------C----GGGSSSEEEEEEETTE--EEEEE
T ss_pred             CCEEEEEeCCCEEEE-E-E-CCEEEEeeCCCCCCCCC---------------C----cccCCCeEEEECcCCE--EEEEe
Confidence            357777765543333 3 4 89999987654333210               0    0112357777776443  33334


Q ss_pred             CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE
Q 010296          240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL  319 (513)
Q Consensus       240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  319 (513)
                       +|.|+.|-......+..-......|..++....  +.+.-. +|.|+.|-......+.........|..++.-....++
T Consensus       119 -~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~a  194 (282)
T 3qhy_B          119 -DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLA  194 (282)
T ss_dssp             -TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE
T ss_pred             -CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEE
Confidence             899999976542222111112345666665433  233333 7999999765432222111223567777765444444


Q ss_pred             EEeCCCcEEEEecCCCeeeE-EecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCC
Q 010296          320 TVGRDRSMQLWKVPEESRLV-FRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       320 ~~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~  375 (513)
                      .  .+|.|+.|-......+- -......|..++.-....++..  +|.|..|=....
T Consensus       195 l--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          195 L--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             E--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE--TTEEEEESTTCC
T ss_pred             E--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE--CCEEEEecCCCC
Confidence            4  58999999765432221 1111234556655444444444  899999876543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.95  E-value=1.6  Score=44.27  Aligned_cols=146  Identities=12%  Similarity=0.115  Sum_probs=78.7

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCCC--cEEEEeCCCCceeEEe
Q 010296          231 DGRYLASGGLD------RHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFDR--TVKIWNAEDRAYISTL  300 (513)
Q Consensus       231 ~~~~l~s~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~  300 (513)
                      ++.+++.|+.+      ..+.+||+.+.....  .+...... .+++...++..++.|+.++  .+.+||+.+......-
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            67777887743      357889988754332  22211111 2233324777778887654  7999999887643322


Q ss_pred             e-----cccCCeEEEEeeCC-CeEE-EEeC--C-----CcEEEEecCCCe------eeEEec---CCCCeeEEEeecCCe
Q 010296          301 F-----GHQSEVLTIDCLRK-ERVL-TVGR--D-----RSMQLWKVPEES------RLVFRA---PASSLECCCFISNDE  357 (513)
Q Consensus       301 ~-----~~~~~v~~~~~~~~-~~~~-~~~~--d-----~~i~iwd~~~~~------~~~~~~---~~~~v~~~~~~~~~~  357 (513)
                      .     .......++.+..+ +.++ .||.  +     ..+.+||+.+..      -.....   ....-.+++...++.
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~  609 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK  609 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence            1     11111233444544 5555 5554  2     458899998776      222111   111122334444254


Q ss_pred             -EEEEeC--------CCCEEEEecCCCCe
Q 010296          358 -FLSGSD--------DGSIELWSLLRKKP  377 (513)
Q Consensus       358 -~~~~~~--------dg~i~iwd~~~~~~  377 (513)
                       ++.|+.        ...|.+||+.+.+-
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence             566664        34588888877643

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.11  E-value=4.2  Score=38.75  Aligned_cols=100  Identities=9%  Similarity=0.039  Sum_probs=56.9

Q ss_pred             cEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCcc---eeeecc---------CcCCCeEEEEEecC---CCeEEEE-eC--
Q 010296          222 HILALAVSSDGR-YLASGGLDRHIHLWDTRIQE---HIQAFP---------GHRGPVSCLTFRQG---TSELFSG-SF--  282 (513)
Q Consensus       222 ~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~l~~~-~~--  282 (513)
                      ..+.|+|.|+|. .|+++...|.|++++.....   .+..+.         ........|+|+|+   ..+|++. +.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            467899999996 45556678999999754221   222221         11456889999996   2334332 21  


Q ss_pred             C----------CcEEEEeCCCC----------ceeEEee--cccCCeEEEEeeCCCeEEEE
Q 010296          283 D----------RTVKIWNAEDR----------AYISTLF--GHQSEVLTIDCLRKERVLTV  321 (513)
Q Consensus       283 d----------g~i~iwd~~~~----------~~~~~~~--~~~~~v~~~~~~~~~~~~~~  321 (513)
                      +          ..|.-|.+..+          +.+..+.  ........|.|.|++.|+.+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~  155 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYII  155 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEE
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEE
Confidence            1          13444655421          2222222  11224578999999977643

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=93.85  E-value=4.1  Score=37.82  Aligned_cols=142  Identities=10%  Similarity=-0.001  Sum_probs=70.7

Q ss_pred             ccEEEEEEcC--CCCEEEEEeCCC----cEEEEeCCCcceeeecc------C--------cCCCeEEEEEecC--CCeEE
Q 010296          221 KHILALAVSS--DGRYLASGGLDR----HIHLWDTRIQEHIQAFP------G--------HRGPVSCLTFRQG--TSELF  278 (513)
Q Consensus       221 ~~v~~~~~s~--~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~------~--------~~~~v~~~~~~~~--~~~l~  278 (513)
                      ..|.+|++.|  .+.+++ ++..|    .|...+ ..++.-..+.      .        ....|.++++.|.  ...|+
T Consensus        55 ~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             SEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            4699999998  444444 44344    344432 2232211111      1        1124778898872  45677


Q ss_pred             EEeCCCcEEEEeCCCCceeEEeec-------------------ccCCeEEEEeeC--CCeEEEEeCCCcEEEEecCCCee
Q 010296          279 SGSFDRTVKIWNAEDRAYISTLFG-------------------HQSEVLTIDCLR--KERVLTVGRDRSMQLWKVPEESR  337 (513)
Q Consensus       279 ~~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~  337 (513)
                      +++..+.|...+-. ++.-..+..                   ....+.+|.+.|  .+.++++...+.|...+-....-
T Consensus       133 ~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW  211 (394)
T 3b7f_A          133 AGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDW  211 (394)
T ss_dssp             EEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSC
T ss_pred             EEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCc
Confidence            76666666555322 222111110                   123467888887  34666665555454443222111


Q ss_pred             eEEec--C-----------CCCeeEEEeecC--CeEEEEeCCC
Q 010296          338 LVFRA--P-----------ASSLECCCFISN--DEFLSGSDDG  365 (513)
Q Consensus       338 ~~~~~--~-----------~~~v~~~~~~~~--~~~~~~~~dg  365 (513)
                      .....  .           ...+.++.+.|.  +.++++...+
T Consensus       212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            11110  0           123778888886  5666665544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.57  E-value=5.6  Score=38.41  Aligned_cols=71  Identities=4%  Similarity=-0.010  Sum_probs=49.1

Q ss_pred             cCCeEEEEeeCCCeEEEEe--CCCcEEEEecCCCe------e-------eEEecCCCCeeEEEeecCCe-EEEEeCCCCE
Q 010296          304 QSEVLTIDCLRKERVLTVG--RDRSMQLWKVPEES------R-------LVFRAPASSLECCCFISNDE-FLSGSDDGSI  367 (513)
Q Consensus       304 ~~~v~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~------~-------~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i  367 (513)
                      ......+..+|+|+.+.++  .+.++.++++....      .       .............+|.++|. +.+-.-|..|
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence            3444567888999766443  58899999987421      1       12223445677889999996 4466689999


Q ss_pred             EEEecCC
Q 010296          368 ELWSLLR  374 (513)
Q Consensus       368 ~iwd~~~  374 (513)
                      .-|++..
T Consensus       402 vkWni~~  408 (638)
T 3sbq_A          402 VKWNMEE  408 (638)
T ss_dssp             EEEEHHH
T ss_pred             EEEeccH
Confidence            9999865

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.30  E-value=5.8  Score=35.25  Aligned_cols=138  Identities=9%  Similarity=0.071  Sum_probs=73.3

Q ss_pred             EEEEcCCCCEEEEEeCC--------------CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe----CCCcE
Q 010296          225 ALAVSSDGRYLASGGLD--------------RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS----FDRTV  286 (513)
Q Consensus       225 ~~~~s~~~~~l~s~~~d--------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i  286 (513)
                      +--+++++.+|+-+...              ..|+..++..++......   ..  +..|+++++.|+-..    ....|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceE
Confidence            34567888888877543              367777777665332222   11  236778888888665    34456


Q ss_pred             EEEeCCCCceeEEeecccCCeEEEEeeCCC-eEEEEe-CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-eEEEEeC
Q 010296          287 KIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVG-RDRSMQLWKVPEESRLVFRAPASSLECCCFISND-EFLSGSD  363 (513)
Q Consensus       287 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~  363 (513)
                      +..++.... ...+..+..    ..+.+++ .++-.+ ....|.+.++.......+...  ... ..+.|.+ .|+-...
T Consensus       132 y~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--~~~-~~~~P~g~~iy~t~~  203 (302)
T 3s25_A          132 YRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--NCY-KPVVLDDTNVYYMDV  203 (302)
T ss_dssp             EEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--CEE-EEEEEETTEEEEEEG
T ss_pred             EEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--Ccc-ceeeecCCEEEEEEc
Confidence            666665433 344433322    3345544 444333 357888888877655443321  222 2355655 3443322


Q ss_pred             C--CCEEEEecCCC
Q 010296          364 D--GSIELWSLLRK  375 (513)
Q Consensus       364 d--g~i~iwd~~~~  375 (513)
                      .  ..|..-++...
T Consensus       204 ~~~~~I~~~~ldG~  217 (302)
T 3s25_A          204 NRDNAIVHVNINNP  217 (302)
T ss_dssp             GGTTEEEEECSSSC
T ss_pred             CCCcEEEEEECCCC
Confidence            2  24444444433

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.17  E-value=7.3  Score=36.10  Aligned_cols=98  Identities=4%  Similarity=-0.120  Sum_probs=49.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCC-cceeeec--cCcCCCeEEEEEec-CCCeEEEEeCCC----cEEEEeCCCCceeEEee--
Q 010296          232 GRYLASGGLDRHIHLWDTRI-QEHIQAF--PGHRGPVSCLTFRQ-GTSELFSGSFDR----TVKIWNAEDRAYISTLF--  301 (513)
Q Consensus       232 ~~~l~s~~~dg~i~vwd~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~--  301 (513)
                      ...|++|+..| +.+++... +..-..+  ......|.+|++.| +...|++++..|    .|...+ ..++.-..+.  
T Consensus        22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~   99 (394)
T 3b7f_A           22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP   99 (394)
T ss_dssp             CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred             CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence            34677777766 55555332 2211111  11235699999998 334455555454    444432 2222211111  


Q ss_pred             ----c--------ccCCeEEEEeeC---CCeEEEEeCCCcEEEEe
Q 010296          302 ----G--------HQSEVLTIDCLR---KERVLTVGRDRSMQLWK  331 (513)
Q Consensus       302 ----~--------~~~~v~~~~~~~---~~~~~~~~~d~~i~iwd  331 (513)
                          .        ....|.++++.|   .+.+++++..+.|...+
T Consensus       100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~  144 (394)
T 3b7f_A          100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST  144 (394)
T ss_dssp             CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES
T ss_pred             ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc
Confidence                0        112467788875   46777776666665553

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=92.11  E-value=11  Score=38.10  Aligned_cols=237  Identities=9%  Similarity=0.079  Sum_probs=116.8

Q ss_pred             EEEEE-EcCCCCEEEEEe-----CCCcEEEEeCCCcceee-ecc-CcCC------CeEEEEEecCCCeEEEE--------
Q 010296          223 ILALA-VSSDGRYLASGG-----LDRHIHLWDTRIQEHIQ-AFP-GHRG------PVSCLTFRQGTSELFSG--------  280 (513)
Q Consensus       223 v~~~~-~s~~~~~l~s~~-----~dg~i~vwd~~~~~~~~-~~~-~~~~------~v~~~~~~~~~~~l~~~--------  280 (513)
                      ...+. ++|++++++.+-     .-..|+++|+.+++.+. .|. .-..      ....++|..+...+++.        
T Consensus       131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred             EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence            44555 889998877542     22469999999998763 222 0001      11345787444444432        


Q ss_pred             --eCCCcEEEEeCCCCce--eEEeecccCCe-EEEEeeCCCe------EEEEeC---CCcEEEEecCC--CeeeEEecCC
Q 010296          281 --SFDRTVKIWNAEDRAY--ISTLFGHQSEV-LTIDCLRKER------VLTVGR---DRSMQLWKVPE--ESRLVFRAPA  344 (513)
Q Consensus       281 --~~dg~i~iwd~~~~~~--~~~~~~~~~~v-~~~~~~~~~~------~~~~~~---d~~i~iwd~~~--~~~~~~~~~~  344 (513)
                        +....|+.|.+.+...  ...+.+....+ .....++++.      +++.+.   ...+++.+...  +....+..+.
T Consensus       211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  290 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS  290 (711)
T ss_dssp             TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT
T ss_pred             cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC
Confidence              1135688898876532  23343333333 2233344432      333332   24456656543  2222222222


Q ss_pred             CCeeEEEeecCCeEEEE-----------eCCCCEEEEecCCCC-------eeEE-eecCCCcccCCCCcccCcCcccccc
Q 010296          345 SSLECCCFISNDEFLSG-----------SDDGSIELWSLLRKK-------PVYI-VKNAHPLLDGLKNFEQDEGKISNGH  405 (513)
Q Consensus       345 ~~v~~~~~~~~~~~~~~-----------~~dg~i~iwd~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~  405 (513)
                      .  ..+..+..+.++..           ...+.|.+.++.++.       .... +.                       
T Consensus       291 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------------  345 (711)
T 4hvt_A          291 D--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT-----------------------  345 (711)
T ss_dssp             T--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC-----------------------
T ss_pred             c--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC-----------------------
Confidence            1  11233445554331           135566666665431       1111 11                       


Q ss_pred             CCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc--EEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEE
Q 010296          406 SENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS--VRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLI  483 (513)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  483 (513)
                                   ......+..+.+..+ .++++...++.  |.++++.++......+..++..+.+..+.+++++..++
T Consensus       346 -------------~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~  411 (711)
T 4hvt_A          346 -------------PTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEAL  411 (711)
T ss_dssp             -------------CCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEE
T ss_pred             -------------CCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEE
Confidence                         112234888888876 57777777764  66777665521122212233345677777777775444


Q ss_pred             -EEecC--CCcccccccC
Q 010296          484 -AGVGQ--EPRLGRWGHL  498 (513)
Q Consensus       484 -~~~~~--dg~v~~W~~~  498 (513)
                       +.++.  -+.+..++..
T Consensus       412 ~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          412 ITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEEECSSSCCEEEEECTT
T ss_pred             EEEecCCCCCEEEEEeCC
Confidence             33332  2556555543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.67  E-value=9.4  Score=36.31  Aligned_cols=116  Identities=12%  Similarity=0.055  Sum_probs=61.1

Q ss_pred             CCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC----CCE
Q 010296          160 QSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD----GRY  234 (513)
Q Consensus       160 ~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~  234 (513)
                      ..-..|+|.|++. .|+++...|.|++++.........+......+.       .............|+|+|+    +.+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~-------~g~~~~~e~Gllgia~~P~f~~n~~l   86 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQ-------SGIKGGDERGLLSLAFHPNYKKNGKL   86 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBC-------CCCSSSCCCSEEEEEECTTHHHHCEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceec-------cCccccCCCcceeeEeCCCCcCCCEE
Confidence            3457899999996 566667889999997543211111000000000       0000122456889999996    443


Q ss_pred             EEEEeC--C----------CcEEEEeCCC----------cceeeecc--CcCCCeEEEEEecCCCeEEEEeC
Q 010296          235 LASGGL--D----------RHIHLWDTRI----------QEHIQAFP--GHRGPVSCLTFRQGTSELFSGSF  282 (513)
Q Consensus       235 l~s~~~--d----------g~i~vwd~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  282 (513)
                      .++-+.  +          ..|.-|.+..          .+.+..+.  ........|.|.|+|.+.++.+.
T Consensus        87 Yv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           87 YVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             EEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             EEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            333221  1          1344455532          12222222  12234688999999987666554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.50  E-value=11  Score=36.57  Aligned_cols=103  Identities=13%  Similarity=0.146  Sum_probs=62.2

Q ss_pred             EEEEeCCceEEEEeCCCCccccccCC--------------ChhhhccCCCCCCCCCCCCCcccEEEEEEcC---CCCEEE
Q 010296          174 GFSASKDGSILHWDVSSGKGVKYLWP--------------SEEVLKSHGAKDPQGRATKQSKHILALAVSS---DGRYLA  236 (513)
Q Consensus       174 l~t~~~dg~v~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~  236 (513)
                      |.+|+..|.|+|+=+.+++.+..+.-              +...+...+  ... .-..|.   ..+.+..   ||++|+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~--~~~-~gD~HH---p~~S~tdg~yDGrylf  146 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSA--KFL-NGDCHH---PHISMTDGKYDGKYLF  146 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGG--GCC-CCCCCC---CEEEEETTEEEEEEEE
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCC--Ccc-CCCcCC---CcccccCCeeeeEEEE
Confidence            56899999999999999988776520              001111000  000 001111   1234432   678888


Q ss_pred             EEe-CCCcEEEEeCCCcceeeeccC-cCCCeEEEEEe--cCCCeEEEEeC
Q 010296          237 SGG-LDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFR--QGTSELFSGSF  282 (513)
Q Consensus       237 s~~-~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~  282 (513)
                      .-. .+..|-..++...++-..+.- ....+..+.|-  |+..|+++++.
T Consensus       147 iNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e  196 (638)
T 3sbq_A          147 INDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAE  196 (638)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEEC
T ss_pred             EecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecce
Confidence            776 456788888887766444432 55678888885  78888887764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.70  E-value=15  Score=38.64  Aligned_cols=31  Identities=3%  Similarity=0.000  Sum_probs=27.9

Q ss_pred             eEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          424 WVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       424 ~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .+.+++..++..++++-+.|+++|||++.++
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~  267 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN  267 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTT
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCC
Confidence            3778888888899999999999999999887

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=86.07  E-value=31  Score=34.88  Aligned_cols=196  Identities=11%  Similarity=0.072  Sum_probs=99.2

Q ss_pred             CeEEEE-ECCCCCeEEEE-e----CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCc-----ccEEEEEEc
Q 010296          161 SVTAVA-LSEDDSKGFSA-S----KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQS-----KHILALAVS  229 (513)
Q Consensus       161 ~V~~~~-~s~~~~~l~t~-~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s  229 (513)
                      ....+. ++|++++++.+ +    .-..|+++|+.+++.+.--+.            +    ....     .....++|.
T Consensus       130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~------------~----~~k~~~~~~~~~~~~~W~  193 (711)
T 4hvt_A          130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE------------P----ITNSGKLLEGKFTYPTWI  193 (711)
T ss_dssp             EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC------------C----BCTTCCBCCEETCCEEEE
T ss_pred             EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc------------c----ccccccccccccceeeEE
Confidence            445555 89999988754 2    234699999999886542100            0    0000     011234666


Q ss_pred             CCCCEEEEE----------eCCCcEEEEeCCCcc--eeeeccCcCCCe-EEEEEecCCCe-----EEEEeC---CCcEEE
Q 010296          230 SDGRYLASG----------GLDRHIHLWDTRIQE--HIQAFPGHRGPV-SCLTFRQGTSE-----LFSGSF---DRTVKI  288 (513)
Q Consensus       230 ~~~~~l~s~----------~~dg~i~vwd~~~~~--~~~~~~~~~~~v-~~~~~~~~~~~-----l~~~~~---dg~i~i  288 (513)
                      .+..++++.          +.-..|+.|.+-+..  -...+.+....+ .....++++++     +++.+.   ...+++
T Consensus       194 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  273 (711)
T 4hvt_A          194 NKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYI  273 (711)
T ss_dssp             ETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEE
T ss_pred             CCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEE
Confidence            444444432          112568888876542  223343333333 23445566653     444332   245666


Q ss_pred             EeCCC--CceeEEeecccCCeEEEEeeCCCeEEEEe-----------CCCcEEEEecCCCe--------eeE-E-ecCCC
Q 010296          289 WNAED--RAYISTLFGHQSEVLTIDCLRKERVLTVG-----------RDRSMQLWKVPEES--------RLV-F-RAPAS  345 (513)
Q Consensus       289 wd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~d~~i~iwd~~~~~--------~~~-~-~~~~~  345 (513)
                      .++..  ++. ..+.....  ..+..+.++.++...           ..+.|...++....        ... + .....
T Consensus       274 ~~~~~~~~~~-~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (711)
T 4hvt_A          274 LDTKYKNLKL-QKINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE  350 (711)
T ss_dssp             EECSSSSCEE-EECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE
T ss_pred             EcCCCCCCcc-eEeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC
Confidence            66553  332 22221111  122334455554421           45678888886531        112 2 22334


Q ss_pred             CeeEEEeecCCeEEEEeCCCC--EEEEecCCC
Q 010296          346 SLECCCFISNDEFLSGSDDGS--IELWSLLRK  375 (513)
Q Consensus       346 ~v~~~~~~~~~~~~~~~~dg~--i~iwd~~~~  375 (513)
                      .+..+.+..+..+++...++.  |.++++.++
T Consensus       351 ~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g  382 (711)
T 4hvt_A          351 VFNFISTTKDRVFLATYDNVVAKVVTFTLENE  382 (711)
T ss_dssp             EEEEEEECSSCEEEEEEETTEEEEEEECEETT
T ss_pred             eEEEEEEECCEEEEEEEECCEEEEEEEECCCC
Confidence            566778887766667777765  556666555

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.28  E-value=5.6  Score=41.94  Aligned_cols=39  Identities=15%  Similarity=0.233  Sum_probs=34.0

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeec
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF  258 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  258 (513)
                      ...+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus       235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            346788888889999999999999999999999987764

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=81.73  E-value=13  Score=37.22  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=30.0

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc
Q 010296          221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP  259 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  259 (513)
                      ..|.++.+.  ..+|++-+.|.++++|++.+++++....
T Consensus       222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~D  258 (729)
T 3f7f_A          222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYD  258 (729)
T ss_dssp             CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence            456666554  6799999999999999999999876654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=80.53  E-value=6.6  Score=38.53  Aligned_cols=62  Identities=16%  Similarity=0.255  Sum_probs=43.1

Q ss_pred             EEEEEEecCCCEEEEecCC----------CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEe
Q 010296          425 VSSVTVCGGSDLAASGAGN----------GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGV  486 (513)
Q Consensus       425 i~~~~~s~~~~~l~~g~~d----------g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~  486 (513)
                      .-.|+|+|.|.++++-..+          +.-.+|-.......+..+...+....++.++|+||++.|++..
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence            6789999999977765432          2223444333323556666666788999999999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	513
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-26
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-20
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-22
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-20
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-21
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-21
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-18
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-16
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-11
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-04
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.001
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (262), Expect = 8e-26
 Identities = 58/345 (16%), Positives = 116/345 (33%), Gaps = 83/345 (24%)

Query: 151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYL------------- 197
           E   L  HR  VT V      S   SAS+D +I  WD  +G   + L             
Sbjct: 9   EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 198 ----------WPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLW 247
                           L      +          ++ ++++  +G ++ S   D+ I +W
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 248 DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307
           + +    ++ F GHR  V  +   Q  + + S S D+TV++W    +   + L  H+  V
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 308 LTIDCLRKERVLTV---------------------GRDRSMQLWKVPEESRL-VFRAPAS 345
             I    +    ++                      RD+++++W V     L       +
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNG 404
            +    F S  +F+ S +DD ++ +W    K+ +  +                       
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN---------------------A 287

Query: 405 HSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW 449
           H                  +V+S+     +    +G+ + +V++W
Sbjct: 288 HE----------------HFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (253), Expect = 1e-24
 Identities = 38/192 (19%), Positives = 85/192 (44%), Gaps = 2/192 (1%)

Query: 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSE 201
           ++ + +     +    HR+ V  V  ++D +   S S D ++  W V++ +    L    
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185

Query: 202 EVLKSHG-AKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG 260
            V++    A +    +  ++           G +L SG  D+ I +WD      +    G
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245

Query: 261 HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL- 319
           H   V  + F  G   + S + D+T+++W+ +++  + TL  H+  V ++D  +    + 
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305

Query: 320 TVGRDRSMQLWK 331
           T   D+++++W+
Sbjct: 306 TGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.0 bits (219), Expect = 3e-20
 Identities = 54/311 (17%), Positives = 101/311 (32%), Gaps = 76/311 (24%)

Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS 305
            W  R  E   A  GHR PV+ + F    S + S S D T+K+W+ E   +  TL GH  
Sbjct: 2   EWIPRPPE-KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60

Query: 306 EVLTIDCLR-------------------------------------------KERVLTVG 322
            V  I                                                + +++  
Sbjct: 61  SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120

Query: 323 RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYI 380
           RD+++++W+V     +               + D     S S+D ++ +W +  K+    
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 180

Query: 381 VK---NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY--------------- 422
           ++   +    +             + G     +  PG +  S +                
Sbjct: 181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240

Query: 423 -------SWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPL-VGFVNSLA 474
                  +WV  V    G     S A + ++R+W  +++    + +  L     FV SL 
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK----RCMKTLNAHEHFVTSLD 296

Query: 475 FAKSGQFLIAG 485
           F K+  +++ G
Sbjct: 297 FHKTAPYVVTG 307

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.8 bits (239), Expect = 2e-22
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAK 210
           E      H+ SV +V  + D     S S D S+  W++ +               +  + 
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK-------TPNSG 298

Query: 211 DPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTF 270
             +         +L++A + +  Y+ SG  DR +  WD +    +    GHR  V  +  
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358

Query: 271 RQGTSE------LFSGSFDRTVKIWNAE 292
             G+S         +GS D   +IW  +
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.4 bits (225), Expect = 2e-20
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 31/177 (17%)

Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234
            + S D ++  WD  +G  V+ L    E    H               + ++  + DG+ 
Sbjct: 221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGH------------KDSVYSVVFTRDGQS 268

Query: 235 LASGGLDRHIHLWDTR------------IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF 282
           + SG LDR + LW+ +                   + GH+  V  +   Q    + SGS 
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328

Query: 283 DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-------ERVLTVGRDRSMQLWKV 332
           DR V  W+ +    +  L GH++ V+++                T   D   ++WK 
Sbjct: 329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.6 bits (210), Expect = 1e-18
 Identities = 64/375 (17%), Positives = 116/375 (30%), Gaps = 101/375 (26%)

Query: 146 PEATDEFRV----LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSE 201
           P    E  V     L H   V  V  S D     +   + +   + VS G  V  L    
Sbjct: 45  PALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDS 103

Query: 202 EVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL--------------------- 240
              K          +     +I ++  S DG++LA+G                       
Sbjct: 104 AANKD-PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 162

Query: 241 ---------------------DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFS 279
                                DR + +WD R  +         G  +          + +
Sbjct: 163 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222

Query: 280 GSFDRTVKIWNAEDRAYISTLF-------GHQSEVLTIDCLRKER-VLTVGRDRSMQLWK 331
           GS DR V++W++E    +  L        GH+  V ++   R  + V++   DRS++LW 
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 332 VPEESRLVFRAPASSLE-------------CCCFISNDEFL-SGSDDGSIELWSLLRKKP 377
           +   +        +S                     NDE++ SGS D  +  W      P
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342

Query: 378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA 437
           + +++                     GH            S  + +  +  ++    ++ 
Sbjct: 343 LLMLQ---------------------GHRN----------SVISVAVANGSSLGPEYNVF 371

Query: 438 ASGAGNGSVRLWAIE 452
           A+G+G+   R+W  +
Sbjct: 372 ATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (161), Expect = 1e-12
 Identities = 51/315 (16%), Positives = 96/315 (30%), Gaps = 57/315 (18%)

Query: 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF------------------PGHRGP 264
           +  +  S+DG YLA+G  ++   ++       +                     P     
Sbjct: 65  VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123

Query: 265 VSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRD 324
           +  + F      L +G+ DR ++IW+ E+R  +  L GH+ ++ ++D       L  G  
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183

Query: 325 RSMQLWKVPEESRLVFRAPASSLECCCFIS---NDEFLSGSDDGSIELWSLLRKKPVYIV 381
                       +               +S        +GS D ++ +W       V  +
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243

Query: 382 KNAHPLLDGLKN------FEQD---------EGKISNGHSENGNLNPGSYHSSSAY---- 422
            + +    G K+      F +D         +  +   + +N N    S   +S      
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 423 -----SWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPL-------VGFV 470
                 +V SV      +   SG+ +  V  W  +S      PL  L         V   
Sbjct: 304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG----NPLLMLQGHRNSVISVAVA 359

Query: 471 NSLAFAKSGQFLIAG 485
           N  +          G
Sbjct: 360 NGSSLGPEYNVFATG 374

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.8 bits (234), Expect = 6e-22
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           +    H   + A+    + +   + S D +   +D+ + + +                  
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH------------- 266

Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                     I +++ S  GR L +G  D + ++WD    +      GH   VSCL    
Sbjct: 267 ----DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 273 GTSELFSGSFDRTVKIWN 290
               + +GS+D  +KIWN
Sbjct: 323 DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.7 bits (226), Expect = 6e-21
 Identities = 66/365 (18%), Positives = 107/365 (29%), Gaps = 79/365 (21%)

Query: 127 EQLEESGRVRRVIASRVQKPEATDEF-----------RVLLKHRQSVTAVALSEDDSKGF 175
           EQL+   R  R   +     + T+             R L  H   + A+    D     
Sbjct: 12  EQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLV 71

Query: 176 SASKDGSILHWDVSSGKGVKYL--------------------------WPSEEVLKSHGA 209
           SAS+DG ++ WD  +   V  +                            S   LK+   
Sbjct: 72  SASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131

Query: 210 KDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLT 269
                R        L+     D   + +   D    LWD    +    F GH G V  L+
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191

Query: 270 FRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRD----R 325
               T    SG+ D + K+W+  +     T  GH+S++  I           G D    R
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251

Query: 326 SMQLWKVPEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIVKNA 384
              L    E            +    F  +   L +G DD +  +W  L+     ++   
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-- 309

Query: 385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG 444
                              GH                 + VS + V       A+G+ + 
Sbjct: 310 -------------------GHD----------------NRVSCLGVTDDGMAVATGSWDS 334

Query: 445 SVRLW 449
            +++W
Sbjct: 335 FLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.6 bits (205), Expect = 3e-18
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 5/145 (3%)

Query: 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKI--W 289
            R   SG  D    LWD R     Q F GH   ++ + F    +   +GS D T ++   
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 290 NAEDRAYISTLFGHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL-VFRAPASSL 347
            A+      +       + ++   +  R +L    D +  +W   +  R  V     + +
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315

Query: 348 ECCCFISNDEFL-SGSDDGSIELWS 371
            C     +   + +GS D  +++W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 2e-15
 Identities = 46/299 (15%), Positives = 93/299 (31%), Gaps = 28/299 (9%)

Query: 210 KDPQGRATKQSKHIL--------ALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGH 261
            DP GR   +++  L        A+   +D R L S   D  + +WD+     + A P  
Sbjct: 37  IDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96

Query: 262 RGPVSCLTFRQGTSELFSGSFDRTVKIWNAED----RAYISTLFGHQSEVLTIDCLRKER 317
              V    +    + +  G  D    I+N +           L GH   +     L   +
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156

Query: 318 VLTVGRDRS--MQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK 375
           ++T   D +  +   +  +++          +          F+SG+ D S +LW +   
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216

Query: 376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSEN--------GNLNPGSYHSSSAYSWVSS 427
                       ++ +  F  +    + G  +          +    +Y   +    ++S
Sbjct: 217 MCRQTFTGHESDINAIC-FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275

Query: 428 VTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPL-VGFVNSLAFAKSGQFLIAG 485
           V+      L  +G  + +  +W              L      V+ L     G  +  G
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATG 330

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWD 187
            V      D   VL  H   V+ + +++D     + S D  +  W+
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (226), Expect = 5e-21
 Identities = 59/355 (16%), Positives = 124/355 (34%), Gaps = 63/355 (17%)

Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYL--------------- 197
           +VL  H   V    L    ++  S S D ++  W   +GK ++ L               
Sbjct: 10  KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68

Query: 198 ----WPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE 253
                 ++  LK   A+  +   T          +    + + SG  D  + +WD    +
Sbjct: 69  IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128

Query: 254 HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL 313
            +    GH   V C   +     + SG++D  VK+W+ E    + TL GH +  +     
Sbjct: 129 CLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQF 185

Query: 314 RKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLL 373
               V++   D S+++W V   + +       SL     + ++  +SG+ D ++++W + 
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 245

Query: 374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG 433
             + +  ++  +                               H S+             
Sbjct: 246 TGQCLQTLQGPN------------------------------KHQSAVTCL------QFN 269

Query: 434 SDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG---FVNSLAFAKSGQFLIAG 485
            +   + + +G+V+LW +++  + I+ L  L   G    V  +  + +      G
Sbjct: 270 KNFVITSSDDGTVKLWDLKTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.8 bits (205), Expect = 4e-18
 Identities = 34/284 (11%), Positives = 81/284 (28%), Gaps = 33/284 (11%)

Query: 223 ILALAVSSDGRYLASGGLDRHIHLWD--TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSG 280
           I   A + D   +A    +  +H+++        +     H G V+ + +   ++ + + 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 281 SFDRTVKIWNAED---RAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESR 337
             DR   +W  +    +  +  L  +++         +++       R + +    +E+ 
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 338 LVFRAPASS------LECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGL 391
                          L      ++    +GS D    ++S   K+               
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP------ 183

Query: 392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451
                                   + SSS+  WV  V         A  + + +V L   
Sbjct: 184 -------------WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230

Query: 452 ESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495
           + +               + ++ F      + AG    P L  +
Sbjct: 231 DKKMAVATLASE---TLPLLAVTFITESSLVAAGHDCFPVLFTY 271

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.1 bits (193), Expect = 1e-16
 Identities = 45/380 (11%), Positives = 101/380 (26%), Gaps = 93/380 (24%)

Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
             + ++  A ++D ++      +  +  ++ S  K     W     LK H          
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEH---------- 50

Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWD----------------------------- 248
             +  +  +  + D   + + G DR+ ++W                              
Sbjct: 51  --NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 108

Query: 249 -------------------TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIW 289
                                           R  V  L +   +  L +GS D   +I+
Sbjct: 109 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

Query: 290 NAEDRA------------------YISTLFGHQSEVLTIDCL-RKERVLTVGRDRSMQLW 330
           +A  +                    +         V  +       RV  V  D ++ L 
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 228

Query: 331 KVPEESRLV-FRAPASSLECCCFISNDEFLSGSDDGSIELWSL--------LRKKPVYIV 381
              ++  +    +    L    FI+    ++   D    L++            +     
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPK 288

Query: 382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA 441
           +++   L   + F+  + K S+  S        S H +S                  +  
Sbjct: 289 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 348

Query: 442 GNGSVRLWAIESETKDIQPL 461
            +G + +W + S    ++ L
Sbjct: 349 MDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 8e-04
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 4/72 (5%)

Query: 415 SYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPL-VGFVNSL 473
           +YHS      +S           A    N  V ++  E        ++ L    G V  +
Sbjct: 1   AYHSF-LVEPISCHAWNKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKEHNGQVTGV 57

Query: 474 AFAKSGQFLIAG 485
            +A     ++  
Sbjct: 58  DWAPDSNRIVTC 69

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 5e-17
 Identities = 44/279 (15%), Positives = 87/279 (31%), Gaps = 17/279 (6%)

Query: 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE 276
           ++ SK +  L    D + + SG  D  I +WD    E  +   GH G V CL + +    
Sbjct: 12  SETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 277 LFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES 336
             S      V   N  +              L  +                 +    + +
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129

Query: 337 RLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQ 396
                    +        +   +S S D +I++W+    + V  +        G+   + 
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR---GIACLQY 186

Query: 397 DEGKISNGHSENG----NLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE 452
            +  + +G S+N     ++  G+              +   +    SGA +G +++W + 
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246

Query: 453 SETKDIQPLYNLPLV------GFVNSLAFAKSGQFLIAG 485
           +      P   L L       G V  L F      +++ 
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS 283

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (191), Expect = 1e-16
 Identities = 59/321 (18%), Positives = 105/321 (32%), Gaps = 57/321 (17%)

Query: 151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYL------------- 197
                 +  + V    L  DD K  S  +D +I  WD ++ +  + L             
Sbjct: 7   RIHCRSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 198 ------WPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI 251
                   S+  ++       +   T        L +  +   + +   DR I +WD   
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 252 QEHI---QAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308
              I   +   GHR  V+ + F      + S S DRT+K+WN     ++ TL GH+  + 
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGI- 181

Query: 309 TIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIE 368
                R   V++   D +++LW +   + L        L  C    N   +SG+ DG I+
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 241

Query: 369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV 428
           +W L+             L            +    HS                  V  +
Sbjct: 242 VWDLVAALDPRAPAGTLCL------------RTLVEHS----------------GRVFRL 273

Query: 429 TVCGGSDLAASGAGNGSVRLW 449
                     S + + ++ +W
Sbjct: 274 QFDE--FQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 7e-11
 Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 30/144 (20%)

Query: 175 FSASKDGSILHWDVSSGK----------GVKYLWPSEEVLKSHG---------AKDPQGR 215
            SAS D +I  W+ S+ +          G+  L   + ++ S            +     
Sbjct: 152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 211

Query: 216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH---------IQAFPGHRGPVS 266
              +    L   +  D + + SG  D  I +WD               ++    H G V 
Sbjct: 212 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 271

Query: 267 CLTFRQGTSELFSGSFDRTVKIWN 290
            L F +    + S S D T+ IW+
Sbjct: 272 RLQFDEFQ--IVSSSHDDTILIWD 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 2e-15
 Identities = 36/317 (11%), Positives = 72/317 (22%), Gaps = 31/317 (9%)

Query: 190 SGKGVKYLWP-SEEVLKSHGAKDPQGRATKQSKH---ILALAVSSDGRYLASGGLDRHIH 245
           +  G     P   + L   G      R      H   + A+ +S+  R++ +GG    + 
Sbjct: 18  TADGQMQPVPFPPDALIGPGIPR-HARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVK 75

Query: 246 LWDTRIQEHIQA-----FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL 300
           +WD     +               +           L  G    T+ IW+          
Sbjct: 76  VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135

Query: 301 FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFI-----SN 355
               S                    S     V +                          
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195

Query: 356 DEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLL-------DGLKNFEQDEGKISNGHSEN 408
            +  +G  D ++  W L   + +        +                +   +   H   
Sbjct: 196 TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255

Query: 409 GNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG 468
            +      H     S V S+          S   +  +  W     T     ++      
Sbjct: 256 PDKYQLHLHE----SCVLSLKFAYCGKWFVSTGKDNLLNAW----RTPYGASIFQSKESS 307

Query: 469 FVNSLAFAKSGQFLIAG 485
            V S   +   ++++ G
Sbjct: 308 SVLSCDISVDDKYIVTG 324

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 2e-13
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFS 279
              +L+L  +  G++  S G D  ++ W T     I         V           + +
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT 323

Query: 280 GSFDRTVKIWN 290
           GS D+   ++ 
Sbjct: 324 GSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 4e-11
 Identities = 45/304 (14%), Positives = 86/304 (28%), Gaps = 24/304 (7%)

Query: 156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGR 215
           L H + V AV +S      ++    G +  WD+S       +  S+    +         
Sbjct: 48  LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV--SQLDCLNR-------- 96

Query: 216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS 275
                 +I +  +  DG  L  GG    + +WD                 +C        
Sbjct: 97  ----DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152

Query: 276 ELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDC---LRKERVLTVGRDRSMQLWKV 332
                S      I   +                           ++ T G D +++ W +
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212

Query: 333 PEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK 392
            E  +L      S +    +    E+L+   + S      + K   Y +      +  LK
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK 272

Query: 393 NFEQDEGKISNGHSENG----NLNPGS-YHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR 447
            F        +   +N         G+    S   S V S  +        +G+G+    
Sbjct: 273 -FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKAT 331

Query: 448 LWAI 451
           ++ +
Sbjct: 332 VYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 32/246 (13%), Positives = 80/246 (32%), Gaps = 29/246 (11%)

Query: 155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEV----------- 203
            L     + +  L  D        +  ++  WD+++         +              
Sbjct: 93  CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152

Query: 204 --------------LKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT 249
                         +     +    +    +     + +S+DG  L +GGLD  +     
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR-SWD 211

Query: 250 RIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLT 309
             +            +  L +   T E  +   + +       ++     L  H+S VL+
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS 270

Query: 310 IDCLRKER-VLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSI 367
           +      +  ++ G+D  +  W+ P  + +     +SS+  C    +D+++ +GS D   
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330

Query: 368 ELWSLL 373
            ++ ++
Sbjct: 331 TVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 16/116 (13%)

Query: 376 KPVYIVKNAHPLLDGLKN---FEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG 432
           KP Y   + H   DG      F  D   I  G   +        ++ +    V +VT+  
Sbjct: 10  KPAY---SFHVTADGQMQPVPFPPD-ALIGPGIPRHARQ----INTLNHGEVVCAVTISN 61

Query: 433 GSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG---FVNSLAFAKSGQFLIAG 485
            +    +G G G V++W I S   +  P+  L  +    ++ S      G  LI G
Sbjct: 62  PTRHVYTG-GKGCVKVWDI-SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 9/40 (22%), Positives = 14/40 (35%)

Query: 149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDV 188
                   K   SV +  +S DD    + S D     ++V
Sbjct: 296 YGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 72.3 bits (175), Expect = 1e-14
 Identities = 39/276 (14%), Positives = 85/276 (30%), Gaps = 10/276 (3%)

Query: 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQGTSELF 278
           +K I AL+ S+DG+ L S   + HI+ WD       + FP  H   ++ +          
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 279 SGSFD--RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES 336
               D  + V    +   +  +      S+ L +       +      + + ++   + +
Sbjct: 72  VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131

Query: 337 RLVFRAPASS-------LECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLD 389
            +     +S                + +       G+          P  I   A     
Sbjct: 132 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG 191

Query: 390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW 449
                     K+      N      +   +   + V+ V+    +   A+G+ + SV +W
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251

Query: 450 AIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG 485
            +   +     +     +  VNS+ +      + AG
Sbjct: 252 NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG 287

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.5 bits (139), Expect = 5e-10
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 1/83 (1%)

Query: 255 IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF-GHQSEVLTIDCL 313
            Q   GH   ++ L+       LFS   +  +  W+             H + +  I   
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 314 RKERVLTVGRDRSMQLWKVPEES 336
            K  + TV  D  +++       
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.6 bits (129), Expect = 9e-09
 Identities = 47/327 (14%), Positives = 89/327 (27%), Gaps = 63/327 (19%)

Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYL------------WPS 200
           +V   H +++TA++ S D    FSA  +G I  WD+S+G   +                S
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 201 EEVLKSHGAK------DPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT---RI 251
           +  L +             G     SK +     S       S   D  +          
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125

Query: 252 QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID 311
                         SC+        +  G  D  V ++     +            +T  
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185

Query: 312 CLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND-------EFLSGSDD 364
                    V  D+S ++      +        S       ++            +GS D
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 245

Query: 365 GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW 424
            S+ +W++ +     I+                   I   H+                S 
Sbjct: 246 NSVIVWNMNKPSDHPII-------------------IKGAHAM---------------SS 271

Query: 425 VSSVTVCGGSDLAASGAGNGSVRLWAI 451
           V+SV     + +  S   + +++ W +
Sbjct: 272 VNSVIWLNETTI-VSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.7 bits (111), Expect = 2e-06
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF- 301
              + +     H  ++  H   V+C+++      L +GS D +V +WN    +    +  
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264

Query: 302 --GHQSEVLTIDCLRKERVLTVGRDRSMQLWKVP 333
                S V ++  L +  +++ G+D +++ W VP
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.6 bits (176), Expect = 2e-14
 Identities = 26/303 (8%), Positives = 82/303 (27%), Gaps = 42/303 (13%)

Query: 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEH---IQAFPGHRGPVSCLTF-RQGTSELF 278
           I  + +      L     D  + ++   IQ     +     ++ P+ C  F      +++
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 279 SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVG----------RDRSMQ 328
            G+    +   +         L  +++ +      +      +             R+  
Sbjct: 74  VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133

Query: 329 LWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPL- 387
              +  ++         +       ++   + G ++  ++ + L   +          L 
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193

Query: 388 --------------------LDG---LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW 424
                               +DG   ++ F+      ++        +  +   ++    
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253

Query: 425 VSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIA 484
           V+S+          +   +G +  W +++  K    + N       + +  A S   L  
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK----IKNFAKFNEDSVVKIACSDNILCL 309

Query: 485 GVG 487
              
Sbjct: 310 ATS 312

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 255 IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL---FGHQSEVLTID 311
           +Q     +  +S +      S L   S+D ++ ++  + +A    L     ++  +L  +
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 13/172 (7%), Positives = 40/172 (23%), Gaps = 30/172 (17%)

Query: 180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG 239
           +  +  + +   +                       +  + +      +  +    A   
Sbjct: 169 NSQVQWFRLPLCEDDNGTIE---------------ESGLKYQIRDVALLPKEQEGYACSS 213

Query: 240 LDRHIHLWD---------------TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR 284
           +D  + +                  R             PV+ + F      L++   D 
Sbjct: 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG 273

Query: 285 TVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES 336
            +  WN + R  I        + +         +     D + +     +++
Sbjct: 274 IISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 10/98 (10%), Positives = 31/98 (31%), Gaps = 16/98 (16%)

Query: 400 KISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQ 459
           +I     +                ++S + +     L    + +GS+ ++  + + K++ 
Sbjct: 5   QIEQAPKD----------------YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD 48

Query: 460 PLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH 497
            L +L     +    F  +    I     +  + +   
Sbjct: 49  LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 23/100 (23%)

Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
               V ++  S      ++A  DG I  W++ + K +K                      
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK-------NFAKFNE-------- 294

Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLW---DTRIQEH 254
                   + ++     L     D         D  I+ +
Sbjct: 295 -----DSVVKIACSDNILCLATSDDTFKTNAAIDQTIELN 329

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 5e-14
 Identities = 42/374 (11%), Positives = 98/374 (26%), Gaps = 79/374 (21%)

Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
           H   + +V+    +S   S S DG +  WD           P ++       K       
Sbjct: 13  HDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDN---ENPKDKSYSHFVHK---SGLH 64

Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT--- 274
                      + +   +A+      +  +    ++  +     +  +     ++ +   
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 275 ------------SELFSGSFDRTVKIWNA------------------EDRAYISTLFGHQ 304
                         L +     T  IW                    E +  + +     
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 305 SEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLS---- 360
               ++D   +  + T   + ++Q+ ++     L       S+            S    
Sbjct: 185 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 361 ----GSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSY 416
                 D  S                           +E + G+     S   + +  S 
Sbjct: 245 LLAIAHDSNSFGCI---------------------TLYETEFGERIGSLSVPTHSSQASL 283

Query: 417 HSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL-----PLVGFVN 471
              +  SWV S++     +   S   +G +R W ++++    + +  L      +    +
Sbjct: 284 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK----ERITTLNMHCDDIEIEED 339

Query: 472 SLAFAKSGQFLIAG 485
            LA  + G  L   
Sbjct: 340 ILAVDEHGDSLAEP 353

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 37/338 (10%), Positives = 86/338 (25%), Gaps = 59/338 (17%)

Query: 158 HRQSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRA 216
           H   + A+     +     + S  G +L + ++     K +   +  L     K     A
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDT------------------RIQEHIQAF 258
            K                L +  +    ++W                     +Q  +++ 
Sbjct: 125 LKWGAS----NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 259 PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR---- 314
                  + +   +    + +G  + TV+I        +       S +   + +R    
Sbjct: 181 MTPSQFATSVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239

Query: 315 ---KERVLTVGRDRSMQLWK------------------VPEESRLVFRAPASSLECCCFI 353
                 +       S                         + S   F   +  +      
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299

Query: 354 SNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNL-- 411
           S +   S   DG +  W +  K+ +         L+   +  + E        E+G+   
Sbjct: 300 SGETLCSAGWDGKLRFWDVKTKERITT-------LNMHCDDIEIEE-DILAVDEHGDSLA 351

Query: 412 NPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW 449
            PG +          S      ++       + S+R +
Sbjct: 352 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 33/238 (13%), Positives = 69/238 (28%), Gaps = 46/238 (19%)

Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
              +   Q  T+V +S +     +   +G++   ++S+ + +        ++ +      
Sbjct: 178 ESPMTPSQFATSVDIS-ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN---- 232

Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHL---WDTRIQEHI-------------Q 256
                     I ++  S  G  LA             ++T   E I              
Sbjct: 233 ---------SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 283

Query: 257 AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--- 313
               H   V  L+F      L S  +D  ++ W+ + +  I+TL  H  ++   + +   
Sbjct: 284 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAV 343

Query: 314 -RKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELW 370
                 L       ++  K    S                  N+       D SI  +
Sbjct: 344 DEHGDSLAEPGVFDVKFLKKGWRS------------GMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 26/245 (10%), Positives = 57/245 (23%), Gaps = 39/245 (15%)

Query: 255 IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR 314
             A   H   +  ++         S S D  +K+W+ +                 +D   
Sbjct: 7   ANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNK----------------LLDNEN 48

Query: 315 KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFL--SGSDDGSIELWSL 372
            +            L  V              L+     + +  L  + S  G +  + +
Sbjct: 49  PKDKSYSHFVHKSGLHHV------------DVLQAIERDAFELCLVATTSFSGDLLFYRI 96

Query: 373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG 432
            R+     V      L      +     +  G S +        H   A     +  +  
Sbjct: 97  TREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL----LSHRLVATDVKGTTYIW- 151

Query: 433 GSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRL 492
                     + S+ L    +          +    F  S+  ++ G           ++
Sbjct: 152 --KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQI 209

Query: 493 GRWGH 497
                
Sbjct: 210 SELST 214

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.3 bits (170), Expect = 1e-13
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTV 286
            +  +  Y+ +G  D+ I ++D+  ++ +    GH G V  L +  G   L SGS DRTV
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTV 76

Query: 287 KIWNAEDRAYISTLFGHQSE---VLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAP 343
           ++W+ +         GH S    +  ++    + ++T  RD ++ +WK+P+ES +     
Sbjct: 77  RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE 136

Query: 344 ASSLECCCF 352
                    
Sbjct: 137 EHDYPLVFH 145

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.3 bits (144), Expect = 2e-10
 Identities = 45/360 (12%), Positives = 98/360 (27%), Gaps = 50/360 (13%)

Query: 154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQ 213
            L  H  SV    L  +D+   + + D  I  +D  + K +         L  H      
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLL-------QLSGH------ 52

Query: 214 GRATKQSKHILALAVSSDGRYL-ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                    + AL  +  G  +  S      +         H+            +   +
Sbjct: 53  ------DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 106

Query: 273 GTSELFSGSFDRTVKIWNAEDRA-----------------------YISTLFGHQSEVLT 309
               + +GS D T+ +W     +                       ++  L GH + V T
Sbjct: 107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 166

Query: 310 IDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFL--SGSDDGSI 367
           +       V     +  +       +   +       +    +    +    +  D    
Sbjct: 167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 226

Query: 368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSS 427
                  +    +  +   +     + +      ++G     + N  S   S  ++ +S+
Sbjct: 227 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA 286

Query: 428 VTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVG 487
           +T    SD            ++ + S       +  L     + S+ F   G+ L+A V 
Sbjct: 287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI--LKDADQIWSVNF--KGKTLVAAVE 342

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 1e-07
 Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI-STLF 301
              +      ++ + F  H   +S +T    +  +     +    I+N      + + + 
Sbjct: 262 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL 321

Query: 302 GHQSEVLTIDCLRKERVLTVGRDRSMQLW 330
               ++ +++   K  V  V +D    L 
Sbjct: 322 KDADQIWSVNFKGKTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 10/91 (10%), Positives = 25/91 (27%), Gaps = 19/91 (20%)

Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
           H  +++A+           +  +     +++ SGK V         +             
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH------ANILKD---------- 323

Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWD 248
             +  I ++        +A+   D    L  
Sbjct: 324 --ADQIWSVNFKGK-TLVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 7e-05
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 298 STLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISND 356
           +TL GH + V+T        V+T   D+ ++++    +  L         +    +    
Sbjct: 6   TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 357 EFLSGSD 363
             +SGS 
Sbjct: 66  ILVSGST 72

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 17/131 (12%), Positives = 43/131 (32%), Gaps = 8/131 (6%)

Query: 332 VPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVK------NAH 385
           VP+  R   R   +S+  C    ++  ++G+DD  I ++  + KK +  +        A 
Sbjct: 2   VPQ--RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL 59

Query: 386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS 445
               G         +               +   ++      +          +G+ + +
Sbjct: 60  KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119

Query: 446 VRLWAIESETK 456
           + +W +  E+ 
Sbjct: 120 LHVWKLPKESS 130

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 66.5 bits (160), Expect = 1e-12
 Identities = 26/284 (9%), Positives = 66/284 (23%), Gaps = 23/284 (8%)

Query: 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS 281
             + L  +  G  +        ++          + +  H    +            SG 
Sbjct: 19  TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 282 FDRTVKIWNAEDRAYISTLF--GHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLV 339
               V+IW+     +I           V  I    + + +    +   +   V       
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137

Query: 340 FRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEG 399
                +         + +        S    + +        K      +  K       
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197

Query: 400 KISNGH------------------SENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA 441
                                   ++ G     S  + +    V  +T        AS +
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257

Query: 442 GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG 485
            + ++++W +   T  ++    +        L    + Q L++ 
Sbjct: 258 ADKTIKIWNV--ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 299

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.6 bits (150), Expect = 2e-11
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGH-RGPVSCLTFRQGTSELFSGSFDRTVKIW 289
           DG  +AS   D+ I +W+    +  +  P   R     L        L S S +  +   
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

Query: 290 NAE 292
           N E
Sbjct: 309 NPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 27/301 (8%), Positives = 65/301 (21%), Gaps = 42/301 (13%)

Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
            +  +H    T    S       S    G++  WD +    +                  
Sbjct: 52  EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-----PVFSGPVK 106

Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                 +SK I A+    +             +   T     + +          +    
Sbjct: 107 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 166

Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKV 332
             + +               +         +  +         +  + +          V
Sbjct: 167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 226

Query: 333 PEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGL 391
            E+  L   A + S+    +  +   + S S D +I++W++   K    +     +    
Sbjct: 227 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI---- 282

Query: 392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451
                                               + +        S + NG +     
Sbjct: 283 --------------------------------EDQQLGIIWTKQALVSISANGFINFVNP 310

Query: 452 E 452
           E
Sbjct: 311 E 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 7/78 (8%), Positives = 18/78 (23%), Gaps = 3/78 (3%)

Query: 255 IQAFPGH-RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID-C 312
             + P   RG    L       ++   +   +V                H  +       
Sbjct: 9   FPSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67

Query: 313 LRKERVLTVGRDRSMQLW 330
                  +     ++++W
Sbjct: 68  PSGYYCASGDVHGNVRIW 85

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.6 bits (155), Expect = 4e-12
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 10/134 (7%)

Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
            R   + +++S  ++   +    G IL +D+ S +     W                  +
Sbjct: 161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW--------AFRTSKINAIS 212

Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI-QEHIQAFPGHRGPVSCLTFRQGTSE 276
            +     A     +   +A+G LD +I ++  +   + I+A   H+  V+ L +    S 
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-ST 271

Query: 277 LFSGSFDRTVKIWN 290
           L S   D  +K WN
Sbjct: 272 LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.9 bits (135), Expect = 1e-09
 Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 1/92 (1%)

Query: 242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED-RAYISTL 300
                        I A                   + +GS D  + I++ +     I  L
Sbjct: 195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 254

Query: 301 FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKV 332
             H+  V  +       +++ G D  ++ W V
Sbjct: 255 NAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (131), Expect = 5e-09
 Identities = 15/79 (18%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 252 QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID 311
            E ++   GH   ++ LT     + L SGS+D  +  W++      S    H + ++++D
Sbjct: 3   DEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSS-----SMHQDHSNLIVSLD 53

Query: 312 CLRKERVLTVGRDRSMQLW 330
             + +   ++  D ++++ 
Sbjct: 54  NSKAQEYSSISWDDTLKVN 72

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 1e-08
 Identities = 33/275 (12%), Positives = 69/275 (25%), Gaps = 20/275 (7%)

Query: 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFS 279
           +K I AL V+     L SG  D  I  W +           H   +  L   +       
Sbjct: 13  NKGITALTVNP----LISGSYDGRIMEWSSS-----SMHQDHSNLIVSLDNSKAQEYSSI 63

Query: 280 GSFDRTVKIWNAEDRAYIST---LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES 336
              D        +             +      +       +L       ++  ++    
Sbjct: 64  SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG 123

Query: 337 RLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNA------HPLLDG 390
             V  +           +  +    SD           +     +  +            
Sbjct: 124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM 183

Query: 391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450
            K    D        S            S   +   +       DL A+G+ + ++ +++
Sbjct: 184 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 243

Query: 451 IESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG 485
           ++   K I+ L        VN+L +      + +G
Sbjct: 244 VKRPMKIIKALNAHK--DGVNNLLWETPSTLVSSG 276

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 2e-08
 Identities = 48/321 (14%), Positives = 91/321 (28%), Gaps = 63/321 (19%)

Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK-----GVKYLWPSEEVLKSH 207
           + +  H + +TA+ ++       S S DG I+ W  SS        +  L  S+    S 
Sbjct: 7   KTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSS 62

Query: 208 G-----AKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
                  K       +        + ++DG        D  + L                
Sbjct: 63  ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP 122

Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID----------- 311
           G    L+       L  G+  +  K+ + E    + T    +   ++I            
Sbjct: 123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 182

Query: 312 -CLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELW 370
                   L     ++ +      +   +   PA        I  D   +GS D +I ++
Sbjct: 183 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 242

Query: 371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV 430
           S+ R   +    NAH                                       V+++  
Sbjct: 243 SVKRPMKIIKALNAHK------------------------------------DGVNNLLW 266

Query: 431 CGGSDLAASGAGNGSVRLWAI 451
              S L +SGA +  ++ W +
Sbjct: 267 ETPSTLVSSGA-DACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDV 188
            + L  H+  V  +      S   S+  D  I  W+V
Sbjct: 251 IKALNAHKDGVNNLLWE-TPSTLVSSGADACIKRWNV 286

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 6/185 (3%)

Query: 133 GRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK 192
           G + +V       PE T       +    +   A S+   +    +  G I   D+SSG 
Sbjct: 168 GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD 227

Query: 193 ---GVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT 249
                     +E             +            +             R + + D 
Sbjct: 228 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 287

Query: 250 RIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTL--FGHQSE 306
           +  E +  F       S    +     L+   + D+T+ I +AE    + ++   GH  +
Sbjct: 288 KTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 347

Query: 307 VLTID 311
           V+T  
Sbjct: 348 VITTA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 8e-08
 Identities = 37/352 (10%), Positives = 79/352 (22%), Gaps = 58/352 (16%)

Query: 162 VTAVALSEDDSKGF-----SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRA 216
               A + D  + +       +        D  +G+          +    G   P    
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR---------VIGMIDGGFLP---- 50

Query: 217 TKQSKHILALAVSSDGRYLA----------SGGLDRHIHLWDTRIQEHIQAFPGHRGPVS 266
                      V+ DG ++A           G    ++ ++D               P  
Sbjct: 51  --------NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102

Query: 267 ---------CLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER 317
                     LT    T   +  S    V + + E +A+   L         I     + 
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH--IFPTAPDT 160

Query: 318 VLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKP 377
                RD S+       E                    +        G +   +   K  
Sbjct: 161 FFMHCRDGSLAKVAFGTEGTPEITHTE-VFHPEDEFLINHPAYSQKAGRLVWPTYTGK-- 217

Query: 378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA 437
              +          K     E       ++          +         + V    +  
Sbjct: 218 ---IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 274

Query: 438 ASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQE 489
              A    V +     + K  + L    +   ++S+  ++  + L+  +   
Sbjct: 275 HKTASR-FVVVL----DAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (122), Expect = 9e-08
 Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 3/119 (2%)

Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
             ++  A        +  +  +    ++  V      ++   S  V+        +    
Sbjct: 237 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF 296

Query: 218 KQSKHILALAVSSDGRYL--ASGGLDRHIHLWDTRIQEHIQAFPGH-RGPVSCLTFRQG 273
           +    I ++ VS D + L  A    D+ +++ D    E +++      GP    T   G
Sbjct: 297 EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.5 bits (147), Expect = 5e-11
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVK 287
           D +  A+ G D  I +WD    + +Q +   +  +          G   + S S D T+ 
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 288 IWN 290
            + 
Sbjct: 322 FYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 35/328 (10%), Positives = 76/328 (23%), Gaps = 37/328 (11%)

Query: 200 SEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG-GLDRHIHLWD--TRIQEHIQ 256
           S   LK      P      Q      L+       +A   G    +   D        + 
Sbjct: 1   SSISLKEIIPPQPST----QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVV 56

Query: 257 AFPGHRG-PVSCLTFRQGTSE--LFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL 313
            F GH    V+ + F        L SG     V +W        +++  +      +   
Sbjct: 57  QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 116

Query: 314 RKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLL 373
               +      R + +     ++  VF +  S         + + ++            +
Sbjct: 117 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM 176

Query: 374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS--------------------------E 407
                  V             ++   K  +                             +
Sbjct: 177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236

Query: 408 NGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLV 467
           +G                        S   A+   + ++R+W + +  K +Q        
Sbjct: 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQ 295

Query: 468 GFVNSLAFAKSGQFLIAGVGQEPRLGRW 495
                +    +G   I  +  +  L  +
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 6e-08
 Identities = 32/307 (10%), Positives = 71/307 (23%), Gaps = 60/307 (19%)

Query: 158 HRQSVTAVALSEDDSKGF--SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGR 215
               VT V  S      +  S  + G ++ W  +  K    +             + +  
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV-----------NVKSE 110

Query: 216 ATKQSKHILALAVSSDGRYLASGGL--DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG 273
               +  I  ++   +GR L   G   D             +    GH   ++    +Q 
Sbjct: 111 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS 170

Query: 274 TSELFSGSFDRTVK----IWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQL 329
                    D            +  A   T     S V  ++         +      ++
Sbjct: 171 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 230

Query: 330 WK-------VPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVK 382
                      +            +    ++ + +F +   D +I +W +   K V    
Sbjct: 231 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290

Query: 383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG 442
                                                   +    V   G   +  S + 
Sbjct: 291 ---------------------------------LDKQQLGNQQVGVVATGNGRI-ISLSL 316

Query: 443 NGSVRLW 449
           +G++  +
Sbjct: 317 DGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 5e-07
 Identities = 6/94 (6%), Positives = 29/94 (30%), Gaps = 4/94 (4%)

Query: 243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
                     ++I+                 + +  +   D T+++W+      +     
Sbjct: 232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL 291

Query: 303 HQSEVLTIDC----LRKERVLTVGRDRSMQLWKV 332
            + ++             R++++  D ++  +++
Sbjct: 292 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 16/79 (20%)

Query: 170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229
           D  K  +   D +I  WDV++ K V+              +             + +  +
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQ-------KWTLDKQQL--------GNQQVGVVAT 306

Query: 230 SDGRYLASGGLDRHIHLWD 248
            +G  + S  LD  ++ ++
Sbjct: 307 GNG-RIISLSLDGTLNFYE 324

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 61.3 bits (147), Expect = 7e-11
 Identities = 28/340 (8%), Positives = 65/340 (19%), Gaps = 51/340 (15%)

Query: 165 VALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL 224
            AL          +   ++   DV+S    K                P            
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYK-------SCVMPDKFGPGT---------- 44

Query: 225 ALAVSSDGRYL-ASGGLDRHIHLWDTRIQEHIQAFP------GHRGPVSCLTFRQGTSEL 277
              ++ D R           I+  D    ++                +          E+
Sbjct: 45  -AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV 103

Query: 278 FSGSFDRT------------VKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDR 325
           ++                  +++++  D      +               +         
Sbjct: 104 YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP 163

Query: 326 SMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAH 385
            +    V      V     +         +  +         E           I +   
Sbjct: 164 DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS-----MLYTIARFKD 218

Query: 386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS 445
              D             +  +   +    +  +        +            G  N  
Sbjct: 219 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLT----ELYFTGLRSPKDPNQIYGVLN-R 273

Query: 446 VRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG 485
           +  +    + K  + +    L      +AF K G  L  G
Sbjct: 274 LAKY----DLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG 309

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 18/144 (12%), Positives = 43/144 (29%), Gaps = 20/144 (13%)

Query: 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRA 216
           +     T     +D     +A      L  D+ +GK     +                  
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF------------------ 247

Query: 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE 276
              ++       S        G L+  +  +D + ++ I+A         C+ F +   +
Sbjct: 248 ADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDK 305

Query: 277 LFSGSFDRTVKIWNAEDRAYISTL 300
           L+ G     + ++N +    +  +
Sbjct: 306 LYLGGTFNDLAVFNPDTLEKVKNI 329

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 23/273 (8%), Positives = 72/273 (26%), Gaps = 29/273 (10%)

Query: 130 EESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVS 189
              G +  +     +     +   V  +  +S+ + A+S D  + ++       L+    
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

Query: 190 SGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT 249
                  ++ + + L++        R     + +  +  + DG    +G     + +   
Sbjct: 119 VKPPRLEVFSTADGLEAK-----PVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTG 173

Query: 250 RIQEHIQAFPGHRG----------------------PVSCLTFRQGTSELFSGSFDRTVK 287
           +    +     +R                         +   F+    +  +        
Sbjct: 174 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 233

Query: 288 IWNAEDRAYISTLFG-HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASS 346
             + +     +  F        T     K+     G    +  + + +   +       +
Sbjct: 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHT 293

Query: 347 LECCCFISNDEFL-SGSDDGSIELWSLLRKKPV 378
             C  F    + L  G     + +++    + V
Sbjct: 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 15/127 (11%), Positives = 31/127 (24%), Gaps = 26/127 (20%)

Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
           +      +       S  D           +  +D+   K +K                 
Sbjct: 245 QEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAA--------------- 288

Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
                        +A    G  L  GG    + +++    E ++      G +S      
Sbjct: 289 -----NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMST----- 338

Query: 273 GTSELFS 279
            T ++F 
Sbjct: 339 TTPQVFI 345

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 20/281 (7%), Positives = 56/281 (19%), Gaps = 20/281 (7%)

Query: 226 LAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF--PGHRGPVSCLTFRQGTSELFSGSFD 283
            A+ +   Y+       ++H+ D       ++   P   GP + +      +     +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 284 RTVKIWNAEDR------AYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESR 337
             +   + +           S        + +       + +    + + +L        
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV--- 118

Query: 338 LVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDG-----LK 392
            V             +      +      + L        +Y+       +D        
Sbjct: 119 -VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTV 177

Query: 393 NFEQDEGKISNGHSENGN-LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451
                        + +     P            +           A+           +
Sbjct: 178 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237

Query: 452 ESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRL 492
             +T          L     +   +      I GV      
Sbjct: 238 --KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAK 276

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 5/48 (10%), Positives = 14/48 (29%)

Query: 148 ATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVK 195
              +         +   VA  +   K +       +  ++  + + VK
Sbjct: 280 KQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 32/359 (8%), Positives = 79/359 (22%), Gaps = 64/359 (17%)

Query: 161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQS 220
           S  A   S  D    +    G     DVS                             + 
Sbjct: 4   SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT---------------------YVLKVPEP 42

Query: 221 KHILALAVSSDGRYLASGGLD--RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF 278
             I  +    D +     G      + ++D R  +  + F  + G V  +   +      
Sbjct: 43  LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAV 101

Query: 279 SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL-----------RKERVLTVGRDRSM 327
             +    +   + E           ++ +                  K         +++
Sbjct: 102 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161

Query: 328 QLWKVPEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSIELWSLLRKK---------- 376
            ++ +            S      F ++ + L   S          +             
Sbjct: 162 HVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 221

Query: 377 ----------PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS 426
                     P  +V  +     G  +      + S  + + G+        SS     S
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL-IYS 280

Query: 427 SVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG 485
                  +         G +  + +++            +   +  L  +   + ++  
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-------EVKNNLTDLRLSADRKTVMVR 332

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 9/149 (6%), Positives = 24/149 (16%), Gaps = 6/149 (4%)

Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
                +       + L                          +        V    G   
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--DPGDYR 267

Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
                                 Y         +  +D + ++        +  ++ L   
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLS 323

Query: 272 QGTSELFSGSFDRTVKIWNAEDRAYISTL 300
                +     D  +  +  E      T+
Sbjct: 324 ADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 23/325 (7%), Positives = 71/325 (21%), Gaps = 29/325 (8%)

Query: 148 ATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDG--SILHWDVSSGKGVKYLWPSEEVLK 205
            +  + + +     +  V    D    F         +  +D  +GK  K+      V  
Sbjct: 31  VSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFA 90

Query: 206 SHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPV 265
               ++ +       +             +          + +   +  I  F       
Sbjct: 91  MGVDRNGKFAVVANDRF----------EIMTVDLETGKPTVIERSREAMITDFTISDNSR 140

Query: 266 SCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDR 325
                         G   + + +++ E R   +    +  +         + +  +    
Sbjct: 141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 200

Query: 326 SMQLWKV--------PEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKP 377
                                V      S      +         +    +++       
Sbjct: 201 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN 260

Query: 378 V----YIVKNAHPLLDGLKNFEQD--EGKISNGHSENGNL---NPGSYHSSSAYSWVSSV 428
           V    Y +         + +            G  E G L   +  +   +   + ++ +
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320

Query: 429 TVCGGSDLAASGAGNGSVRLWAIES 453
            +            +G +  + +E 
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 8/46 (17%), Positives = 19/46 (41%)

Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLW 198
           R + + + ++T + LS D         DG I  + +   +  + + 
Sbjct: 308 RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 26/317 (8%), Positives = 69/317 (21%), Gaps = 32/317 (10%)

Query: 176 SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235
           + ++   ++  D       K +                          +   V+  GR  
Sbjct: 6   APARPDKLVVIDTEKMAVDKVI-----------------TIADAGPTPMVPMVAPGGRIA 48

Query: 236 -ASGGLDRHIHLWDTRIQEHIQAFPGHRGP-----VSCLTFRQGTSELFSGSFDRTVKIW 289
            A+      +   D    E +              +           L        +++ 
Sbjct: 49  YATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT 108

Query: 290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLEC 349
           + E +     L+  ++           ++  +   R             V    A +L  
Sbjct: 109 HFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVE 168

Query: 350 CCFI-SNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSEN 408
              I S +       D             +              +       +     E 
Sbjct: 169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228

Query: 409 GNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG 468
           G +          + + ++V          +      +  +    + +    +  +PL  
Sbjct: 229 GEMAMREVRIMDVFYFSTAVNPAKT----RAFGAYNVLESF----DLEKNASIKRVPLPH 280

Query: 469 FVNSLAFAKSGQFLIAG 485
              S+  +  G  +  G
Sbjct: 281 SYYSVNVSTDGSTVWLG 297

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 32/287 (11%), Positives = 69/287 (24%), Gaps = 33/287 (11%)

Query: 137 RVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKY 196
             I     +     +     +  +S+   ALS D            +             
Sbjct: 59  VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 197 LWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ---- 252
           L+              + +A +  + I  LA + DG  L   G D H+   +        
Sbjct: 119 LY--------DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDK 170

Query: 253 -----------------EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA 295
                               Q            T R+        ++   +   + E   
Sbjct: 171 PIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230

Query: 296 YISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISN 355
                            +   +    G    ++ + + + + +       S       ++
Sbjct: 231 MAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTD 290

Query: 356 DEFL-SGSDDGSIELWSLLRKKPVYIVK---NAHPLLDGLKNFEQDE 398
              +  G   G +  +     +    V    NA   L  ++ F +DE
Sbjct: 291 GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRDE 337

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 5/75 (6%), Positives = 19/75 (25%), Gaps = 3/75 (4%)

Query: 233 RYLASGGLDRHIHLWDTRIQEHIQAFPGH---RGPVSCLTFRQGTSELFSGSFDRTVKIW 289
            Y+ +      + + DT      +          P+  +    G     + +   ++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 290 NAEDRAYISTLFGHQ 304
           +      +  +    
Sbjct: 62  DLVTGETLGRIDLST 76

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 36/326 (11%), Positives = 74/326 (22%), Gaps = 40/326 (12%)

Query: 149 TDEFRVL--LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKS 206
              + +   L    +V    LS      F   +DG +   D+   +          V + 
Sbjct: 49  GSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-------TTVAEI 101

Query: 207 HGAKDPQGRATKQSKHILALAVSSDGRYL-ASGGLDRHIHLWDTRIQEHIQAFPGHRGPV 265
               + +   T       +     + +Y  A         + D    E  +         
Sbjct: 102 KIGSEARSIET-------SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 154

Query: 266 SCLTF------------RQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL 313
               +                  + +      + + +  D   + T        L    L
Sbjct: 155 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL 214

Query: 314 --RKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLEC--CCFISNDEFLSGSDDGSIEL 369
                  +T    R+  +    +E +LV                +      G    +  +
Sbjct: 215 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHM 274

Query: 370 W----SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV 425
                +L+   P     NA  +LD         G +      N          +      
Sbjct: 275 GDDSVALIGTDPEGHPDNAWKILDSFPA--LGGGSLFIKTHPNSQYLYVDATLNPEAEIS 332

Query: 426 SSVTVCGGSDLAASGAGNGSVRLWAI 451
            SV V     +      +   +   I
Sbjct: 333 GSVAVFDIKAM-TGDGSDPEFKTLPI 357

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 35/193 (18%), Positives = 54/193 (27%), Gaps = 28/193 (14%)

Query: 146 PEATDEFRVLLKHRQSVTAVALSEDDSKGF--SASKDGSILHWDVSSGKGVKYLWPSEEV 203
           PE  + ++VL+K            D    F  +    G I   D  S K VK       V
Sbjct: 5   PEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVK-------V 57

Query: 204 LKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT-----RIQEHIQAF 258
           + +  A                  +S+ GRYL   G D  I + D           I+  
Sbjct: 58  IDTGYA--VHI-----------SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104

Query: 259 PGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER 317
              R   S            +G+ +     I + E       +      V T     + R
Sbjct: 105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 164

Query: 318 VLTVGRDRSMQLW 330
           V  +        +
Sbjct: 165 VAAIIASHEHPEF 177

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 26/207 (12%), Positives = 60/207 (28%), Gaps = 24/207 (11%)

Query: 129 LEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDV 188
           L ++G++  ++    +K          +    +V    +S          +D  I   D+
Sbjct: 38  LRDAGQIA-LVDGDSKKIVKV------IDTGYAVHISRMSASGRYLLVIGRDARIDMIDL 90

Query: 189 SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG-LDRHIHLW 247
            + +         +V +     + +   + +           + RY  +G        + 
Sbjct: 91  WAKEP-------TKVAEIKIGIEARSVESSK-------FKGYEDRYTIAGAYWPPQFAIM 136

Query: 248 DTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSE 306
           D    E  Q        V   T+           S +    I N ++   +  +     +
Sbjct: 137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 196

Query: 307 VLTIDCLRKERVLT-VGRDRSMQLWKV 332
            LT+  +     L   G D S + +  
Sbjct: 197 NLTVTSIGAAPFLADGGWDSSHRYFMT 223

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 30/291 (10%), Positives = 72/291 (24%), Gaps = 31/291 (10%)

Query: 176 SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235
           + S+  +I   DV+S K    +             +P G             +S DG  +
Sbjct: 7   ANSESDNISVIDVTSNKVTATI---------PVGSNPMG-----------AVISPDGTKV 46

Query: 236 -ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294
             +      + + DT     I   P    P        G     +     T+ + +    
Sbjct: 47  YVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN 106

Query: 295 AYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFIS 354
               T+   +S +        +++                   ++             ++
Sbjct: 107 TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT 166

Query: 355 NDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPG 414
            D       +      S++      ++                EG  +   + +   N  
Sbjct: 167 PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTV 226

Query: 415 SYHSSSAYSWVSSVTVCG----------GSDLAASGAGNGSVRLWAIESET 455
           S   +      + + V            G  +  + +   +V +    + T
Sbjct: 227 SMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 221 KHILALAVSSDGRYL-ASGGLDRHIHLWDTRIQEHIQAFPGHRGP 264
                +AV+ DG+ +  +      + + DT            + P
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTL 300
            + + DT   +     P    P + +       +++ + SF  TV + +       +T+
Sbjct: 225 TVSMIDTGTNKITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 16/287 (5%), Positives = 55/287 (19%), Gaps = 34/287 (11%)

Query: 215 RATKQSKHILALAVSSDGRYLA----------SGGLDRHIHLWDTRIQEHIQAFPGHRGP 264
                   +        G   A           G    ++ ++D      I        P
Sbjct: 59  LGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP 118

Query: 265 VSC-------LTFRQGTSELFSGSF-DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE 316
                     +     ++ L    F        +    +            +        
Sbjct: 119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPG--AAA 176

Query: 317 RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKK 376
                    S+    +           A         +     + ++   + +W++    
Sbjct: 177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTG---AQNCSSQAAQANYPGMLVWAVASS- 232

Query: 377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDL 436
            +                + +E      +  +      +   ++    +           
Sbjct: 233 -ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL----TVEHSR 287

Query: 437 AASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLI 483
           +   A        ++ +     Q    +      +++  A+ G    
Sbjct: 288 SCLAAAE---NTSSVTASVG--QTSGPISNGHDSDAIIAAQDGASDN 329

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 10/109 (9%), Positives = 26/109 (23%), Gaps = 3/109 (2%)

Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
           +     A        +  +  K+   +               +E       +        
Sbjct: 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA-AAENTSSVTASVGQTSGPI 310

Query: 218 KQSKHILALAVSSDGRYL--ASGGLDRHIHLWDTRIQEHIQAFPGHRGP 264
                  A+  + DG     A+      + ++D    +   +    +GP
Sbjct: 311 SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 23/315 (7%), Positives = 73/315 (23%), Gaps = 35/315 (11%)

Query: 176 SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235
           ++ +   I  W+++    +                    +       +  + VS D RYL
Sbjct: 9   ASPESQQIHVWNLNHEGALTLT-----------------QVVDVPGQVQPMVVSPDKRYL 51

Query: 236 -ASGGLDRHIHLWD----TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290
                 +  +  +                        ++       +F GS++       
Sbjct: 52  YVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH-ISTDHQGQFVFVGSYNAGNVSVT 110

Query: 291 AEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECC 350
             +      +      +                  +++  ++      +F          
Sbjct: 111 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC-----LFTVSDDGHLVA 165

Query: 351 CFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN 410
              +    + G+    +      +        N+   +  LK+   +   +        N
Sbjct: 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 225

Query: 411 LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFV 470
            +   + +    +                      + ++++  +   +      P     
Sbjct: 226 FSDTRWAADIHITPDGRHLYACDRT-------ASLITVFSVSEDGSVLSKEGFQPTETQP 278

Query: 471 NSLAFAKSGQFLIAG 485
                  SG++LIA 
Sbjct: 279 RGFNVDHSGKYLIAA 293

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 1/68 (1%)

Query: 225 ALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR 284
             A    G +   G   +   +      E  +  P  + P    T   G   + +G    
Sbjct: 222 IAAAVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSP 280

Query: 285 TVKIWNAE 292
           TV +   +
Sbjct: 281 TVSVIAID 288

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 24/254 (9%), Positives = 63/254 (24%), Gaps = 24/254 (9%)

Query: 226 LAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRT 285
           LA + DG    +      I         + Q      G VS L F      + +G    +
Sbjct: 33  LASAPDGTIFVTNHEVGEIVSITP--DGNQQIHATVEGKVSGLAFTSNGDLVATGWNADS 90

Query: 286 VKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPAS 345
           + + +               + + ++ +              Q          ++     
Sbjct: 91  IPVVSLVKSDGTVETLLTLPDAIFLNGIT--------PLSDTQYLTADSYRGAIWLIDVV 142

Query: 346 SLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH 405
                 ++ +      + +                        + L     ++  +    
Sbjct: 143 QPSGSIWLEHPMLARSNSES-----------VFPAANGLKRFGNFLYVSNTEKMLLLRIP 191

Query: 406 SENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP 465
            ++ +            +         G+   A+   N  VR+   +  T  I       
Sbjct: 192 VDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAP-DRSTTIIAQA-EQG 249

Query: 466 LVGFVNSLAFAKSG 479
           ++G   ++AF ++ 
Sbjct: 250 VIG-STAVAFGQTE 262

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	513
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.98
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.61
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.47
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.36
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.34
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.27
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.27
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.26
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.23
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.23
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.22
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.21
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.19
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.18
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.08
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.06
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.04
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.89
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.79
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.74
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.71
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.57
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.53
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.22
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.06
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.94
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.88
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.83
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.8
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.76
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.72
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.72
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.68
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.59
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.54
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.47
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.43
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.41
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.41
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.33
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.27
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.23
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.15
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.7
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.7
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.25
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.57
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.28
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.19
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.02
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.13
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.21
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.6
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	92.05
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.09
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.26
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	84.14
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	82.23

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-44  Score=338.14  Aligned_cols=290  Identities=16%  Similarity=0.271  Sum_probs=249.7

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      +.++.+ .|...|+||+|+|+|++|+||+ ||.|+|||+.+......+              .......|...|.+++|+
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~--------------~~~~~~~h~~~I~~v~~s  106 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV--------------SQLDCLNRDNYIRSCKLL  106 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS--------------EEEECSCTTSBEEEEEEC
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccccee--------------EEeeecCCCCcEEEEEEc
Confidence            334444 7999999999999999999998 899999999876543321              001235788999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCc--ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQ--EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV  307 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  307 (513)
                      |++++|++|+.||.|++||+...  +....+..|...+.+++|+|++.++++++.++.|++|++.++++......|...|
T Consensus       107 ~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v  186 (337)
T d1gxra_         107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA  186 (337)
T ss_dssp             TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999998744  5567778899999999999999999999999999999999999998889999999


Q ss_pred             EEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296          308 LTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       308 ~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      .+++|++++ .+++++.++.|++||++++..+....+...|.+++|+|++. +++++.++.|++||+.+++....     
T Consensus       187 ~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----  261 (337)
T d1gxra_         187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-----  261 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-----
T ss_pred             ccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccc-----
Confidence            999999987 55688899999999999999887778889999999999985 77999999999999998876543     


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP  465 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~  465 (513)
                                                       ..|...|++++|+|++++|++|+.||.|++||+.++ ..   +....
T Consensus       262 ---------------------------------~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~-~~---~~~~~  304 (337)
T d1gxra_         262 ---------------------------------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-AS---IFQSK  304 (337)
T ss_dssp             ---------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CE---EEEEE
T ss_pred             ---------------------------------cccccccceEEECCCCCEEEEEeCCCeEEEEECCCC-CE---EEEcc
Confidence                                             223344999999999999999999999999999987 22   23344


Q ss_pred             cccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          466 LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       466 ~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      |.+.|++++|+|++++|+++ +.||+|+||++.
T Consensus       305 ~~~~v~~~~~s~d~~~l~t~-s~D~~I~vWdl~  336 (337)
T d1gxra_         305 ESSSVLSCDISVDDKYIVTG-SGDKKATVYEVI  336 (337)
T ss_dssp             CSSCEEEEEECTTSCEEEEE-ETTSCEEEEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEE-eCCCeEEEEEEE
Confidence            78899999999999999998 899999999863

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.4e-43  Score=322.26  Aligned_cols=292  Identities=25%  Similarity=0.430  Sum_probs=258.9

Q ss_pred             cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296          144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI  223 (513)
Q Consensus       144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (513)
                      |.|.+ .....|.||+++|++|+|+|++++|+||+.||+|+|||+.+++.+..+                   .+|...|
T Consensus         3 w~p~~-~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-------------------~~h~~~V   62 (317)
T d1vyhc1           3 WIPRP-PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-------------------KGHTDSV   62 (317)
T ss_dssp             CCCCS-SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-------------------CCCSSCE
T ss_pred             cCCCC-CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-------------------eCCCCcE
Confidence            44433 344678999999999999999999999999999999999998877754                   6789999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH  303 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  303 (513)
                      .+++|+|++.+++++..++.+.+|+.........+..|...+.++.|+|++..+++++.|+.+++|++.+++.+..+.+|
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  142 (317)
T d1vyhc1          63 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH  142 (317)
T ss_dssp             EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCC---------------------eEEE
Q 010296          304 QSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISND---------------------EFLS  360 (513)
Q Consensus       304 ~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~---------------------~~~~  360 (513)
                      ...+.+++|++++. +++++.|+.|++|++.+.... .+..+...+.++.++|++                     .+++
T Consensus       143 ~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             CCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence            99999999999875 558899999999999887765 556777788888877642                     3678


Q ss_pred             EeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe
Q 010296          361 GSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG  440 (513)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g  440 (513)
                      ++.|+.|++|++.+++++..+..                                     |...|++++|+|++++|++|
T Consensus       223 ~~~d~~i~~~~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~~~~~~~l~s~  265 (317)
T d1vyhc1         223 GSRDKTIKMWDVSTGMCLMTLVG-------------------------------------HDNWVRGVLFHSGGKFILSC  265 (317)
T ss_dssp             EETTSEEEEEETTTTEEEEEEEC-------------------------------------CSSCEEEEEECSSSSCEEEE
T ss_pred             ccCCCEEEEEECCCCcEEEEEeC-------------------------------------CCCCEEEEEECCCCCEEEEE
Confidence            99999999999999999888753                                     23349999999999999999


Q ss_pred             cCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          441 AGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       441 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      +.||.|+|||+.++ +.+..+..  |.++|++++|+|++++|+++ +.||+|++|+
T Consensus       266 ~~dg~i~iwd~~~~-~~~~~~~~--h~~~V~~~~~s~~~~~l~s~-s~Dg~i~iWd  317 (317)
T d1vyhc1         266 ADDKTLRVWDYKNK-RCMKTLNA--HEHFVTSLDFHKTAPYVVTG-SVDQTVKVWE  317 (317)
T ss_dssp             ETTTEEEEECCTTS-CCCEEEEC--CSSCEEEEEECSSSSCEEEE-ETTSEEEEEC
T ss_pred             ECCCeEEEEECCCC-cEEEEEcC--CCCCEEEEEEcCCCCEEEEE-eCCCeEEEeC
Confidence            99999999999987 45555544  78899999999999999998 8999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.1e-41  Score=308.20  Aligned_cols=287  Identities=15%  Similarity=0.206  Sum_probs=240.2

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA  236 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  236 (513)
                      .+++.+.+++++|+|+.|+.++ ++.|.+|++.+......+                   .+|...|++++|+|+|++||
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~-------------------~~H~~~v~~~~~sp~g~~la   74 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY-------------------TEHSHQTTVAKTSPSGYYCA   74 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEE-------------------CCCSSCEEEEEECTTSSEEE
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEE-------------------cCCCCCEEEEEEeCCCCeEe
Confidence            4566778899999999999886 567999999988776644                   68999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCccee--eeccCcCCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEEeecccCCeEEEEe
Q 010296          237 SGGLDRHIHLWDTRIQEHI--QAFPGHRGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYISTLFGHQSEVLTIDC  312 (513)
Q Consensus       237 s~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  312 (513)
                      +|+.||+|+||++.++...  ..+..|..+|.+++|+|++++|++++.  +..++||++.+++.+..+.+|...|.+++|
T Consensus        75 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~  154 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF  154 (311)
T ss_dssp             EEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE
T ss_pred             ccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999887644  557889999999999999999998875  466999999999999999999999999999


Q ss_pred             eCCCe--EEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296          313 LRKER--VLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLL  388 (513)
Q Consensus       313 ~~~~~--~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  388 (513)
                      +|++.  +++++.|+.|++||+++.... ....|...|.++.++|++. +++++.|+.|++|++.++..+..+...... 
T Consensus       155 ~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~-  233 (311)
T d1nr0a1         155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK-  233 (311)
T ss_dssp             CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS-
T ss_pred             cccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccc-
Confidence            99763  568889999999999988766 5567788999999999986 778999999999999999888776543221 


Q ss_pred             cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec-Ccc
Q 010296          389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL-PLV  467 (513)
Q Consensus       389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~  467 (513)
                                                   ..+|..+|++++|+|++++|++|+.||.|+|||+.++ +.++.+... ...
T Consensus       234 -----------------------------~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-~~~~~l~~~~~~~  283 (311)
T d1nr0a1         234 -----------------------------NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE  283 (311)
T ss_dssp             -----------------------------SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG
T ss_pred             -----------------------------cccccccccccccCCCCCEEEEEeCCCeEEEEECCCC-cEEEEEECCCCcc
Confidence                                         1456777999999999999999999999999999987 444444321 123


Q ss_pred             cEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          468 GFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       468 ~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      ..+.++.|  ++.+|+++ +.||.|++||.
T Consensus       284 ~~~~~~~~--~~~~l~s~-s~dG~i~~wd~  310 (311)
T d1nr0a1         284 DQQLGIIW--TKQALVSI-SANGFINFVNP  310 (311)
T ss_dssp             GCEEEEEE--CSSCEEEE-ETTCCEEEEET
T ss_pred             ceEEEEEe--cCCEEEEE-ECCCEEEEEeC
Confidence            34445554  55678888 89999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-41  Score=321.88  Aligned_cols=311  Identities=22%  Similarity=0.287  Sum_probs=236.5

Q ss_pred             hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      .+|++.|+||+|+|+|++||+|+ |++|+||++.++..+..+.......... ..........|...|++++|+|++++|
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP-ENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc-cccccccccCCCCCEEEEEECCCCCcc
Confidence            37999999999999999999987 8999999999998877653222111100 011122345688899999999999999


Q ss_pred             EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-
Q 010296          236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-  314 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-  314 (513)
                      ++|+.||.|++|+...++.+..+.+|...|.+++|++++..+++++.++.|++||+.+.........+.. ..++.+.+ 
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~  215 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPG  215 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEEECST
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccc-cccccccCC
Confidence            9999999999999999999999999999999999999999999999999999999999888777664444 45555554 


Q ss_pred             CC-eEEEEeCCCcEEEEecCCCeeeE--------EecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296          315 KE-RVLTVGRDRSMQLWKVPEESRLV--------FRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       315 ~~-~~~~~~~d~~i~iwd~~~~~~~~--------~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                      ++ .+++++.|+.|++|++.+.....        ...|...|.+++|+|++. |++++.||.|++||+.++.........
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  295 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  295 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence            55 45688999999999998876542        235677899999999985 789999999999999887654433221


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL  464 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~  464 (513)
                      ....                         .......|...|++++|+|++++|++|+.||.|+|||+.++ +.+..+.. 
T Consensus       296 ~~~~-------------------------~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~l~~-  348 (388)
T d1erja_         296 NSGT-------------------------CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQG-  348 (388)
T ss_dssp             ---C-------------------------EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEEC-
T ss_pred             cccc-------------------------eeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEeC-
Confidence            1100                         00001344556999999999999999999999999999987 45555544 


Q ss_pred             CcccEEEEEE------eecCCCEEEEEecCCCcccccccC
Q 010296          465 PLVGFVNSLA------FAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       465 ~~~~~v~~v~------~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                       |.+.|++++      |+|++.+||+| +.||+|+||++.
T Consensus       349 -H~~~V~~~~~~~~~~~spd~~~l~s~-s~Dg~I~iW~~~  386 (388)
T d1erja_         349 -HRNSVISVAVANGSSLGPEYNVFATG-SGDCKARIWKYK  386 (388)
T ss_dssp             -CSSCEEEEEECSSCTTCTTCEEEEEE-ETTSEEEEEEEE
T ss_pred             -CCCCEEEEEEecCcccCCCCCEEEEE-eCCCEEEEEeee
Confidence             788899886      56789999998 899999999874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-39  Score=301.55  Aligned_cols=288  Identities=24%  Similarity=0.411  Sum_probs=246.0

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ...++|+||.++|++|+|+|++++||||+.||+|+|||+.++..+..+                   ..|...|.+++|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~-------------------~~~~~~v~~v~~~  106 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-------------------PLRSSWVMTCAYA  106 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-------------------ECSCSCEEEEEEC
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEE-------------------ecccccEEeeEee
Confidence            345678999999999999999999999999999999999999877654                   5788999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcc----eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS  305 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  305 (513)
                      |++.+|++|+.|+.+.+|+.....    ....+.+|........... +..++....+.....+.............+..
T Consensus       107 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (340)
T d1tbga_         107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTG  185 (340)
T ss_dssp             TTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSS
T ss_pred             ccceeeeeecccceeecccccccccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccce
Confidence            999999999999999999976543    4456677777666665554 46778888899999999988887777777888


Q ss_pred             CeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEee
Q 010296          306 EVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       306 ~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      .+....+.+.. .+++++.++.|++||++++... .+..|...|.+++|+|++. |++|+.||.|++|++.....+..+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~  265 (340)
T d1tbga_         186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             eEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc
Confidence            89999888876 5568889999999999988876 5677889999999999985 7899999999999999988877664


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeee
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLY  462 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~  462 (513)
                      .                                   ..+...|++++|+|++++|++|+.||.|+|||+.++ ..+..+.
T Consensus       266 ~-----------------------------------~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~  309 (340)
T d1tbga_         266 H-----------------------------------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLA  309 (340)
T ss_dssp             C-----------------------------------TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC-CEEEEEC
T ss_pred             c-----------------------------------ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC-cEEEEEc
Confidence            3                                   223344999999999999999999999999999887 4444444


Q ss_pred             ecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          463 NLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       463 ~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      .  |.++|++|+|+|++++|++| +.||.|++||
T Consensus       310 ~--H~~~V~~l~~s~d~~~l~s~-s~Dg~v~iWd  340 (340)
T d1tbga_         310 G--HDNRVSCLGVTDDGMAVATG-SWDSFLKIWN  340 (340)
T ss_dssp             C--CSSCEEEEEECTTSSCEEEE-ETTSCEEEEC
T ss_pred             C--CCCCEEEEEEeCCCCEEEEE-ccCCEEEEeC
Confidence            3  78999999999999999998 8999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-38  Score=290.91  Aligned_cols=288  Identities=15%  Similarity=0.193  Sum_probs=226.1

Q ss_pred             chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ..+++.||.++|++|+|+|++++|+||+.||+|++||+.+++.+..+                  ...|...|++++|+|
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~------------------~~~h~~~v~~v~~~~   65 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF------------------PDVHATMITGIKTTS   65 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS------------------SCSCSSCEEEEEECT
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE------------------cCCCCCcEEEEEeec
Confidence            35678899999999999999999999999999999999998877644                  346889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcce---eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEH---IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV  307 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  307 (513)
                      ++.+ ++++.|+.+++|++.....   ......+...+.+++|+|++.++++++ ++.+.+|+...  .....  ....+
T Consensus        66 ~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~  139 (299)
T d1nr0a2          66 KGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNS  139 (299)
T ss_dssp             TSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCE
T ss_pred             ccee-ecccceeeEEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc--ccccc
Confidence            9875 5566799999999865432   122334778899999999998776665 56899999543  22222  44567


Q ss_pred             EEEEeeCCCe-EEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          308 LTIDCLRKER-VLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       308 ~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      .+++|+|++. +++++.++.|++||+.+....  ....|...|.+++|+|++. +++++.++.|++|++.++..+.....
T Consensus       140 ~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         140 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8899999875 558889999999999877654  4567888999999999885 77999999999999988765443221


Q ss_pred             CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296          384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN  463 (513)
Q Consensus       384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~  463 (513)
                      .                                  ..|...|++++|+|++++|++|+.||.|+|||+.+..........
T Consensus       220 ~----------------------------------~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  265 (299)
T d1nr0a2         220 W----------------------------------TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG  265 (299)
T ss_dssp             C----------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT
T ss_pred             c----------------------------------cccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEec
Confidence            0                                  345566999999999999999999999999999887433323332


Q ss_pred             cCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      ..+...|.++.| +++++|+++ +.|+.|++|++.
T Consensus       266 ~~~~~~v~~~~~-~~~~~l~s~-s~D~~i~iWdl~  298 (299)
T d1nr0a2         266 AHAMSSVNSVIW-LNETTIVSA-GQDSNIKFWNVP  298 (299)
T ss_dssp             SSTTSCEEEEEE-EETTEEEEE-ETTSCEEEEECC
T ss_pred             CCCCCcEEEEEE-CCCCEEEEE-eCCCEEEEEecc
Confidence            234566777755 567889988 899999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.4e-39  Score=302.27  Aligned_cols=285  Identities=14%  Similarity=0.157  Sum_probs=227.9

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ..+|+|++|+|++++||+|+.||.|+||++.+++.....                 .+.+|..+|++|+|+|++++|++|
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s~   69 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVTC   69 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEE-----------------EecCCCCCEEEEEECCCCCEEEEE
Confidence            578999999999999999999999999999877533221                 246899999999999999999999


Q ss_pred             eCCCcEEEEeCCCcce--eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce----eEEeecccCCeEEEEe
Q 010296          239 GLDRHIHLWDTRIQEH--IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY----ISTLFGHQSEVLTIDC  312 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~  312 (513)
                      +.|+.|+|||+.++..  ...+.+|...|++++|+|++++|++++.|+.|++|++.....    ......|...|.+++|
T Consensus        70 s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~  149 (371)
T d1k8kc_          70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW  149 (371)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred             ECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccc
Confidence            9999999999987653  455677899999999999999999999999999999876543    2334568889999999


Q ss_pred             eCCCe-EEEEeCCCcEEEEecCCCe-------------------eeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEe
Q 010296          313 LRKER-VLTVGRDRSMQLWKVPEES-------------------RLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWS  371 (513)
Q Consensus       313 ~~~~~-~~~~~~d~~i~iwd~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd  371 (513)
                      +|++. +++++.|+.|++|++....                   ......|...+.+++|+|++. +++++.|+.|++||
T Consensus       150 ~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd  229 (371)
T d1k8kc_         150 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD  229 (371)
T ss_dssp             CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             cccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEe
Confidence            99884 5588999999999975432                   123456777899999999985 77999999999999


Q ss_pred             cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      +.+++.+..+...                                     ..+|.+++|+|++++|++|+ |+.+++|..
T Consensus       230 ~~~~~~~~~~~~~-------------------------------------~~~v~s~~fs~d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         230 ADKKMAVATLASE-------------------------------------TLPLLAVTFITESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             GGGTTEEEEEECS-------------------------------------SCCEEEEEEEETTEEEEEET-TSSCEEEEE
T ss_pred             eecccceeeeecc-------------------------------------cccceeeeecCCCCEEEEEc-CCceEEEEe
Confidence            9999988887532                                     23499999999998888765 777888776


Q ss_pred             CCCCcceeeee--------------------------------------ecCcccEEEEEEeecCCC----EEEEEecCC
Q 010296          452 ESETKDIQPLY--------------------------------------NLPLVGFVNSLAFAKSGQ----FLIAGVGQE  489 (513)
Q Consensus       452 ~~~~~~~~~~~--------------------------------------~~~~~~~v~~v~~sp~~~----~l~~~~~~d  489 (513)
                      ......+....                                      ...|.+.|+++++.|.+.    .++++ |.|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~-g~D  350 (371)
T d1k8kc_         272 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT-GMD  350 (371)
T ss_dssp             ETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEE-ETT
T ss_pred             eCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEE-cCC
Confidence            54321111100                                      002677899999988653    46666 999


Q ss_pred             CcccccccCC
Q 010296          490 PRLGRWGHLP  499 (513)
Q Consensus       490 g~v~~W~~~~  499 (513)
                      |.|++|++..
T Consensus       351 g~v~iW~~~~  360 (371)
T d1k8kc_         351 GGMSIWDVRS  360 (371)
T ss_dssp             SEEEEEEHHH
T ss_pred             CeEEEEeCCc
Confidence            9999998743

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-38  Score=291.39  Aligned_cols=257  Identities=16%  Similarity=0.178  Sum_probs=217.7

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH  222 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (513)
                      +|+.......+.+.+|.+.|++++|+|+|++||+|+.||+|+||++.++......                 .+..|..+
T Consensus        42 i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~-----------------~~~~~~~~  104 (311)
T d1nr0a1          42 TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-----------------TIPVFSGP  104 (311)
T ss_dssp             EEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-----------------EEECSSSC
T ss_pred             EEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccc-----------------ccccccCc
Confidence            4555566677778899999999999999999999999999999999987654321                 23578899


Q ss_pred             EEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeEE
Q 010296          223 ILALAVSSDGRYLASGGL--DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYIST  299 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~  299 (513)
                      |.+++|+|++++|++++.  +..++||++.+++.+..+.+|...|++++|+|++++ |++|+.|+.|++||+++++....
T Consensus       105 v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~  184 (311)
T d1nr0a1         105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST  184 (311)
T ss_dssp             EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccc
Confidence            999999999999999885  456999999999999999999999999999999886 77899999999999999999999


Q ss_pred             eecccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeEE--------ecCCCCeeEEEeecCCe-EEEEeCCCCEEE
Q 010296          300 LFGHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLVF--------RAPASSLECCCFISNDE-FLSGSDDGSIEL  369 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~--------~~~~~~v~~~~~~~~~~-~~~~~~dg~i~i  369 (513)
                      +..|...|.++.|+|++. +++++.|+.|++|++..+.....        .+|...|.+++|+|++. |++|+.||.|+|
T Consensus       185 ~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~i  264 (311)
T d1nr0a1         185 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI  264 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEE
Confidence            999999999999999875 55888999999999988765532        24677899999999886 789999999999


Q ss_pred             EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296          370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW  449 (513)
Q Consensus       370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw  449 (513)
                      ||+.+++++.++......                                  ...+.++.  +++.+|++++.||.|++|
T Consensus       265 wd~~t~~~~~~l~~~~~~----------------------------------~~~~~~~~--~~~~~l~s~s~dG~i~~w  308 (311)
T d1nr0a1         265 WNVATLKVEKTIPVGTRI----------------------------------EDQQLGII--WTKQALVSISANGFINFV  308 (311)
T ss_dssp             EETTTTEEEEEEECCSSG----------------------------------GGCEEEEE--ECSSCEEEEETTCCEEEE
T ss_pred             EECCCCcEEEEEECCCCc----------------------------------cceEEEEE--ecCCEEEEEECCCEEEEE
Confidence            999999999888654321                                  11144444  456689999999999999


Q ss_pred             EeC
Q 010296          450 AIE  452 (513)
Q Consensus       450 d~~  452 (513)
                      |..
T Consensus       309 d~d  311 (311)
T d1nr0a1         309 NPE  311 (311)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            963

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-36  Score=282.79  Aligned_cols=241  Identities=17%  Similarity=0.311  Sum_probs=216.1

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY  234 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  234 (513)
                      ..+|.+.|++|+|+|++++|++|+.||+|++||+.........                 ....|...|.+++|+|++.+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~~~~~v~~~~~~~~~~~  155 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA-----------------ELTSSAPACYALAISPDSKV  155 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE-----------------EEECSSSCEEEEEECTTSSE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccc-----------------cccccccccccccccccccc
Confidence            4579999999999999999999999999999998765432211                 23568888999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296          235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  314 (513)
                      |++++.++.|++|++.++++......|...|.+++|++++..+++++.|+.|++||+++++.+..+. +...|.+++|+|
T Consensus       156 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~  234 (337)
T d1gxra_         156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP  234 (337)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcc
Confidence            9999999999999999999999999999999999999999999999999999999999998887765 889999999999


Q ss_pred             CC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296          315 KE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK  392 (513)
Q Consensus       315 ~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  392 (513)
                      ++ .+++++.++.|++|++..........|...|.+++|+|++. |++++.||.|++||+.+++++..+...        
T Consensus       235 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--------  306 (337)
T d1gxra_         235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES--------  306 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--------
T ss_pred             cccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC--------
Confidence            87 45688999999999999999888889999999999999985 789999999999999999988776432        


Q ss_pred             CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                                                    ..|++++|+|++++|++|+.||+|+|||+
T Consensus       307 ------------------------------~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         307 ------------------------------SSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ------------------------------SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ------------------------------CCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                                          23999999999999999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=275.10  Aligned_cols=291  Identities=20%  Similarity=0.343  Sum_probs=227.2

Q ss_pred             CcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296          147 EATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL  226 (513)
Q Consensus       147 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (513)
                      .+.++.++|+||.+.|.+ +++++|++||||+.||+|+|||+.+++.+..+                   .+|...|+++
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~-------------------~~h~~~V~~v   63 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-------------------VGHTGGVWSS   63 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-------------------CCCSSCEEEE
T ss_pred             CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEE-------------------eCCCCCEEEE
Confidence            344566789999999865 46678999999999999999999999887754                   6899999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCe--------------------------------------EEE
Q 010296          227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPV--------------------------------------SCL  268 (513)
Q Consensus       227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v--------------------------------------~~~  268 (513)
                      +|+|+  +|++|+.|+.+++|+............+...+                                      ...
T Consensus        64 ~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  141 (342)
T d2ovrb2          64 QMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR  141 (342)
T ss_dssp             EEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred             EeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccce
Confidence            99974  99999999999999987654433222221111                                      112


Q ss_pred             EEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCe
Q 010296          269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSL  347 (513)
Q Consensus       269 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v  347 (513)
                      .+.+....+++++.++.|++||+.....+..+.+|...+..+.+. ...+++++.|+.|++||+.....+ ....|...+
T Consensus       142 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v  220 (342)
T d2ovrb2         142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT  220 (342)
T ss_dssp             EEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC-SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE
T ss_pred             eeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCC-CCEEEEEeCCCeEEEeecccceeeeEecccccce
Confidence            233455678889999999999999998888888888877776653 346779999999999999988766 566777788


Q ss_pred             eEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEE
Q 010296          348 ECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSS  427 (513)
Q Consensus       348 ~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~  427 (513)
                      .++.++++ .|++++.||.|++|++...+....+....                                  .|...+.+
T Consensus       221 ~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~----------------------------------~~~~~~~~  265 (342)
T d2ovrb2         221 SGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPN----------------------------------KHQSAVTC  265 (342)
T ss_dssp             EEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECSTT----------------------------------SCSSCEEE
T ss_pred             eEEecCCC-EEEEEcCCCEEEEEecccccccccccccc----------------------------------eeeeceee
Confidence            88877654 78999999999999999988877775432                                  23333666


Q ss_pred             EEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee---cCcccEEEEEEeecCCCEEEEEecCCCc----ccccccCC
Q 010296          428 VTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN---LPLVGFVNSLAFAKSGQFLIAGVGQEPR----LGRWGHLP  499 (513)
Q Consensus       428 ~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~---~~~~~~v~~v~~sp~~~~l~~~~~~dg~----v~~W~~~~  499 (513)
                      +.++  ++++++|+.||.|+|||+.++ +.+..+..   ..|.+.|++++|+|++.+|++| +.||+    |++||+..
T Consensus       266 ~~~~--~~~~~s~s~Dg~i~iwd~~tg-~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g-~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         266 LQFN--KNFVITSSDDGTVKLWDLKTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG-SRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEC--SSEEEEEETTSEEEEEETTTC-CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE-CSSSSSCCEEEEEECCC
T ss_pred             cccC--CCeeEEEcCCCEEEEEECCCC-CEEEEEecccCCCCCCCEEEEEECCCCCEEEEE-eCCCCCeeEEEEEeCCC
Confidence            6665  469999999999999999988 44444432   2367889999999999998888 78885    89999864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-34  Score=269.38  Aligned_cols=279  Identities=18%  Similarity=0.266  Sum_probs=204.6

Q ss_pred             hhhhhccCCCe-EEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          152 FRVLLKHRQSV-TAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       152 ~~~~~~h~~~V-~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      ..+|+||...| +|++|  ++++|+||+.||+|+|||+.+++.+..+                   .+|..+|++|+|+|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l-------------------~~H~~~V~~l~~s~   63 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-------------------SGHDGGVWALKYAH   63 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEE-------------------ECCSSCEEEEEEET
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEE-------------------ECCCCCEEEEEEcC
Confidence            45688998886 66655  6789999999999999999999887755                   68999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCC--CeEEEEEecCCCeEEEEeCCCcEEEEeC-----------------
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRG--PVSCLTFRQGTSELFSGSFDRTVKIWNA-----------------  291 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~-----------------  291 (513)
                      + .+|++|+.|+.|++|++...........+..  .+..+.+.+++.++++++.|+.|++|++                 
T Consensus        64 ~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  142 (355)
T d1nexb2          64 G-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL  142 (355)
T ss_dssp             T-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCE
T ss_pred             C-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecc
Confidence            5 5899999999999999987766544433222  2233344555555555555555555554                 


Q ss_pred             ----------------------------------------------CCCceeEEeecccCCeEEEEeeCCC-eEEEEeCC
Q 010296          292 ----------------------------------------------EDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRD  324 (513)
Q Consensus       292 ----------------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d  324 (513)
                                                                    .+++.+....++...+.++.+++.+ .+++++.|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  222 (355)
T d1nexb2         143 VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD  222 (355)
T ss_dssp             EESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred             ceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeeccccc
Confidence                                                          4444444445566677888888876 56688899


Q ss_pred             CcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccc
Q 010296          325 RSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISN  403 (513)
Q Consensus       325 ~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  403 (513)
                      +.|++|++.++..+ .+..|...|.++.+++ ..+++++.||.|++||+.+............                 
T Consensus       223 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------  284 (355)
T d1nexb2         223 TTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYHHTNL-----------------  284 (355)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCCCEEEECS-SEEEEECTTSEEEEEETTTCCEEEEEECTTC-----------------
T ss_pred             ceEEeeecccccccccccccccccccccccc-ceeeeeecccccccccccccceecccccCCc-----------------
Confidence            99999999988766 6677888999998875 4688999999999999988776544432110                 


Q ss_pred             ccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEE
Q 010296          404 GHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLI  483 (513)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  483 (513)
                                           .....+++++.+|++|+ ||.|+|||++++ +.+... ...|.++|++++|+|+  .++
T Consensus       285 ---------------------~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg-~~~~~~-~~~~~~~V~~v~~~~~--~~~  338 (355)
T d1nexb2         285 ---------------------SAITTFYVSDNILVSGS-ENQFNIYNLRSG-KLVHAN-ILKDADQIWSVNFKGK--TLV  338 (355)
T ss_dssp             ---------------------CCCCEEEECSSEEEEEE-TTEEEEEETTTC-CBCCSC-TTTTCSEEEEEEEETT--EEE
T ss_pred             ---------------------eEEEEEcCCCCEEEEEe-CCEEEEEECCCC-CEEEEE-ecCCCCCEEEEEEcCC--eEE
Confidence                                 22345677887777665 889999999987 333221 2347889999999986  344


Q ss_pred             EEecCCCcccccc
Q 010296          484 AGVGQEPRLGRWG  496 (513)
Q Consensus       484 ~~~~~dg~v~~W~  496 (513)
                      ++++.||+++||-
T Consensus       339 ~~~s~dg~~~l~~  351 (355)
T d1nexb2         339 AAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEESSSCEEEEE
T ss_pred             EEEECCCcEEEEE
Confidence            4548999987774

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-35  Score=270.21  Aligned_cols=284  Identities=14%  Similarity=0.130  Sum_probs=215.0

Q ss_pred             CCeEEEEECCCCCeEEEEeCCc-eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC-cccEEEEEEcC--CCCEE
Q 010296          160 QSVTAVALSEDDSKGFSASKDG-SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ-SKHILALAVSS--DGRYL  235 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~--~~~~l  235 (513)
                      +.+++++|+|+++.|+.++.+. .|+.|+..........                 .+.+| ...|++++|+|  ++.+|
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~-----------------~~~gh~~~~v~~v~fsP~~~g~~l   80 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVV-----------------QFTGHGSSVVTTVKFSPIKGSQYL   80 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEE-----------------EECTTTTSCEEEEEECSSTTCCEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceE-----------------EEeCCCCCCEEEEEEeeCCCCCEE
Confidence            3568999999999999876554 3566665443322111                 22455 56799999998  57899


Q ss_pred             EEEeCCCcEEEEeCCCccee--------eeccCcCCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCCceeEEeecccC
Q 010296          236 ASGGLDRHIHLWDTRIQEHI--------QAFPGHRGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDRAYISTLFGHQS  305 (513)
Q Consensus       236 ~s~~~dg~i~vwd~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~  305 (513)
                      ++|+.||+|+|||+..+...        ..+..|.++|.+++|++++++|++++.  ++.+.+|+..+++++..+.+|..
T Consensus        81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  160 (325)
T d1pgua1          81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ  160 (325)
T ss_dssp             EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred             EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence            99999999999998765432        234568899999999999999887654  67899999999999999999999


Q ss_pred             CeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeE----EecCCCCeeEEEeecCC-e-EEEEeCCCCEEEEecCCCCe
Q 010296          306 EVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLV----FRAPASSLECCCFISND-E-FLSGSDDGSIELWSLLRKKP  377 (513)
Q Consensus       306 ~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~-~-~~~~~~dg~i~iwd~~~~~~  377 (513)
                      .|.+++|+|++  .+++++.|+.|++|++...+...    ...+...|.+++|+|++ . +++++.||.|++||+++++.
T Consensus       161 ~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~  240 (325)
T d1pgua1         161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF  240 (325)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE
T ss_pred             ccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccc
Confidence            99999999976  35688999999999998766542    23456779999999964 3 77899999999999999999


Q ss_pred             eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcc
Q 010296          378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKD  457 (513)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~  457 (513)
                      +..+..+...                                 +...+.+++| |++++|++++.|+.|+|||+.++ +.
T Consensus       241 ~~~l~~~~~~---------------------------------v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~-~~  285 (325)
T d1pgua1         241 LKYIEDDQEP---------------------------------VQGGIFALSW-LDSQKFATVGADATIRVWDVTTS-KC  285 (325)
T ss_dssp             EEECCBTTBC---------------------------------CCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTT-EE
T ss_pred             cccccccccc---------------------------------cccceeeeec-cCCCEEEEEeCCCeEEEEECCCC-CE
Confidence            8887643321                                 1122444444 67899999999999999999987 45


Q ss_pred             eeeeeecCcccEEE--EEEeecCCCEEEEEecCCCccccccc
Q 010296          458 IQPLYNLPLVGFVN--SLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       458 ~~~~~~~~~~~~v~--~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      +..+....+...+.  ++.|.++ .+|+++ +.||.|++|++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~-s~dg~i~vwdl  325 (325)
T d1pgua1         286 VQKWTLDKQQLGNQQVGVVATGN-GRIISL-SLDGTLNFYEL  325 (325)
T ss_dssp             EEEEECCTTCGGGCEEEEEEEET-TEEEEE-ETTSCEEEEET
T ss_pred             EEEEEecCCcccCeEEEEEECCC-CEEEEE-ECCCEEEEEEC
Confidence            55544433333333  4444443 467777 89999999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-34  Score=272.30  Aligned_cols=282  Identities=15%  Similarity=0.307  Sum_probs=224.7

Q ss_pred             EEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc
Q 010296          174 GFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE  253 (513)
Q Consensus       174 l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~  253 (513)
                      .+.+..++.+.+|+..........               ......|...|+||+|+|+|++||+|+ |+.|+||++.+++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~   94 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVE---------------LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS   94 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEE---------------EEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC
T ss_pred             ccccCCCCcEEEeCCCCCcceeee---------------eEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccc
Confidence            446677888999997655433210               001236999999999999999999987 8999999999988


Q ss_pred             eeeecc------------------CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296          254 HIQAFP------------------GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK  315 (513)
Q Consensus       254 ~~~~~~------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  315 (513)
                      .+..+.                  .|...|++++|+|++++|++|+.||.|++|+...++.+..+.+|...|.++.++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (388)
T d1erja_          95 LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS  174 (388)
T ss_dssp             EEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             eEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccc
Confidence            776653                  35667999999999999999999999999999999999999999999999999998


Q ss_pred             C-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeec-CCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296          316 E-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFIS-NDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK  392 (513)
Q Consensus       316 ~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  392 (513)
                      + .+++++.++.+++|++.+........+.....++.+.+ ++. |++++.||.|++|+..++..+..+.......    
T Consensus       175 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~----  250 (388)
T d1erja_         175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG----  250 (388)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------
T ss_pred             cccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccc----
Confidence            7 56688999999999999988876666666666666665 444 7799999999999999998888775332211    


Q ss_pred             CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcce---------eeeee
Q 010296          393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDI---------QPLYN  463 (513)
Q Consensus       393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~---------~~~~~  463 (513)
                                                ..|...|++++|+|++++|++|+.||.|++||+.+.....         .....
T Consensus       251 --------------------------~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  304 (388)
T d1erja_         251 --------------------------TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY  304 (388)
T ss_dssp             --------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE
T ss_pred             --------------------------cCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeec
Confidence                                      4556679999999999999999999999999997652211         11222


Q ss_pred             cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      ..|...|++++|+|++++|+++ +.||.|++||...+..
T Consensus       305 ~~~~~~v~~~~~s~~~~~l~sg-~~dg~i~vwd~~~~~~  342 (388)
T d1erja_         305 IGHKDFVLSVATTQNDEYILSG-SKDRGVLFWDKKSGNP  342 (388)
T ss_dssp             ECCSSCEEEEEECGGGCEEEEE-ETTSEEEEEETTTCCE
T ss_pred             ccccceEEEEEECCCCCEEEEE-eCCCEEEEEECCCCcE
Confidence            3467889999999999999999 8999999999887654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-34  Score=273.94  Aligned_cols=287  Identities=16%  Similarity=0.168  Sum_probs=213.2

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ..+..+.+|.++|++|+|+|++++|++|+.|++|+||++.++.....+                 ...+|...|++++|+
T Consensus        42 ~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~-----------------~~~~~~~~v~~i~~~  104 (371)
T d1k8kc_          42 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL-----------------VILRINRAARCVRWA  104 (371)
T ss_dssp             EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE-----------------ECCCCSSCEEEEEEC
T ss_pred             EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc-----------------ccccccccccccccc
Confidence            456778899999999999999999999999999999999877654332                 245788899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcce----eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-----------
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-----------  294 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------  294 (513)
                      |++++|++|+.++.|++|++.....    ......|...|.+++|+|++++|++|+.|+.|++|++...           
T Consensus       105 p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~  184 (371)
T d1k8kc_         105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW  184 (371)
T ss_dssp             TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred             cccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccc
Confidence            9999999999999999999866543    3445678999999999999999999999999999998643           


Q ss_pred             -------ceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCC
Q 010296          295 -------AYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDG  365 (513)
Q Consensus       295 -------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg  365 (513)
                             ..+.....|...|.+++|+|++ .+++++.|+.|++||+..+..+ .+..+..+|.+++|+|++.+++++.|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTS
T ss_pred             cccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCC
Confidence                   2345556788999999999987 5568999999999999887766 567788899999999999988888899


Q ss_pred             CEEEEecCCCCeeEEeecCCCcccCC--CCcccCcCcccc---ccCCCCCCCCCCcCCCCCcceEEEEEEecCC----CE
Q 010296          366 SIELWSLLRKKPVYIVKNAHPLLDGL--KNFEQDEGKISN---GHSENGNLNPGSYHSSSAYSWVSSVTVCGGS----DL  436 (513)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~----~~  436 (513)
                      .+++|..........+..........  ...... ..+..   .....+...........|...|+++++.+.+    ..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~  343 (371)
T d1k8kc_         265 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR-ERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ  343 (371)
T ss_dssp             SCEEEEEETTTTEEEECCCCCCC--------CHH-HHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSE
T ss_pred             ceEEEEeeCCCceEEEeeeecCccccccccccce-eeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEE
Confidence            88887766544333332111110000  000000 00000   0000111111112224578889999998855    36


Q ss_pred             EEEecCCCcEEEEEeCCC
Q 010296          437 AASGAGNGSVRLWAIESE  454 (513)
Q Consensus       437 l~~g~~dg~v~vwd~~~~  454 (513)
                      |+|++.||.|+|||+++.
T Consensus       344 ~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         344 FCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             EEEEETTSEEEEEEHHHH
T ss_pred             EEEEcCCCeEEEEeCCcC
Confidence            899999999999999764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.1e-34  Score=261.17  Aligned_cols=253  Identities=21%  Similarity=0.357  Sum_probs=229.5

Q ss_pred             cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      ++|+......+..+.+|.+.|++++|+|++.++++++.++.+.+|+.........                   ...|..
T Consensus        42 ~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~  102 (317)
T d1vyhc1          42 KVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT-------------------MHGHDH  102 (317)
T ss_dssp             EEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC-------------------CCCCSS
T ss_pred             EEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccc-------------------cccccc
Confidence            4677777888889999999999999999999999999999999999887776553                   367888


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      .+.++.|+|++..+++++.|+.+++|++.+++.+..+.+|...+.+++|+|++.+|++++.|+.|++|++.++..+..+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~  182 (317)
T d1vyhc1         103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR  182 (317)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCeEEEEeeCCC---------------------eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-E
Q 010296          302 GHQSEVLTIDCLRKE---------------------RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-F  358 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~---------------------~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~  358 (513)
                      .|...+.++.++|+.                     .+++++.|+.|++|++.++..+ .+..|...|.+++++|++. |
T Consensus       183 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  262 (317)
T d1vyhc1         183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI  262 (317)
T ss_dssp             CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCE
T ss_pred             cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEE
Confidence            999999999987743                     2668899999999999988876 6778899999999999986 7


Q ss_pred             EEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE
Q 010296          359 LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA  438 (513)
Q Consensus       359 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  438 (513)
                      ++++.||.|+|||+.+++++..+..                                     |...|++++|+|++++|+
T Consensus       263 ~s~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------h~~~V~~~~~s~~~~~l~  305 (317)
T d1vyhc1         263 LSCADDKTLRVWDYKNKRCMKTLNA-------------------------------------HEHFVTSLDFHKTAPYVV  305 (317)
T ss_dssp             EEEETTTEEEEECCTTSCCCEEEEC-------------------------------------CSSCEEEEEECSSSSCEE
T ss_pred             EEEECCCeEEEEECCCCcEEEEEcC-------------------------------------CCCCEEEEEEcCCCCEEE
Confidence            8999999999999999999888753                                     334499999999999999


Q ss_pred             EecCCCcEEEEE
Q 010296          439 SGAGNGSVRLWA  450 (513)
Q Consensus       439 ~g~~dg~v~vwd  450 (513)
                      +|+.||+|+|||
T Consensus       306 s~s~Dg~i~iWd  317 (317)
T d1vyhc1         306 TGSVDQTVKVWE  317 (317)
T ss_dssp             EEETTSEEEEEC
T ss_pred             EEeCCCeEEEeC
Confidence            999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-33  Score=258.07  Aligned_cols=246  Identities=14%  Similarity=0.173  Sum_probs=200.5

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      +.+|..+|++|+|+|++++|++|+.||+|++||+.+++.+..+. .|...|++++|+|++. +++++.|+.|++|++...
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~   86 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGS   86 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSS
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCCc
Confidence            47999999999999999999999999999999999999888875 6899999999999986 566778999999998654


Q ss_pred             ce---eEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEE
Q 010296          295 AY---ISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELW  370 (513)
Q Consensus       295 ~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iw  370 (513)
                      ..   ......+...+.++++++++.+++++.++.+.+|+....   ........+.+++++|++. +++|+.+|.|++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~  163 (299)
T d1nr0a2          87 GVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL---TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY  163 (299)
T ss_dssp             SSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE---EEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccc
Confidence            32   222345777899999999999888888899999985432   2223445678899999986 7799999999999


Q ss_pred             ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                      |+.+++.......                                    .|...|++++|+|++++|++++.||.|++|+
T Consensus       164 d~~~~~~~~~~~~------------------------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~  207 (299)
T d1nr0a2         164 KLSGASVSEVKTI------------------------------------VHPAEITSVAFSNNGAFLVATDQSRKVIPYS  207 (299)
T ss_dssp             EEETTEEEEEEEE------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccc------------------------------------ccccccccccccccccccccccccccccccc
Confidence            9988765544332                                    2234499999999999999999999999999


Q ss_pred             eCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          451 IESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      +.++...........|...|++++|+|++++|+++ +.||.|++|++.....
T Consensus       208 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sg-s~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         208 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG-SLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTCTTS
T ss_pred             ccccccccccccccccccccccccccccccceEEE-cCCCEEEEEECCCCCc
Confidence            98763322222222378899999999999999999 8999999999876543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.4e-34  Score=258.91  Aligned_cols=268  Identities=17%  Similarity=0.192  Sum_probs=208.8

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      +++++|.+|.++|++|+|+|    |+||+.||+|++||+.++.                        ..|...|.+++|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~------------------------~~h~~~V~~~~~~   55 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------------------------QDHSNLIVSLDNS   55 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE------------------------CCCCSCEEEEECC
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC------------------------CCCCCCEEEEEec
Confidence            56788999999999999998    9999999999999987532                        4688899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEE
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLT  309 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  309 (513)
                      +++ .+++++.|++|++|++...+       ....+.++++++++..++++ .++.+.+|+..++..+..+. ....+.+
T Consensus        56 ~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~  125 (287)
T d1pgua2          56 KAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSA  125 (287)
T ss_dssp             STT-CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred             CCC-eEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecc-ccceeee
Confidence            765 57899999999999975432       33457788898887666654 56678999999988887776 3344444


Q ss_pred             EEeeCCC-eEEEEeCC-CcEEEEecCCCeeeEE--ecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296          310 IDCLRKE-RVLTVGRD-RSMQLWKVPEESRLVF--RAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       310 ~~~~~~~-~~~~~~~d-~~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                      +  ++++ .+++++.+ +.+++|++........  ..+...+.+++|+|++. |++|+.+|.|++||+.++.......  
T Consensus       126 ~--~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--  201 (287)
T d1pgua2         126 V--SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW--  201 (287)
T ss_dssp             E--EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS--
T ss_pred             e--eccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccc--
Confidence            4  4443 55566655 5799999876554432  23567899999999986 7799999999999998887654332  


Q ss_pred             CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC----------CCEEEEecCCCcEEEEEeCCC
Q 010296          385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG----------SDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----------~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                                        ..|...|.+++|+|.          +.+|++|+.|+.|+||++...
T Consensus       202 ----------------------------------~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~  247 (287)
T d1pgua2         202 ----------------------------------AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  247 (287)
T ss_dssp             ----------------------------------CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             ----------------------------------cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence                                              334455999999874          468999999999999999876


Q ss_pred             CcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296          455 TKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~  497 (513)
                      ...+..+.  .|...|++++|+|++ .|+++ |.|+.|++|++
T Consensus       248 ~~~~~~~~--~h~~~V~~v~~~~~~-~l~s~-g~D~~v~iW~i  286 (287)
T d1pgua2         248 MKIIKALN--AHKDGVNNLLWETPS-TLVSS-GADACIKRWNV  286 (287)
T ss_dssp             TCCEEETT--SSTTCEEEEEEEETT-EEEEE-ETTSCEEEEEE
T ss_pred             CeEEEEeC--CCCCCeEEEEECCCC-EEEEE-ECCCeEEEEEE
Confidence            44444333  388999999999986 57777 78999999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-33  Score=261.43  Aligned_cols=308  Identities=11%  Similarity=0.117  Sum_probs=218.3

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      +.++.+++|.+.|++|+|+|++++||+|+.||+|+|||+.++.....+                ....+|..+|++++|+
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~----------------~~~~~h~~~V~~v~f~   65 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFI   65 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE----------------EEecCCCCCEEEEEEe
Confidence            346678899999999999999999999999999999999876543322                0123689999999999


Q ss_pred             CC-CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCC-eEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe----ecc
Q 010296          230 SD-GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGP-VSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL----FGH  303 (513)
Q Consensus       230 ~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~  303 (513)
                      |+ +.+|++|+.||.|++|++...........+... .....+.++...+++++.++.+++||++++......    ..+
T Consensus        66 ~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~  145 (342)
T d1yfqa_          66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN  145 (342)
T ss_dssp             ESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred             CCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccc
Confidence            86 558999999999999999888776666554443 455566778889999999999999998764433222    212


Q ss_pred             --cCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCeee----EEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCC
Q 010296          304 --QSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEESRL----VFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLR  374 (513)
Q Consensus       304 --~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~  374 (513)
                        ......+.+.+. ..+++++.++.|++|++......    ........+.+..+.+..  .+++++.+|.+.+|++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         146 NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             cccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecC
Confidence              223344455554 46779999999999999765432    333444555665655543  488999999999999865


Q ss_pred             CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                      .............                      ...........|...|++++|+|++++||+|+.||.|+|||+.++
T Consensus       226 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         226 QGDDYNSSKRFAF----------------------RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             TCCSTTCTTCEEE----------------------ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             Ccceeecccccee----------------------eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence            4322111100000                      000000111445566999999999999999999999999999987


Q ss_pred             CcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296          455 TKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                       +.   +..+++...+..++|+|++++|+++++ |..+++|.....
T Consensus       284 -~~---l~~~~~~~~~~~~~~s~~~~~l~~a~s-dd~~~~~~~~~~  324 (342)
T d1yfqa_         284 -KK---IKNFAKFNEDSVVKIACSDNILCLATS-DDTFKTNAAIDQ  324 (342)
T ss_dssp             -EE---EEECCCCSSSEEEEEEECSSEEEEEEE-CTHHHHCSSSCT
T ss_pred             -cE---EEEecCCCCCEEEEEEeCCCEEEEEEc-CCcEEEeeeeCC
Confidence             33   333333344566789999999999954 558888976443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.7e-32  Score=250.54  Aligned_cols=248  Identities=20%  Similarity=0.364  Sum_probs=213.6

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      +.+|...|++|+|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++.++++++.|+.|.+|+.....
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~  130 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSC
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999986543


Q ss_pred             ----eeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEE
Q 010296          296 ----YISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIEL  369 (513)
Q Consensus       296 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~i  369 (513)
                          ....+.+|...........+..++....+.....+........ ....+...+....+.+.+. +++++.|+.|++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  210 (340)
T d1tbga_         131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL  210 (340)
T ss_dssp             SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             cccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEE
Confidence                3556677888777777777888889999999999988776655 4556667788888888775 779999999999


Q ss_pred             EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296          370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW  449 (513)
Q Consensus       370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw  449 (513)
                      ||+.+++++..+..                                     |...|++++|+|++++|++|+.||.|++|
T Consensus       211 ~d~~~~~~~~~~~~-------------------------------------h~~~i~~v~~~p~~~~l~s~s~d~~i~~~  253 (340)
T d1tbga_         211 WDVREGMCRQTFTG-------------------------------------HESDINAICFFPNGNAFATGSDDATCRLF  253 (340)
T ss_dssp             EETTTTEEEEEECC-------------------------------------CSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EECCCCcEEEEEeC-------------------------------------CCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence            99999998888743                                     33449999999999999999999999999


Q ss_pred             EeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          450 AIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       450 d~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      ++... ..+..+....+...|++++|+|++++|+++ +.||.|++|+...+..
T Consensus       254 ~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g-~~dg~i~iwd~~~~~~  304 (340)
T d1tbga_         254 DLRAD-QELMTYSHDNIICGITSVSFSKSGRLLLAG-YDDFNCNVWDALKADR  304 (340)
T ss_dssp             ETTTT-EEEEEECCTTCCSCEEEEEECSSSCEEEEE-ETTSCEEEEETTTCCE
T ss_pred             eeccc-ccccccccccccCceEEEEECCCCCEEEEE-ECCCEEEEEECCCCcE
Confidence            99887 444444444567789999999999999999 8999999999877643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-31  Score=243.49  Aligned_cols=276  Identities=20%  Similarity=0.387  Sum_probs=217.9

Q ss_pred             cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      +.++....|...|+|++|  ++++||||+.||+|+|||+.+++.+..+                   .+|...|++|+| 
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l-------------------~~H~~~V~~v~~-   63 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-------------------TGHTGSVLCLQY-   63 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-------------------CCCSSCEEEEEC-
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEE-------------------ecCCCCEeeeec-
Confidence            334556678899999765  7899999999999999999999888765                   689999999987 


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce---eEEeecccCC
Q 010296          230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY---ISTLFGHQSE  306 (513)
Q Consensus       230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~  306 (513)
                       ++++|++|+.|+.|++|++..+........+....  ..+.+....++++..++.+.+|++.+...   ...+..|...
T Consensus        64 -~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (293)
T d1p22a2          64 -DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  140 (293)
T ss_dssp             -CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred             -ccceeeccccccccccccccccccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccc
Confidence             57899999999999999999988877766544433  34555667899999999999999987653   3445667888


Q ss_pred             eEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296          307 VLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAH  385 (513)
Q Consensus       307 v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (513)
                      +..+.+.+ ..+++++.|+.|++|++.+...+ .+..+...+..+.+++ ..+++++.||.|++||+.+...+.......
T Consensus       141 v~~~~~~~-~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  218 (293)
T d1p22a2         141 VNVVDFDD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHE  218 (293)
T ss_dssp             EEEEEEET-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             cccceecc-cccccccCCCceeeecCCCCcEEEEEcccccccccccCCC-CeEEEecCCCEEEEEecccceeeeeecccc
Confidence            88777754 45678899999999999988766 5666777777777654 368899999999999999998887765322


Q ss_pred             CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC--------cc
Q 010296          386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET--------KD  457 (513)
Q Consensus       386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~--------~~  457 (513)
                      .                                     .+.  .+++++.+|++|+.||.|++||+....        ..
T Consensus       219 ~-------------------------------------~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  259 (293)
T d1p22a2         219 E-------------------------------------LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC  259 (293)
T ss_dssp             S-------------------------------------CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred             e-------------------------------------eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCcee
Confidence            1                                     244  456778899999999999999986431        11


Q ss_pred             eeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          458 IQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       458 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      +..+  ..|.+.|++|+|+  +.+|+++ +.||+|++||
T Consensus       260 ~~~~--~~H~~~V~~v~~d--~~~l~s~-s~Dg~i~iWD  293 (293)
T d1p22a2         260 LRTL--VEHSGRVFRLQFD--EFQIVSS-SHDDTILIWD  293 (293)
T ss_dssp             EEEE--CCCSSCCCCEEEC--SSCEEEC-CSSSEEEEEC
T ss_pred             eEEe--cCCCCCEEEEEEc--CCEEEEE-ecCCEEEEeC
Confidence            2222  2378899999984  5678888 8999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-31  Score=248.65  Aligned_cols=257  Identities=15%  Similarity=0.174  Sum_probs=197.7

Q ss_pred             cchhhhhcc-CCCeEEEEECC--CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296          150 DEFRVLLKH-RQSVTAVALSE--DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL  226 (513)
Q Consensus       150 ~~~~~~~~h-~~~V~~~~~s~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (513)
                      ..+..+.+| ...|++++|+|  ++.+|++|+.||+|+|||+..+.....+....           ......|..+|.++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~v  121 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV-----------KSEFQVLAGPISDI  121 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEE-----------EEEEECCSSCEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccc-----------ccccccccCcEEEE
Confidence            345566677 56899999998  57899999999999999998766544321000           00124578889999


Q ss_pred             EEcCCCCEEEEEeC--CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeEEe---
Q 010296          227 AVSSDGRYLASGGL--DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYISTL---  300 (513)
Q Consensus       227 ~~s~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~---  300 (513)
                      +|++++++|++++.  ++.+++|++.+++.+..+.+|...|.+++|+|++.+ +++++.|+.|++|++...+....+   
T Consensus       122 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~  201 (325)
T d1pgua1         122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH  201 (325)
T ss_dssp             EECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS
T ss_pred             EECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccc
Confidence            99999999988764  678999999999999999999999999999999876 678999999999999887765554   


Q ss_pred             ecccCCeEEEEeeCC-C-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeE----EEeecCCeEEEEeCCCCEEEEecC
Q 010296          301 FGHQSEVLTIDCLRK-E-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLEC----CCFISNDEFLSGSDDGSIELWSLL  373 (513)
Q Consensus       301 ~~~~~~v~~~~~~~~-~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~----~~~~~~~~~~~~~~dg~i~iwd~~  373 (513)
                      ..|...|.+++|+|+ + .+++++.|+.|++||++++..+ .+..|...+..    +.+.+...|++++.|+.|+|||+.
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             cCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECC
Confidence            456778999999996 4 4568899999999999988776 44555555543    344334468999999999999999


Q ss_pred             CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      +++++..+......                                 ......++.+.++ .+|++++.||.|+|||+
T Consensus       282 ~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         282 TSKCVQKWTLDKQQ---------------------------------LGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTEEEEEEECCTTC---------------------------------GGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             CCCEEEEEEecCCc---------------------------------ccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            99998887643221                                 0011334444444 47899999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-31  Score=255.40  Aligned_cols=289  Identities=15%  Similarity=0.178  Sum_probs=200.5

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE------EE
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL------AL  226 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------~~  226 (513)
                      ...++|.+.|++|++++  ++|+||+.|++|+|||..+.......   .....          ...|...+.      .+
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~---~~~~~----------~~~~~~~~~~~~~~~~~   72 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK---DKSYS----------HFVHKSGLHHVDVLQAI   72 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG---GGEEE----------EECCTTCEEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccc---ceeEe----------eeeccCCceEeeeEeee
Confidence            45679999999999875  68999999999999998765432111   00000          112222222      22


Q ss_pred             EEcC-CCCEEEEEeCCCcEEEEeCCCcceeee----------ccCcCCCeEEEEEecC-----CCeEEEEeCCCcEEEEe
Q 010296          227 AVSS-DGRYLASGGLDRHIHLWDTRIQEHIQA----------FPGHRGPVSCLTFRQG-----TSELFSGSFDRTVKIWN  290 (513)
Q Consensus       227 ~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~----------~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd  290 (513)
                      .++. ++.++++++.||.|++|++........          ...+...+..++|.++     +.++++++.||.|++|+
T Consensus        73 ~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~  152 (393)
T d1sq9a_          73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  152 (393)
T ss_dssp             ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             ccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEE
Confidence            2222 345788999999999999764432111          1235567888888775     35789999999999999


Q ss_pred             CCCCc------------------eeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-------EEecCCC
Q 010296          291 AEDRA------------------YISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-------VFRAPAS  345 (513)
Q Consensus       291 ~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-------~~~~~~~  345 (513)
                      +....                  .......+...+.+++|+|++.+++++.|++|++||+.+++.+       .+..|..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~  232 (393)
T d1sq9a_         153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN  232 (393)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred             eecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence            74321                  0111123455688999999999999999999999999987765       2345788


Q ss_pred             CeeEEEeecCCe-EEEEeCCCC---EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCC
Q 010296          346 SLECCCFISNDE-FLSGSDDGS---IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSA  421 (513)
Q Consensus       346 ~v~~~~~~~~~~-~~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  421 (513)
                      .|.+++|+|++. |++|+.|++   |++||+.+++.+..+.........                        .....+|
T Consensus       233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~------------------------~~~~~gH  288 (393)
T d1sq9a_         233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA------------------------SLGEFAH  288 (393)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------------------------------CCBSB
T ss_pred             eEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccc------------------------eeeeecc
Confidence            999999999986 778888874   999999999998887643221100                        0111568


Q ss_pred             cceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEE----EEEeecCCCEEE
Q 010296          422 YSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVN----SLAFAKSGQFLI  483 (513)
Q Consensus       422 ~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~----~v~~sp~~~~l~  483 (513)
                      ..+|++|+|+|++++|++|+.|++|+|||+.++ +.+..+..  |...|.    .++|+|++..++
T Consensus       289 ~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g-~~~~~l~g--H~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNM--HCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEEC--CGGGCSSGGGCCCBCTTSCBCS
T ss_pred             cCceeeeccCCCCCeeEEECCCCEEEEEECCCC-CEEEEECC--cCCcccCCccEEEECCCCCEEE
Confidence            888999999999999999999999999999988 55555543  444333    345555555443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.98  E-value=2.4e-30  Score=242.84  Aligned_cols=309  Identities=9%  Similarity=0.017  Sum_probs=223.5

Q ss_pred             EEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC
Q 010296          163 TAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD  241 (513)
Q Consensus       163 ~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  241 (513)
                      +.-.||| ||+++|+++. |.|++|++.++....                     .+|...|.+++|+|+|++|++++.+
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~~   63 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGTR   63 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEET
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEcC
Confidence            4568999 9999999874 799999998876554                     2688899999999999999877655


Q ss_pred             C--cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE
Q 010296          242 R--HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL  319 (513)
Q Consensus       242 g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  319 (513)
                      .  .|++||+.+++.. .+..|...|.+++|+|++++|++++.++.+++|++.+++....+..+...+.+++|+|++.++
T Consensus        64 ~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  142 (360)
T d1k32a3          64 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI  142 (360)
T ss_dssp             TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred             CCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeee
Confidence            3  7999999887655 566799999999999999999999999999999999999988888899999999999998665


Q ss_pred             E-Ee----------CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCee-------EE
Q 010296          320 T-VG----------RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPV-------YI  380 (513)
Q Consensus       320 ~-~~----------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~-------~~  380 (513)
                      + +.          .++.+++|++.++.......+...+..++|+|+|. |++++.++.+.+|+.......       ..
T Consensus       143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~  222 (360)
T d1k32a3         143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV  222 (360)
T ss_dssp             EEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEE
T ss_pred             eeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEE
Confidence            3 22          34569999999998888888888899999999996 778999999999997664322       12


Q ss_pred             eecCCCcccCCCCcccCcCccccccCCC-C---CCCCCCcC------CCCCcceEEEEEEecC---CCEEEEecCCCcEE
Q 010296          381 VKNAHPLLDGLKNFEQDEGKISNGHSEN-G---NLNPGSYH------SSSAYSWVSSVTVCGG---SDLAASGAGNGSVR  447 (513)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~---~~~~~~~~------~~~~~~~i~~~~~s~~---~~~l~~g~~dg~v~  447 (513)
                      +.... .......+..+...+....... +   .+......      ...+...+..+.+.+.   +.++++++.++.|+
T Consensus       223 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  301 (360)
T d1k32a3         223 IPLIP-GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL  301 (360)
T ss_dssp             EESST-TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEE
T ss_pred             Eeccc-CccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEE
Confidence            21111 1111111222211111100000 0   00000000      0111122333333333   23567778899999


Q ss_pred             EEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296          448 LWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       448 vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                      +||+.++.  ..   .  +.+.|.+++|||||++|+++ +.||.|++|+...+...
T Consensus       302 ~~d~~~~~--~~---~--~~~~v~~~~~SpDG~~l~~~-~~Dg~i~v~d~~~~~~~  349 (360)
T d1k32a3         302 KYDVKTRK--VT---E--VKNNLTDLRLSADRKTVMVR-KDDGKIYTFPLEKPEDE  349 (360)
T ss_dssp             EEETTTCC--EE---E--EEEEEEEEEECTTSCEEEEE-ETTSCEEEEESSCTTSC
T ss_pred             EEECCCCe--EE---E--ecCCcCEEEECCCCCEEEEE-ECCCeEEEEECCCCCcc
Confidence            99998762  11   1  45679999999999999999 89999999999877543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.1e-30  Score=239.11  Aligned_cols=269  Identities=19%  Similarity=0.252  Sum_probs=201.6

Q ss_pred             cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChh--------------hhccC
Q 010296          142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEE--------------VLKSH  207 (513)
Q Consensus       142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~~~~  207 (513)
                      ++|+....+.++.+.+|.++|++|+|+|+ .+|++|+.|++|++|++..............              .+...
T Consensus        36 ~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (355)
T d1nexb2          36 RVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG  114 (355)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEE
T ss_pred             EEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeee
Confidence            46777788889999999999999999985 5899999999999999988765543321100              00000


Q ss_pred             C---------CCC--CCC-----------------------CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc
Q 010296          208 G---------AKD--PQG-----------------------RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE  253 (513)
Q Consensus       208 ~---------~~~--~~~-----------------------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~  253 (513)
                      .         ...  ...                       ....|...+  ..+.+++++++++..|+.|++||+.+++
T Consensus       115 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~  192 (355)
T d1nexb2         115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMK  192 (355)
T ss_dssp             ETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTE
T ss_pred             cCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccc--cccccccceeeeecccceeeeeeccccc
Confidence            0         000  000                       000111112  2334456777888888888888888888


Q ss_pred             eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecC
Q 010296          254 HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVP  333 (513)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~  333 (513)
                      .+..+.++...+.++.|+|++.++++++.|+.|++|++.++..+..+.+|...|.++.+++ ..+++++.||.|++||+.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         193 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS-SEEEEECTTSEEEEEETT
T ss_pred             ceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc-ceeeeeeccccccccccc
Confidence            7878888889999999999999999999999999999999999999999999999999974 578899999999999998


Q ss_pred             CCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCC
Q 010296          334 EESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNP  413 (513)
Q Consensus       334 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  413 (513)
                      +........+........+++++.+++++.||.|+|||+++++++....                               
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~-------------------------------  320 (355)
T d1nexb2         272 DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI-------------------------------  320 (355)
T ss_dssp             TCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCT-------------------------------
T ss_pred             ccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEe-------------------------------
Confidence            8766544333333334466778888877889999999999998764332                               


Q ss_pred             CCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          414 GSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       414 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                           ..|...|++++|+|+ .++++++.||.++||-+
T Consensus       321 -----~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         321 -----LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             -----TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             -----cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence                 344556999999987 57888999998777654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.4e-29  Score=238.10  Aligned_cols=252  Identities=15%  Similarity=0.253  Sum_probs=186.4

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce------eeeccCcCCCeEEEEEe---c----CCCeEEEEeC
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH------IQAFPGHRGPVSCLTFR---Q----GTSELFSGSF  282 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~---~----~~~~l~~~~~  282 (513)
                      ..+|...|+++++++  ++|++++.|++|+|||..+...      ......|...+..+...   +    +..++++++.
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            468999999999874  6999999999999999765432      12222355444433321   1    2345779999


Q ss_pred             CCcEEEEeCCCCceeEEe----------ecccCCeEEEEeeCC------CeEEEEeCCCcEEEEecCCCee---------
Q 010296          283 DRTVKIWNAEDRAYISTL----------FGHQSEVLTIDCLRK------ERVLTVGRDRSMQLWKVPEESR---------  337 (513)
Q Consensus       283 dg~i~iwd~~~~~~~~~~----------~~~~~~v~~~~~~~~------~~~~~~~~d~~i~iwd~~~~~~---------  337 (513)
                      ||.|++|++........+          ..+...+..++|.++      ..+++++.|+.+++|++.....         
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            999999997644321111          124556777887764      2467899999999999843210         


Q ss_pred             ---e-------EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCC
Q 010296          338 ---L-------VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSE  407 (513)
Q Consensus       338 ---~-------~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  407 (513)
                         .       ....+...+.+++|+|++.|++|+.||+|+|||+.+++++..+...+..                    
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l--------------------  227 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSM--------------------  227 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC----------------------
T ss_pred             ccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccccccccccccccc--------------------
Confidence               0       1123445688999999999999999999999999999998888754432                    


Q ss_pred             CCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc---EEEEEeCCCCcceeeeee-----------cCcccEEEEE
Q 010296          408 NGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS---VRLWAIESETKDIQPLYN-----------LPLVGFVNSL  473 (513)
Q Consensus       408 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~---v~vwd~~~~~~~~~~~~~-----------~~~~~~v~~v  473 (513)
                                 ..|..+|++++|+|+|++|++|+.|++   |+|||+.++ ..+..+..           ..|.+.|++|
T Consensus       228 -----------~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~~~~~~~~~gH~~~V~~l  295 (393)
T d1sq9a_         228 -----------INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSL  295 (393)
T ss_dssp             ------------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEE
T ss_pred             -----------ccccceEEEcccccccceeeeecCCCCcceeeecccccc-eeeeeeccccccccceeeeecccCceeee
Confidence                       456777999999999999999998874   999999887 33333221           2478899999


Q ss_pred             EeecCCCEEEEEecCCCcccccccCCCcc
Q 010296          474 AFAKSGQFLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       474 ~~sp~~~~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                      +|+|++++|+++ +.|++|++||+.++..
T Consensus       296 ~fspd~~~l~S~-s~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         296 SFNDSGETLCSA-GWDGKLRFWDVKTKER  323 (393)
T ss_dssp             EECSSSSEEEEE-ETTSEEEEEETTTTEE
T ss_pred             ccCCCCCeeEEE-CCCCEEEEEECCCCCE
Confidence            999999999999 9999999999987743

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-28  Score=228.54  Aligned_cols=274  Identities=21%  Similarity=0.368  Sum_probs=207.1

Q ss_pred             cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccC--------------
Q 010296          142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSH--------------  207 (513)
Q Consensus       142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--------------  207 (513)
                      ++|+....++++++.+|.+.|++++|+|+  +|++|+.|+++++|+....................              
T Consensus        40 ~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  117 (342)
T d2ovrb2          40 KVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA  117 (342)
T ss_dssp             EEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred             EEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccce
Confidence            46778888889999999999999999875  89999999999999988765543322111000000              


Q ss_pred             -----CCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC
Q 010296          208 -----GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF  282 (513)
Q Consensus       208 -----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  282 (513)
                           ....................+.+....+++++.++.|++|++.....+..+.+|...+..+.  +++.+|++++.
T Consensus       118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~  195 (342)
T d2ovrb2         118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSL  195 (342)
T ss_dssp             EEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEET
T ss_pred             eEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeC
Confidence                 00000000000001111223344567889999999999999999999999998887766655  46789999999


Q ss_pred             CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeE-Ee---cCCCCeeEEEeecCCeE
Q 010296          283 DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLV-FR---APASSLECCCFISNDEF  358 (513)
Q Consensus       283 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~---~~~~~v~~~~~~~~~~~  358 (513)
                      ||.|++||+..++++..+..|...+.++.+++ ..+++++.|+.|++|++....... +.   .+...+.++.++++ .+
T Consensus       196 dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  273 (342)
T d2ovrb2         196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-FV  273 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS-EE
T ss_pred             CCeEEEeecccceeeeEecccccceeEEecCC-CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCC-ee
Confidence            99999999999999999999999999998875 478899999999999998876653 32   23455666666543 68


Q ss_pred             EEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE
Q 010296          359 LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA  438 (513)
Q Consensus       359 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  438 (513)
                      ++|+.||+|+|||+.+++.+..+.....                                ..|...|++++|+|++.+|+
T Consensus       274 ~s~s~Dg~i~iwd~~tg~~i~~~~~~~~--------------------------------~~~~~~v~~v~~s~~~~~la  321 (342)
T d2ovrb2         274 ITSSDDGTVKLWDLKTGEFIRNLVTLES--------------------------------GGSGGVVWRIRASNTKLVCA  321 (342)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEEECTT--------------------------------GGGTCEEEEEEECSSEEEEE
T ss_pred             EEEcCCCEEEEEECCCCCEEEEEecccC--------------------------------CCCCCCEEEEEECCCCCEEE
Confidence            8999999999999999999988764332                                34556799999999999999


Q ss_pred             EecCCCc----EEEEEeCC
Q 010296          439 SGAGNGS----VRLWAIES  453 (513)
Q Consensus       439 ~g~~dg~----v~vwd~~~  453 (513)
                      +|+.||+    |++||+..
T Consensus       322 ~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         322 VGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EECSSSSSCCEEEEEECCC
T ss_pred             EEeCCCCCeeEEEEEeCCC
Confidence            9999985    99999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2e-27  Score=220.38  Aligned_cols=251  Identities=13%  Similarity=0.162  Sum_probs=180.9

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCccee---eeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeC
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI---QAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNA  291 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~  291 (513)
                      ..+|...|++|+|+|++++||+|+.||+|+|||+.++...   ....+|..+|.+++|+|++ .+|++|+.||.|++|++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~   86 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence            4689999999999999999999999999999998765432   2233599999999999875 57889999999999999


Q ss_pred             CCCceeEEeecccCCeE-EEEeeC-CCeEEEEeCCCcEEEEecCCCeee---EEe--c--CCCCeeEEEeecCC-eEEEE
Q 010296          292 EDRAYISTLFGHQSEVL-TIDCLR-KERVLTVGRDRSMQLWKVPEESRL---VFR--A--PASSLECCCFISND-EFLSG  361 (513)
Q Consensus       292 ~~~~~~~~~~~~~~~v~-~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~---~~~--~--~~~~v~~~~~~~~~-~~~~~  361 (513)
                      ...........+..... ...+.+ ...+++++.++.+++||++.....   ...  .  .........+.+.+ .++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (342)
T d1yfqa_          87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG  166 (342)
T ss_dssp             SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeee
Confidence            98877766655544433 333333 457889999999999998653322   111  1  12233445555555 58899


Q ss_pred             eCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEE-EecCCCEEEEe
Q 010296          362 SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVT-VCGGSDLAASG  440 (513)
Q Consensus       362 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~~~~l~~g  440 (513)
                      +.|+.|++|++.............                                  .....+.+.. +..++..++++
T Consensus       167 ~~d~~i~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~  212 (342)
T d1yfqa_         167 MNNSQVQWFRLPLCEDDNGTIEES----------------------------------GLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             ESTTEEEEEESSCCTTCCCEEEEC----------------------------------SCSSCEEEEEECSGGGCEEEEE
T ss_pred             cCCCcEEEEecccCcccceeeeec----------------------------------ccccceeeeEeecCCCCEEEee
Confidence            999999999998766443322111                                  1111144444 44567899999


Q ss_pred             cCCCcEEEEEeCCCCcceee------------eeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296          441 AGNGSVRLWAIESETKDIQP------------LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA  501 (513)
Q Consensus       441 ~~dg~v~vwd~~~~~~~~~~------------~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~  501 (513)
                      +.||.+.+|++.........            .....|...|++|+|+|++++||+| +.||.|++||.....
T Consensus       213 s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg-~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA-GSDGIISCWNLQTRK  284 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE-ETTSCEEEEETTTTE
T ss_pred             cCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEE-CCCCEEEEEECCCCc
Confidence            99999999998754221110            0111256679999999999999999 899999999987654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.2e-26  Score=222.74  Aligned_cols=310  Identities=15%  Similarity=0.035  Sum_probs=208.8

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI  251 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~  251 (513)
                      -++++.+.||+|+|||+.+++.+..+                   ..| ..+..++|||||++|++++.|++|++||+.+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l-------------------~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t   92 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVI-------------------DTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWA   92 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEE-------------------ECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEE-------------------eCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccC
Confidence            35577888999999999999988866                   233 4589999999999999999999999999998


Q ss_pred             cceeee-----ccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC--eEEEEeC
Q 010296          252 QEHIQA-----FPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE--RVLTVGR  323 (513)
Q Consensus       252 ~~~~~~-----~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~  323 (513)
                      ++....     ..+|.+.+.+++|+|+|++|+ ++..++.+.+||..++.++..+..+...+..+.+.+++  ..++.+.
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  172 (426)
T d1hzua2          93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  172 (426)
T ss_dssp             SSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             CceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECC
Confidence            875332     235666677888899999876 45579999999999999888777665555444444433  2223333


Q ss_pred             CC-----------cEEEEecCCCe--eeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296          324 DR-----------SMQLWKVPEES--RLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLL  388 (513)
Q Consensus       324 d~-----------~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  388 (513)
                      ++           .+.+++.....  ......+...+..+.++|+++  +++...+..+.+++..+++.+..+.......
T Consensus       173 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (426)
T d1hzua2         173 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH  252 (426)
T ss_dssp             SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCC
T ss_pred             CCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccc
Confidence            43           34444443332  223445667788899999986  3355677789999999998887776443221


Q ss_pred             cCCC-Cc------------ccCcCccccccCCCCCCCCCC----cCCCCCcceEEEEEEecCCCEEEE-------ecCCC
Q 010296          389 DGLK-NF------------EQDEGKISNGHSENGNLNPGS----YHSSSAYSWVSSVTVCGGSDLAAS-------GAGNG  444 (513)
Q Consensus       389 ~~~~-~~------------~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~-------g~~dg  444 (513)
                      .... .+            ....+.+.........+....    .....|...+..++|+|++++|++       ++.++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~  332 (426)
T d1hzua2         253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ  332 (426)
T ss_dssp             CSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHT
T ss_pred             ccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCC
Confidence            1110 00            011122222222211111111    112456677999999999999994       55688


Q ss_pred             cEEEEEeCCCCcceeeee------ecCcccEEEEEEeecCCCEEEEEe----cCCCcccccccCCCc
Q 010296          445 SVRLWAIESETKDIQPLY------NLPLVGFVNSLAFAKSGQFLIAGV----GQEPRLGRWGHLPAA  501 (513)
Q Consensus       445 ~v~vwd~~~~~~~~~~~~------~~~~~~~v~~v~~sp~~~~l~~~~----~~dg~v~~W~~~~~~  501 (513)
                      +|+|||+.++......+.      ...+...|.+++|||||++|++++    +.+|.|+|||..+..
T Consensus       333 tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         333 SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             CEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             EEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence            999999998743322211      112456799999999999876542    467889999987765

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-25  Score=201.80  Aligned_cols=232  Identities=23%  Similarity=0.444  Sum_probs=183.1

Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296          216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA  295 (513)
Q Consensus       216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  295 (513)
                      ...|...|+|++|  ++++||+|+.||+|+|||+.+++++.++.+|...|++++|  ++++|++|+.|+.|++|++..+.
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            3567888998765  7899999999999999999999999999999999999887  56899999999999999999988


Q ss_pred             eeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee----EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEe
Q 010296          296 YISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL----VFRAPASSLECCCFISNDEFLSGSDDGSIELWS  371 (513)
Q Consensus       296 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd  371 (513)
                      .......+..... ......+.++++..++.+.+|++......    ....+...+.++.+.+. .+++++.|+.|++||
T Consensus        87 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~d~~i~~~d  164 (293)
T d1p22a2          87 MLNTLIHHCEAVL-HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWN  164 (293)
T ss_dssp             EEEEECCCCSCEE-EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEE
T ss_pred             ccccccccccccc-cccccccceeecccccceeEeeccccccccccccccccccccccceeccc-ccccccCCCceeeec
Confidence            7776654444333 33444668889999999999999876532    44566667776666543 577889999999999


Q ss_pred             cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      +.+++++..+.....                                     .+..+.++  +.+|++++.||.|++||+
T Consensus       165 ~~~~~~~~~~~~~~~-------------------------------------~v~~~~~~--~~~l~~~~~dg~i~i~d~  205 (293)
T d1p22a2         165 TSTCEFVRTLNGHKR-------------------------------------GIACLQYR--DRLVVSGSSDNTIRLWDI  205 (293)
T ss_dssp             TTTCCEEEEEECCSS-------------------------------------CEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             CCCCcEEEEEccccc-------------------------------------ccccccCC--CCeEEEecCCCEEEEEec
Confidence            999998888754322                                     26666665  468999999999999999


Q ss_pred             CCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          452 ESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      .+. ..+.....  +...|..  +++++.+|+++ +.||.|++|++.
T Consensus       206 ~~~-~~~~~~~~--~~~~v~~--~~~~~~~l~sg-~~dg~i~iwd~~  246 (293)
T d1p22a2         206 ECG-ACLRVLEG--HEELVRC--IRFDNKRIVSG-AYDGKIKVWDLV  246 (293)
T ss_dssp             TTC-CEEEEECC--CSSCEEE--EECCSSEEEEE-ETTSCEEEEEHH
T ss_pred             ccc-eeeeeecc--cceeeee--ccccceEEEEE-cCCCEEEEEECC
Confidence            887 33333322  4555654  66788899998 899999999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.6e-27  Score=214.84  Aligned_cols=228  Identities=15%  Similarity=0.167  Sum_probs=178.8

Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR  294 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  294 (513)
                      .+.+|..+|++|+|+|    |++|+.||+|++||+.++.     ..|...|.++.|+++ ..+++++.|++|++|++...
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~   77 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKH   77 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEE
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCC-CeEEEEeecccccccccccc
Confidence            4579999999999997    9999999999999987653     579999999999876 56889999999999997543


Q ss_pred             ceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-eEEEEeCC-CCEEEEec
Q 010296          295 AYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND-EFLSGSDD-GSIELWSL  372 (513)
Q Consensus       295 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d-g~i~iwd~  372 (513)
                      +       ....+..+.+.+++.+++.+.++.+.+|+...............+.  ++++++ .+++++.+ +.|++|++
T Consensus        78 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~  148 (287)
T d1pgua2          78 E-------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS--AVSLSQNYVAVGLEEGNTIQVFKL  148 (287)
T ss_dssp             E-------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE--EEEECSSEEEEEETTTSCEEEEET
T ss_pred             c-------cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceee--eeeccCcceeeeccccceeeeeec
Confidence            2       3445778889999999988889999999998887765555544444  445554 46666665 57999998


Q ss_pred             CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296          373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE  452 (513)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~  452 (513)
                      ...+....+..                                    .+...+++++|+|++.+|++|+.||.|++||+.
T Consensus       149 ~~~~~~~~~~~------------------------------------~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~  192 (287)
T d1pgua2         149 SDLEVSFDLKT------------------------------------PLRAKPSYISISPSETYIAAGDVMGKILLYDLQ  192 (287)
T ss_dssp             TEEEEEEECSS------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccceeeeeee------------------------------------ccCCceeEEEeccCccccccccccccccceeec
Confidence            77665555432                                    233449999999999999999999999999998


Q ss_pred             CCCcceeeeeecCcccEEEEEEeecC----------CCEEEEEecCCCcccccccCCC
Q 010296          453 SETKDIQPLYNLPLVGFVNSLAFAKS----------GQFLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~v~~sp~----------~~~l~~~~~~dg~v~~W~~~~~  500 (513)
                      ++.....  ....|..+|++++|+|.          +.+|+++ +.|++|++|++...
T Consensus       193 ~~~~~~~--~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg-s~D~~i~iw~~~~~  247 (287)
T d1pgua2         193 SREVKTS--RWAFRTSKINAISWKPAEKGANEEEIEEDLVATG-SLDTNIFIYSVKRP  247 (287)
T ss_dssp             TTEEEEC--CSCCCSSCEEEEEECCCC------CCSCCEEEEE-ETTSCEEEEESSCT
T ss_pred             ccccccc--cccccccccceeeecccccccccccCCCCeeEee-cCCCeEEEEECCCC
Confidence            8732221  22347889999999875          4578888 89999999998654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=3.2e-25  Score=202.11  Aligned_cols=264  Identities=13%  Similarity=0.109  Sum_probs=206.9

Q ss_pred             EEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCcc
Q 010296          175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA-SGGLDRHIHLWDTRIQE  253 (513)
Q Consensus       175 ~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~vwd~~~~~  253 (513)
                      ++++.+++|.|||+.+++.+..+                    .....+..++|+|+|++|+ +++.++.|++||+.+++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i--------------------~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~   65 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATI--------------------PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN   65 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEE--------------------ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEECCCCEEEEEECCCCeEEEEE--------------------ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence            35678999999999999888765                    2234578999999999875 66678999999999999


Q ss_pred             eeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE--EEeCCCcEEEE
Q 010296          254 HIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL--TVGRDRSMQLW  330 (513)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~d~~i~iw  330 (513)
                      .+..+..+. .+..+.|++++.+++ ++..++.+.+|+..+++.+..+. +...+.++.++|++..+  ++..++.+.+|
T Consensus        66 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~  143 (301)
T d1l0qa2          66 VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVI  143 (301)
T ss_dssp             EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eeeeeeccc-cccccccccccccccccccccceeeecccccceeeeecc-ccccceEEEeecCCCeeeeeeccccceeee
Confidence            999988665 568999999998766 55667899999999998888776 45567889999988543  55568889999


Q ss_pred             ecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCC
Q 010296          331 KVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSEN  408 (513)
Q Consensus       331 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  408 (513)
                      +..+............+..+.+++++. +++++ ..+.+.+|+....+....+....                       
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  200 (301)
T d1l0qa2         144 NTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-----------------------  200 (301)
T ss_dssp             ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-----------------------
T ss_pred             eccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccC-----------------------
Confidence            999998887777777888999999885 44444 55677788877776666554321                       


Q ss_pred             CCCCCCCcCCCCCcceEEEEEEecCCCEEEEec---CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE
Q 010296          409 GNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA---GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       409 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~---~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~  485 (513)
                                     .+..++|++++..+++++   .++.|++||+.++ +.+   ..+++...+.+++|+|||++|+++
T Consensus       201 ---------------~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-~~~---~~~~~~~~~~~va~spdg~~l~va  261 (301)
T d1l0qa2         201 ---------------APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KIT---ARIPVGPDPAGIAVTPDGKKVYVA  261 (301)
T ss_dssp             ---------------EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEE---EEEECCSSEEEEEECTTSSEEEEE
T ss_pred             ---------------CcceeeccccccccccccccceeeeeeeeecCCC-eEE---EEEcCCCCEEEEEEeCCCCEEEEE
Confidence                           277899999999877654   4468999999887 322   333345568999999999998766


Q ss_pred             ecCCCcccccccCCCcc
Q 010296          486 VGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       486 ~~~dg~v~~W~~~~~~~  502 (513)
                      ++.+++|++||..++..
T Consensus       262 ~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         262 LSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             ETTTTEEEEEETTTTEE
T ss_pred             ECCCCeEEEEECCCCeE
Confidence            68899999999877643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=3.4e-26  Score=214.26  Aligned_cols=237  Identities=10%  Similarity=0.089  Sum_probs=180.4

Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCC--ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296          157 KHRQSVTAVALSEDDSKGFSASKD--GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY  234 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  234 (513)
                      +|...|++++|+|||++|++++.+  ..|++||+.++....                    +..|...|.+++|+|++++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~   99 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK--------------------FEENLGNVFAMGVDRNGKF   99 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE--------------------CCCCCCSEEEEEECTTSSE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE--------------------eeCCCceEEeeeecccccc
Confidence            699999999999999999977655  379999999877654                    3578899999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe----------CCCcEEEEeCCCCceeEEeeccc
Q 010296          235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS----------FDRTVKIWNAEDRAYISTLFGHQ  304 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~  304 (513)
                      |++++.++.+++|++.+++....+..|...+.+++|+|+|++|+.+.          .++.+++|++.+++.... ..+.
T Consensus       100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~  178 (360)
T d1k32a3         100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTEN  178 (360)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSS
T ss_pred             cceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee-cccc
Confidence            99999999999999999999999999999999999999999998643          345699999998766544 4477


Q ss_pred             CCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeee--------EEecCCCCe----------------------------
Q 010296          305 SEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL--------VFRAPASSL----------------------------  347 (513)
Q Consensus       305 ~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~--------~~~~~~~~v----------------------------  347 (513)
                      ..+..+.|+|+++ |++++.++.+.+|+.......        ....+...+                            
T Consensus       179 ~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  258 (360)
T d1k32a3         179 SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP  258 (360)
T ss_dssp             SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEE
T ss_pred             cccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceee
Confidence            7889999999985 558889999999986543211        111111111                            


Q ss_pred             --------eEEEeecCCe--------------EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296          348 --------ECCCFISNDE--------------FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH  405 (513)
Q Consensus       348 --------~~~~~~~~~~--------------~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  405 (513)
                              ..+...+++.              +++++.++.|++||+.+++...                          
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--------------------------  312 (360)
T d1k32a3         259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE--------------------------  312 (360)
T ss_dssp             CSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE--------------------------
T ss_pred             cccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE--------------------------
Confidence                    1122111111              2233445566666666554322                          


Q ss_pred             CCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC
Q 010296          406 SENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET  455 (513)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~  455 (513)
                                     +...|.+++|||||++|++++.||.|++||+..+.
T Consensus       313 ---------------~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         313 ---------------VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             ---------------EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred             ---------------ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence                           12338999999999999999999999999998873

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=3.8e-26  Score=218.62  Aligned_cols=302  Identities=12%  Similarity=-0.001  Sum_probs=202.4

Q ss_pred             CCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010296          168 SEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLW  247 (513)
Q Consensus       168 s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw  247 (513)
                      +++.-++++.+.+|+|.|||..+++.+..+                   ..+ ..+..++|||||++|++++.|++|++|
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~-------------------~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~   88 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVL-------------------DTG-YAVHISRLSASGRYLFVIGRDGKVNMI   88 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEE-------------------ECS-SCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEE-------------------eCC-CCeeEEEECCCCCEEEEEcCCCCEEEE
Confidence            334444678899999999999999998866                   223 359999999999999999999999999


Q ss_pred             eCCCccee--ee---ccCcCCCeEEEEEecCCCeE-EEEeCCCcEEEEeCCCCceeEEeecc-----------cCCeEEE
Q 010296          248 DTRIQEHI--QA---FPGHRGPVSCLTFRQGTSEL-FSGSFDRTVKIWNAEDRAYISTLFGH-----------QSEVLTI  310 (513)
Q Consensus       248 d~~~~~~~--~~---~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~  310 (513)
                      |+.+++..  ..   ...|.+.+.+..|+|||++| ++++.++.|++||..+++++..+..+           ......+
T Consensus        89 d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (432)
T d1qksa2          89 DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI  168 (432)
T ss_dssp             ETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred             EeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEE
Confidence            99887632  22   33466667777888999986 57888999999999999988776543           3455678


Q ss_pred             EeeCCCe-E-EEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EE-EEeCCCCEEEEecCCCCeeEEeecC
Q 010296          311 DCLRKER-V-LTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FL-SGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       311 ~~~~~~~-~-~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                      .+++++. + ++...++.|.+|+..+....  ........+..++|+|+|+ ++ ++..++.+.+++..+++.+..+...
T Consensus       169 ~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g  248 (432)
T d1qksa2         169 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG  248 (432)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             EECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccC
Confidence            8888874 3 35567899999998876543  3345566788999999996 44 4455678999999998887776543


Q ss_pred             CCcccCCCC----cc----------cCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe-------------------
Q 010296          385 HPLLDGLKN----FE----------QDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC-------------------  431 (513)
Q Consensus       385 ~~~~~~~~~----~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-------------------  431 (513)
                      .........    ..          .....+..+.......       ..+...+....++                   
T Consensus       249 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~-------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~  321 (432)
T d1qksa2         249 GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH-------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYV  321 (432)
T ss_dssp             SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC-------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred             ccccccCcccceecCCCCceecccccCCceEEecccccccc-------cccccEEEEEEEcCCCCeEEEEecCCccceee
Confidence            321110000    00          0011111111110000       1111122222333                   


Q ss_pred             ----------------cCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEec----CCCc
Q 010296          432 ----------------GGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVG----QEPR  491 (513)
Q Consensus       432 ----------------~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~----~dg~  491 (513)
                                      |+++.|++++.|+.+++|++.+.    ..+.  .|...|.+++|||||++|++++.    .+|.
T Consensus       322 ~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~----~~l~--~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~  395 (432)
T d1qksa2         322 DATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW----AGIT--EGQPRVVQGEFNKDGTEVWFSVWNGKDQESA  395 (432)
T ss_dssp             ECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH----HTCC--SSCCEEEEEEECTTSSEEEEEEECCTTSCCE
T ss_pred             cccCCCCCCeeeEEEEEechhhcccccCCceEecccccc----cccC--CCCCcEEEeEECCCCCEEEEEEecCCCCCCc
Confidence                            66666666666666666665433    1122  25667999999999998876632    4688


Q ss_pred             ccccccCCCcc
Q 010296          492 LGRWGHLPAAR  502 (513)
Q Consensus       492 v~~W~~~~~~~  502 (513)
                      |.|||..+...
T Consensus       396 i~i~D~~T~k~  406 (432)
T d1qksa2         396 LVVVDDKTLEL  406 (432)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCceE
Confidence            99998777643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=1.2e-24  Score=201.47  Aligned_cols=271  Identities=11%  Similarity=0.027  Sum_probs=196.1

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL-ASGGLDRHIHLWDTR  250 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~  250 (513)
                      .||++++.|++|.|||+.+++.+..+                 ....+...+.+++|+|||++| ++++.++.|.+||+.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-----------------~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~   64 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-----------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-----------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE-----------------ECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECC
Confidence            58999999999999999999887765                 122344557789999999987 466788999999999


Q ss_pred             CcceeeeccCcC-----CCeEEEEEecCCCeEEEEe------------CCCcEEEEeCCCCceeEEeecccCCeEEEEee
Q 010296          251 IQEHIQAFPGHR-----GPVSCLTFRQGTSELFSGS------------FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL  313 (513)
Q Consensus       251 ~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  313 (513)
                      +++.+..+..+.     ..+..++|+|++++++++.            .+..+.+||..++..+..+. +...+..++|+
T Consensus        65 t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s  143 (337)
T d1pbyb_          65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWA  143 (337)
T ss_dssp             TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEEC
T ss_pred             CCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEc
Confidence            999988776543     3455789999999998775            46789999999998888776 45568889999


Q ss_pred             CCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-------------------------EEEEeCCCCEE
Q 010296          314 RKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-------------------------FLSGSDDGSIE  368 (513)
Q Consensus       314 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------------~~~~~~dg~i~  368 (513)
                      |++.++.++ ++.+.+||..+.................+.+++.                         +..+..++.+.
T Consensus       144 ~dg~~l~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (337)
T d1pbyb_         144 RDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL  222 (337)
T ss_dssp             TTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred             CCCCEEEEE-cCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEE
Confidence            998655433 2457889998877664332222111112222211                         11122344577


Q ss_pred             EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEE
Q 010296          369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRL  448 (513)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~v  448 (513)
                      +|+..++.........                                    +...+..+.++|++.+++++  ++.|++
T Consensus       223 ~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~--~~~i~v  264 (337)
T d1pbyb_         223 TMDLETGEMAMREVRI------------------------------------MDVFYFSTAVNPAKTRAFGA--YNVLES  264 (337)
T ss_dssp             EEETTTCCEEEEEEEE------------------------------------CSSCEEEEEECTTSSEEEEE--ESEEEE
T ss_pred             EEEcCCCcEEEEEecC------------------------------------CCcceEEEEecccceEEEEc--cccEEE
Confidence            7777777655443221                                    22237888999999998876  478999


Q ss_pred             EEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccc
Q 010296          449 WAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNG  504 (513)
Q Consensus       449 wd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~  504 (513)
                      ||+.++ +.+   ....+...+.+++|+|||++|+++ +.++.|++||..+.+..+
T Consensus       265 ~d~~~~-~~~---~~~~~~~~~~~~~~s~dG~~l~v~-~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         265 FDLEKN-ASI---KRVPLPHSYYSVNVSTDGSTVWLG-GALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             EETTTT-EEE---EEEECSSCCCEEEECTTSCEEEEE-SBSSEEEEEETTTCCEEE
T ss_pred             EECCCC-cEE---EEEcCCCCEEEEEECCCCCEEEEE-eCCCcEEEEECCCCcEEE
Confidence            999987 333   333356678999999999999998 899999999998765443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=1.1e-24  Score=202.50  Aligned_cols=277  Identities=11%  Similarity=-0.045  Sum_probs=197.6

Q ss_pred             EEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-EEeCCCc
Q 010296          165 VALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA-SGGLDRH  243 (513)
Q Consensus       165 ~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~  243 (513)
                      ++|++++++|++++.+++|.|||+.+++.+.++                  ...|...+.+++|+|||++|+ ++..++.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~------------------~~~~~~~p~~l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSC------------------VMPDKFGPGTAMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEE------------------ECSSCCSSCEEEECTTSSEEEEEETTTTE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEE------------------EcCCCCCcceEEECCCCCEEEEEECCCCc
Confidence            578999999999999999999999999887754                  123455678999999999875 5567899


Q ss_pred             EEEEeCCCcceeeeccCcC------CCeEEEEEecCCCeEEEEe------------CCCcEEEEeCCCCceeEEeec--c
Q 010296          244 IHLWDTRIQEHIQAFPGHR------GPVSCLTFRQGTSELFSGS------------FDRTVKIWNAEDRAYISTLFG--H  303 (513)
Q Consensus       244 i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~--~  303 (513)
                      |++||+.+++.+..+....      ..+..++|+|+|+++++++            .++.+.+|+..+++....+..  .
T Consensus        64 v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  143 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM  143 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC
T ss_pred             EEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec
Confidence            9999999998887665322      3456799999999988765            467899999888766544432  2


Q ss_pred             cCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe--------------------------
Q 010296          304 QSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--------------------------  357 (513)
Q Consensus       304 ~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------  357 (513)
                      ...+..+.+.+++.+++.+  +.+.+|++.+...............+.++|++.                          
T Consensus       144 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (346)
T d1jmxb_         144 PRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ  221 (346)
T ss_dssp             CSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred             cCceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCce
Confidence            3455667777788777654  568899998877664443333333344444432                          


Q ss_pred             -EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCE
Q 010296          358 -FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDL  436 (513)
Q Consensus       358 -~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  436 (513)
                       ++++...+.+.+|++.++.........                                    +...+..+.+++++.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~  265 (346)
T d1jmxb_         222 DPATADLLYGYLSVDLKTGKTHTQEFAD------------------------------------LTELYFTGLRSPKDPN  265 (346)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEEEEEE------------------------------------CSSCEEEEEECSSCTT
T ss_pred             eEeeccCCceEEEEECCCCceEEEEeec------------------------------------ccceeEEEEEeCCCCE
Confidence             122233445566666665544433221                                    2233888899998888


Q ss_pred             EEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296          437 AASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARN  503 (513)
Q Consensus       437 l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~  503 (513)
                      ++.+.. +.|++||+.++ +.+   ....+...+.+++|+|||++|+++ +.|+.|++||..+.+..
T Consensus       266 ~~~~~~-~~v~v~d~~~~-~~~---~~~~~~~~~~~va~s~DG~~l~v~-~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         266 QIYGVL-NRLAKYDLKQR-KLI---KAANLDHTYYCVAFDKKGDKLYLG-GTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             EEEEEE-SEEEEEETTTT-EEE---EEEECSSCCCEEEECSSSSCEEEE-SBSSEEEEEETTTTEEE
T ss_pred             EEEecC-CeEEEEECCCC-cEE---EEEcCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECccCCEE
Confidence            887764 57999999887 333   333345568999999999999999 78999999999876543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.2e-23  Score=201.49  Aligned_cols=290  Identities=11%  Similarity=0.029  Sum_probs=193.3

Q ss_pred             cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      ++|+....+.+.++..|. .+..++|||||++|++++.|++|++||+.+++.....     .         .....+|..
T Consensus        45 ~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~-----~---------i~~~~~~~~  109 (426)
T d1hzua2          45 ALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA-----E---------IKIGIEARS  109 (426)
T ss_dssp             EEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE-----E---------EECCSEEEE
T ss_pred             EEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE-----E---------EeCCCCCcc
Confidence            367888888888888774 5999999999999999999999999999988754321     0         001235677


Q ss_pred             cEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcceeeeccCcCCCe-----------EEEEEecCCCeEEEEeC-CCcEEE
Q 010296          222 HILALAVSSDGRYLASG-GLDRHIHLWDTRIQEHIQAFPGHRGPV-----------SCLTFRQGTSELFSGSF-DRTVKI  288 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~l~~~~~-dg~i~i  288 (513)
                      .+.+++|+|||++|+++ ..++.+.+||..++.++..+..|...+           ..+.+++++..++.... .+.+.+
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            78888999999987554 578999999999998887776555444           44555555555443332 345555


Q ss_pred             EeCCCCcee-EEeecccCCeEEEEeeCCCeEE-EEe-CCCcEEEEecCCCeee---------------------------
Q 010296          289 WNAEDRAYI-STLFGHQSEVLTIDCLRKERVL-TVG-RDRSMQLWKVPEESRL---------------------------  338 (513)
Q Consensus       289 wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~-~~~-~d~~i~iwd~~~~~~~---------------------------  338 (513)
                      ++......+ .....+...+..+.++|+++++ ++. ....+.+++..+....                           
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (426)
T d1hzua2         190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS  269 (426)
T ss_dssp             EECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred             EEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEE
Confidence            555444322 2233466778888888877543 333 4555666655433221                           


Q ss_pred             ----------------------------EEecCCCCeeEEEeecCCeEEE--------EeCCCCEEEEecCCCCeeEEee
Q 010296          339 ----------------------------VFRAPASSLECCCFISNDEFLS--------GSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       339 ----------------------------~~~~~~~~v~~~~~~~~~~~~~--------~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                                                  .+..|...+..++|+|++..+.        ++.+++|+|||+.+++...++.
T Consensus       270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~  349 (426)
T d1hzua2         270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL  349 (426)
T ss_dssp             EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred             eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEe
Confidence                                        2334556678899999997443        3457899999999988776653


Q ss_pred             cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe-----cCCCcEEEEEeCCCCcc
Q 010296          383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG-----AGNGSVRLWAIESETKD  457 (513)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g-----~~dg~v~vwd~~~~~~~  457 (513)
                      ......                            ....+...|..++|||||++|+.+     +.+|.|+|||..+. +.
T Consensus       350 ~~~~~~----------------------------~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~-k~  400 (426)
T d1hzua2         350 PIAEWA----------------------------DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL-KL  400 (426)
T ss_dssp             CHHHHH----------------------------CCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT-EE
T ss_pred             ccchhc----------------------------ccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC-eE
Confidence            210000                            002233448999999999977432     46789999999988 44


Q ss_pred             eeeeeecCcccEEEEEEeecCCCEEE
Q 010296          458 IQPLYNLPLVGFVNSLAFAKSGQFLI  483 (513)
Q Consensus       458 ~~~~~~~~~~~~v~~v~~sp~~~~l~  483 (513)
                      ...+...+        .++|+|+|.+
T Consensus       401 ~~~i~~~~--------~~tp~Gk~~~  418 (426)
T d1hzua2         401 KAVVKDPR--------LITPTGKFNV  418 (426)
T ss_dssp             EEEECCTT--------CCSEEEEEEH
T ss_pred             EEEECCCC--------ccCCCceEeE
Confidence            44444322        4467777754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=1.4e-21  Score=177.69  Aligned_cols=251  Identities=11%  Similarity=0.056  Sum_probs=194.0

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      +++....+.++++.. ...+..++|+|+|++|+ +++.++.|++||+.+++.+..+                   ..+ .
T Consensus        16 v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~-------------------~~~-~   74 (301)
T d1l0qa2          16 VIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-------------------PAG-S   74 (301)
T ss_dssp             EEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-------------------ECS-S
T ss_pred             EEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee-------------------ecc-c
Confidence            455666666666543 35678999999999885 6668899999999999887654                   122 3


Q ss_pred             cEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEE
Q 010296          222 HILALAVSSDGRYLAS-GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYIST  299 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~  299 (513)
                      .+..++|++++.++++ +..++.+.+|+..+++....+.. ...+.++.|+|++..++ ++..++.+.+|+..+...+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccccccccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeee
Confidence            4788999999986655 55678899999999998888874 45678999999999876 555688899999999988887


Q ss_pred             eecccCCeEEEEeeCCCe-EEEEeC-CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEE---eCCCCEEEEecC
Q 010296          300 LFGHQSEVLTIDCLRKER-VLTVGR-DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSG---SDDGSIELWSLL  373 (513)
Q Consensus       300 ~~~~~~~v~~~~~~~~~~-~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~---~~dg~i~iwd~~  373 (513)
                      +. +...+..+.+++++. +++++. .+.+.+|+...............+..+++++++. ++++   ..++.|++||+.
T Consensus       154 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~  232 (301)
T d1l0qa2         154 VS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (301)
T ss_dssp             EE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             cc-cCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecC
Confidence            76 445678899999764 445554 5677788887777766666667778889999885 3333   345789999999


Q ss_pred             CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE-EEecCCCcEEEEEeC
Q 010296          374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA-ASGAGNGSVRLWAIE  452 (513)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~g~~dg~v~vwd~~  452 (513)
                      +++.+..+.....                                      +.+++|+|+|++| ++++.++.|++||+.
T Consensus       233 t~~~~~~~~~~~~--------------------------------------~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         233 TNKITARIPVGPD--------------------------------------PAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             TTEEEEEEECCSS--------------------------------------EEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEEcCCCC--------------------------------------EEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            9998887754221                                      8899999999976 577889999999999


Q ss_pred             CC
Q 010296          453 SE  454 (513)
Q Consensus       453 ~~  454 (513)
                      ++
T Consensus       275 t~  276 (301)
T d1l0qa2         275 TN  276 (301)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.89  E-value=3e-20  Score=174.43  Aligned_cols=296  Identities=9%  Similarity=-0.088  Sum_probs=203.1

Q ss_pred             hhccCCCeEEEEECCCCCeEEEEe-----CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSAS-----KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ...|.+++.+++++|+|+.+++..     ..+.|.+||..+++.+..+                   ..+.  ...++|+
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-------------------~~~~--~~~~a~S   74 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-------------------NGGF--LPNPVAA   74 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE-------------------eCCC--CccEEEc
Confidence            346889999999999999987642     3467999999999887754                   1222  2368999


Q ss_pred             CCCCEEEEEe----------CCCcEEEEeCCCcceeeeccCcCCCe-------EEEEEecCCCeEEEEe--CCCcEEEEe
Q 010296          230 SDGRYLASGG----------LDRHIHLWDTRIQEHIQAFPGHRGPV-------SCLTFRQGTSELFSGS--FDRTVKIWN  290 (513)
Q Consensus       230 ~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~~--~dg~i~iwd  290 (513)
                      |||++|++++          .++.|.+||+.+++.+..+..+....       ..+.|+++++.++...  .++.+.+|+
T Consensus        75 pDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~  154 (373)
T d2madh_          75 HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV  154 (373)
T ss_pred             CCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEee
Confidence            9999998875          35789999999999988877655443       4578889988776554  456888999


Q ss_pred             CCCCceeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeEEec-------CCCCeeEEEeecCCeEEEE
Q 010296          291 AEDRAYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFRA-------PASSLECCCFISNDEFLSG  361 (513)
Q Consensus       291 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~  361 (513)
                      ....+.....    ....++.++|++  .+++.+.++.+.+|+...........       .......+.+.+++.++..
T Consensus       155 ~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (373)
T d2madh_         155 QGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP  230 (373)
T ss_pred             ccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEe
Confidence            8877654433    345678888876  34578899999999998776553211       1122334556667778888


Q ss_pred             eCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-------
Q 010296          362 SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-------  434 (513)
Q Consensus       362 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-------  434 (513)
                      +.++.+.+|+...................          ...               .........+++++++       
T Consensus       231 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~---------------~~~~~~~~~~~~~~d~~~~~~~~  285 (373)
T d2madh_         231 VYSGKILQADISAAGATNKAPIDALSGGR----------KAD---------------TWRPGGWQQVAYLKSSDGIYLLT  285 (373)
T ss_pred             cCCceEEEEEcCCCeEEEEEeeccccCcE----------Eee---------------eeccCcceeeEEecCCCeEEEec
Confidence            89999999999887654433221110000          000               0000112334444444       


Q ss_pred             ---CEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCE-EEEEecCCCcccccccCCCcccc
Q 010296          435 ---DLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQF-LIAGVGQEPRLGRWGHLPAARNG  504 (513)
Q Consensus       435 ---~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-l~~~~~~dg~v~~W~~~~~~~~~  504 (513)
                         ..+++...++.|.+||+.++ +   .+..+.+...+.+++|+|||+. |+++.+.|+.|++||..++....
T Consensus       286 ~~~~~~~~~~~~~~v~~~d~~t~-~---~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~  355 (373)
T d2madh_         286 SEQSAWKLHAAAKEVTSVTGLVG-Q---TSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             CCCceEEeecCCCeEEEEECCCC-c---EEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence               44555667788999999888 2   2333446677899999999985 34455899999999998876543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.2e-20  Score=174.10  Aligned_cols=278  Identities=13%  Similarity=0.223  Sum_probs=191.0

Q ss_pred             eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 010296          173 KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG-LDRHIHLWDTRI  251 (513)
Q Consensus       173 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~  251 (513)
                      .+++++.+++|+||++.....+..+                 ....|...+..|+|+|||++|++++ .++.|++|++..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~-----------------~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~   68 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLT-----------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP   68 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEE-----------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEE-----------------EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence            3567789999999999765443322                 1235677899999999999986655 589999999876


Q ss_pred             cceeeecc---CcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCceeE--EeecccCCeEEEEeeCCCeEE-EEe-C
Q 010296          252 QEHIQAFP---GHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRAYIS--TLFGHQSEVLTIDCLRKERVL-TVG-R  323 (513)
Q Consensus       252 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~-~~~-~  323 (513)
                      ......+.   .+...+..++|+|+|++|++++. ++.|.+|+........  ....+...+.++.++|++..+ +++ .
T Consensus        69 ~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~  148 (333)
T d1ri6a_          69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK  148 (333)
T ss_dssp             TTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG
T ss_pred             CCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc
Confidence            64333222   24455778999999999998875 6789999887665433  334466678889999988544 444 4


Q ss_pred             CCcEEEEecCCCeee-------EEecCCCCeeEEEeecCCeE--EEEeCCCCEEEEecCCCCeeE----EeecCCCcccC
Q 010296          324 DRSMQLWKVPEESRL-------VFRAPASSLECCCFISNDEF--LSGSDDGSIELWSLLRKKPVY----IVKNAHPLLDG  390 (513)
Q Consensus       324 d~~i~iwd~~~~~~~-------~~~~~~~~v~~~~~~~~~~~--~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~  390 (513)
                      +..|.+|+.......       ...........++|++++.+  ++....+...+|+........    .+......   
T Consensus       149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---  225 (333)
T d1ri6a_         149 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN---  225 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT---
T ss_pred             cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecC---
Confidence            667999998765332       12234456678999998863  355566778888765432211    11110000   


Q ss_pred             CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe-cCCCcEEEEEeCCCCcceeeeeecCcccE
Q 010296          391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG-AGNGSVRLWAIESETKDIQPLYNLPLVGF  469 (513)
Q Consensus       391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  469 (513)
                                                  .........+++++++++++.. ..++.+.+|++.............+....
T Consensus       226 ----------------------------~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (333)
T d1ri6a_         226 ----------------------------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ  277 (333)
T ss_dssp             ----------------------------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS
T ss_pred             ----------------------------CCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCC
Confidence                                        1222337788999999876654 56789999999877554444443334556


Q ss_pred             EEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          470 VNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       470 v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                      +.+++|+|||++|++++..++.|++|++.
T Consensus       278 p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         278 PRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             eeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            78899999999999986778999999654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.2e-21  Score=181.05  Aligned_cols=261  Identities=14%  Similarity=0.128  Sum_probs=189.5

Q ss_pred             ccCCCcccchhhhhc--cCCCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC
Q 010296          143 VQKPEATDEFRVLLK--HRQSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ  219 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~--h~~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (513)
                      +|+......+..+..  +...+.+++|+|||++|+ +++.++.|.+||+.+++.+..+....              ...+
T Consensus        15 v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~--------------~~~~   80 (337)
T d1pbyb_          15 VIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST--------------PEER   80 (337)
T ss_dssp             EEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB--------------TTEE
T ss_pred             EEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC--------------Cccc
Confidence            456666666666654  445688999999999885 66789999999999998876552110              1122


Q ss_pred             cccEEEEEEcCCCCEEEEEe------------CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEE
Q 010296          220 SKHILALAVSSDGRYLASGG------------LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVK  287 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  287 (513)
                      ...+..++|+|++++++++.            .++.+.+||..+++.+..+.. ...+.+++|+|+++++++++.  .+.
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~  157 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLH  157 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--Ccc
Confidence            34456799999999998876            357899999999998888874 456889999999999999864  578


Q ss_pred             EEeCCCCceeEEeecccCCeEEEEeeCC-----------Ce--------------EEEEeCCCcEEEEecCCCeee--EE
Q 010296          288 IWNAEDRAYISTLFGHQSEVLTIDCLRK-----------ER--------------VLTVGRDRSMQLWKVPEESRL--VF  340 (513)
Q Consensus       288 iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~--------------~~~~~~d~~i~iwd~~~~~~~--~~  340 (513)
                      +||..+++....+..+... ....+.++           +.              ......++.+.+|++..+...  .+
T Consensus       158 ~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         158 VMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             eeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            8999998877766433221 11111111           11              111122456888998877654  34


Q ss_pred             ecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCC
Q 010296          341 RAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSS  420 (513)
Q Consensus       341 ~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  420 (513)
                      ..+...+..+.+++++.++.+. ++.|++||+.+++.+..+...+.                                  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~~~~----------------------------------  281 (337)
T d1pbyb_         237 RIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHS----------------------------------  281 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSC----------------------------------
T ss_pred             cCCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEcCCCC----------------------------------
Confidence            5566677888888988765443 58999999999999988764332                                  


Q ss_pred             CcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296          421 AYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL  461 (513)
Q Consensus       421 ~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~  461 (513)
                          +.+++|+|+|++|++++.+|.|+|||+.+. +.+..+
T Consensus       282 ----~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~-~~v~~i  317 (337)
T d1pbyb_         282 ----YYSVNVSTDGSTVWLGGALGDLAAYDAETL-EKKGQV  317 (337)
T ss_dssp             ----CCEEEECTTSCEEEEESBSSEEEEEETTTC-CEEEEE
T ss_pred             ----EEEEEECCCCCEEEEEeCCCcEEEEECCCC-cEEEEE
Confidence                789999999999999999999999999987 334333

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.2e-21  Score=187.04  Aligned_cols=303  Identities=9%  Similarity=-0.048  Sum_probs=191.6

Q ss_pred             cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296          142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK  221 (513)
Q Consensus       142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (513)
                      .+|+....+.+..+..|. .+..++|||||++|++++.|++|++||+.+++.....              .......|..
T Consensus        45 ~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~--------------~i~~~~~~~~  109 (432)
T d1qksa2          45 ALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--------------EIKIGSEARS  109 (432)
T ss_dssp             EEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--------------EEECCSEEEE
T ss_pred             EEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE--------------EEecCCCCCC
Confidence            367788888888888774 6999999999999999999999999999887643211              0001234566


Q ss_pred             cEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCcceeeeccC-----------cCCCeEEEEEecCCCeEE-EEeCCCcEEE
Q 010296          222 HILALAVSSDGRYL-ASGGLDRHIHLWDTRIQEHIQAFPG-----------HRGPVSCLTFRQGTSELF-SGSFDRTVKI  288 (513)
Q Consensus       222 ~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~-~~~~dg~i~i  288 (513)
                      .+.+.+|+|||++| ++++.++.|++||..+++++..+..           +......+.++|++..++ +...++.|.+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            67778889999986 6778899999999999998877654           334567789999998765 5666899999


Q ss_pred             EeCCCCceeEEee-cccCCeEEEEeeCCCeE-EEEe-CCCcEEEEecCCCeeeEEec------CCCCeeEEEeecCCeEE
Q 010296          289 WNAEDRAYISTLF-GHQSEVLTIDCLRKERV-LTVG-RDRSMQLWKVPEESRLVFRA------PASSLECCCFISNDEFL  359 (513)
Q Consensus       289 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-~~~~-~d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~  359 (513)
                      |+..+.+...... .+...+..+.|+|++++ ++++ .++.+.+++..+........      +........+...+.+.
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~  269 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW  269 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred             EEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCcee
Confidence            9998877544332 35567889999999864 4444 46788999988776653322      22222333333333333


Q ss_pred             EE--eCCCCEEEEecCCC-------CeeEEeecCCCcccCCCCcc------------------------cCcCccccccC
Q 010296          360 SG--SDDGSIELWSLLRK-------KPVYIVKNAHPLLDGLKNFE------------------------QDEGKISNGHS  406 (513)
Q Consensus       360 ~~--~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~~~~  406 (513)
                      ..  ..++.|.+|.....       +....+........ .....                        ++...+.... 
T Consensus       270 ~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~-~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s-  347 (432)
T d1qksa2         270 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL-FIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG-  347 (432)
T ss_dssp             EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC-CEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS-
T ss_pred             cccccCCceEEecccccccccccccEEEEEEEcCCCCeE-EEEecCCccceeecccCCCCCCeeeEEEEEechhhcccc-
Confidence            22  23667777765442       22223322111000 00000                        0111111000 


Q ss_pred             CCCCCCCCC----cCCCCCcceEEEEEEecCCCEEEEec-----CCCcEEEEEeCCCCcceeeee
Q 010296          407 ENGNLNPGS----YHSSSAYSWVSSVTVCGGSDLAASGA-----GNGSVRLWAIESETKDIQPLY  462 (513)
Q Consensus       407 ~~~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~g~-----~dg~v~vwd~~~~~~~~~~~~  462 (513)
                      ....+....    .....+...+.+++|||||++++.+.     .+|.|.|||..+. +....+.
T Consensus       348 ~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~-k~~~~i~  411 (432)
T d1qksa2         348 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL-ELKHVIK  411 (432)
T ss_dssp             SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT-EEEEEEC
T ss_pred             cCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCc-eEEeEec
Confidence            000000000    00124556789999999999886553     4688999999988 4444443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=2.5e-20  Score=172.67  Aligned_cols=263  Identities=10%  Similarity=0.026  Sum_probs=185.9

Q ss_pred             ccCCCcccchhhhh-ccCCCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCc
Q 010296          143 VQKPEATDEFRVLL-KHRQSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQS  220 (513)
Q Consensus       143 ~~~~~~~~~~~~~~-~h~~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (513)
                      +|+....+.++++. .|...+.+++|+|||++|+ +++.++.|.+||+.+++.+..+....             ....+.
T Consensus        22 v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~-------------~~~~~~   88 (346)
T d1jmxb_          22 VVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS-------------VPGEVG   88 (346)
T ss_dssp             EEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC-------------STTEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc-------------cccccC
Confidence            56777777777775 5677789999999999875 55678999999999998776541110             112233


Q ss_pred             ccEEEEEEcCCCCEEEEEe------------CCCcEEEEeCCCcceeeeccCc--CCCeEEEEEecCCCeEEEEeCCCcE
Q 010296          221 KHILALAVSSDGRYLASGG------------LDRHIHLWDTRIQEHIQAFPGH--RGPVSCLTFRQGTSELFSGSFDRTV  286 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i  286 (513)
                      ..+..++|+|+|++|++++            .++.+.+|+..+++....+..+  ...+..+.+++++..++++   +.+
T Consensus        89 ~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  165 (346)
T d1jmxb_          89 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDI  165 (346)
T ss_dssp             ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSE
T ss_pred             CceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---Ccc
Confidence            4466799999999988765            4678999999888766555433  2345667777777655543   568


Q ss_pred             EEEeCCCCceeEEeecccCCeEEEEeeCCCe---------------------------EEEEeCCCcEEEEecCCCeee-
Q 010296          287 KIWNAEDRAYISTLFGHQSEVLTIDCLRKER---------------------------VLTVGRDRSMQLWKVPEESRL-  338 (513)
Q Consensus       287 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------------~~~~~~d~~i~iwd~~~~~~~-  338 (513)
                      .+|++.+++.+..+..+. .+..+.++|++.                           +.++.....+.+|++.+.... 
T Consensus       166 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (346)
T d1jmxb_         166 YKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT  244 (346)
T ss_dssp             EEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE
T ss_pred             eEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEE
Confidence            999999988877765332 222223333221                           123334566888888877654 


Q ss_pred             -EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcC
Q 010296          339 -VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYH  417 (513)
Q Consensus       339 -~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  417 (513)
                       ....+...+..+.+++++..++....+.|.+||..+++.+..+...+.                               
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------------------------------  293 (346)
T d1jmxb_         245 QEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHT-------------------------------  293 (346)
T ss_dssp             EEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSC-------------------------------
T ss_pred             EEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCCCC-------------------------------
Confidence             344566778888888887644444457899999999998888764432                               


Q ss_pred             CCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296          418 SSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL  461 (513)
Q Consensus       418 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~  461 (513)
                             +.+++|+|||++|++++.||.|+|||+.+. +.+..+
T Consensus       294 -------~~~va~s~DG~~l~v~~~d~~v~v~D~~t~-~~i~~i  329 (346)
T d1jmxb_         294 -------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI  329 (346)
T ss_dssp             -------CCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred             -------EEEEEEcCCCCEEEEEeCCCcEEEEECccC-CEEEEE
Confidence                   889999999999999999999999999987 444433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=2.3e-19  Score=166.99  Aligned_cols=290  Identities=10%  Similarity=0.018  Sum_probs=185.1

Q ss_pred             CeEEEEECCCCCeEEEEe-----CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          161 SVTAVALSEDDSKGFSAS-----KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      ++.-.+.+||++.+++..     .+..|.+||..+++.+..+                   ..+  .+..++|||||++|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-------------------~~g--~~~~~a~SpDg~~l   61 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-------------------DGG--FLPNPVVADDGSFI   61 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-------------------EEC--SSCEEEECTTSSCE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-------------------ECC--CCCceEEcCCCCEE
Confidence            344456789999988653     4668999999999887654                   112  23368999999988


Q ss_pred             EEEe----------CCCcEEEEeCCCcceeeeccCcC-------CCeEEEEEecCCCeEEEEe--CCCcEEEEeCCCCce
Q 010296          236 ASGG----------LDRHIHLWDTRIQEHIQAFPGHR-------GPVSCLTFRQGTSELFSGS--FDRTVKIWNAEDRAY  296 (513)
Q Consensus       236 ~s~~----------~dg~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~  296 (513)
                      ++.+          .++.|++||+.+++.+..+..+.       .....++|+|++++++.++  .+..+.+|+..+++.
T Consensus        62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence            7643          47899999999999887664332       2335689999999888764  467899999999988


Q ss_pred             eEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EE------ecCCCCeeEEEeecCC-eEEEEeCCCCEE
Q 010296          297 ISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VF------RAPASSLECCCFISND-EFLSGSDDGSIE  368 (513)
Q Consensus       297 ~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~------~~~~~~v~~~~~~~~~-~~~~~~~dg~i~  368 (513)
                      +..+..+....  +.......+++.+.|+...++........ ..      ..+...+....+.+.+ .++.++.++.++
T Consensus       142 ~~~~~~~~~~~--~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (355)
T d2bbkh_         142 KRMLDVPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH  219 (355)
T ss_dssp             EEEEECCSEEE--EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEE
T ss_pred             eeEEecCCcce--EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEE
Confidence            87765433211  11122334444455555544443332221 11      1122233444555544 688889999999


Q ss_pred             EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC-----
Q 010296          369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN-----  443 (513)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----  443 (513)
                      +|++..+.............          .....               .........+++++++..++....+     
T Consensus       220 v~~~~~~~~~~~~~~~~~~~----------~~~~~---------------~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~  274 (355)
T d2bbkh_         220 QIDLSSGDAKFLPAVEALTE----------AERAD---------------GWRPGGWQQVAYHRALDRIYLLVDQRDEWR  274 (355)
T ss_dssp             EEECTTSSCEECCCEESSCH----------HHHHT---------------TEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred             EEecCCCcEEEEeccCCccc----------ceEee---------------eeeccceEEEEEeCCCCeEEEEeccCCcee
Confidence            99998876432211000000          00000               0001113457899999888766533     


Q ss_pred             -----CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCC-EEEEEecCCCcccccccCCCcc
Q 010296          444 -----GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       444 -----g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                           ..|.+||+.++ +.+.   .+++...+.+++|+|||+ +|+++++.|+.|++||..++..
T Consensus       275 ~~~~~~~v~v~d~~t~-~~~~---~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         275 HKTASRFVVVLDAKTG-ERLA---KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             TTSCEEEEEEEETTTC-CEEE---EEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             ecCCCCeEEEEeCCCC-cEEE---EecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence                 46999999987 3333   333556789999999998 4555558899999999987753

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.5e-18  Score=159.82  Aligned_cols=259  Identities=7%  Similarity=0.101  Sum_probs=172.8

Q ss_pred             hccCCCeEEEEECCCCCeEEEEe-CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296          156 LKHRQSVTAVALSEDDSKGFSAS-KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY  234 (513)
Q Consensus       156 ~~h~~~V~~~~~s~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  234 (513)
                      ..|.+.|.+|+|+|||++|++++ .|+.|++|++........+.                ....+...+..++|+|+|++
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~----------------~~~~~~~~p~~l~~spDg~~   96 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA----------------AESALPGSLTHISTDHQGQF   96 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE----------------EEEECSSCCSEEEECTTSSE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe----------------eecccCCCceEEEEcCCCCE
Confidence            36889999999999999997655 58999999998665433220                01123345678999999999


Q ss_pred             EEEEeC-CCcEEEEeCCCcceeee--ccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCceeEEe------eccc
Q 010296          235 LASGGL-DRHIHLWDTRIQEHIQA--FPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRAYISTL------FGHQ  304 (513)
Q Consensus       235 l~s~~~-dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~------~~~~  304 (513)
                      |++++. ++.|.+|+.........  ...+...+.++.|+|+++++++++. +..|.+|+..........      ....
T Consensus        97 l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g  176 (333)
T d1ri6a_          97 VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG  176 (333)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             EeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecC
Confidence            998875 67899998766554332  3346677889999999999887764 567999998765432211      2234


Q ss_pred             CCeEEEEeeCCCeEE--EEeCCCcEEEEecCCCeee-----EEe------cCCCCeeEEEeecCCe--EEEEeCCCCEEE
Q 010296          305 SEVLTIDCLRKERVL--TVGRDRSMQLWKVPEESRL-----VFR------APASSLECCCFISNDE--FLSGSDDGSIEL  369 (513)
Q Consensus       305 ~~v~~~~~~~~~~~~--~~~~d~~i~iwd~~~~~~~-----~~~------~~~~~v~~~~~~~~~~--~~~~~~dg~i~i  369 (513)
                      .....+.|++++.++  +....+...+|++......     ...      ........+++++++.  ++++..++.+.+
T Consensus       177 ~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~  256 (333)
T d1ri6a_         177 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV  256 (333)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEE
Confidence            456889999987554  3345667777776433211     111      1223456678899885  456777889999


Q ss_pred             EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCcEEE
Q 010296          370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGSVRL  448 (513)
Q Consensus       370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v~v  448 (513)
                      |++........+.....                                  ....+..++|+|+|++|++++ .++.|++
T Consensus       257 ~~~~~~~~~~~~~~~~~----------------------------------~~~~p~~~a~spDGk~l~va~~~~~~v~v  302 (333)
T d1ri6a_         257 FSVSEDGSVLSKEGFQP----------------------------------TETQPRGFNVDHSGKYLIAAGQKSHHISV  302 (333)
T ss_dssp             EEECTTSCCEEEEEEEE----------------------------------CSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             EEEcCCCCEEEEEEEeC----------------------------------CCCCeeEEEEeCCCCEEEEEECCCCeEEE
Confidence            99876654443322110                                  111267899999999877665 5689999


Q ss_pred             EEeCCCCcceeeeeec
Q 010296          449 WAIESETKDIQPLYNL  464 (513)
Q Consensus       449 wd~~~~~~~~~~~~~~  464 (513)
                      |++...+..+.....+
T Consensus       303 ~~id~~tG~l~~~~~~  318 (333)
T d1ri6a_         303 YEIVGEQGLLHEKGRY  318 (333)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEECCCCcEEEEEec
Confidence            9876543344444433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=2.9e-17  Score=153.78  Aligned_cols=277  Identities=10%  Similarity=-0.004  Sum_probs=187.5

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEe----------CCceEEEEeCCCCccccccCCChhhhccCCCCCC
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSAS----------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP  212 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  212 (513)
                      +++....+.+..+..+..+  .++|+|||++|++++          .++.|.+||+.+++.+..+.......        
T Consensus        51 v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~--------  120 (373)
T d2madh_          51 VLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR--------  120 (373)
T ss_pred             EEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcce--------
Confidence            3445566666666666544  799999999999875          45789999999998776542111000        


Q ss_pred             CCCCCCCcccEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeE-EEEeCCCcEEEE
Q 010296          213 QGRATKQSKHILALAVSSDGRYLASGG--LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSEL-FSGSFDRTVKIW  289 (513)
Q Consensus       213 ~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw  289 (513)
                          ..-......+.|+++++.++...  .++.+.+|+....+.....    ....++.|+|+++.+ ++.+.|+.+.+|
T Consensus       121 ----~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~  192 (373)
T d2madh_         121 ----FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKT  192 (373)
T ss_pred             ----eEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEE
Confidence                00011234578999998776654  4568899998877665443    345788999998765 578889999999


Q ss_pred             eCCCCceeEEeecc------cCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEe---c----------CCCCeeEE
Q 010296          290 NAEDRAYISTLFGH------QSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFR---A----------PASSLECC  350 (513)
Q Consensus       290 d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~---~----------~~~~v~~~  350 (513)
                      +...+........+      ......+.+.+++.++..+.++.+.+|+..........   .          .......+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (373)
T d2madh_         193 DHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV  272 (373)
T ss_pred             EcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceee
Confidence            99988776554322      22234555667778888889999999998776533111   1          11122233


Q ss_pred             EeecCC-----------eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCC
Q 010296          351 CFISND-----------EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSS  419 (513)
Q Consensus       351 ~~~~~~-----------~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  419 (513)
                      ++++++           .+++...++.|.+||..+++.+..+.....                                 
T Consensus       273 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~---------------------------------  319 (373)
T d2madh_         273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD---------------------------------  319 (373)
T ss_pred             EEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCC---------------------------------
Confidence            444433           245566778899999999998887754332                                 


Q ss_pred             CCcceEEEEEEecCCC--EEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296          420 SAYSWVSSVTVCGGSD--LAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS  478 (513)
Q Consensus       420 ~~~~~i~~~~~s~~~~--~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~  478 (513)
                           +..++|+|||+  ++++++.|+.|+|||+.++ +.+..+..  +....+.|++.++
T Consensus       320 -----~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg-~~~~~~~~--~g~~P~~l~~~~~  372 (373)
T d2madh_         320 -----VDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQSTVE--LGSGPQVLSVMNE  372 (373)
T ss_pred             -----eeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEECC--CCCCCcEEEEecC
Confidence                 88999999998  4568899999999999998 44444433  3444666666543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=6.3e-17  Score=150.22  Aligned_cols=262  Identities=11%  Similarity=0.009  Sum_probs=168.7

Q ss_pred             ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEe----------CCceEEEEeCCCCccccccCCChhhhccCCCCCC
Q 010296          143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSAS----------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP  212 (513)
Q Consensus       143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  212 (513)
                      +++....+.+.++..+..  ..++|||||++|++.+          .++.|++||+.+++.+..+.....          
T Consensus        32 v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~----------   99 (355)
T d2bbkh_          32 VIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA----------   99 (355)
T ss_dssp             EEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC----------
T ss_pred             EEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc----------
Confidence            345566666666665544  4799999999988643          478999999999987765411000          


Q ss_pred             CCCCCCCcccEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCcceeeeccCcCC-------CeEEEEEecCCCeEEEE-eC
Q 010296          213 QGRATKQSKHILALAVSSDGRYLASGG--LDRHIHLWDTRIQEHIQAFPGHRG-------PVSCLTFRQGTSELFSG-SF  282 (513)
Q Consensus       213 ~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~-~~  282 (513)
                        ...........++|+|+++++++++  .+..+.+|+..+++.+..+..+..       ....+.+++++..++.. ..
T Consensus       100 --~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~  177 (355)
T d2bbkh_         100 --PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT  177 (355)
T ss_dssp             --CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             --ceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecC
Confidence              0111122344689999999888765  457899999999998877764332       22344555555554432 23


Q ss_pred             CCcEEEEeCCCCceeEEeecccCCeEEEEeeC-CCeEEEEeCCCcEEEEecCCCeeeEEe---cC----------CCCee
Q 010296          283 DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-KERVLTVGRDRSMQLWKVPEESRLVFR---AP----------ASSLE  348 (513)
Q Consensus       283 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~~~---~~----------~~~v~  348 (513)
                      ++.+.+++......     .+...+....+.+ ++.++.++.++.+++|++..+......   .+          .....
T Consensus       178 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  252 (355)
T d2bbkh_         178 EGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ  252 (355)
T ss_dssp             SSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred             CCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceE
Confidence            34444444433321     1233344445555 457778889999999999877543211   11          12334


Q ss_pred             EEEeecCCe-EEEEeC----------CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcC
Q 010296          349 CCCFISNDE-FLSGSD----------DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYH  417 (513)
Q Consensus       349 ~~~~~~~~~-~~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  417 (513)
                      .+++++++. ++....          ...|.+||..+++.+..+....                                
T Consensus       253 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~--------------------------------  300 (355)
T d2bbkh_         253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--------------------------------  300 (355)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--------------------------------
T ss_pred             EEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCC--------------------------------
Confidence            577888875 333222          2469999999999888775322                                


Q ss_pred             CCCCcceEEEEEEecCCC--EEEEecCCCcEEEEEeCCCCcceeeee
Q 010296          418 SSSAYSWVSSVTVCGGSD--LAASGAGNGSVRLWAIESETKDIQPLY  462 (513)
Q Consensus       418 ~~~~~~~i~~~~~s~~~~--~l~~g~~dg~v~vwd~~~~~~~~~~~~  462 (513)
                            .+.+++|+|+|+  ++++++.|+.|+|||+.++ +.+..+.
T Consensus       301 ------~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~  340 (355)
T d2bbkh_         301 ------EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVN  340 (355)
T ss_dssp             ------EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEEC
T ss_pred             ------CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEe
Confidence                  288999999997  4567788999999999998 4444443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=1.3e-16  Score=149.02  Aligned_cols=293  Identities=8%  Similarity=-0.138  Sum_probs=189.2

Q ss_pred             ccCCCeEEEEECCCCCeEEE---EeCCc--eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          157 KHRQSVTAVALSEDDSKGFS---ASKDG--SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t---~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      .+.++...++..++++....   ...++  .|.+||..+++.+..+                   ..+..  ..++|+|+
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~-------------------~~~~~--~~~a~spD   75 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHS-------------------LGAFL--SLAVAGHS   75 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-------------------EECTT--CEEEECTT
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEE-------------------eCCCC--CcceECCC
Confidence            46677777788888886432   33444  4677799888877644                   22222  25899999


Q ss_pred             CCEEEEEe----------CCCcEEEEeCCCcceeeeccCcCC-------CeEEEEEecCCCeEEEEe-CCCcEEEEeCCC
Q 010296          232 GRYLASGG----------LDRHIHLWDTRIQEHIQAFPGHRG-------PVSCLTFRQGTSELFSGS-FDRTVKIWNAED  293 (513)
Q Consensus       232 ~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  293 (513)
                      |++|++.+          .++.|.+||..+++++..+..+..       ....++|+|+|++|+++. .++.|.+||+.+
T Consensus        76 g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~  155 (368)
T d1mdah_          76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG  155 (368)
T ss_dssp             SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT
T ss_pred             CCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            99888765          367799999999998877654322       234689999999998776 579999999999


Q ss_pred             CceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEE-------ecCCCCeeEEEeecCCeEEEEeCCCC
Q 010296          294 RAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF-------RAPASSLECCCFISNDEFLSGSDDGS  366 (513)
Q Consensus       294 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~dg~  366 (513)
                      ++.+..+..+....  +.......+++.+.||.+.+|++........       ..+...+..+.+.+++.++. ...+.
T Consensus       156 ~~~~~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~  232 (368)
T d1mdah_         156 ASDDQLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASS  232 (368)
T ss_dssp             TEEEEEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-CBSSC
T ss_pred             CcEeEEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE-ecCCC
Confidence            99888776544332  1122344666777888888888765543311       12223344566667765443 34567


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---  443 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---  443 (513)
                      ++++++.................          ....               .........++++|++..++....+   
T Consensus       233 v~~~~~~~~~~~~~~~~~~~~~~----------~~~~---------------~~~~~g~~~~a~~~~~~~~~v~~~~~~~  287 (368)
T d1mdah_         233 ILQGDIPAAGATMKAAIDGNESG----------RKAD---------------NFRSAGFQMVAKLKNTDGIMILTVEHSR  287 (368)
T ss_dssp             CEEEECCSSCCEEECCCCSSCTH----------HHHT---------------TEEECSSSCEEEETTTTEEEEEEEECSS
T ss_pred             EEEEeecCCceEEEeecccccce----------eeee---------------eecCCCceeEEEcCCCCEEEEEecCCCc
Confidence            88888776655433221110000          0000               0000113457889988877665322   


Q ss_pred             ------CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCC-EEEEEecCCCcccccccCCCcc
Q 010296          444 ------GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGHLPAAR  502 (513)
Q Consensus       444 ------g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~~~~~~  502 (513)
                            ..|++||..++ +.   +..+.+...+.+++|+|||+ +|+++...++.|++||..+++.
T Consensus       288 ~~~~~~~~v~v~D~~t~-~~---~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         288 SCLAAAENTSSVTASVG-QT---SGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             CTTSCEEEEEEEESSSC-CE---EECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             eeecCCceEEEEECCCC-cE---eEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence                  35999999888 32   33334567799999999997 4556657889999999887753

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.67  E-value=1.6e-14  Score=139.38  Aligned_cols=111  Identities=13%  Similarity=0.013  Sum_probs=87.3

Q ss_pred             hhhhccCCCeEEEEECCCCCeEEEEeC---------CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296          153 RVLLKHRQSVTAVALSEDDSKGFSASK---------DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI  223 (513)
Q Consensus       153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (513)
                      ..+..|...|.++.|||||++|+.++.         ++.+.|||+.+++...                    +..|...+
T Consensus        55 ~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~--------------------l~~~~~~~  114 (470)
T d2bgra1          55 STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT--------------------EERIPNNT  114 (470)
T ss_dssp             TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC--------------------SSCCCTTE
T ss_pred             hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc--------------------cccCCccc
Confidence            356678889999999999999998753         5778999999887543                    35678889


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCc------------------CCCeEEEEEecCCCeEEEEeCCC
Q 010296          224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGH------------------RGPVSCLTFRQGTSELFSGSFDR  284 (513)
Q Consensus       224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~dg  284 (513)
                      ..+.|||||++||... ++.+++|++.++...+....+                  .+....+.|+|+|++|+....|.
T Consensus       115 ~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         115 QWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             EEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             cccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence            9999999999999975 678999999988766543321                  23345688999999999876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=3.3e-15  Score=139.27  Aligned_cols=254  Identities=7%  Similarity=-0.055  Sum_probs=163.0

Q ss_pred             CCCcccchhhhhccCCCeEEEEECCCCCeEEEEe----------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCC
Q 010296          145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSAS----------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQG  214 (513)
Q Consensus       145 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (513)
                      +......+..+..+..+  .++|+|||++|++.+          .|++|.+||..+++.+..+....            .
T Consensus        52 d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~------------~  117 (368)
T d1mdah_          52 CAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD------------A  117 (368)
T ss_dssp             ETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT------------S
T ss_pred             eCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCc------------c
Confidence            45555666666666554  689999999998764          37889999999998776541000            0


Q ss_pred             CCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 010296          215 RATKQSKHILALAVSSDGRYLASGG-LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED  293 (513)
Q Consensus       215 ~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  293 (513)
                      ...........++|+|||++|+++. .++.+.+||+.+++.+..+..+.....   +......+++.+.||.+.+|++..
T Consensus       118 ~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~  194 (368)
T d1mdah_         118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCS
T ss_pred             ceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecC
Confidence            0011112233589999999998876 469999999999998888765543321   112234566777788888888765


Q ss_pred             CceeEE------eecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecC-------------CCCeeEEEeec
Q 010296          294 RAYIST------LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAP-------------ASSLECCCFIS  354 (513)
Q Consensus       294 ~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-------------~~~v~~~~~~~  354 (513)
                      ......      +..+...+..+.+.+++.++. ...+.++++++...........             ......+++++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~  273 (368)
T d1mdah_         195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK  273 (368)
T ss_dssp             SCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred             CceeeeeeecccccccccceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC
Confidence            433222      122334445566666665543 3345666666655443322111             11233467777


Q ss_pred             CCe-E-EEEeCC--------CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296          355 NDE-F-LSGSDD--------GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW  424 (513)
Q Consensus       355 ~~~-~-~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  424 (513)
                      ++. + ++...+        ..|.+||..+++.+..+...                                      ..
T Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~--------------------------------------~~  315 (368)
T d1mdah_         274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--------------------------------------HD  315 (368)
T ss_dssp             TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--------------------------------------EE
T ss_pred             CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC--------------------------------------Cc
Confidence            764 3 222222        35889999999887766432                                      23


Q ss_pred             EEEEEEecCCC--EEEEecCCCcEEEEEeCCC
Q 010296          425 VSSVTVCGGSD--LAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       425 i~~~~~s~~~~--~l~~g~~dg~v~vwd~~~~  454 (513)
                      +..++|+|||+  +++++..++.|+|||..++
T Consensus       316 ~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         316 SDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             eeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            88999999997  3567778899999999998

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.61  E-value=4.3e-14  Score=130.61  Aligned_cols=298  Identities=10%  Similarity=0.011  Sum_probs=181.7

Q ss_pred             EEEEeCCceEEEEeCCCCccccccCC-ChhhhccCCC----------CCCCCCCCCCcccEEEEEEcCCCCEEEEEe-CC
Q 010296          174 GFSASKDGSILHWDVSSGKGVKYLWP-SEEVLKSHGA----------KDPQGRATKQSKHILALAVSSDGRYLASGG-LD  241 (513)
Q Consensus       174 l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d  241 (513)
                      +++++.+|.|+||++.+++.++++.- +.......+.          ......-..|.-.+....++|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            55888999999999999988776521 0000000000          001111233445566777789999986664 67


Q ss_pred             CcEEEEeCCCcceeeecc-CcCCCeEEEEEecCCCe--EEEEeCCC-----------------cEEEEeCCCCceeEEee
Q 010296          242 RHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQGTSE--LFSGSFDR-----------------TVKIWNAEDRAYISTLF  301 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--l~~~~~dg-----------------~i~iwd~~~~~~~~~~~  301 (513)
                      +.|.++|+.+++....+. .+...+..++|+|++++  ++..+.+.                 .+..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            899999999998877654 25678999999999985  33333322                 23568888887777665


Q ss_pred             cccCCeEEEEeeCCCeEE-EEeCC-----------------------------------------CcEEEEecCCCeeeE
Q 010296          302 GHQSEVLTIDCLRKERVL-TVGRD-----------------------------------------RSMQLWKVPEESRLV  339 (513)
Q Consensus       302 ~~~~~v~~~~~~~~~~~~-~~~~d-----------------------------------------~~i~iwd~~~~~~~~  339 (513)
                      . ...+..+.++|++..+ +++.+                                         +.+.++.........
T Consensus       174 v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         174 V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             c-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            3 3457788899988654 44322                                         223333333333333


Q ss_pred             EecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcC
Q 010296          340 FRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYH  417 (513)
Q Consensus       340 ~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  417 (513)
                      ...-......+.++|+|+  ++++..+++|.+||+.+....  +......           ........           
T Consensus       253 ~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~--~~~~~~~-----------~~~~~~~~-----------  308 (441)
T d1qnia2         253 YIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL--FEDKIEL-----------RDTIVAEP-----------  308 (441)
T ss_dssp             EECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH--TTTSSCG-----------GGGEEECC-----------
T ss_pred             EEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH--hhccCCc-----------ceEEEeec-----------
Confidence            333344567789999997  457788999999998653211  0000000           00000000           


Q ss_pred             CCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC------C---cceeee---eecCcccEEEEEEeecCCCEEEEE
Q 010296          418 SSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE------T---KDIQPL---YNLPLVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       418 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~------~---~~~~~~---~~~~~~~~v~~v~~sp~~~~l~~~  485 (513)
                       .. .-.....+|.++|..+.+...|..|..|++...      .   ..+..+   +...|...+.+.+|+|||+||+++
T Consensus       309 -~~-glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         309 -EL-GLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             -BC-CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             -cc-ccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence             00 001455689999988889999999999998421      1   111111   223466677788899999999999


Q ss_pred             ecCCCcccccccCC
Q 010296          486 VGQEPRLGRWGHLP  499 (513)
Q Consensus       486 ~~~dg~v~~W~~~~  499 (513)
                       +.-..=|++.+-+
T Consensus       387 -~k~s~dr~~~~g~  399 (441)
T d1qnia2         387 -SKFSKDRFLPVGP  399 (441)
T ss_dssp             -ESCCGGGSCCCSS
T ss_pred             -CccccccCcCCCC
Confidence             4443444554433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.47  E-value=2.6e-12  Score=123.48  Aligned_cols=143  Identities=10%  Similarity=0.071  Sum_probs=107.9

Q ss_pred             EEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC--
Q 010296          163 TAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL--  240 (513)
Q Consensus       163 ~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--  240 (513)
                      ..+.|.+++.++..  .++.|.+||+.+++....+.              ...+..|...|.++.|||||++|+.++.  
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~--------------~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLE--------------NSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEEC--------------TTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEc--------------hhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            35789999987764  47889999999998754331              1134567778999999999999998753  


Q ss_pred             -------CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc----------
Q 010296          241 -------DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH----------  303 (513)
Q Consensus       241 -------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------  303 (513)
                             ++.+.|||+.+++. ..+..|...+..+.|+|+|+.|+.. .++.+++|++.++........+          
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~  161 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT  161 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred             ceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCccccccc
Confidence                   46789999998874 5577789999999999999999986 4678999999988765443211          


Q ss_pred             --------cCCeEEEEeeCCCeEE-EEeC
Q 010296          304 --------QSEVLTIDCLRKERVL-TVGR  323 (513)
Q Consensus       304 --------~~~v~~~~~~~~~~~~-~~~~  323 (513)
                              .+....+.|+|+|+.+ ....
T Consensus       162 d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         162 DWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             CHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             ceeeeeeecCCccccEECCCCCccceeEe
Confidence                    2234567899998544 4443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.36  E-value=2e-11  Score=112.64  Aligned_cols=261  Identities=9%  Similarity=-0.035  Sum_probs=148.8

Q ss_pred             EEEEeCCCcEEEEeCCCcceeeeccC------------------------------cCCCeEEEEEecCCCeEEEE-eCC
Q 010296          235 LASGGLDRHIHLWDTRIQEHIQAFPG------------------------------HRGPVSCLTFRQGTSELFSG-SFD  283 (513)
Q Consensus       235 l~s~~~dg~i~vwd~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~-~~d  283 (513)
                      +++++.+|.|+||++.+++.+.++.-                              |........++|||++|++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            66788899999999999887766421                              22234444557899998765 468


Q ss_pred             CcEEEEeCCCCceeEEee-cccCCeEEEEeeCCCe--EEEEeCCCcE------------------EEEecCCCeeeEEec
Q 010296          284 RTVKIWNAEDRAYISTLF-GHQSEVLTIDCLRKER--VLTVGRDRSM------------------QLWKVPEESRLVFRA  342 (513)
Q Consensus       284 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~~d~~i------------------~iwd~~~~~~~~~~~  342 (513)
                      +.|.++|+.+++....+. .+...+..++|+|+++  ++++.....+                  ..+|..+........
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            899999999998877664 3566789999999875  4444433333                  446666665543333


Q ss_pred             CCCCeeEEEeecCCe-EEEEeCC-CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCC----CCc
Q 010296          343 PASSLECCCFISNDE-FLSGSDD-GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNP----GSY  416 (513)
Q Consensus       343 ~~~~v~~~~~~~~~~-~~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~  416 (513)
                      ....+..+.++|+|. +++.+.+ ..+..++..+.+....+.....  .....+..++..+.+.......+..    ...
T Consensus       174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~--p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV--ERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH--HHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCc--cceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            345677899999997 3344433 3444444444433322221100  0000011111111111000000000    000


Q ss_pred             CCCCCcceEEEEEEecCCCEEE-EecCCCcEEEEEeCCCCcc-------eeeeee-cCcccEEEEEEeecCCCEEEEEec
Q 010296          417 HSSSAYSWVSSVTVCGGSDLAA-SGAGNGSVRLWAIESETKD-------IQPLYN-LPLVGFVNSLAFAKSGQFLIAGVG  487 (513)
Q Consensus       417 ~~~~~~~~i~~~~~s~~~~~l~-~g~~dg~v~vwd~~~~~~~-------~~~~~~-~~~~~~v~~v~~sp~~~~l~~~~~  487 (513)
                      ...........+.++|+|++++ ++..+++|.|||+.+....       ...+.. ....-.....+|+++|..+ ++..
T Consensus       252 ~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~y-ts~~  330 (441)
T d1qnia2         252 RYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAY-TTLF  330 (441)
T ss_dssp             EEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEE-EEET
T ss_pred             EEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEE-Eccc
Confidence            0001112256799999999875 5678899999998653110       111111 1111224557899998655 4458


Q ss_pred             CCCcccccccC
Q 010296          488 QEPRLGRWGHL  498 (513)
Q Consensus       488 ~dg~v~~W~~~  498 (513)
                      -|..|..|++.
T Consensus       331 ~ds~v~kw~~~  341 (441)
T d1qnia2         331 IDSQVCKWNIA  341 (441)
T ss_dssp             TTTEEEEEEHH
T ss_pred             ccceEEEeccc
Confidence            99999999864

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.34  E-value=1.6e-10  Score=106.39  Aligned_cols=262  Identities=7%  Similarity=0.010  Sum_probs=151.4

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc--CcCCCeEEEEEecCCCeEE--EEe-CCCcEEEEeCCCC
Q 010296          220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP--GHRGPVSCLTFRQGTSELF--SGS-FDRTVKIWNAEDR  294 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~--~~~-~dg~i~iwd~~~~  294 (513)
                      ...+..|+|+|++++|++... +.+..|.+.....+....  ........+.++++++.++  ++. ..++|..+.+...
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            334567999999999988764 567777765332221111  1223345677788887543  222 2455555543211


Q ss_pred             -------------ce---eEE-eecccCCeEEEEeeCCCeEE-EEeC-CCcEEEEecCCCeee------EEecCCCCeeE
Q 010296          295 -------------AY---IST-LFGHQSEVLTIDCLRKERVL-TVGR-DRSMQLWKVPEESRL------VFRAPASSLEC  349 (513)
Q Consensus       295 -------------~~---~~~-~~~~~~~v~~~~~~~~~~~~-~~~~-d~~i~iwd~~~~~~~------~~~~~~~~v~~  349 (513)
                                   ..   ... -......+.++.|+|+++++ ++.. ...|.+|+......+      ...........
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~  197 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEE
Confidence                         10   000 11123347899999999654 4443 457888876543322      12234567889


Q ss_pred             EEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEE
Q 010296          350 CCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSS  427 (513)
Q Consensus       350 ~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~  427 (513)
                      ++|+|++.  +++...+++|.+|++...+.............               ..   ..................
T Consensus       198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~---------------~~---~~~~~~~~~~~~~~~~~~  259 (365)
T d1jofa_         198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI---------------PP---GIPDRDPETGKGLYRADV  259 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS---------------CT---TCCCBCTTTSSBSEEEEE
T ss_pred             EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccc---------------cc---cccccccccccccCCccc
Confidence            99999996  45667789999999877654332221100000               00   000000001233345778


Q ss_pred             EEEecCCCEEEEecC------CCcEEEEEeCCCCcceeee--ee-cCcccEEEEEEeec-CCCEEEEEecCCCccccccc
Q 010296          428 VTVCGGSDLAASGAG------NGSVRLWAIESETKDIQPL--YN-LPLVGFVNSLAFAK-SGQFLIAGVGQEPRLGRWGH  497 (513)
Q Consensus       428 ~~~s~~~~~l~~g~~------dg~v~vwd~~~~~~~~~~~--~~-~~~~~~v~~v~~sp-~~~~l~~~~~~dg~v~~W~~  497 (513)
                      +.++|+|++|+++..      .+.|..|++..........  .. ........+++|+| +|++|+++...++.|.+|++
T Consensus       260 i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         260 CALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             eEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            999999999988742      2347788876642221111  11 11233467799998 89999999788899999987


Q ss_pred             CCC
Q 010296          498 LPA  500 (513)
Q Consensus       498 ~~~  500 (513)
                      ...
T Consensus       340 ~~~  342 (365)
T d1jofa_         340 KDE  342 (365)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.1e-08  Score=89.67  Aligned_cols=218  Identities=10%  Similarity=0.008  Sum_probs=131.7

Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEE--EEeC
Q 010296          218 KQSKHILALAVSSDGRYLASGGLDR---HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVK--IWNA  291 (513)
Q Consensus       218 ~~~~~v~~~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~--iwd~  291 (513)
                      .+...+.+-+|||||+.||......   .+.+.+...+... .+..+........|+|++..++.... .+...  .+..
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            4466688999999999999775433   4777777665544 34447788899999999998886553 33332  3333


Q ss_pred             CCCceeEEeecccCCeEEEEeeCCC--eEEEEeCCC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCC
Q 010296          292 EDRAYISTLFGHQSEVLTIDCLRKE--RVLTVGRDR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDG  365 (513)
Q Consensus       292 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg  365 (513)
                      ....... ............+++++  .+++...++  .|.+.++...................++|++. ++ +....+
T Consensus       115 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  193 (269)
T d2hqsa1         115 ASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG  193 (269)
T ss_dssp             TTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             cccccee-eeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCC
Confidence            3332222 22233344444555554  333444455  45566666665555555566677788999986 43 444555


Q ss_pred             CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC---
Q 010296          366 SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG---  442 (513)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---  442 (513)
                      ...+|..........+...                                     ........|||||++|+..+.   
T Consensus       194 ~~~i~~~~~~~~~~~~~~~-------------------------------------~~~~~~p~~SPDG~~i~f~s~~~~  236 (269)
T d2hqsa1         194 QQHIAKQDLATGGVQVLSS-------------------------------------TFLDETPSLAPNGTMVIYSSSQGM  236 (269)
T ss_dssp             CEEEEEEETTTCCEEECCC-------------------------------------SSSCEEEEECTTSSEEEEEEEETT
T ss_pred             ceeeeEeecccccceEeec-------------------------------------CccccceEECCCCCEEEEEEcCCC
Confidence            5555544333222222111                                     112567789999998875543   


Q ss_pred             CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296          443 NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS  478 (513)
Q Consensus       443 dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~  478 (513)
                      ...|+++++...  ....+..  ..+.+...+|||-
T Consensus       237 ~~~l~~~~~dg~--~~~~lt~--~~g~~~~p~WSP~  268 (269)
T d2hqsa1         237 GSVLNLVSTDGR--FKARLPA--TDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEEEETTSC--CEEECCC--SSSEEEEEEECCC
T ss_pred             CcEEEEEECCCC--CEEEEeC--CCCcEEeEEeCCC
Confidence            346888998765  2233333  4677888999983

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.27  E-value=1.7e-09  Score=96.73  Aligned_cols=193  Identities=10%  Similarity=0.030  Sum_probs=134.4

Q ss_pred             CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296          161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL  240 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  240 (513)
                      .+..++++|||+++++...+++|..|+........                     ......+.+++|+++|+++++...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~---------------------~~~~~~~~gla~~~dG~l~v~~~~   87 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIH---------------------ATVEGKVSGLAFTSNGDLVATGWN   87 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEE---------------------EECSSEEEEEEECTTSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEE---------------------EcCCCCcceEEEcCCCCeEEEecC
Confidence            57899999999999999999999888865432221                     234466899999999999999888


Q ss_pred             CCcEEEEeCCCcce-eeec--cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee----------cccCCe
Q 010296          241 DRHIHLWDTRIQEH-IQAF--PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF----------GHQSEV  307 (513)
Q Consensus       241 dg~i~vwd~~~~~~-~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~~v  307 (513)
                      ++.+.+|+...... ...+  .......+.+++.++++++++.+.++.|..++...+.......          ......
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1          88 ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             CceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccc
Confidence            88888887643321 1111  1244568899999999988888889999999988765332221          112234


Q ss_pred             EEEEeeCCCeEEEEeCCCcEEEEecCCCeee---EEecCCCCeeEEEeecCCeEE-EEeCCCCEEEEecCC
Q 010296          308 LTIDCLRKERVLTVGRDRSMQLWKVPEESRL---VFRAPASSLECCCFISNDEFL-SGSDDGSIELWSLLR  374 (513)
Q Consensus       308 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~-~~~~dg~i~iwd~~~  374 (513)
                      ..+.+..+..+++....+.|+.+++......   ...........+++.++|.++ +...++.|..++...
T Consensus       168 ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         168 NGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             ccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence            5666665545557777889998887654322   122223445678999999754 555688888887653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.26  E-value=3.7e-09  Score=94.70  Aligned_cols=243  Identities=5%  Similarity=-0.007  Sum_probs=151.6

Q ss_pred             EEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCcceeeeccC----cCCCeEEEEEecCCCeEEEEeCCCcEEEEeC
Q 010296          223 ILALAVSSDGRYLASGGL-------DRHIHLWDTRIQEHIQAFPG----HRGPVSCLTFRQGTSELFSGSFDRTVKIWNA  291 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  291 (513)
                      .-.++|.|+|+++++...       +|.|..||..++........    ..+....+.|.++++.|+++...+.|..++.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            566899999997776433       46799999888765433322    2234578999999998888887778999998


Q ss_pred             CCCceeEEeecccC----CeEEEEeeCCCeEEEEeCC----------------CcEEEEecCCCeeeEEecCCCCeeEEE
Q 010296          292 EDRAYISTLFGHQS----EVLTIDCLRKERVLTVGRD----------------RSMQLWKVPEESRLVFRAPASSLECCC  351 (513)
Q Consensus       292 ~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~v~~~~  351 (513)
                      .............+    ..+.+.+.++|.++.+...                +.|+.++... ..............++
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~~pNGi~  178 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFPNGIA  178 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEESSEEEEE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCcceeeeeE
Confidence            76543221111111    3577889999988765432                3444444432 2222222233446788


Q ss_pred             eecCC-----e-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296          352 FISND-----E-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV  425 (513)
Q Consensus       352 ~~~~~-----~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  425 (513)
                      |++++     . +++-+..+.|..|++.....+.........                              ........
T Consensus       179 ~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~------------------------------~~~~~~~p  228 (314)
T d1pjxa_         179 VRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI------------------------------PGTHEGGA  228 (314)
T ss_dssp             EEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC------------------------------CCCSSCEE
T ss_pred             ECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc------------------------------cccccccc
Confidence            88764     2 345567788888887644333221100000                              01111225


Q ss_pred             EEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296          426 SSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP  499 (513)
Q Consensus       426 ~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~  499 (513)
                      -.+++..+|++.++....+.|.+|+...+ .....+. . ....+++++|.|+++.|+++.+..|+|...+...
T Consensus       229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g-~~~~~i~-~-p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         229 DGMDFDEDNNLLVANWGSSHIEVFGPDGG-QPKMRIR-C-PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTTCB-SCSEEEE-C-SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             eeeEEecCCcEEEEEcCCCEEEEEeCCCC-EEEEEEE-C-CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            68999999998888878889999997765 2222222 2 2356789999999987777657788887766543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.26  E-value=2.1e-09  Score=95.97  Aligned_cols=224  Identities=13%  Similarity=0.007  Sum_probs=150.1

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce-eEEe
Q 010296          222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY-ISTL  300 (513)
Q Consensus       222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~  300 (513)
                      .+..++++|+|+++++...++.|..|+... . ...+......+.+++|+++|+++++...++.+.+|+...... ...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            477899999999999999899999998653 3 233444567899999999999888888888888888654322 2222


Q ss_pred             --ecccCCeEEEEeeCCCeEEEE-eCCCcEEEEecCCCeeeEEec-----------CCCCeeEEEeecCCeEEEEeCCCC
Q 010296          301 --FGHQSEVLTIDCLRKERVLTV-GRDRSMQLWKVPEESRLVFRA-----------PASSLECCCFISNDEFLSGSDDGS  366 (513)
Q Consensus       301 --~~~~~~v~~~~~~~~~~~~~~-~~d~~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~dg~  366 (513)
                        .........+.+.+++.++++ +..+.+..++...........           .......+.+..+..+++.+..+.
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~  186 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  186 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCe
Confidence              223456788999999987754 467888888887765442211           122345566655545667778888


Q ss_pred             EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296          367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV  446 (513)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v  446 (513)
                      |..++.............                                   ........+++.++|+++++...++.|
T Consensus       187 i~~~~~~~~~~~~~~~~~-----------------------------------~~~~~pdgia~d~dG~l~va~~~~~~V  231 (302)
T d2p4oa1         187 LLRIPVDSTDKPGEPEIF-----------------------------------VEQTNIDDFAFDVEGNLYGATHIYNSV  231 (302)
T ss_dssp             EEEEEBCTTSCBCCCEEE-----------------------------------EESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             EEeccccccccccccccc-----------------------------------cCCCCCcceEECCCCCEEEEEcCCCcE
Confidence            888877654322111100                                   000115679999999988888888988


Q ss_pred             EEEEeCCCCcceeeeeec-CcccEEEEEEe---ecCCCEEEEE
Q 010296          447 RLWAIESETKDIQPLYNL-PLVGFVNSLAF---AKSGQFLIAG  485 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~~~-~~~~~v~~v~~---sp~~~~l~~~  485 (513)
                      ..++....   ...+... ......++++|   ++|++.|+++
T Consensus       232 ~~i~p~G~---~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         232 VRIAPDRS---TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             EEECTTCC---EEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             EEECCCCC---EEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence            88876543   1222221 12344789999   6788888776

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.23  E-value=2.6e-08  Score=87.61  Aligned_cols=242  Identities=10%  Similarity=0.133  Sum_probs=158.5

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC------cCCCeEEEEEecCCCe-EEE-EeCCCcEEEEeCC
Q 010296          221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG------HRGPVSCLTFRQGTSE-LFS-GSFDRTVKIWNAE  292 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~-l~~-~~~dg~i~iwd~~  292 (513)
                      .....|+++++++++++-..++.|++||.. ++.+..+..      .......+++.++... +++ .+.++.|.+++. 
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence            346899999999988887778899999965 666655532      1223456676665443 333 344567777776 


Q ss_pred             CCceeEEee-cccCCeEEEEeeCCCeEEEEe-CCCcEEEEecCCCeeeEE--ecCCCCeeEEEeecCCe-EEEEeCCCCE
Q 010296          293 DRAYISTLF-GHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVF--RAPASSLECCCFISNDE-FLSGSDDGSI  367 (513)
Q Consensus       293 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~~~~~dg~i  367 (513)
                      .+.....+. ........+++.+++.++.+. ..+.+.+++........+  ..+......+++.+++. +++....+.|
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccce
Confidence            455555543 234556788888888776554 456688887655433332  23445677888888887 5566778899


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CCcE
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NGSV  446 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~v  446 (513)
                      ++|+. .++.+..+..                                   .........|++.++|+++++-.. ++.|
T Consensus       181 ~~~d~-~G~~~~~~g~-----------------------------------~g~~~~P~giavD~~G~i~Vad~~~~~~v  224 (279)
T d1q7fa_         181 KVFNY-EGQYLRQIGG-----------------------------------EGITNYPIGVGINSNGEILIADNHNNFNL  224 (279)
T ss_dssp             EEEET-TCCEEEEESC-----------------------------------TTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred             eeeec-CCceeeeecc-----------------------------------cccccCCcccccccCCeEEEEECCCCcEE
Confidence            99995 4555555531                                   111222788999999998877554 4569


Q ss_pred             EEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccc
Q 010296          447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNG  504 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~  504 (513)
                      .+|+.. + ..+..+...........|++.|+|.++ ++ ..+++|++|....-++.+
T Consensus       225 ~~f~~~-G-~~~~~~~~~~~~~~p~~vav~~dG~l~-V~-~~n~~v~~fr~~~~~~~~  278 (279)
T d1q7fa_         225 TIFTQD-G-QLISALESKVKHAQCFDVALMDDGSVV-LA-SKDYRLYIYRYVQLAPVG  278 (279)
T ss_dssp             EEECTT-S-CEEEEEEESSCCSCEEEEEEETTTEEE-EE-ETTTEEEEEECSCCCCTT
T ss_pred             EEECCC-C-CEEEEEeCCCCCCCEeEEEEeCCCcEE-EE-eCCCeEEEEEeeeecCCC
Confidence            998843 3 333444332233457889999999754 45 467899999988776654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=3.5e-09  Score=92.28  Aligned_cols=235  Identities=10%  Similarity=0.014  Sum_probs=149.5

Q ss_pred             CCeEEEEECCCCCeEEEE-eCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          160 QSVTAVALSEDDSKGFSA-SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ..-..|+++++|+..++. +..+.+..++..........                   ..-......|+++++++++++.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~-------------------~~~~~~p~gvav~~~g~i~v~d   74 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-------------------FNGLYQPQGLAVDGAGTVYVTD   74 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC-------------------CCSCCSCCCEEECTTCCEEEEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec-------------------cCCccCceEEEEcCCCCEEEee
Confidence            345899999999976654 45577777765544322211                   0111235678999999988877


Q ss_pred             eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeE
Q 010296          239 GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERV  318 (513)
Q Consensus       239 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  318 (513)
                      ...+.+++++..+...+.... ......++++.++++++++-.....+..++...................+++.+++.+
T Consensus        75 ~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~  153 (260)
T d1rwia_          75 FNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNV  153 (260)
T ss_dssp             TTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCE
T ss_pred             eeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCE
Confidence            777777777655555444433 2356789999999988777766777888887654433222222345578899888876


Q ss_pred             EE-EeCCCcEEEEecCCCeeeEEe-cCCCCeeEEEeecCCeEE-EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcc
Q 010296          319 LT-VGRDRSMQLWKVPEESRLVFR-APASSLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFE  395 (513)
Q Consensus       319 ~~-~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  395 (513)
                      +. ....+.|..++.......... ........+++.++|.|+ +....+.|..++..... ...+..            
T Consensus       154 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~------------  220 (260)
T d1rwia_         154 YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPF------------  220 (260)
T ss_dssp             EEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCC------------
T ss_pred             eeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEcc------------
Confidence            64 456778999998766555433 344567889999988755 44456777777654432 111110            


Q ss_pred             cCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          396 QDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       396 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                                              ........|+++++|.++++-..+++|+.++.
T Consensus       221 ------------------------~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         221 ------------------------TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ------------------------CSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             ------------------------CCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence                                    11122789999999998888777776665553

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.22  E-value=1.4e-09  Score=99.85  Aligned_cols=248  Identities=8%  Similarity=0.075  Sum_probs=138.7

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-
Q 010296          158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA-  236 (513)
Q Consensus       158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-  236 (513)
                      ....+.-|+|+|++++|+++.. +.+..|.+.....+.....                 .........++++++++.++ 
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~-----------------~~~~~~p~~v~~~~~~~~~~v   99 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEAS-----------------HPIGGHPRANDADTNTRAIFL   99 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEE-----------------EECCSSGGGGCTTSCCEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEee-----------------ecCCCCcEEEEECCCCCEEEE
Confidence            4556778999999999998765 5677777764332221100                 00011233455666666332 


Q ss_pred             -EEe-CCCcEEEEeCCC-------------cce---ee-eccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCce
Q 010296          237 -SGG-LDRHIHLWDTRI-------------QEH---IQ-AFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRAY  296 (513)
Q Consensus       237 -s~~-~dg~i~vwd~~~-------------~~~---~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~  296 (513)
                       +.. ..+.|..+.+..             +..   .. .-......+.++.|+|+|++|+++.. ...|.+|+......
T Consensus       100 ~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~  179 (365)
T d1jofa_         100 LAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE  179 (365)
T ss_dssp             EECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             EEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc
Confidence             221 134444443211             000   10 01112335789999999999887764 45788887654322


Q ss_pred             e---EEe--ecccCCeEEEEeeCCCeEE--EEeCCCcEEEEecCCCeeeEE------e--c------------CCCCeeE
Q 010296          297 I---STL--FGHQSEVLTIDCLRKERVL--TVGRDRSMQLWKVPEESRLVF------R--A------------PASSLEC  349 (513)
Q Consensus       297 ~---~~~--~~~~~~v~~~~~~~~~~~~--~~~~d~~i~iwd~~~~~~~~~------~--~------------~~~~v~~  349 (513)
                      +   ..+  .......+.+.|+|+++++  +.-.+++|.+|++........      .  .            .......
T Consensus       180 ~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (365)
T d1jofa_         180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV  259 (365)
T ss_dssp             EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred             eeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccc
Confidence            2   111  1234568899999998655  444688999999876542211      0  0            0112446


Q ss_pred             EEeecCCeEE-EE-eCC-----CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296          350 CCFISNDEFL-SG-SDD-----GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY  422 (513)
Q Consensus       350 ~~~~~~~~~~-~~-~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  422 (513)
                      +.++|+|+++ ++ ..+     +.|..|++.....+.........                               ....
T Consensus       260 i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-------------------------------~~~G  308 (365)
T d1jofa_         260 CALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-------------------------------PTSG  308 (365)
T ss_dssp             EEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-------------------------------SSCC
T ss_pred             eEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE-------------------------------EcCC
Confidence            8899999743 32 222     23667776554333222110000                               1111


Q ss_pred             ceEEEEEEec-CCCEEEEe-cCCCcEEEEEeCCC
Q 010296          423 SWVSSVTVCG-GSDLAASG-AGNGSVRLWAIESE  454 (513)
Q Consensus       423 ~~i~~~~~s~-~~~~l~~g-~~dg~v~vwd~~~~  454 (513)
                      .+...++++| +|++|+++ ..++.|.+|++...
T Consensus       309 ~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         309 GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            2256789998 78977666 56789999998765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.21  E-value=2.3e-08  Score=89.31  Aligned_cols=241  Identities=10%  Similarity=0.068  Sum_probs=153.9

Q ss_pred             CCeEEEEECCCCCeEEEEeC-------CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296          160 QSVTAVALSEDDSKGFSASK-------DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG  232 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  232 (513)
                      ...-.++|.|+|+++++...       +|+|..|+..++.......+.               ..........++|.+++
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~---------------~~~~~g~P~Gl~~~~dg   82 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE---------------VNGYGGIPAGCQCDRDA   82 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE---------------ETTEECCEEEEEECSSS
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCc---------------cccCCCcceeEEEeCCC
Confidence            34567899999998776433       467888998877643322110               00112236789999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCcceeeeccCcC----CCeEEEEEecCCCeEEEEeC---------------CCcEEEEeCCC
Q 010296          233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHR----GPVSCLTFRQGTSELFSGSF---------------DRTVKIWNAED  293 (513)
Q Consensus       233 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~  293 (513)
                      +.|+++...+.|..++..............    ...+.+++.++|++.++-..               .|.|..++.. 
T Consensus        83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-  161 (314)
T d1pjxa_          83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-  161 (314)
T ss_dssp             SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred             CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-
Confidence            988888877789999977554332221111    13578999999987776422               2345555543 


Q ss_pred             CceeEEeecccCCeEEEEeeCCC-----eEEE-EeCCCcEEEEecCCCeeeE----E-ec---CCCCeeEEEeecCCeEE
Q 010296          294 RAYISTLFGHQSEVLTIDCLRKE-----RVLT-VGRDRSMQLWKVPEESRLV----F-RA---PASSLECCCFISNDEFL  359 (513)
Q Consensus       294 ~~~~~~~~~~~~~v~~~~~~~~~-----~~~~-~~~d~~i~iwd~~~~~~~~----~-~~---~~~~v~~~~~~~~~~~~  359 (513)
                      ++... +...-...+.++|++++     .+++ -+..+.|..|++.....+.    + ..   .......+++..+|.|.
T Consensus       162 g~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gnly  240 (314)
T d1pjxa_         162 GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL  240 (314)
T ss_dssp             SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred             CceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEE
Confidence            33332 22233445788888764     3444 4567889999876443221    1 11   12235678898998754


Q ss_pred             -EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EE
Q 010296          360 -SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LA  437 (513)
Q Consensus       360 -~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l  437 (513)
                       +....+.|.+|+...++.+..+....                                     ..+++++|.|+++ ++
T Consensus       241 Va~~~~g~I~~~dp~~g~~~~~i~~p~-------------------------------------~~~t~~afg~d~~~ly  283 (314)
T d1pjxa_         241 VANWGSSHIEVFGPDGGQPKMRIRCPF-------------------------------------EKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             EEEETTTEEEEECTTCBSCSEEEECSS-------------------------------------SCEEEEEECTTSSEEE
T ss_pred             EEEcCCCEEEEEeCCCCEEEEEEECCC-------------------------------------CCEEEEEEeCCCCEEE
Confidence             55577889999988887776665322                                     1288999999987 55


Q ss_pred             EEecCCCcEEEEEeCCC
Q 010296          438 ASGAGNGSVRLWAIESE  454 (513)
Q Consensus       438 ~~g~~dg~v~vwd~~~~  454 (513)
                      ++.+..|.|..+++...
T Consensus       284 Vt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         284 VTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEETTTTEEEEEECSSC
T ss_pred             EEECCCCcEEEEECCCC
Confidence            66677888888887655

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=1.2e-07  Score=83.23  Aligned_cols=242  Identities=9%  Similarity=0.071  Sum_probs=160.1

Q ss_pred             CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC-CEEEEE
Q 010296          160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG-RYLASG  238 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~  238 (513)
                      .....|+++|+++.+++-...+.|++||.. +..+..+...       .      ...+.......+++.++. .++++.
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~-------~------~~~~~~~~p~~~~~~~~~~~~~~~~   88 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGEC-------G------KRDSQLLYPNRVAVVRNSGDIIVTE   88 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCB-------S------SSTTCBSSEEEEEEETTTTEEEEEE
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEeccc-------C------CCcccccccccccccccccccceec
Confidence            346899999999988887788999999965 4444332100       0      001122235556666554 344433


Q ss_pred             -eCCCcEEEEeCCCcceeeecc-CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe--ecccCCeEEEEeeC
Q 010296          239 -GLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL--FGHQSEVLTIDCLR  314 (513)
Q Consensus       239 -~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~  314 (513)
                       +.++.|.+++. .+.....+. ........+++.+++.++++....+.+.+++.. ++.+..+  ..+......+++.+
T Consensus        89 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~  166 (279)
T d1q7fa_          89 RSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND  166 (279)
T ss_dssp             CGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS
T ss_pred             cCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecc
Confidence             34567777775 455555553 345567899999999988887778888888864 4555554  23455678888888


Q ss_pred             CCeEEE-EeCCCcEEEEecCCCeeeEEe--cCCCCeeEEEeecCCeEEEEe-C-CCCEEEEecCCCCeeEEeecCCCccc
Q 010296          315 KERVLT-VGRDRSMQLWKVPEESRLVFR--APASSLECCCFISNDEFLSGS-D-DGSIELWSLLRKKPVYIVKNAHPLLD  389 (513)
Q Consensus       315 ~~~~~~-~~~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~  389 (513)
                      ++.+++ ....+.|++|+........+-  +.......+++.++|.++++. . ++.|.+|+ .+++.+..+.....   
T Consensus       167 ~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~---  242 (279)
T d1q7fa_         167 KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVK---  242 (279)
T ss_dssp             SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSC---
T ss_pred             ceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCC---
Confidence            887764 456789999998765443432  234457789999999865543 3 45689998 46777766643211   


Q ss_pred             CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                                                      ......|++.|+|.++++ +.++.|++|.....
T Consensus       243 --------------------------------~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         243 --------------------------------HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             --------------------------------CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             --------------------------------CCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence                                            112788999999976554 57889999998664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=7.8e-09  Score=89.98  Aligned_cols=237  Identities=9%  Similarity=0.028  Sum_probs=149.0

Q ss_pred             cccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296          220 SKHILALAVSSDGRYLASG-GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS  298 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  298 (513)
                      ......|++.++|+..++. +..+.+..++............-......+++++++.++++....+.|++++..+...+.
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            3456899999999976665 445777777655443322222222345788999999877777666677776655554443


Q ss_pred             EeecccCCeEEEEeeCCCeEEEEe-CCCcEEEEecCCCeeeEEe-cCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCC
Q 010296          299 TLFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFR-APASSLECCCFISNDE-FLSGSDDGSIELWSLLRK  375 (513)
Q Consensus       299 ~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~  375 (513)
                      ... ....+..+++.+++.++++. ....+..++.......... ........+++.+++. +++...++.|..++....
T Consensus        93 ~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          93 PFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence            332 23457889998988777555 4555777766554433222 2234567888988887 456667788888887654


Q ss_pred             CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC
Q 010296          376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET  455 (513)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~  455 (513)
                      ... .+..                                    ........|++.++|+++++....+.|..++.....
T Consensus       172 ~~~-~~~~------------------------------------~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~  214 (260)
T d1rwia_         172 NQV-VLPF------------------------------------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  214 (260)
T ss_dssp             CEE-ECCC------------------------------------SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC
T ss_pred             eee-eeec------------------------------------cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe
Confidence            322 2211                                    111227889999999998888888888888765441


Q ss_pred             cceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296          456 KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL  498 (513)
Q Consensus       456 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~  498 (513)
                        ...+ ..........|+++++|.++++- ...++|+..+..
T Consensus       215 --~~~~-~~~~~~~P~~i~~d~~g~l~vad-~~~~rI~~i~~~  253 (260)
T d1rwia_         215 --STVL-PFTGLNTPLAVAVDSDRTVYVAD-RGNDRVVKLTSL  253 (260)
T ss_dssp             --CEEC-CCCSCCCEEEEEECTTCCEEEEE-GGGTEEEEECCC
T ss_pred             --EEEE-ccCCCCCeEEEEEeCCCCEEEEE-CCCCEEEEEeCC
Confidence              1222 11223456899999999877765 556677655443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.08  E-value=1.1e-07  Score=85.09  Aligned_cols=232  Identities=8%  Similarity=0.010  Sum_probs=150.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC----CCcEEEEeCCCCceeE
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF----DRTVKIWNAEDRAYIS  298 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~  298 (513)
                      +..++|.++|++.++-...+.|+.|+..++.....+.........|+++++|+++++...    .+.|...+..+.....
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~  121 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD  121 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeee
Confidence            568999999997777778899999998877766655556667899999999987776543    2345666665555443


Q ss_pred             Eeec--ccCCeEEEEeeCCCeEEEEeCC-------CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe--EEEEeCCCCE
Q 010296          299 TLFG--HQSEVLTIDCLRKERVLTVGRD-------RSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSI  367 (513)
Q Consensus       299 ~~~~--~~~~v~~~~~~~~~~~~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i  367 (513)
                      ....  ....+..+.+.++|+++.+...       +.+..++..................++|++++.  +++-+..+.|
T Consensus       122 ~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I  201 (319)
T d2dg1a1         122 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRL  201 (319)
T ss_dssp             EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             eccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCce
Confidence            3321  1234678889999988876543       345556655444333333334567899999885  4566778899


Q ss_pred             EEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296          368 ELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV  446 (513)
Q Consensus       368 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v  446 (513)
                      ..|++.... ............                              .........|++.++|++.++....+.|
T Consensus       202 ~~~d~~~~g~~~~~~~~~~~~~------------------------------~~~~~~PdGl~vD~~G~l~Va~~~~g~V  251 (319)
T d2dg1a1         202 HRIALEDDGVTIQPFGATIPYY------------------------------FTGHEGPDSCCIDSDDNLYVAMYGQGRV  251 (319)
T ss_dssp             EEEEECTTSSSEEEEEEEEEEE------------------------------CCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             EEEEEcCCCceeccccceeeec------------------------------cCCccceeeeeEcCCCCEEEEEcCCCEE
Confidence            999876432 211111000000                              0111125679999999988888889999


Q ss_pred             EEEEeCCCCcceeeeeec----CcccEEEEEEeecCCCEEEEEe
Q 010296          447 RLWAIESETKDIQPLYNL----PLVGFVNSLAFAKSGQFLIAGV  486 (513)
Q Consensus       447 ~vwd~~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~~l~~~~  486 (513)
                      .+|+- .+ +.+..+...    .+...+++++|.|++..|++++
T Consensus       252 ~~~~p-~G-~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         252 LVFNK-RG-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEECT-TS-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             EEECC-CC-cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            99995 44 333333221    1233578999999888777763

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.06  E-value=3.7e-07  Score=81.60  Aligned_cols=231  Identities=10%  Similarity=0.076  Sum_probs=149.0

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG  238 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  238 (513)
                      ...+-.++|.++|++.++-...+.|..|+..+......+                   .........|+|+++|+++++.
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-------------------~~~~~~p~gla~~~dG~l~va~   99 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-------------------VSHKANPAAIKIHKDGRLFVCY   99 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-------------------ECSSSSEEEEEECTTSCEEEEE
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-------------------eCCCCCeeEEEECCCCCEEEEe
Confidence            344578999999997778778899999998776544322                   1233457899999999988775


Q ss_pred             eC----CCcEEEEeCCCcceeeeccC--cCCCeEEEEEecCCCeEEEEeC------CCcEEEEeCCCCceeEEeecccCC
Q 010296          239 GL----DRHIHLWDTRIQEHIQAFPG--HRGPVSCLTFRQGTSELFSGSF------DRTVKIWNAEDRAYISTLFGHQSE  306 (513)
Q Consensus       239 ~~----dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~  306 (513)
                      ..    .+.|...+............  -....+.+++.++|++.++...      .+.+..++.... .+..+...-..
T Consensus       100 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~  178 (319)
T d2dg1a1         100 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISV  178 (319)
T ss_dssp             CTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESS
T ss_pred             cCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccce
Confidence            43    23455666555544333321  2345788999999986665432      234555655443 33333333445


Q ss_pred             eEEEEeeCCCe-EE-EEeCCCcEEEEecCCCeee---------EEecCCCCeeEEEeecCCeE-EEEeCCCCEEEEecCC
Q 010296          307 VLTIDCLRKER-VL-TVGRDRSMQLWKVPEESRL---------VFRAPASSLECCCFISNDEF-LSGSDDGSIELWSLLR  374 (513)
Q Consensus       307 v~~~~~~~~~~-~~-~~~~d~~i~iwd~~~~~~~---------~~~~~~~~v~~~~~~~~~~~-~~~~~dg~i~iwd~~~  374 (513)
                      .+.++|++++. ++ +-+..+.|+.|++......         ...........+++..+|.| ++....+.|.+|+. .
T Consensus       179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~  257 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-R  257 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-T
T ss_pred             eeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-C
Confidence            68899999874 44 4456789999988643211         11122234567899999975 46667899999995 7


Q ss_pred             CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296          375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA  441 (513)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  441 (513)
                      ++.+..+......                               ..+...+++++|.+++..+++.+
T Consensus       258 G~~l~~i~~P~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         258 GYPIGQILIPGRD-------------------------------EGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             SCEEEEEECTTGG-------------------------------GTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CcEEEEEeCCCcC-------------------------------CCcCceeeeEEEeCCCCEEEEEc
Confidence            8888877643211                               22233478999999887776654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=9.7e-08  Score=90.16  Aligned_cols=161  Identities=7%  Similarity=0.010  Sum_probs=100.6

Q ss_pred             CCeEEEEECCCCCeEEEEe---------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296          160 QSVTAVALSEDDSKGFSAS---------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS  230 (513)
Q Consensus       160 ~~V~~~~~s~~~~~l~t~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  230 (513)
                      -.+....||||+++|+...         ..+.+.+||+.++......                 ........+....|||
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~-----------------~~~~~~~~l~~~~wSP  123 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD-----------------PPEVSNAKLQYAGWGP  123 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC-----------------CTTCCSCCCSBCCBCS
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeecc-----------------CccCCccccceeeecc
Confidence            3577889999999988764         3577889999887754321                 0112233456688999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccC-cCC-----------------CeEEEEEecCCCeEEEEeCC-Cc------
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPG-HRG-----------------PVSCLTFRQGTSELFSGSFD-RT------  285 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~-----------------~v~~~~~~~~~~~l~~~~~d-g~------  285 (513)
                      +|+.||... ++.|.+.+..++..++.... ...                 .-.++-|||||++|+....| ..      
T Consensus       124 DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         124 KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence            999998876 67899998877765544321 111                 12577899999999876432 22      


Q ss_pred             ---------------------------EEEEeCCCCceeEEee------cccCCeEEEEeeCCCeEEEEeC--C---CcE
Q 010296          286 ---------------------------VKIWNAEDRAYISTLF------GHQSEVLTIDCLRKERVLTVGR--D---RSM  327 (513)
Q Consensus       286 ---------------------------i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~--d---~~i  327 (513)
                                                 +.++|+.++.......      ....-+..+.|.+++.+++...  +   ..|
T Consensus       203 ~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i  282 (465)
T d1xfda1         203 PTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSIL  282 (465)
T ss_dssp             CCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEE
T ss_pred             ccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceE
Confidence                                       3444444332211110      0111356788988887664432  2   357


Q ss_pred             EEEecCCCeee
Q 010296          328 QLWKVPEESRL  338 (513)
Q Consensus       328 ~iwd~~~~~~~  338 (513)
                      .++|..++...
T Consensus       283 ~~~d~~tg~~~  293 (465)
T d1xfda1         283 TLCDATTGVCT  293 (465)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEcCCCCcEE
Confidence            77888877655

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=9.6e-07  Score=76.72  Aligned_cols=216  Identities=12%  Similarity=0.067  Sum_probs=125.4

Q ss_pred             cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC---cEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE
Q 010296          243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR---TVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL  319 (513)
Q Consensus       243 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  319 (513)
                      .|.|.|....... .+..+...+...+|||||+.|+......   .+.+.+..++... .+..+........|+|++..+
T Consensus        20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence            5777776644433 3444667788999999999998654433   4677777665543 444577888899999998544


Q ss_pred             E-Ee-CCCcEEE--EecCCCeeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEE--ecCCCCeeEEeecCCCcccCC
Q 010296          320 T-VG-RDRSMQL--WKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELW--SLLRKKPVYIVKNAHPLLDGL  391 (513)
Q Consensus       320 ~-~~-~d~~i~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~  391 (513)
                      + .. ..+...+  +.....................+++.+.  +++...+|...||  ++..+.....           
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~-----------  166 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-----------  166 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC-----------
T ss_pred             eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceee-----------
Confidence            3 22 3333333  3333333333333344444455666553  4455556654444  4433322111           


Q ss_pred             CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC-CcEEEEEeCCCCcceeeeeecCcccEE
Q 010296          392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN-GSVRLWAIESETKDIQPLYNLPLVGFV  470 (513)
Q Consensus       392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~v  470 (513)
                                                 ...........|+|+++.++..+.+ +...+|-........+.+.   ..+..
T Consensus       167 ---------------------------~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~  216 (269)
T d2hqsa1         167 ---------------------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS---STFLD  216 (269)
T ss_dssp             ---------------------------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC---CSSSC
T ss_pred             ---------------------------ecccccccccccccccceeEEEeecCCceeeeEeecccccceEee---cCccc
Confidence                                       1112237778999999988876544 4555555544422333222   34455


Q ss_pred             EEEEeecCCCEEEEEecCC--CcccccccCCCc
Q 010296          471 NSLAFAKSGQFLIAGVGQE--PRLGRWGHLPAA  501 (513)
Q Consensus       471 ~~v~~sp~~~~l~~~~~~d--g~v~~W~~~~~~  501 (513)
                      ....|||||++|+..+...  ..|.+|++..+.
T Consensus       217 ~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         217 ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             EEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             cceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            6778999999988664333  456777765543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=9.3e-07  Score=83.28  Aligned_cols=136  Identities=10%  Similarity=0.040  Sum_probs=90.0

Q ss_pred             EECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe------
Q 010296          166 ALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG------  239 (513)
Q Consensus       166 ~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------  239 (513)
                      .|.+++.++.. ..+|.|.+|++.+++....+..                .......+....||||+++|+...      
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~----------------~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~   85 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEG----------------KKIESLRAIRYEISPDREYALFSYNVEPIY   85 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECT----------------TTTTTTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcC----------------ccccccccceeEECCCCCeEEEEEccccee
Confidence            57788776654 4578899999988765332210                011122466788999999988764      


Q ss_pred             ---CCCcEEEEeCCCcceeeec--cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee-cccCC-------
Q 010296          240 ---LDRHIHLWDTRIQEHIQAF--PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF-GHQSE-------  306 (513)
Q Consensus       240 ---~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~-------  306 (513)
                         ..+.+.++|+.++......  ......+....|+|+|+.|+-.. ++.|.+.+..++..++... +....       
T Consensus        86 r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d  164 (465)
T d1xfda1          86 QHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD  164 (465)
T ss_dssp             SSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred             EeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccc
Confidence               3578899999988754332  23344566789999999988765 6788999887766554332 11111       


Q ss_pred             ----------eEEEEeeCCCeEE
Q 010296          307 ----------VLTIDCLRKERVL  319 (513)
Q Consensus       307 ----------v~~~~~~~~~~~~  319 (513)
                                -.++-|+|+|+.+
T Consensus       165 ~vyeee~~~~~~a~~WSPDgk~i  187 (465)
T d1xfda1         165 WLYEEEILKTHIAHWWSPDGTRL  187 (465)
T ss_dssp             HHHHHTTSSSSEEEEECTTSSEE
T ss_pred             hhhhhhhccccceEEECCCCCeE
Confidence                      1467799998544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.74  E-value=2.5e-05  Score=68.43  Aligned_cols=222  Identities=10%  Similarity=0.026  Sum_probs=142.4

Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec-
Q 010296          225 ALAVSSDG-RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG-  302 (513)
Q Consensus       225 ~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-  302 (513)
                      +..|++.. .+..+=-..+.|..||..+++.. .+. ....+.++++.+++.++++ +.+ .|.++|..+++....... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            45688754 44444446788999999887653 232 3457889999999876665 444 589999998875433221 


Q ss_pred             ---ccCCeEEEEeeCCCeEEEEeC-----CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEec
Q 010296          303 ---HQSEVLTIDCLRKERVLTVGR-----DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSL  372 (513)
Q Consensus       303 ---~~~~v~~~~~~~~~~~~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~  372 (513)
                         ....++.+.+.++|++..+..     .+.-.+|.+..+..............+++++++.  +++-+..+.|..|++
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~  177 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL  177 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeee
Confidence               122467888999998886653     2345566666665554444445567889999885  456667788888886


Q ss_pred             CCCCe-----eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296          373 LRKKP-----VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR  447 (513)
Q Consensus       373 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~  447 (513)
                      .....     ...+...                                  .........+++..+|++.++.-..|.|.
T Consensus       178 d~~~~~~~~~~~~~~~~----------------------------------~~~~g~pdG~~vD~~GnlWva~~~~g~V~  223 (295)
T d2ghsa1         178 DARTGLPTGKAEVFIDS----------------------------------TGIKGGMDGSVCDAEGHIWNARWGEGAVD  223 (295)
T ss_dssp             CTTTCCBSSCCEEEEEC----------------------------------TTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             cccccccccceEEEecc----------------------------------CcccccccceEEcCCCCEEeeeeCCCceE
Confidence            43211     0111000                                  11223378899999999888777778899


Q ss_pred             EEEeCCCCcceeeeeecCcccEEEEEEee-cCCCEEEEEecC
Q 010296          448 LWAIESETKDIQPLYNLPLVGFVNSLAFA-KSGQFLIAGVGQ  488 (513)
Q Consensus       448 vwd~~~~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~~~~~  488 (513)
                      .|+- .+ +.+..+. +| ...+++++|- |+.+.|++++..
T Consensus       224 ~~dp-~G-~~~~~i~-lP-~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         224 RYDT-DG-NHIARYE-VP-GKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EECT-TC-CEEEEEE-CS-CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EecC-CC-cEeeEec-CC-CCceEEEEEeCCCCCEEEEEECC
Confidence            9995 44 3444333 22 3458999996 787777765444

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.71  E-value=3.9e-06  Score=73.10  Aligned_cols=225  Identities=12%  Similarity=0.043  Sum_probs=125.1

Q ss_pred             EECCC--CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC-C-
Q 010296          166 ALSED--DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL-D-  241 (513)
Q Consensus       166 ~~s~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d-  241 (513)
                      ..+|+  |+.++-.+ +|.|.+.++.++....                    +..+...+...+|||||+.||.... + 
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~~   63 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRGS   63 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEEST
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeCC
Confidence            45788  98888654 4678888999877543                    2345667889999999999986542 2 


Q ss_pred             ----CcEEEEeCCCcceeeeccC------cCCCeEEEEEecCCCeEEEEeCC------CcEEEEeCCCCceeEEeecccC
Q 010296          242 ----RHIHLWDTRIQEHIQAFPG------HRGPVSCLTFRQGTSELFSGSFD------RTVKIWNAEDRAYISTLFGHQS  305 (513)
Q Consensus       242 ----g~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~  305 (513)
                          ..|.++++.+++.......      .........|+|+++.|+.....      ..+...+...+.....   +..
T Consensus        64 ~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  140 (281)
T d1k32a2          64 SLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLG  140 (281)
T ss_dssp             TCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSC
T ss_pred             CCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCC
Confidence                2477888877765543221      22345778999999998865332      2344555544433221   222


Q ss_pred             CeEEEEeeCCCeEEEEeCC------------CcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCC--CEEEEe
Q 010296          306 EVLTIDCLRKERVLTVGRD------------RSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDG--SIELWS  371 (513)
Q Consensus       306 ~v~~~~~~~~~~~~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg--~i~iwd  371 (513)
                      ....+.+.+++.++.....            ....++.....................+.++..+.....++  .|.++|
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  220 (281)
T d1k32a2         141 PATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTD  220 (281)
T ss_dssp             SCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEE
T ss_pred             ccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEe
Confidence            2233333333343332211            11122222222222333334444455555554444444433  455566


Q ss_pred             cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296          372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI  451 (513)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~  451 (513)
                      +.++.... +.....                                      .....|+|+|+.|+... ++.|+++|+
T Consensus       221 ~~g~~~~~-lt~~~~--------------------------------------~~~~~~SpDG~~I~f~~-~~~l~~~d~  260 (281)
T d1k32a2         221 LDGKDLRK-HTSFTD--------------------------------------YYPRHLNTDGRRILFSK-GGSIYIFNP  260 (281)
T ss_dssp             TTSCSCEE-CCCCCS--------------------------------------SCEEEEEESSSCEEEEE-TTEEEEECT
T ss_pred             CCCCceEE-eecCCC--------------------------------------cccccCcCCCCEEEEEe-CCEEEEEEC
Confidence            65554322 211100                                      22246899999887644 678999999


Q ss_pred             CCC
Q 010296          452 ESE  454 (513)
Q Consensus       452 ~~~  454 (513)
                      .++
T Consensus       261 ~~g  263 (281)
T d1k32a2         261 DTE  263 (281)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            887

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.57  E-value=4.6e-05  Score=66.66  Aligned_cols=196  Identities=9%  Similarity=-0.021  Sum_probs=128.0

Q ss_pred             EEEECCCC-CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCC
Q 010296          164 AVALSEDD-SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDR  242 (513)
Q Consensus       164 ~~~~s~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  242 (513)
                      +..|++.. .++.+=-..+.|..||..++.....                     .....+.++++.++|.++++ +.+ 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~---------------------~~~~~~~~i~~~~dg~l~va-~~~-   78 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVH---------------------ALPFMGSALAKISDSKQLIA-SDD-   78 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE---------------------ECSSCEEEEEEEETTEEEEE-ETT-
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE---------------------ECCCCcEEEEEecCCCEEEE-EeC-
Confidence            45677644 4444555678899999888764321                     12345889999999877765 444 


Q ss_pred             cEEEEeCCCcceeeeccC----cCCCeEEEEEecCCCeEEEEeC----CCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296          243 HIHLWDTRIQEHIQAFPG----HRGPVSCLTFRQGTSELFSGSF----DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR  314 (513)
Q Consensus       243 ~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  314 (513)
                      .|.++|..+++.......    ....++.+.+.|+|++.++...    .+.-.+|.+..++...... .-...+.+.|++
T Consensus        79 gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~  157 (295)
T d2ghsa1          79 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSP  157 (295)
T ss_dssp             EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECT
T ss_pred             ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecC
Confidence            588999998875433221    1235788999999987665432    2345667666665444433 344567899999


Q ss_pred             CCe-EE-EEeCCCcEEEEecCCCe------eeE---EecCCCCeeEEEeecCCeEEEEe-CCCCEEEEecCCCCeeEEee
Q 010296          315 KER-VL-TVGRDRSMQLWKVPEES------RLV---FRAPASSLECCCFISNDEFLSGS-DDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       315 ~~~-~~-~~~~d~~i~iwd~~~~~------~~~---~~~~~~~v~~~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~  382 (513)
                      ++. ++ +-+..+.|..|++....      ...   ..........+++..+|.|.++. ..+.|..|| ..++.+..+.
T Consensus       158 d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~  236 (295)
T d2ghsa1         158 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYE  236 (295)
T ss_dssp             TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEE
T ss_pred             CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEec
Confidence            874 33 55567889888874321      111   12234457788998998866554 567899999 4688888876


Q ss_pred             cC
Q 010296          383 NA  384 (513)
Q Consensus       383 ~~  384 (513)
                      ..
T Consensus       237 lP  238 (295)
T d2ghsa1         237 VP  238 (295)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.53  E-value=1.1e-05  Score=70.15  Aligned_cols=93  Identities=9%  Similarity=0.061  Sum_probs=64.8

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-C-----CcEEEEeCCCCceeE
Q 010296          227 AVSSD--GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-D-----RTVKIWNAEDRAYIS  298 (513)
Q Consensus       227 ~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~  298 (513)
                      ..+|+  |+.+|..+ ++.|.+.|+.+++.. .+..+.+.+...+|||||+.|+.... +     ..|.++++.+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45788  99888765 567999999988764 45556778899999999999885432 2     247888887776543


Q ss_pred             Eee------cccCCeEEEEeeCCCeEEEE
Q 010296          299 TLF------GHQSEVLTIDCLRKERVLTV  321 (513)
Q Consensus       299 ~~~------~~~~~v~~~~~~~~~~~~~~  321 (513)
                      ...      ..........|+|+++.+..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEE
Confidence            221      12234567889999876644

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.22  E-value=0.00046  Score=62.72  Aligned_cols=120  Identities=14%  Similarity=0.165  Sum_probs=76.0

Q ss_pred             CeEEEEECCCCCeEEEEeCCc-----------eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296          161 SVTAVALSEDDSKGFSASKDG-----------SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS  229 (513)
Q Consensus       161 ~V~~~~~s~~~~~l~t~~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  229 (513)
                      ++.......+|+.++.|+.+.           .+.+||..++.-....     ..           ...|.......++.
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-----~~-----------~~~~~~~~~~~~~~   84 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-----VT-----------VTKHDMFCPGISMD   84 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-----EE-----------ECSCCCSSCEEEEC
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC-----CC-----------CCCcccceeEEEEe
Confidence            344555667888888887531           3778999887643210     00           01222223456788


Q ss_pred             CCCCEEEEEeCC-CcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCC------CcEEEEeCCCCce
Q 010296          230 SDGRYLASGGLD-RHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFD------RTVKIWNAEDRAY  296 (513)
Q Consensus       230 ~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~  296 (513)
                      +++.+++.|+.+ ..+.+||..+......-.. ....-.+++..+++++++.++..      ..+.+||..+.+.
T Consensus        85 ~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          85 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             cCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            999999988755 6899999887654322111 11223456777899988888753      3689999987654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=0.0025  Score=54.03  Aligned_cols=208  Identities=8%  Similarity=-0.019  Sum_probs=134.1

Q ss_pred             hhccCCCeEEEEECCCCCeEEEE-eCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296          155 LLKHRQSVTAVALSEDDSKGFSA-SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR  233 (513)
Q Consensus       155 ~~~h~~~V~~~~~s~~~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  233 (513)
                      +..+...|.+|+|.+..+.|+-. ...+.|+..++........+                   ......+..|++..-+.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~-------------------~~~~~~p~~iAvD~~~~   91 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-------------------RQDLGSPEGIALDHLGR   91 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-------------------CTTCCCEEEEEEETTTT
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE-------------------EeccccccEEEEeccCC
Confidence            34455668899999888777755 45678888888765543322                   11224578899987566


Q ss_pred             EEE-EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC---CcEEEEeCCCCceeEEeecccCCeEE
Q 010296          234 YLA-SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD---RTVKIWNAEDRAYISTLFGHQSEVLT  309 (513)
Q Consensus       234 ~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~  309 (513)
                      .|. +-...+.|.+.++........+......+..+++.|...+|+.....   ..|..-++............-.....
T Consensus        92 ~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~g  171 (263)
T d1npea_          92 TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG  171 (263)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEE
T ss_pred             eEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccce
Confidence            555 44456799999987655433333344678999999988887754332   23555566544333333333345678


Q ss_pred             EEeeCC-CeEEEE-eCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEee
Q 010296          310 IDCLRK-ERVLTV-GRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVK  382 (513)
Q Consensus       310 ~~~~~~-~~~~~~-~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~  382 (513)
                      +++.+. ++++.+ ...+.|...++.................+++. ++. +++-...+.|...|..+++.+..+.
T Consensus       172 laiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            888764 456544 45788999998776554333333345677776 455 5566677889999998888776664

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.94  E-value=0.00028  Score=62.72  Aligned_cols=190  Identities=13%  Similarity=0.078  Sum_probs=119.7

Q ss_pred             EEEECC---CCCeEEEEe-CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC--CCCEEEE
Q 010296          164 AVALSE---DDSKGFSAS-KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS--DGRYLAS  237 (513)
Q Consensus       164 ~~~~s~---~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s  237 (513)
                      .+++..   ||+||++.. .+++|.+-|+.+.+..+.+                  .......+..+...+  +..|+++
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi------------------~iPn~~~~HG~r~~~~p~T~YV~~  150 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL------------------EIPNAKGIHGLRPQKWPRSNYVFC  150 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE------------------ECSSCCSEEEEEECCSSBCSEEEE
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEE------------------ecCCCCCCceeecccCCCeEEEEc
Confidence            555654   899998765 6889999999998875533                  012233455565544  5557777


Q ss_pred             EeCC------------------CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC----------------
Q 010296          238 GGLD------------------RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD----------------  283 (513)
Q Consensus       238 ~~~d------------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------  283 (513)
                      .+..                  +.+.++|..+.+....+.- .+....+.++++|+++++.+.+                
T Consensus       151 ~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D  229 (459)
T d1fwxa2         151 NGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD  229 (459)
T ss_dssp             EECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred             cCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccce
Confidence            6652                  2367789888887766552 3456678999999998877643                


Q ss_pred             ----------------------CcEEEEeCCC--C-ceeEEeecccCCeEEEEeeCCCeEEE--EeCCCcEEEEecCCCe
Q 010296          284 ----------------------RTVKIWNAED--R-AYISTLFGHQSEVLTIDCLRKERVLT--VGRDRSMQLWKVPEES  336 (513)
Q Consensus       284 ----------------------g~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~d~~i~iwd~~~~~  336 (513)
                                            +.+.+.|.+.  + ..+..+. -......+.++|+|+.+.  +..+.++.++|++.-.
T Consensus       230 ~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~  308 (459)
T d1fwxa2         230 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  308 (459)
T ss_dssp             EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             EEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhh
Confidence                                  1223333332  1 1111222 233356788899996653  3358999999986321


Q ss_pred             e------------eEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecC
Q 010296          337 R------------LVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLL  373 (513)
Q Consensus       337 ~------------~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~  373 (513)
                      .            .......-.....+|...|. +.+---|..|.-|++.
T Consensus       309 ~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         309 AVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             HHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             hhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            1            11222344556678888886 5566789999999984

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=0.0053  Score=51.89  Aligned_cols=197  Identities=10%  Similarity=-0.008  Sum_probs=123.1

Q ss_pred             CcccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEE-eCCCcEEEEeCCCCce
Q 010296          219 QSKHILALAVSSDGRYLASGG-LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSG-SFDRTVKIWNAEDRAY  296 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~  296 (513)
                      +...+..|+|.+..+.|+... ..+.|+..++........+......+.++++..-+..|+.+ ...+.|.+.++.....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            344578899998777666554 56789888887665555554444678999998767777644 5577999999976654


Q ss_pred             eEEeecccCCeEEEEeeCC-CeEEEEe-CCC--cEEEEecCCCeeeEE-ecCCCCeeEEEeecCC-eE-EEEeCCCCEEE
Q 010296          297 ISTLFGHQSEVLTIDCLRK-ERVLTVG-RDR--SMQLWKVPEESRLVF-RAPASSLECCCFISND-EF-LSGSDDGSIEL  369 (513)
Q Consensus       297 ~~~~~~~~~~v~~~~~~~~-~~~~~~~-~d~--~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~-~~-~~~~~dg~i~i  369 (513)
                      ...+......+..+++.|. +.++... ..+  .|...++.......+ .........+++.+.+ +| ++-...+.|..
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~  193 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEE
Confidence            3333334467889999885 4555332 222  355556655443332 3334556788887655 44 45556788888


Q ss_pred             EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296          370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW  449 (513)
Q Consensus       370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw  449 (513)
                      .++........+....                                   +   ...|++. ++.+..+-...+.|...
T Consensus       194 ~~~~g~~~~~v~~~~~-----------------------------------~---P~~lav~-~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         194 LNPAQPGRRKVLEGLQ-----------------------------------Y---PFAVTSY-GKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             EETTEEEEEEEEECCC-----------------------------------S---EEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EECCCCCeEEEECCCC-----------------------------------C---cEEEEEE-CCEEEEEECCCCEEEEE
Confidence            8886654433332111                                   0   4567775 34444454566788888


Q ss_pred             EeCCC
Q 010296          450 AIESE  454 (513)
Q Consensus       450 d~~~~  454 (513)
                      |..++
T Consensus       235 ~~~~g  239 (263)
T d1npea_         235 DLAIS  239 (263)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            88776

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.83  E-value=0.0037  Score=59.60  Aligned_cols=200  Identities=9%  Similarity=-0.042  Sum_probs=107.4

Q ss_pred             eEEEEe-CCceEEEEeC-CCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296          173 KGFSAS-KDGSILHWDV-SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR  250 (513)
Q Consensus       173 ~l~t~~-~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~  250 (513)
                      .|+.++ .++.|.-.|. ++|+.+..+.+.........        ......-..+++.  +..|+.++.+|.+.-.|.+
T Consensus        64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~--------~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~  133 (571)
T d2ad6a1          64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAV--------MCCDVVDRGLAYG--AGQIVKKQANGHLLALDAK  133 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGG--------CTTCSCCCCCEEE--TTEEEEECTTSEEEEEETT
T ss_pred             EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccc--------cccCcCCCcceee--CCeEEEEeCCCcEEeeehh
Confidence            344444 4678888887 46887765532211111000        0000000123443  3467788889999999999


Q ss_pred             CcceeeeccCc---C-CCeEEEEEecCCCeEEEEe------CCCcEEEEeCCCCceeEEeeccc----------------
Q 010296          251 IQEHIQAFPGH---R-GPVSCLTFRQGTSELFSGS------FDRTVKIWNAEDRAYISTLFGHQ----------------  304 (513)
Q Consensus       251 ~~~~~~~~~~~---~-~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~----------------  304 (513)
                      +|+.+......   . ..++.--.-.++ .++.+.      ..|.|+.+|+.+++.+..+....                
T Consensus       134 tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  212 (571)
T d2ad6a1         134 TGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP  212 (571)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             hhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccccccccccc
Confidence            99886554321   1 111111111133 344443      36789999999999987654211                


Q ss_pred             ---------------------CCe-EEEEeeCCC-eEEEEeC----------------CCcEEEEecCCCeeeE-EecCC
Q 010296          305 ---------------------SEV-LTIDCLRKE-RVLTVGR----------------DRSMQLWKVPEESRLV-FRAPA  344 (513)
Q Consensus       305 ---------------------~~v-~~~~~~~~~-~~~~~~~----------------d~~i~iwd~~~~~~~~-~~~~~  344 (513)
                                           ..+ ...++.+.. .++.+..                ...+.-.|+.+++... +....
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~  292 (571)
T d2ad6a1         213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP  292 (571)
T ss_dssp             GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred             ccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccC
Confidence                                 111 112333432 2322222                2456777888887763 22211


Q ss_pred             ---------CCeeEEEeecCCe----EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          345 ---------SSLECCCFISNDE----FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       345 ---------~~v~~~~~~~~~~----~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                               .......+..++.    ++.++.+|.+.++|..+++++...+.
T Consensus       293 ~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~  344 (571)
T d2ad6a1         293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             TCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             ccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeecc
Confidence                     1122222333443    45888999999999999999876543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.80  E-value=0.00044  Score=61.47  Aligned_cols=183  Identities=9%  Similarity=-0.001  Sum_probs=109.1

Q ss_pred             EEEEeCCCcEEEEeCCCCceeEEeecc---------------------------------------cCCe--EEEEeeC-
Q 010296          277 LFSGSFDRTVKIWNAEDRAYISTLFGH---------------------------------------QSEV--LTIDCLR-  314 (513)
Q Consensus       277 l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------------------------~~~v--~~~~~~~-  314 (513)
                      +.+|+..|.|+|+-+.+++.+..+.-.                                       .+..  ..+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            557888999999988887776654210                                       0000  1334433 


Q ss_pred             --CCeEE-EE-eCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe---EEEEeCC------------------CCE
Q 010296          315 --KERVL-TV-GRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE---FLSGSDD------------------GSI  367 (513)
Q Consensus       315 --~~~~~-~~-~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~---~~~~~~d------------------g~i  367 (513)
                        ||+++ +. ..+..|.+.|+.+.+..  ........+..+...+..+   ++.++..                  +.+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              56555 33 36888999999988764  3344455666666655432   3344432                  235


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC----
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN----  443 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d----  443 (513)
                      .++|..+.+....+.....                                      +..+.++++|+++++.+.+    
T Consensus       176 t~ID~~tm~V~~QV~V~g~--------------------------------------ld~~~~s~dGK~af~TsyNSE~g  217 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGN--------------------------------------LDNCDADYEGKWAFSTSYNSEKG  217 (459)
T ss_dssp             EEEETTTTEEEEEEEESSC--------------------------------------CCCEEECSSSSEEEEEESCTTCC
T ss_pred             EEEecCCceEEEEeeeCCC--------------------------------------hhccccCCCCCEEEEEeccccCC
Confidence            6778777776666543221                                      4456677777766665532    


Q ss_pred             ----------------------------------CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCC
Q 010296          444 ----------------------------------GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQE  489 (513)
Q Consensus       444 ----------------------------------g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~d  489 (513)
                                                        +.+.+-|..... ....+..++.......+.++|||+++++++.-+
T Consensus       218 ~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~-~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs  296 (459)
T d1fwxa2         218 MTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA-SSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS  296 (459)
T ss_dssp             SSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG---CSSEEEEEEESSCCCEEECTTSSEEEEECTTS
T ss_pred             cchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccC-CcceeEEEecCCCCCceEECCCCCEEEEeCCcC
Confidence                                              223444443210 011111222233456789999999999998899


Q ss_pred             CcccccccC
Q 010296          490 PRLGRWGHL  498 (513)
Q Consensus       490 g~v~~W~~~  498 (513)
                      .+|.+.|+.
T Consensus       297 ~tVSViD~~  305 (459)
T d1fwxa2         297 PTVTVLDVT  305 (459)
T ss_dssp             SBEEEEEGG
T ss_pred             CcEEEEEeh
Confidence            999999875

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.76  E-value=0.0042  Score=59.07  Aligned_cols=202  Identities=11%  Similarity=0.090  Sum_probs=110.2

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI  251 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~  251 (513)
                      ..|+.++.++.|.-.|..+|+.+..+.+..........     ......   ..++..  +..++.+..++.|.-.|..+
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~-----~~~~~~---~~~~~~--~~~v~~~~~~g~l~Alda~t  136 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTS-----CCDAVN---RGVALW--GDKVYVGTLDGRLIALDAKT  136 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGC-----TTCSCC---CCCEEE--BTEEEEECTTSEEEEEETTT
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccc-----cccccc---cCccee--CCeEEEEeCCCEEEEEECCC
Confidence            45677778899999999999988765322111100000     000001   111221  44678888899999999999


Q ss_pred             cceeeeccCcCC--C--eEEEEEecCCCeEEEEe------CCCcEEEEeCCCCceeEEeecc------------------
Q 010296          252 QEHIQAFPGHRG--P--VSCLTFRQGTSELFSGS------FDRTVKIWNAEDRAYISTLFGH------------------  303 (513)
Q Consensus       252 ~~~~~~~~~~~~--~--v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~------------------  303 (513)
                      ++.+..+..+..  .  ++..-.--++ .++.+.      ..|.|.-+|..+++.+..+..-                  
T Consensus       137 G~~~w~~~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~  215 (560)
T d1kv9a2         137 GKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK  215 (560)
T ss_dssp             CCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred             CcEEeccCccCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccc
Confidence            988766543211  0  1100000122 333332      2367999999999998876421                  


Q ss_pred             ------------cCCe-EEEEeeCCCeEE-EEeC-------------------CCcEEEEecCCCeeeE-EecCCCC---
Q 010296          304 ------------QSEV-LTIDCLRKERVL-TVGR-------------------DRSMQLWKVPEESRLV-FRAPASS---  346 (513)
Q Consensus       304 ------------~~~v-~~~~~~~~~~~~-~~~~-------------------d~~i~iwd~~~~~~~~-~~~~~~~---  346 (513)
                                  ...+ ..+++.+...++ .+..                   ...|.-.|+.+++... +......   
T Consensus       216 ~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd  295 (560)
T d1kv9a2         216 TWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD  295 (560)
T ss_dssp             TCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred             cccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEecccccccc
Confidence                        1111 123344433222 2110                   2346667778877663 2221111   


Q ss_pred             ------eeEEEeecCCe----EEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296          347 ------LECCCFISNDE----FLSGSDDGSIELWSLLRKKPVYIVKNA  384 (513)
Q Consensus       347 ------v~~~~~~~~~~----~~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (513)
                            ..-+.+..++.    ++.+..+|.+.++|..+++++......
T Consensus       296 ~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~  343 (560)
T d1kv9a2         296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFG  343 (560)
T ss_dssp             CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred             ccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccc
Confidence                  11122223442    557889999999999999998776543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.72  E-value=0.0021  Score=61.34  Aligned_cols=151  Identities=10%  Similarity=0.038  Sum_probs=87.2

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe------CCCcEE
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG------LDRHIH  245 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~  245 (513)
                      ..|+.++.||.|.-.|..+++.+..........          .......+     .-.++ .++.+.      ..|.|+
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~----------~~~~t~~p-----~v~~~-~vivg~~~~~~~~~G~v~  179 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKV----------GSTLTQAP-----FVAKD-TVLMGCSGAELGVRGAVN  179 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGG----------TCBCCSCC-----EEETT-EEEEECBCGGGTCCCEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhcccccccccc----------ccceeecC-----eEeCC-eEEEeeccccccccCcEE
Confidence            467788889999999999998765431100000          00001111     01123 344443      367899


Q ss_pred             EEeCCCcceeeeccCc-------------------------------------CCCe-EEEEEecCCCeEEEEeC-----
Q 010296          246 LWDTRIQEHIQAFPGH-------------------------------------RGPV-SCLTFRQGTSELFSGSF-----  282 (513)
Q Consensus       246 vwd~~~~~~~~~~~~~-------------------------------------~~~v-~~~~~~~~~~~l~~~~~-----  282 (513)
                      -+|+.+|+.+-.+...                                     .+.+ ...++.+....++.+..     
T Consensus       180 a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~  259 (571)
T d2ad6a1         180 AFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPW  259 (571)
T ss_dssp             EEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCS
T ss_pred             EEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCc
Confidence            9999999987654311                                     1112 23466666666665443     


Q ss_pred             -----------CCcEEEEeCCCCceeEEeecccCCeE---------EEEeeCCCe----EEEEeCCCcEEEEecCCCeee
Q 010296          283 -----------DRTVKIWNAEDRAYISTLFGHQSEVL---------TIDCLRKER----VLTVGRDRSMQLWKVPEESRL  338 (513)
Q Consensus       283 -----------dg~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~~~~~~----~~~~~~d~~i~iwd~~~~~~~  338 (513)
                                 ...|...|+++++.+..+......+.         ......++.    ++..+.+|.++++|..+++.+
T Consensus       260 ~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         260 NETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             CGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence                       34678889999998877764332222         111222332    346778999999998888765

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.72  E-value=0.0053  Score=58.60  Aligned_cols=201  Identities=8%  Similarity=-0.019  Sum_probs=106.9

Q ss_pred             CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010296          172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI  251 (513)
Q Consensus       172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~  251 (513)
                      ..|++++.++.|.-+|..+|+.+..+.+..........     .....   -..+.+.  ...++.++.++.+.-.|..+
T Consensus        78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~-----~~~~~---~~g~~~~--~~~v~~~t~~g~l~alda~t  147 (573)
T d1kb0a2          78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKG-----CCDVV---NRGVALW--KGKVYVGAWDGRLIALDAAT  147 (573)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGS-----SSCSC---CCCCEEE--TTEEEEECTTSEEEEEETTT
T ss_pred             CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCccccccc-----ccccc---cccceEE--CCcEEEEecccceeeecccc
Confidence            35677788899999999999988765322111100000     00000   0112222  33567778889999899999


Q ss_pred             cceeeeccC--cC-CCe--EEEEEecCCCeEEEEeC------CCcEEEEeCCCCceeEEeeccc----------------
Q 010296          252 QEHIQAFPG--HR-GPV--SCLTFRQGTSELFSGSF------DRTVKIWNAEDRAYISTLFGHQ----------------  304 (513)
Q Consensus       252 ~~~~~~~~~--~~-~~v--~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~----------------  304 (513)
                      |+.+.....  +. ..+  +..-.-.. ..+++++.      .|.|+.+|..+|+.+..+....                
T Consensus       148 G~~~W~~~~~~~~~~~~~~~~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  226 (573)
T d1kb0a2         148 GKEVWHQNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA  226 (573)
T ss_dssp             CCEEEEEETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred             ccceecccCccCCcceEEeecceEEEe-ccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccc
Confidence            988754432  11 111  10000112 33444432      4689999999999987753211                


Q ss_pred             ---------------CCe-EEEEeeCCC-eEEEEe-------------------CCCcEEEEecCCCeeeEE-ecC----
Q 010296          305 ---------------SEV-LTIDCLRKE-RVLTVG-------------------RDRSMQLWKVPEESRLVF-RAP----  343 (513)
Q Consensus       305 ---------------~~v-~~~~~~~~~-~~~~~~-------------------~d~~i~iwd~~~~~~~~~-~~~----  343 (513)
                                     ..+ ...++.+.. .++...                   ....|.-.|+.+++.... ...    
T Consensus       227 ~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~  306 (573)
T d1kb0a2         227 RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDN  306 (573)
T ss_dssp             TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC
T ss_pred             cccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccc
Confidence                           111 112333332 222211                   012355566666665522 111    


Q ss_pred             -----CCCeeEEEeecCCe----EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          344 -----ASSLECCCFISNDE----FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       344 -----~~~v~~~~~~~~~~----~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                           ...........++.    ++.++.+|.+.++|..+++.+.....
T Consensus       307 wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~  355 (573)
T d1kb0a2         307 WDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF  355 (573)
T ss_dssp             SCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred             ccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccc
Confidence                 11222223333442    56888999999999999999887654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.68  E-value=0.004  Score=59.66  Aligned_cols=153  Identities=11%  Similarity=0.062  Sum_probs=89.3

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC------CCcE
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL------DRHI  244 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i  244 (513)
                      ..+++.++.|+.|.-.|..+++.+..+........          ......++    +  -+..++++..      .|.|
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~----------~~~t~~P~----v--~~~~vivg~~~~e~~~~G~v  184 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVG----------STLTIAPY----V--VKDKVIIGSSGAELGVRGYL  184 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT----------CBCCSCCE----E--ETTEEEECCBCGGGTCCCEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccc----------cccccCCc----E--ECCeEEEeeccccccccCce
Confidence            34688899999999999999988765421110000          00000011    1  1334555432      4889


Q ss_pred             EEEeCCCcceeeeccCc-------------------------------------CCCe-EEEEEecCCCeEEEEeC----
Q 010296          245 HLWDTRIQEHIQAFPGH-------------------------------------RGPV-SCLTFRQGTSELFSGSF----  282 (513)
Q Consensus       245 ~vwd~~~~~~~~~~~~~-------------------------------------~~~v-~~~~~~~~~~~l~~~~~----  282 (513)
                      +-+|+.+|+.+-.+...                                     ...+ ..+++.+...+++.+..    
T Consensus       185 ~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p  264 (596)
T d1w6sa_         185 TAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAP  264 (596)
T ss_dssp             EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC
T ss_pred             EEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccc
Confidence            99999999987654211                                     0111 23466666666665533    


Q ss_pred             ------------CCcEEEEeCCCCceeEEeecccC---------CeEEEEe-eCCC----eEEEEeCCCcEEEEecCCCe
Q 010296          283 ------------DRTVKIWNAEDRAYISTLFGHQS---------EVLTIDC-LRKE----RVLTVGRDRSMQLWKVPEES  336 (513)
Q Consensus       283 ------------dg~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~-~~~~----~~~~~~~d~~i~iwd~~~~~  336 (513)
                                  ...|...|+.+++.+..+.....         .+..+.. ..++    .++....+|.++++|..+++
T Consensus       265 ~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~  344 (596)
T d1w6sa_         265 WNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA  344 (596)
T ss_dssp             SCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             cccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence                        23588889999998876653222         1112221 1233    24467788999999998887


Q ss_pred             eeE
Q 010296          337 RLV  339 (513)
Q Consensus       337 ~~~  339 (513)
                      .+.
T Consensus       345 ~i~  347 (596)
T d1w6sa_         345 LVS  347 (596)
T ss_dssp             EEE
T ss_pred             eee
Confidence            663

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.59  E-value=0.01  Score=56.71  Aligned_cols=204  Identities=7%  Similarity=-0.030  Sum_probs=109.9

Q ss_pred             CCCeEEEEeCCceEEEEeC-CCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC----CCEEEEEeCCCcE
Q 010296          170 DDSKGFSASKDGSILHWDV-SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD----GRYLASGGLDRHI  244 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~dg~i  244 (513)
                      ++.++++++..+.|...|. .+++.+..+.+........        .......-..+++.++    ..+++.++.|+.|
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~--------~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l  133 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARA--------VACCDLVNRGLAYWPGDGKTPALILKTQLDGNV  133 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGG--------GCSSCSCCCCCEEECCCSSSCCEEEEECTTSEE
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCccccc--------ccccccccceeEEecCCCCCceEEEEEeCCCCe
Confidence            3443444455567777776 5777776553221110000        0000001123444332    3478889999999


Q ss_pred             EEEeCCCcceeeeccCc---CC-CeEE-EEEecCCCeEEEEeC------CCcEEEEeCCCCceeEEeeccc---------
Q 010296          245 HLWDTRIQEHIQAFPGH---RG-PVSC-LTFRQGTSELFSGSF------DRTVKIWNAEDRAYISTLFGHQ---------  304 (513)
Q Consensus       245 ~vwd~~~~~~~~~~~~~---~~-~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~---------  304 (513)
                      .-.|..+|+.+..+...   .. .++. -.+.  +..++.+..      .|.|+-+|+.+|+.+.++....         
T Consensus       134 ~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~--~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~  211 (596)
T d1w6sa_         134 AALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLAS  211 (596)
T ss_dssp             EEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred             EeeccccCceeccccccccccccccccCCcEE--CCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccc
Confidence            99999999988766421   11 1111 1111  234555443      4899999999999988764211         


Q ss_pred             ----------------------------CCe-EEEEeeCC-CeEEEEeC----------------CCcEEEEecCCCeee
Q 010296          305 ----------------------------SEV-LTIDCLRK-ERVLTVGR----------------DRSMQLWKVPEESRL  338 (513)
Q Consensus       305 ----------------------------~~v-~~~~~~~~-~~~~~~~~----------------d~~i~iwd~~~~~~~  338 (513)
                                                  ..+ ..+++.+. +.++.+..                ...|.-.|+.+++..
T Consensus       212 ~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~  291 (596)
T d1w6sa_         212 DFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK  291 (596)
T ss_dssp             TTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE
T ss_pred             ccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccc
Confidence                                        001 12233333 23333321                345777888888876


Q ss_pred             E-EecCC---------CCeeEEEe-ecCCe----EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          339 V-FRAPA---------SSLECCCF-ISNDE----FLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       339 ~-~~~~~---------~~v~~~~~-~~~~~----~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      . +....         .....+.. ..++.    ++....+|.+.++|..+++++...+.
T Consensus       292 W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~  351 (596)
T d1w6sa_         292 FGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKL  351 (596)
T ss_dssp             EEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             ccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccc
Confidence            3 22211         11111211 22332    66788999999999999998876553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.54  E-value=0.0055  Score=58.49  Aligned_cols=55  Identities=11%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             CCCEEEEecCCCcEEEEEeCCCCcceeeeeecC-cccEEEEEEeecCCC-EEEEEecCCC
Q 010296          433 GSDLAASGAGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFAKSGQ-FLIAGVGQEP  490 (513)
Q Consensus       433 ~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~-~l~~~~~~dg  490 (513)
                      .+.++++|+.||.++.+|..+++.....-.... ...+   +.|..+|+ |+++.+|.-+
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQYv~v~~G~gg  543 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQYVSVAVGWGG  543 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEEECCCH
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEEeCCCc
Confidence            567888999999999999999944332221111 1223   45566886 6666655543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.47  E-value=0.022  Score=47.70  Aligned_cols=224  Identities=11%  Similarity=0.161  Sum_probs=134.6

Q ss_pred             CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeec
Q 010296          179 KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF  258 (513)
Q Consensus       179 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  258 (513)
                      ....|.|.|+........-                      .-.--+.-.+|..+.||.-+ ..++.++|+++.+.+..+
T Consensus        43 ~~~~VvIidl~n~~~~~Rr----------------------pi~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~   99 (327)
T d1utca2          43 EQAQVVIIDMNDPSNPIRR----------------------PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH   99 (327)
T ss_dssp             TEEEEEEEETTSTTSCEEE----------------------ECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEECCCCCcceec----------------------ccchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceE
Confidence            3457888898765533211                      11123455788888888766 568999999999988877


Q ss_pred             cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-ceeEEeeccc----CCeEEEEeeCCCeEE-EEe-------CCC
Q 010296          259 PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-AYISTLFGHQ----SEVLTIDCLRKERVL-TVG-------RDR  325 (513)
Q Consensus       259 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~-~~~-------~d~  325 (513)
                      . ...+|.--.|-.+. .|+..+ +..|+-|++... .+...+..|.    ..|.....+++.+.+ ..|       -.|
T Consensus       100 ~-~~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G  176 (327)
T d1utca2         100 T-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG  176 (327)
T ss_dssp             E-CSSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred             E-cCCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeE
Confidence            6 34567667776543 444443 457999999543 4555555443    356666666666433 221       247


Q ss_pred             cEEEEecCCCeeeEEecCCCCeeEEEeecCC---eEEE-E---eCCCCEEEEecCCCCe-eEEeecCCCcccCCCCcccC
Q 010296          326 SMQLWKVPEESRLVFRAPASSLECCCFISND---EFLS-G---SDDGSIELWSLLRKKP-VYIVKNAHPLLDGLKNFEQD  397 (513)
Q Consensus       326 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~-~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~  397 (513)
                      .+.+|....+....+.+|......+.+..+.   .+++ +   ...+.++|.++..... -..+..              
T Consensus       177 ~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~k--------------  242 (327)
T d1utca2         177 AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK--------------  242 (327)
T ss_dssp             EEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCC--------------
T ss_pred             EEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcc--------------
Confidence            8899999888877777775544444333222   1221 1   2235666666544210 000000              


Q ss_pred             cCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296          398 EGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE  454 (513)
Q Consensus       398 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~  454 (513)
                        +.          ....+..........++.+|+.-.+++.-+.-|.|++||+.++
T Consensus       243 --k~----------vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg  287 (327)
T d1utca2         243 --KA----------VDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG  287 (327)
T ss_dssp             --EE----------EECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred             --ee----------EEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc
Confidence              00          0000111223344788999998889999999999999999998

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.43  E-value=0.012  Score=52.76  Aligned_cols=116  Identities=12%  Similarity=0.146  Sum_probs=72.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCcceeee--c-cCcCCCeEEEEEecCCCeEEEEeCC-CcEE
Q 010296          223 ILALAVSSDGRYLASGGLDR-----------HIHLWDTRIQEHIQA--F-PGHRGPVSCLTFRQGTSELFSGSFD-RTVK  287 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~  287 (513)
                      +.......+|+.++.|+...           .+.+||+.++.....  . ..|.......++.+++.+++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            34445566889888888531           377999988764321  1 2233344567888999998888765 5899


Q ss_pred             EEeCCCCceeEEeecc-cCCeEEEEeeCCCeEEE-EeCC------CcEEEEecCCCeee
Q 010296          288 IWNAEDRAYISTLFGH-QSEVLTIDCLRKERVLT-VGRD------RSMQLWKVPEESRL  338 (513)
Q Consensus       288 iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~~~d------~~i~iwd~~~~~~~  338 (513)
                      +||..+......-... ...-.+.+..+++++++ ++..      ..+.+||..+..-.
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence            9999887654322111 11223455667776664 4321      46889998876543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.027  Score=47.42  Aligned_cols=212  Identities=11%  Similarity=0.002  Sum_probs=129.0

Q ss_pred             ccCCCeEEEEECCCCCeEEEE-eCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296          157 KHRQSVTAVALSEDDSKGFSA-SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL  235 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  235 (513)
                      .....+.+|+|++..+.|+-. ...+.|.-.++.........               ..........+..|++.+.+..|
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~---------------~~~~~~~~~~p~glAvD~~~~~l   91 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY---------------DTVISRDIQAPDGLAVDWIHSNI   91 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C---------------EEEECSSCSCCCEEEEETTTTEE
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcce---------------EEEEeCCCCCcceEEEeeccceE
Confidence            455667899999988777755 35566776666532211000               00011222346678887755555


Q ss_pred             EEE-eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe--CCCcEEEEeCCCCceeEEeecccCCeEEEEe
Q 010296          236 ASG-GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS--FDRTVKIWNAEDRAYISTLFGHQSEVLTIDC  312 (513)
Q Consensus       236 ~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  312 (513)
                      ..+ ...+.|.+.++........+.........++++|...+|+...  ..+.|...++............-.....+++
T Consensus        92 Y~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~i  171 (266)
T d1ijqa1          92 YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL  171 (266)
T ss_dssp             EEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEE
T ss_pred             EEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEe
Confidence            544 4567899999987665555555566789999999777776543  3456777777554433333333356688888


Q ss_pred             eCC-CeEEEE-eCCCcEEEEecCCCeeeEE-ecC--CCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296          313 LRK-ERVLTV-GRDRSMQLWKVPEESRLVF-RAP--ASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN  383 (513)
Q Consensus       313 ~~~-~~~~~~-~~d~~i~iwd~~~~~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  383 (513)
                      .+. ++++.+ ...+.|...++........ ...  ......+++..+..+++-..++.|...+..++.....+..
T Consensus       172 D~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         172 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             eccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence            875 456544 5578898888876543322 222  2345677777433355666778888888888876666553

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.41  E-value=0.048  Score=51.85  Aligned_cols=77  Identities=17%  Similarity=0.263  Sum_probs=47.0

Q ss_pred             cCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC-cccEEEEEEeecCCC-EEEEEecCCCccccccc-------CCCcc
Q 010296          432 GGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGH-------LPAAR  502 (513)
Q Consensus       432 ~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~-------~~~~~  502 (513)
                      ..+.++++|+.||.++.+|..+++.....-.... +..+   +.|..+|+ |+++.+|..+.+.+|.-       ....-
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~G~qYv~i~ag~g~~~~~~~g~~~~~~~~~~~g  571 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQG  571 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEEECCCSHHHHHCTHHHHHHTTCCCC
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEEeCCCCccccccccccccccccCCC
Confidence            4567888899999999999999943332221111 1222   56677884 77776666666665531       11222


Q ss_pred             cceEEEecc
Q 010296          503 NGVLVHPIK  511 (513)
Q Consensus       503 ~~~~~~~l~  511 (513)
                      +.++++.|+
T Consensus       572 ~~l~vF~Lp  580 (582)
T d1flga_         572 GSFWVFKLP  580 (582)
T ss_dssp             CEEEEEECC
T ss_pred             CEEEEEeCC
Confidence            456666664

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.33  E-value=0.0066  Score=57.67  Aligned_cols=152  Identities=10%  Similarity=0.125  Sum_probs=85.0

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe------CCCcE
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG------LDRHI  244 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i  244 (513)
                      +..++.+..++.|.-.|..+++.+..........          .......++.   +  ++ .++.+.      ..|.|
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~----------~~~~~~~p~v---~--~~-~vivg~~~~~~~~~G~v  180 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK----------PYSITGAPRV---V--KG-KVIIGNGGAEYGVRGFV  180 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS----------SCBCCSCCEE---E--TT-EEEECCBCTTTCCBCEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCccc----------ceeeeeeeee---e--cC-cccccccceeccccceE
Confidence            3467888889999999999998776441111000          0000000100   0  22 333332      23679


Q ss_pred             EEEeCCCcceeeeccCc------------------------------CCCe-EEEEEecCCCeEEEEeC-----------
Q 010296          245 HLWDTRIQEHIQAFPGH------------------------------RGPV-SCLTFRQGTSELFSGSF-----------  282 (513)
Q Consensus       245 ~vwd~~~~~~~~~~~~~------------------------------~~~v-~~~~~~~~~~~l~~~~~-----------  282 (513)
                      .-+|..+|+.+-.+..-                              ...+ ..+++.+...+++.+..           
T Consensus       181 ~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~  260 (560)
T d1kv9a2         181 SAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRS  260 (560)
T ss_dssp             EEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHS
T ss_pred             EEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCccccccccc
Confidence            99999999887655310                              1112 12456666666554321           


Q ss_pred             --------CCcEEEEeCCCCceeEEeecccCCeEE---------EEeeCCC----eEEEEeCCCcEEEEecCCCeee
Q 010296          283 --------DRTVKIWNAEDRAYISTLFGHQSEVLT---------IDCLRKE----RVLTVGRDRSMQLWKVPEESRL  338 (513)
Q Consensus       283 --------dg~i~iwd~~~~~~~~~~~~~~~~v~~---------~~~~~~~----~~~~~~~d~~i~iwd~~~~~~~  338 (513)
                              ...|...|+++++.+..+......+..         +....++    .++.+..+|.++++|..+++.+
T Consensus       261 ~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             ccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence                    245778899999887766543322221         1122233    2346778899999999888766

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=0.038  Score=46.19  Aligned_cols=196  Identities=10%  Similarity=0.123  Sum_probs=124.1

Q ss_pred             EEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCc
Q 010296          164 AVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRH  243 (513)
Q Consensus       164 ~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  243 (513)
                      +.-.+|..+.||.-+ ..++.|||+++...++.+                    ....+|.--.|-.+. .|+..+ +..
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~--------------------~~~e~VvfWkWis~~-~L~lVT-~ta  123 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH--------------------TMTDDVTFWKWISLN-TVALVT-DNA  123 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE--------------------ECSSCCCEEEESSSS-EEEEEC-SSE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceE--------------------EcCCCcEEEEecCCC-EEEEEc-CCc
Confidence            345678888888655 468999999998877654                    234456667776444 455554 457


Q ss_pred             EEEEeCCCc-ceeeeccCcC----CCeEEEEEecCCCeEEEEe-------CCCcEEEEeCCCCceeEEeecccCCeEEEE
Q 010296          244 IHLWDTRIQ-EHIQAFPGHR----GPVSCLTFRQGTSELFSGS-------FDRTVKIWNAEDRAYISTLFGHQSEVLTID  311 (513)
Q Consensus       244 i~vwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  311 (513)
                      |+-|++... .+...+..|.    ..|..-..+++.++++..+       -.|.+.+|....+ .-+.+.+|......+.
T Consensus       124 VYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~  202 (327)
T d1utca2         124 VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFK  202 (327)
T ss_dssp             EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEEC
T ss_pred             eEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEE
Confidence            999999542 4555555443    3566677788888876433       2467889998654 3455666765544444


Q ss_pred             eeCC---CeEEEE----eCCCcEEEEecCCCee---------e-EEecC---CCCeeEEEeecC-CeEEEEeCCCCEEEE
Q 010296          312 CLRK---ERVLTV----GRDRSMQLWKVPEESR---------L-VFRAP---ASSLECCCFISN-DEFLSGSDDGSIELW  370 (513)
Q Consensus       312 ~~~~---~~~~~~----~~d~~i~iwd~~~~~~---------~-~~~~~---~~~v~~~~~~~~-~~~~~~~~dg~i~iw  370 (513)
                      ...+   ..+++-    ...+.+++.++.....         . .+..+   ..-..++.+++. |.+...+.-|.|++|
T Consensus       203 ~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~ly  282 (327)
T d1utca2         203 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY  282 (327)
T ss_dssp             CTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             cCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEE
Confidence            3321   123322    1236788888754211         1 11111   233445666654 456788999999999


Q ss_pred             ecCCCCeeEEeec
Q 010296          371 SLLRKKPVYIVKN  383 (513)
Q Consensus       371 d~~~~~~~~~~~~  383 (513)
                      |+.++.+++.-+.
T Consensus       283 DleTgt~i~~nRI  295 (327)
T d1utca2         283 DLETGTCIYMNRI  295 (327)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             EcccccEEEEeec
Confidence            9999999887654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.23  E-value=0.071  Score=48.47  Aligned_cols=203  Identities=9%  Similarity=0.003  Sum_probs=107.2

Q ss_pred             ccCCCeEEEEECCCCCeEEEE-eC----CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          157 KHRQSVTAVALSEDDSKGFSA-SK----DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       157 ~h~~~V~~~~~s~~~~~l~t~-~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      ++.-.+..+++||++++||.+ +.    -.+|+++|+.+++.+...                    -.......++|+++
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~--------------------i~~~~~~~~~W~~D  181 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV--------------------LERVKFSCMAWTHD  181 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE--------------------EEEECSCCEEECTT
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc--------------------cccccccceEEcCC
Confidence            344445677899999999843 22    357999999999865421                    00111246889999


Q ss_pred             CCEEEEEeCC----------------CcEEEEeCCCcce--eeeccC--cCCCeEEEEEecCCCeEEEEeC---CCc--E
Q 010296          232 GRYLASGGLD----------------RHIHLWDTRIQEH--IQAFPG--HRGPVSCLTFRQGTSELFSGSF---DRT--V  286 (513)
Q Consensus       232 ~~~l~s~~~d----------------g~i~vwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~---dg~--i  286 (513)
                      +..|+....+                ..|..|.+.+...  +..+..  ....+..+..++++++++....   +..  +
T Consensus       182 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~  261 (430)
T d1qfma1         182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRL  261 (430)
T ss_dssp             SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEE
T ss_pred             CCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEE
Confidence            9987754432                2577887766532  223333  3345667788999998764322   333  4


Q ss_pred             EEEeCCCCc--------eeEEeecccCCeEEEEeeCCCeEEEEe----CCCcEEEEecCCCee---eEEe-cCCCCeeEE
Q 010296          287 KIWNAEDRA--------YISTLFGHQSEVLTIDCLRKERVLTVG----RDRSMQLWKVPEESR---LVFR-APASSLECC  350 (513)
Q Consensus       287 ~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~----~d~~i~iwd~~~~~~---~~~~-~~~~~v~~~  350 (513)
                      .+.++....        ....+.........+ .+.++.++..+    .++.|...++.....   ..+. .+...+..-
T Consensus       262 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~  340 (430)
T d1qfma1         262 WYCDLQQESNGITGILKWVKLIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEW  340 (430)
T ss_dssp             EEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEE
T ss_pred             EEeeCCCcccccccccceeEeecccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeee
Confidence            444543321        111222222222222 22334444332    235566666654321   1222 233334333


Q ss_pred             Eee-cCCeEEEE-eCCC--CEEEEecCCCCeeEE
Q 010296          351 CFI-SNDEFLSG-SDDG--SIELWSLLRKKPVYI  380 (513)
Q Consensus       351 ~~~-~~~~~~~~-~~dg--~i~iwd~~~~~~~~~  380 (513)
                      .+. ..+.|+.. ..++  .|+++++.+++....
T Consensus       341 ~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~  374 (430)
T d1qfma1         341 VACVRSNFLVLCYLHDVKNTLQLHDLATGALLKI  374 (430)
T ss_dssp             EEEETTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred             EEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEe
Confidence            333 34455533 3443  578889888776544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.15  E-value=0.058  Score=47.12  Aligned_cols=60  Identities=8%  Similarity=0.209  Sum_probs=40.6

Q ss_pred             EEEEEEecCCCEEEEe-cCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecC-CCEEEEE
Q 010296          425 VSSVTVCGGSDLAASG-AGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS-GQFLIAG  485 (513)
Q Consensus       425 i~~~~~s~~~~~l~~g-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~~~  485 (513)
                      .+.|+++|++++|+++ +..+.|++|++... ..+.........+.+-.+.+.+. |.+.+++
T Consensus       208 pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~-~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         208 ANGINISPDGKYVYIAELLAHKIHVYEKHAN-WTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTT-SCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             cceeEECCCCCEEEEEeCCCCeEEEEEeCCC-cccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            7899999999876655 56788999999865 33333333334566777888764 5555444

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.13  Score=43.01  Aligned_cols=199  Identities=9%  Similarity=-0.071  Sum_probs=122.1

Q ss_pred             cccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcc----eeeeccCcCCCeEEEEEecCCCeEEEE-eCCCcEEEEeCCC
Q 010296          220 SKHILALAVSSDGRYLASGG-LDRHIHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGTSELFSG-SFDRTVKIWNAED  293 (513)
Q Consensus       220 ~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~  293 (513)
                      ...+.+|+|.+..+.|.-.. ..+.|...++....    ....+......+..|++.+-+..|+.+ ...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            34578899999877776654 45667766664321    122223334557789998877777655 4567899999987


Q ss_pred             CceeEEeecccCCeEEEEeeC-CCeEEEEe--CCCcEEEEecCCCeeeEEe-cCCCCeeEEEeecCC-e-EEEEeCCCCE
Q 010296          294 RAYISTLFGHQSEVLTIDCLR-KERVLTVG--RDRSMQLWKVPEESRLVFR-APASSLECCCFISND-E-FLSGSDDGSI  367 (513)
Q Consensus       294 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~--~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~-~-~~~~~~dg~i  367 (513)
                      ......+.........++..| .+.++...  ..+.|...++.......+. ........+++.+.+ + +++-...+.|
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I  188 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEE
Confidence            665555555566788999988 45665443  3456777777665544333 334566788888755 4 4455667888


Q ss_pred             EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296          368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR  447 (513)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~  447 (513)
                      ...++..............                                   ......|++.. +.++.+-..++.|.
T Consensus       189 ~~~~~dG~~~~~~~~~~~~-----------------------------------~~~p~~lav~~-~~ly~td~~~~~I~  232 (266)
T d1ijqa1         189 SSIDVNGGNRKTILEDEKR-----------------------------------LAHPFSLAVFE-DKVFWTDIINEAIF  232 (266)
T ss_dssp             EEEETTSCSCEEEEECTTT-----------------------------------TSSEEEEEEET-TEEEEEETTTTEEE
T ss_pred             EEEECCCCCEEEEEeCCCc-----------------------------------ccccEEEEEEC-CEEEEEECCCCeEE
Confidence            8888866544333322111                                   11155677763 34444445667787


Q ss_pred             EEEeCCC
Q 010296          448 LWAIESE  454 (513)
Q Consensus       448 vwd~~~~  454 (513)
                      ..+..++
T Consensus       233 ~~~~~~g  239 (266)
T d1ijqa1         233 SANRLTG  239 (266)
T ss_dssp             EEETTTC
T ss_pred             EEECCCC
Confidence            7777665

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.70  E-value=0.26  Score=46.49  Aligned_cols=119  Identities=11%  Similarity=0.010  Sum_probs=65.2

Q ss_pred             CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296          171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR  250 (513)
Q Consensus       171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~  250 (513)
                      +..|++++.++.|.-.|..+|+.+..+........     .+  ......   ..+++.  +..++.++.++.+.-.|..
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~-----~~--~~~~~~---rg~a~~--~~~i~~~t~~~~l~alda~  135 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDI-----RP--CCDVVN---RGAAIY--GDKVFFGTLDASVVALNKN  135 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTC-----CC--SSCSCC---CCCEEE--TTEEEEEETTTEEEEEESS
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCcc-----cc--cccccc---CCceEe--CCceEEecCCCeEEEeccc
Confidence            34677788889999999999998865421100000     00  000000   122232  4467778889999999999


Q ss_pred             Ccceeeecc--CcCC----CeEEEEEec--CCCeEEEE-------eCCCcEEEEeCCCCceeEEee
Q 010296          251 IQEHIQAFP--GHRG----PVSCLTFRQ--GTSELFSG-------SFDRTVKIWNAEDRAYISTLF  301 (513)
Q Consensus       251 ~~~~~~~~~--~~~~----~v~~~~~~~--~~~~l~~~-------~~dg~i~iwd~~~~~~~~~~~  301 (513)
                      +++.+....  .+..    .-.-+.+.+  .+..++..       +..+.|.-+|..+++.+.++.
T Consensus       136 tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~  201 (582)
T d1flga_         136 TGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             SCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             ccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEe
Confidence            998764322  1110    000011111  12333322       235678999999998877653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.25  E-value=0.39  Score=43.30  Aligned_cols=100  Identities=14%  Similarity=0.120  Sum_probs=62.9

Q ss_pred             CcccEEEEEEcCCCCEEEEEe-C----CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC----------
Q 010296          219 QSKHILALAVSSDGRYLASGG-L----DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD----------  283 (513)
Q Consensus       219 ~~~~v~~~~~s~~~~~l~s~~-~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------  283 (513)
                      +.-.+..+++||++++||.+- .    ...|+++|+.+++.+...- .......++|.++++.|+....+          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            344466778999999988542 2    3469999999998764221 11223568999999988754332          


Q ss_pred             ------CcEEEEeCCCCce--eEEeecc--cCCeEEEEeeCCCeEE
Q 010296          284 ------RTVKIWNAEDRAY--ISTLFGH--QSEVLTIDCLRKERVL  319 (513)
Q Consensus       284 ------g~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~~  319 (513)
                            ..|..|.+.+...  +..+...  ...+..+..+++++++
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l  247 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYV  247 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCccee
Confidence                  2588888877543  2233322  2345566677777544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.61  Score=40.75  Aligned_cols=180  Identities=9%  Similarity=-0.011  Sum_probs=102.7

Q ss_pred             CCeEEEEEecCCCeEEEEeCCCcEEEEeCCC-----------CceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEe
Q 010296          263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAED-----------RAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWK  331 (513)
Q Consensus       263 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd  331 (513)
                      ...+-+++++...++++|+.++ +.|..+..           .......  .-..|..++|+.+.  +++..++.+..++
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d~--l~v~~~~~l~~~~  111 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGDQ--VLVSTRNALYSLD  111 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETTE--EEEEESSEEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCCE--EEEEeCCCEEEEE
Confidence            3456788888777888777775 56665321           1111111  22367888887553  4444556777787


Q ss_pred             cCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCC
Q 010296          332 VPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN  410 (513)
Q Consensus       332 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  410 (513)
                      ...-... .......++..+.+.|. .++....+|.+.++++..++...........                       
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~-----------------------  167 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNVTSF-----------------------  167 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESEEEE-----------------------
T ss_pred             eeccccccccccccccccceecCCc-eeEEEecCCCEEEEEeccCccccccCCcceE-----------------------
Confidence            7654333 33334456777777775 4666777899999999888654332211100                       


Q ss_pred             CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE-EeCCCCcceeeeee-cCcccEEEEEEeecCCCEEEEE
Q 010296          411 LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW-AIESETKDIQPLYN-LPLVGFVNSLAFAKSGQFLIAG  485 (513)
Q Consensus       411 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw-d~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~~~  485 (513)
                               .-...+.+++|++.|+.++++..++ +.+- ++...    ..+.. ......|.+|.|-.+..++++-
T Consensus       168 ---------~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~----~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         168 ---------DVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLP----SELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ---------EECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCC----HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ---------EecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCc----cccCCCcCCCcceeEEEEecCceEEEEE
Confidence                     0012278888888888888774332 2221 22211    01111 0124568899998887777655

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.28  E-value=0.47  Score=37.01  Aligned_cols=220  Identities=12%  Similarity=0.080  Sum_probs=110.7

Q ss_pred             CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC--CCEEEE------EeCC
Q 010296          170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD--GRYLAS------GGLD  241 (513)
Q Consensus       170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s------~~~d  241 (513)
                      +.++|+++...|.+.++-+..++.+..-                      ..+|.... .|.  -.++..      |-.-
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt----------------------kePI~~~~-~Pk~~ldfi~f~RDV~kGkE~   81 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN----------------------REPINSVL-DPHYGVGRVILVRDVSKGAEQ   81 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC----------------------SSCCSEEC-EECTTBSEEEEEEECSTTSCC
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe----------------------cccccCcC-CCccCcceEEEEeehhcCcce
Confidence            3457888888999999998888765422                      11121111 111  111111      1112


Q ss_pred             CcEEEEeCCCcceeeeccCcC-CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE--Eeecc-------cCCeEEEE
Q 010296          242 RHIHLWDTRIQEHIQAFPGHR-GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS--TLFGH-------QSEVLTID  311 (513)
Q Consensus       242 g~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~-------~~~v~~~~  311 (513)
                      ..|++-++...-.-..+.... -.|.++++. +.+..++|+......+|-+..|+...  .+.+.       ..-|..+.
T Consensus        82 Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g  160 (313)
T d2hu7a1          82 HALFKVNTSRPGEEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLG  160 (313)
T ss_dssp             EEEEEEETTSTTCEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEE
T ss_pred             eeEEEEccCCCCeeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEe
Confidence            335555554222222222222 345555553 34566688888888888888776432  22211       11122222


Q ss_pred             eeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCC---CCEEEEecCCCCeeEEeecCCCcc
Q 010296          312 CLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDD---GSIELWSLLRKKPVYIVKNAHPLL  388 (513)
Q Consensus       312 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~  388 (513)
                      +...       .-..+.+-|+.++....+......+......++.+++++-..   ....-+|+++++.-.. ...... 
T Consensus       161 ~~~g-------~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerv-e~P~kd-  231 (313)
T d2hu7a1         161 FFGG-------GRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDL-ELPSKD-  231 (313)
T ss_dssp             EEET-------TEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEEC-CCSSCH-
T ss_pred             eecC-------CcceEEEEecccCCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeee-ecCccc-
Confidence            2221       112233334444444445555556666777777766544321   1222346665543221 110000 


Q ss_pred             cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296          389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA  450 (513)
Q Consensus       389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd  450 (513)
                                  +.                .-....|+-+-+.|++++++.+-.||.-++|.
T Consensus       232 ------------~~----------------sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         232 ------------FS----------------SYRPTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             ------------HH----------------HHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             ------------ce----------------eecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence                        00                11123378888999999999999999999987

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.19  E-value=1.1  Score=40.52  Aligned_cols=53  Identities=11%  Similarity=0.049  Sum_probs=38.6

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCccee--eecc------CcCCCeEEEEEecC
Q 010296          221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI--QAFP------GHRGPVSCLTFRQG  273 (513)
Q Consensus       221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~------~~~~~v~~~~~~~~  273 (513)
                      ...++|+|.|++++|++--..|.|++++..++...  ..+.      .-......|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45789999999998887755799999987776542  2221      12356789999985

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.02  E-value=0.94  Score=39.04  Aligned_cols=188  Identities=10%  Similarity=0.152  Sum_probs=107.3

Q ss_pred             cCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC----CC---eEEEEe-C-C--CcEEEEecCCCe-ee-
Q 010296          272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR----KE---RVLTVG-R-D--RSMQLWKVPEES-RL-  338 (513)
Q Consensus       272 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~~~~~-~-d--~~i~iwd~~~~~-~~-  338 (513)
                      |...+++.....+-|++||+. |+.+..+.  .+.++.|..-.    .+   .+++++ . +  .+|.+|.+.... .+ 
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345667777777789999995 67676653  45566555432    22   234444 2 2  357788775322 12 


Q ss_pred             EEec-------CCCCeeEEEe--ecC-Ce--EEEEeCCCCEEEEecC---CCC----eeEEeecCCCcccCCCCcccCcC
Q 010296          339 VFRA-------PASSLECCCF--ISN-DE--FLSGSDDGSIELWSLL---RKK----PVYIVKNAHPLLDGLKNFEQDEG  399 (513)
Q Consensus       339 ~~~~-------~~~~v~~~~~--~~~-~~--~~~~~~dg~i~iwd~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
                      .+..       ....+..+|+  ++. +.  +++...+|.+..|.+.   .+.    .++.+...               
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~---------------  179 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN---------------  179 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS---------------
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC---------------
Confidence            1111       1123555665  443 43  4577788998888763   222    22233221               


Q ss_pred             ccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC-cceeeeeec---CcccEEEEEEe
Q 010296          400 KISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET-KDIQPLYNL---PLVGFVNSLAF  475 (513)
Q Consensus       400 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~-~~~~~~~~~---~~~~~v~~v~~  475 (513)
                                             ..+-.|.+......|+.+-++.-|+.++..... .....+...   ...+-+-.|++
T Consensus       180 -----------------------~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlai  236 (353)
T d1h6la_         180 -----------------------SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTI  236 (353)
T ss_dssp             -----------------------SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEE
T ss_pred             -----------------------CccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEE
Confidence                                   128899999998899999887656555554221 111111111   12455666765


Q ss_pred             ec--CCC-EEEEEecCCCcccccccCCC
Q 010296          476 AK--SGQ-FLIAGVGQEPRLGRWGHLPA  500 (513)
Q Consensus       476 sp--~~~-~l~~~~~~dg~v~~W~~~~~  500 (513)
                      -.  ++. ||++++-.+.+..+|+....
T Consensus       237 y~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         237 YYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            43  333 77777677789999987653

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=1.3  Score=36.75  Aligned_cols=30  Identities=13%  Similarity=0.258  Sum_probs=19.6

Q ss_pred             CCCEEEEecCCC-----cEEEEEeCCCCcceeeeeec
Q 010296          433 GSDLAASGAGNG-----SVRLWAIESETKDIQPLYNL  464 (513)
Q Consensus       433 ~~~~l~~g~~dg-----~v~vwd~~~~~~~~~~~~~~  464 (513)
                      ++++++.|+.++     .|.+||+.+.  ....+...
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~  276 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTD--TWSEVTRM  276 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEEC
T ss_pred             CCEEEEEecCCCCeecceEEEEECCCC--EEEECCCC
Confidence            678888887554     3788888875  34444433

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.21  E-value=1.3  Score=39.93  Aligned_cols=62  Identities=16%  Similarity=0.144  Sum_probs=40.3

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296          159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD  231 (513)
Q Consensus       159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  231 (513)
                      -..-++|+|.|++++|++--..|.|++++..++........          . .......-......|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~----------~-~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQV----------P-EIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------T-TCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccC----------C-ccccccCCCCceeeEEeCCC
Confidence            35677999999999888776679999998877654321100          0 00001122456889999994

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.60  E-value=2.7  Score=35.96  Aligned_cols=156  Identities=13%  Similarity=0.086  Sum_probs=89.5

Q ss_pred             EEEEEEcCCCCEEEEEeC------------CCcEEEEeCCCcceee-ecc--C-----cCCCeEEEEE--ecCCC-eEEE
Q 010296          223 ILALAVSSDGRYLASGGL------------DRHIHLWDTRIQEHIQ-AFP--G-----HRGPVSCLTF--RQGTS-ELFS  279 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~------------dg~i~vwd~~~~~~~~-~~~--~-----~~~~v~~~~~--~~~~~-~l~~  279 (513)
                      .-.|+..|+|..+++++.            .|.|.++|+.+..... .+.  +     ..-....+.+  .+++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            345788888887776642            4889999987654321 111  1     1112344444  34555 3555


Q ss_pred             Ee---CCCcEEEEeCCCCce----eEEeec-ccCCeEEEEeeCCCeEEEEeC----C------------CcEEEEecCCC
Q 010296          280 GS---FDRTVKIWNAEDRAY----ISTLFG-HQSEVLTIDCLRKERVLTVGR----D------------RSMQLWKVPEE  335 (513)
Q Consensus       280 ~~---~dg~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~~~~----d------------~~i~iwd~~~~  335 (513)
                      ..   ...+|.+|++.....    +.++.. .....+.+.+..++.+++...    .            +...+|....+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            43   356788888754322    122221 223467888888887775531    0            22333433344


Q ss_pred             eeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCee
Q 010296          336 SRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPV  378 (513)
Q Consensus       336 ~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~  378 (513)
                      ..............++++|++.  +++-+..+.|++|++.....+
T Consensus       197 ~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l  241 (340)
T d1v04a_         197 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL  241 (340)
T ss_dssp             CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCccc
Confidence            3333333345678899999985  456777889999998765433

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.05  E-value=2.1  Score=33.34  Aligned_cols=211  Identities=10%  Similarity=0.097  Sum_probs=112.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCC--CeEEE------EeCCCcEEEEeCCCCceeEEeec
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT--SELFS------GSFDRTVKIWNAEDRAYISTLFG  302 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~------~~~dg~i~iwd~~~~~~~~~~~~  302 (513)
                      +.++|+++...|.+.++-+..++.+.--+   .+|..... |..  .++..      |-.-..|++-++...-.-..+..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~-Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLD-PHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECE-ECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCC-CccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence            44578888789999999887776554322   33322211 211  11111      11122355555543222222322


Q ss_pred             cc-CCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEe--cC--------CCCeeEEEeecCCe--EEEEeC-CCCEE
Q 010296          303 HQ-SEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFR--AP--------ASSLECCCFISNDE--FLSGSD-DGSIE  368 (513)
Q Consensus       303 ~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~--~~--------~~~v~~~~~~~~~~--~~~~~~-dg~i~  368 (513)
                      .. -.|.++++......++++......+|-+..++...+.  .+        ...|..+.+...+.  |+++.- .|.++
T Consensus       101 pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr  180 (313)
T d2hu7a1         101 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  180 (313)
T ss_dssp             SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred             CceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence            22 4566777765666779999889999988887765322  22        22333444443332  444444 77777


Q ss_pred             EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC---CCc
Q 010296          369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG---NGS  445 (513)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---dg~  445 (513)
                      |++...+.                                                ++....++..+. +++-.   ...
T Consensus       181 i~tpkeGS------------------------------------------------~~~ay~~~gnKV-~sdyEt~gEsy  211 (313)
T d2hu7a1         181 VFDSGEGS------------------------------------------------FSSASISPGMKV-TAGLETAREAR  211 (313)
T ss_dssp             EECCSSEE------------------------------------------------EEEEEECTTSCE-EEEEEESSCEE
T ss_pred             EecCCCCc------------------------------------------------ccceeEccCcee-eeccCCCCceE
Confidence            77755543                                                555555555444 33321   111


Q ss_pred             EEEEEeCCCCcceee-----eeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296          446 VRLWAIESETKDIQP-----LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG  496 (513)
Q Consensus       446 v~vwd~~~~~~~~~~-----~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~  496 (513)
                      ..-+|+.++.-....     +..+ ..-.|+-+-+.|++++++.+ -.||.=+++.
T Consensus       212 wit~D~~s~~yerve~P~kd~~sy-~p~~I~~~~Y~Pdd~L~iia-krdG~s~lF~  265 (313)
T d2hu7a1         212 LVTVDPRDGSVEDLELPSKDFSSY-RPTAITWLGYLPDGRLAVVA-RREGRSAVFI  265 (313)
T ss_dssp             EEEECTTTCCEEECCCSSCHHHHH-CCSEEEEEEECTTSCEEEEE-EETTEEEEEE
T ss_pred             EEEEecccCceeeeecCcccceee-cceEEEeeeeCCCCcEEEEE-ecCCchheee
Confidence            223355554211111     1111 13457778899999998888 8888888774

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.09  E-value=4.3  Score=35.13  Aligned_cols=130  Identities=7%  Similarity=0.080  Sum_probs=78.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCc---------ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 010296          223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQ---------EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED  293 (513)
Q Consensus       223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  293 (513)
                      ..-++.++...+|+.|+.++ +.|..+..-         .........-..|..++|+.+  .|+.. .++.+..++...
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~  114 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEE  114 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSS
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeec
Confidence            55688898888888888775 667653211         000001111235888999755  34444 456788888776


Q ss_pred             CceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEe------cCCCCeeEEEeecCCe
Q 010296          294 RAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFR------APASSLECCCFISNDE  357 (513)
Q Consensus       294 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~  357 (513)
                      -...........++..+.++|. .++....++.+.++.+.........      .-...+.+++|++.|.
T Consensus       115 l~~~~~~~~~~~~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgk  183 (381)
T d1xipa_         115 LSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSF  183 (381)
T ss_dssp             TTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCE
T ss_pred             cccccccccccccccceecCCc-eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcE
Confidence            5544444445667888888774 4566777899999998876543211      1123455555555554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.26  E-value=6.9  Score=33.39  Aligned_cols=139  Identities=11%  Similarity=0.184  Sum_probs=81.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec----CC--CeEEEEeC--C--CcEEEEeCCC-CceeEE
Q 010296          231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ----GT--SELFSGSF--D--RTVKIWNAED-RAYIST  299 (513)
Q Consensus       231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~~--~~l~~~~~--d--g~i~iwd~~~-~~~~~~  299 (513)
                      +..+++.....+-|++||+. |+.+..+.  .+.++.+..-.    .+  ..|++++.  +  .+|.+|.+.. ...+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            45567776777779999985 77777765  35677666542    22  22444442  2  3577887753 223333


Q ss_pred             eecc-------cCCeEEEEe--eCC-C--eEEEEeCCCcEEEEecCC---Ce----eeEEecCCCCeeEEEeecCC-eEE
Q 010296          300 LFGH-------QSEVLTIDC--LRK-E--RVLTVGRDRSMQLWKVPE---ES----RLVFRAPASSLECCCFISND-EFL  359 (513)
Q Consensus       300 ~~~~-------~~~v~~~~~--~~~-~--~~~~~~~d~~i~iwd~~~---~~----~~~~~~~~~~v~~~~~~~~~-~~~  359 (513)
                      +...       ...++.+|+  ++. +  .+++...+|.+..|.+..   +.    .+........+..|.+.+.. .|+
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY  195 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence            3211       124666666  443 4  344667789998887732   21    12233445677788887764 577


Q ss_pred             EEeCCCCEEEEec
Q 010296          360 SGSDDGSIELWSL  372 (513)
Q Consensus       360 ~~~~dg~i~iwd~  372 (513)
                      .+-.+.-|..++.
T Consensus       196 isEE~~Giw~~~a  208 (353)
T d1h6la_         196 IAEEDEAIWKFSA  208 (353)
T ss_dssp             EEETTTEEEEEES
T ss_pred             EecCccceEEEEe
Confidence            7777765555554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.14  E-value=9.4  Score=31.01  Aligned_cols=54  Identities=7%  Similarity=0.084  Sum_probs=28.0

Q ss_pred             CcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeC---------CCcEEEEeCCCCcee
Q 010296          242 RHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSF---------DRTVKIWNAEDRAYI  297 (513)
Q Consensus       242 g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~  297 (513)
                      ..+.+||+.+++-..  .++.....- +++.. ++..++.|+.         -..+.+||..+....
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~   83 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS   83 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             ceEEEEECCCCeEEECCCCCCcccee-EEEEE-CCEEEEEeCcccCCCCccccchhhhccccccccc
Confidence            357889988765332  233222121 22222 4555555542         236778888776543

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=82.23  E-value=8.6  Score=29.18  Aligned_cols=107  Identities=8%  Similarity=-0.067  Sum_probs=60.6

Q ss_pred             CCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce------eEEe-ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCC
Q 010296          262 RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY------ISTL-FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPE  334 (513)
Q Consensus       262 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~-~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~  334 (513)
                      -..+.-|+|+|++.+.++-.  +.++.=.+.+...      ...+ .+.=+...-+.|.|.|.|.+++. +.++-=...+
T Consensus        39 ~~n~~~i~fsP~G~LyaVr~--~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt~-~~LYr~~pPt  115 (235)
T d1tl2a_          39 WSNFKFLFLSPGGELYGVLN--DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSK-DKLYKASPPQ  115 (235)
T ss_dssp             CTTCSEEEECTTSCEEEEET--TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEET-TEEEEESCCC
T ss_pred             ccceeEEEECCCCcEEEEEC--CeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEecC-cceecCCcCc
Confidence            34577899999998766543  3555544433221      1111 11122456678899999888774 5554433333


Q ss_pred             Ceee--------EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEec
Q 010296          335 ESRL--------VFRAPASSLECCCFISNDEFLSGSDDGSIELWSL  372 (513)
Q Consensus       335 ~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~  372 (513)
                      ....        +-...-..+..+-|.|+|.|.+...++ +.-+..
T Consensus       116 n~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~~~-l~k~~p  160 (235)
T d1tl2a_         116 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQQ-FYKALP  160 (235)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETTE-EEEECC
T ss_pred             ccchhhhhhhhhhccCCcCceeEEEECCCceEEEEECCc-EEEcCC
Confidence            3221        112223457788999999877665553 555443