Citrus Sinensis ID: 010300

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
MMISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR
ccEEEcccccccccccEEEEcccccEEEcccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEEccccEEcccccEEEEEccEEEEEEcccccEEEEEEEEccccEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHccccEEEcccEEEcHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccEEccccccEEEEccccEEEEccccccEEcccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccccccEEEEEccccEEEEEEEccccEEEEccEEEcccccHHHccHHHHHHHHHHHHHHHccHHHHHHccc
ccccHHHHHcccccHHHEEccccccccccccccccccccccccHHHEEEEcccEEEEcccEEEEccccccccccccccccccccccccEEEEEcccccccccHEEEEEEEEccccccccccEEEEEEcccEEEEEccccccEEEEEEEccccEEEEccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHccccccccEEEHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEcHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHcHHHcEEEccccccEEEcccccEEEcEEEccEEEccEEccHHHccHHHHHHHHHHHHHHHHcccccHHHHccccEEEEEccccccccccccccccccEEEEEcccEEEEEEEcccEEEEEcEEEEEEEcccEEEcHHHHHHHHHHHHHHHHcHHHHHHccc
mmisrriwqkrpptsswiflrpytsqisvpspspsrfpvqtpsligFLSSYAASSFRSVYKISslempsmvsrccysnhaladlpasgivdvplaqtgegiaECELLKWFVKEGDeieefqplcavqsdkatIEITSRYKGKVAQllhapgnivKVGETLLKLVvgdsavptpssdvlesvkppgsenspdsklnkdtvggvlatpTVRNLAKLYginlydvdatgkdgrvLKEDVLKYAVQkgaadgpstasvSADCREQLlgeeetypqtfaevkwypddktvplrgfQRTMVKTMSMAakiphfhyveeINCDALVKLKASfqnnnsdpnikhtfLPSLIKSLSMAMSkypfmnscfnEESLEVILKGSHNIGIAMATqhglavpniknvqslSILEITKELSRLQQLAkdnelnpadnsggtitlsnigaiggkfgapllnlpeVAIIAMGriekvprlsddgnvypspimtvnigadhrvldgATVAKFCNEWKQLIENPELLLLQMR
mmisrriwqkrpptsswiflrPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFqplcavqsdKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDsavptpssdvlesvkppgsenspdsklnkdtvggvlatptvrnLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQkgaadgpstasvSADCREQLLGEEEtypqtfaevkwypddktvpLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFqnnnsdpnikHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDnelnpadnsGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIekvprlsddgnvyPSPIMTVNIGADHRVLDGATVAKFCNEWKQLienpellllqmr
MMISRRIWQKRPPTSSWIFLRPYTSQIsvpspspsrfpvQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR
*******************************************LIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD*******************************VGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ*******************LLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNN*DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSR*****************GTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL***
**ISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSS*****************************************VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK********************************************TVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY***********************************************LRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQ*****PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR
**********RPPTSSWIFLRPYTSQI*********FPVQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVP**********************LNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ*************ADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR
**ISRRIWQKRPPTSSWIFLRPYTSQI****P*PSR**VQTPSLIGFLSSYAASSFRSVYKISSLEMPS****************ASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV***************************************TP*VRN****YGINLYDVDATGKDGRVLKEDVLKYAVQ*******************************************PLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVYKISSLEMPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query513 2.2.26 [Sep-21-2011]
P11182482 Lipoamide acyltransferase yes no 0.814 0.867 0.417 6e-89
Q23571448 Lipoamide acyltransferase yes no 0.812 0.930 0.419 2e-88
P53395482 Lipoamide acyltransferase yes no 0.812 0.865 0.421 3e-88
P11181482 Lipoamide acyltransferase yes no 0.807 0.858 0.402 2e-84
Q8CT13433 Dihydrolipoyllysine-resid yes no 0.803 0.951 0.347 1e-63
P65636430 Dihydrolipoyllysine-resid yes no 0.805 0.960 0.352 2e-63
P65635430 Dihydrolipoyllysine-resid yes no 0.805 0.960 0.352 2e-63
Q59821430 Dihydrolipoyllysine-resid yes no 0.803 0.958 0.354 2e-63
Q8NX76430 Dihydrolipoyllysine-resid yes no 0.805 0.960 0.352 3e-63
Q6GAB9430 Dihydrolipoyllysine-resid yes no 0.805 0.960 0.352 3e-63
>sp|P11182|ODB2_HUMAN Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DBT PE=1 SV=3 Back     alignment and function desciption
 Score =  328 bits (841), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 178/426 (41%), Positives = 257/426 (60%), Gaps = 8/426 (1%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
           +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct: 64  VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 123

Query: 149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 208
              +I  VG+ L+   +   A+     DV+E+      E++      + T    LATP V
Sbjct: 124 NLDDIAYVGKPLVD--IETEALKDSEEDVVETPAVSHDEHTHQEIKGRKT----LATPAV 177

Query: 209 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEET 268
           R LA    I L +V  +GKDGR+LKED+L Y  ++  A  P +  V          ++ T
Sbjct: 178 RRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSPKVEI-MPPPPKPKDMT 236

Query: 269 YPQTFAEVKWYP-DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQN 327
            P   ++   +   DKT P++GFQ+ MVKTMS A KIPHF Y +EI+   LVKL+   + 
Sbjct: 237 VPILVSKPPVFTGKDKTEPIKGFQKAMVKTMSAALKIPHFGYCDEIDLTELVKLREELKP 296

Query: 328 NNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAV 387
                 IK +F+P  +K+ S+ + ++P +N+  +E    +  K SHNIGIAM T+ GL V
Sbjct: 297 IAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIV 356

Query: 388 PNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLP 447
           PN+KNVQ  SI +I  EL+RLQ+L    +L+  D +GGT TLSNIG+IGG F  P++  P
Sbjct: 357 PNVKNVQICSIFDIATELNRLQKLGSVGQLSTTDLTGGTFTLSNIGSIGGTFAKPVIMPP 416

Query: 448 EVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPEL 507
           EVAI A+G I+ +PR +  G VY + IM V+  ADHRV+DGAT+++F N WK  +ENP  
Sbjct: 417 EVAIGALGSIKAIPRFNQKGEVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLENPAF 476

Query: 508 LLLQMR 513
           +LL ++
Sbjct: 477 MLLDLK 482
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 6EC: 8
>sp|Q23571|ODB2_CAEEL Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Caenorhabditis elegans GN=ZK669.4 PE=3 SV=1 Back     alignment and function description
>sp|P53395|ODB2_MOUSE Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dbt PE=2 SV=2 Back     alignment and function description
>sp|P11181|ODB2_BOVIN Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Bos taurus GN=DBT PE=1 SV=2 Back     alignment and function description
>sp|Q8CT13|ODP2_STAES Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhC PE=3 SV=1 Back     alignment and function description
>sp|P65636|ODP2_STAAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain N315) GN=pdhC PE=1 SV=1 Back     alignment and function description
>sp|P65635|ODP2_STAAM Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhC PE=1 SV=1 Back     alignment and function description
>sp|Q59821|ODP2_STAAU Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus GN=pdhC PE=3 SV=1 Back     alignment and function description
>sp|Q8NX76|ODP2_STAAW Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain MW2) GN=pdhC PE=3 SV=1 Back     alignment and function description
>sp|Q6GAB9|ODP2_STAAS Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain MSSA476) GN=pdhC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query513
255551811504 lipoamide acyltransferase component of b 0.980 0.998 0.668 0.0
359477250506 PREDICTED: lipoamide acyltransferase com 0.974 0.988 0.637 0.0
224110406490 predicted protein [Populus trichocarpa] 0.953 0.997 0.649 0.0
296083342463 unnamed protein product [Vitis vinifera] 0.877 0.971 0.673 1e-177
147792119527 hypothetical protein VITISV_019281 [Viti 0.857 0.834 0.661 1e-171
356521841515 PREDICTED: lipoamide acyltransferase com 0.964 0.961 0.593 1e-170
449432874517 PREDICTED: lipoamide acyltransferase com 0.912 0.905 0.646 1e-170
449515343517 PREDICTED: LOW QUALITY PROTEIN: lipoamid 0.912 0.905 0.646 1e-170
356564223515 PREDICTED: lipoamide acyltransferase com 0.964 0.961 0.590 1e-169
15231314483 2-oxoisovalerate dehydrogenase E2 compon 0.931 0.989 0.603 1e-168
>gi|255551811|ref|XP_002516951.1| lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase, putative [Ricinus communis] gi|223544039|gb|EEF45565.1| lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/513 (66%), Positives = 406/513 (79%), Gaps = 10/513 (1%)

Query: 2   MISRRIWQKRPPTSSWIFLRPYTSQISVPSPSPSRFPVQTPSLIGFLSSYAASSFRSVYK 61
           MI+RR WQ+R  +S    L PYT + S  +P+      +  SL+  LS YA++SF     
Sbjct: 1   MITRRFWQRRVWSSGTRSLYPYT-RPSSSTPAAVLTERKHQSLLD-LSYYASASFTLTNT 58

Query: 62  ISSLEMPSMVSRCCYSNHALADLP-ASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEF 120
              +      +RC +++HALAD+P   G+VDVPLAQTGEGIAECELL+WFV+EGDE+EEF
Sbjct: 59  SVEVRNRYKENRCWFTSHALADVPIGGGVVDVPLAQTGEGIAECELLQWFVQEGDEVEEF 118

Query: 121 QPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLES 180
           QPLC VQSDKATIEITSRYKGKVAQ+L+ PG+IVKVGETLLK+ V +S    P  D L+ 
Sbjct: 119 QPLCEVQSDKATIEITSRYKGKVAQILYVPGDIVKVGETLLKMAVEESLASIPRVDGLKD 178

Query: 181 VKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240
            K      + D +  K  +GGVL TP VR+LAK YGI+L DV  TGKDG++LKED+L Y 
Sbjct: 179 TK------ALDLEQEKSQIGGVLCTPAVRHLAKQYGIDLNDVSGTGKDGKILKEDILNYG 232

Query: 241 VQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSM 300
           +QKG  +    AS +AD   QL   +E    T AEV    DDKTVPLRGFQRTMVKTMS+
Sbjct: 233 IQKGVIEDSPGAS-NADSGNQLKKGKEKSTCTSAEVGQLYDDKTVPLRGFQRTMVKTMSI 291

Query: 301 AAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF 360
           AAK+PHFHYVEEINC+ALV+LKASFQ+NN+DP IKHTFLP LIKSLSMA+SKYP+MNSCF
Sbjct: 292 AAKVPHFHYVEEINCNALVELKASFQSNNTDPGIKHTFLPLLIKSLSMALSKYPWMNSCF 351

Query: 361 NEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPA 420
           NEE++EV+LKGSHNIGIAMAT HGL VPNIKNVQSLSILEITKEL+RLQQLA DN+LNP 
Sbjct: 352 NEEAIEVLLKGSHNIGIAMATPHGLVVPNIKNVQSLSILEITKELARLQQLALDNKLNPE 411

Query: 421 DNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIG 480
           D +GGTI+LSNIGAIGGKFGAP++NLPEVAIIA+GRI+KVP+ +DDGNVYP+ IMTVNIG
Sbjct: 412 DITGGTISLSNIGAIGGKFGAPIINLPEVAIIAIGRIQKVPQFADDGNVYPASIMTVNIG 471

Query: 481 ADHRVLDGATVAKFCNEWKQLIENPELLLLQMR 513
           ADHRVLDGATVA+FCNEWKQLIE PELL+L +R
Sbjct: 472 ADHRVLDGATVARFCNEWKQLIEKPELLMLVLR 504

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359477250|ref|XP_002270598.2| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224110406|ref|XP_002315510.1| predicted protein [Populus trichocarpa] gi|222864550|gb|EEF01681.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296083342|emb|CBI22978.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147792119|emb|CAN68576.1| hypothetical protein VITISV_019281 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521841|ref|XP_003529559.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|449432874|ref|XP_004134223.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449515343|ref|XP_004164709.1| PREDICTED: LOW QUALITY PROTEIN: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356564223|ref|XP_003550355.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|15231314|ref|NP_187341.1| 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [Arabidopsis thaliana] gi|30680036|ref|NP_850527.1| 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [Arabidopsis thaliana] gi|7549628|gb|AAF63813.1| branched chain alpha-keto acid dehydrogenase E2 subunit [Arabidopsis thaliana] gi|21554337|gb|AAM63444.1| branched chain alpha-keto acid dehydrogenase E2 subunit [Arabidopsis thaliana] gi|222423008|dbj|BAH19487.1| AT3G06850 [Arabidopsis thaliana] gi|222424240|dbj|BAH20078.1| AT3G06850 [Arabidopsis thaliana] gi|332640945|gb|AEE74466.1| 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [Arabidopsis thaliana] gi|332640946|gb|AEE74467.1| 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query513
TAIR|locus:2083358483 BCE2 "AT3G06850" [Arabidopsis 0.830 0.881 0.662 6.2e-149
MGI|MGI:105386482 Dbt "dihydrolipoamide branched 0.810 0.863 0.425 8.2e-83
DICTYBASE|DDB_G0281797517 bkdC "dihydrolipoyl transacyla 0.865 0.858 0.397 2.2e-82
UNIPROTKB|P11182482 DBT "Lipoamide acyltransferase 0.814 0.867 0.417 2.2e-82
WB|WBGene00014054448 ZK669.4 [Caenorhabditis elegan 0.812 0.930 0.428 7.4e-82
UNIPROTKB|F1S563482 DBT "Uncharacterized protein" 0.810 0.863 0.413 3.2e-81
UNIPROTKB|E2RQG4482 DBT "Uncharacterized protein" 0.838 0.892 0.414 4.1e-81
UNIPROTKB|F1P1X9493 DBT "Uncharacterized protein" 0.820 0.853 0.417 6.6e-81
ZFIN|ZDB-GENE-050320-85493 dbt "dihydrolipoamide branched 0.826 0.860 0.401 1.1e-80
UNIPROTKB|P11181482 DBT "Lipoamide acyltransferase 0.808 0.860 0.417 9.7e-80
TAIR|locus:2083358 BCE2 "AT3G06850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1454 (516.9 bits), Expect = 6.2e-149, P = 6.2e-149
 Identities = 293/442 (66%), Positives = 352/442 (79%)

Query:    72 SRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKA 131
             SR  +SN A+A    SG++DVPLAQTGEGIAECELLKWFVKEGD +EEFQPLC VQSDKA
Sbjct:    58 SRSWFSNEAMATDSNSGLIDVPLAQTGEGIAECELLKWFVKEGDSVEEFQPLCEVQSDKA 117

Query:   132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPD 191
             TIEITSR+KGKVA + H+PG+I+KVGETL++L V DS     ++D  E V   GS+   +
Sbjct:   118 TIEITSRFKGKVALISHSPGDIIKVGETLVRLAVEDSQDSLLTTDSSEIVTLGGSKQGTE 177

Query:   192 SKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPST 251
             + L      G L+TP VRNLAK  GI++  +  TGKDGRVLKEDVL+++ QKG      T
Sbjct:   178 NLL------GALSTPAVRNLAKDLGIDINVITGTGKDGRVLKEDVLRFSDQKGFV----T 227

Query:   252 ASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVE 311
              SVS++    ++G +     T A   +  +DKTVPLRGF R MVKTM+MA  +PHFH+VE
Sbjct:   228 DSVSSE--HAVIGGDSV--STKASSNF--EDKTVPLRGFSRAMVKTMTMATSVPHFHFVE 281

Query:   312 EINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371
             EINCD+LV+LK  F+ NN+D  IKHTFLP+LIKSLSMA++KYPF+NSCFN ESLE+ILKG
Sbjct:   282 EINCDSLVELKQFFKENNTDSTIKHTFLPTLIKSLSMALTKYPFVNSCFNAESLEIILKG 341

Query:   372 SHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSN 431
             SHNIG+AMAT+HGL VPNIKNVQSLS+LEITKELSRLQ LA +N+LNP D +GGTITLSN
Sbjct:   342 SHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAANNKLNPEDVTGGTITLSN 401

Query:   432 IGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATV 491
             IGAIGGKFG+PLLNLPEVAIIA+GRIEKVP+ S +G VYP+ IM VNI ADHRVLDGATV
Sbjct:   402 IGAIGGKFGSPLLNLPEVAIIALGRIEKVPKFSKEGTVYPASIMMVNIAADHRVLDGATV 461

Query:   492 AKFCNEWKQLIENPELLLLQMR 513
             A+FC +WK+ +E PELL+LQMR
Sbjct:   462 ARFCCQWKEYVEKPELLMLQMR 483
GO:0003826 "alpha-ketoacid dehydrogenase activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS
GO:0008152 "metabolic process" evidence=IEA
GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA
GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA
GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA
GO:0048037 "cofactor binding" evidence=IEA
GO:0016407 "acetyltransferase activity" evidence=IDA
GO:0008270 "zinc ion binding" evidence=IDA
GO:0004147 "dihydrolipoamide branched chain acyltransferase activity" evidence=TAS
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
MGI|MGI:105386 Dbt "dihydrolipoamide branched chain transacylase E2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281797 bkdC "dihydrolipoyl transacylase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P11182 DBT "Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00014054 ZK669.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1S563 DBT "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQG4 DBT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1X9 DBT "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050320-85 dbt "dihydrolipoamide branched chain transacylase E2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P11181 DBT "Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8CT13ODP2_STAES2, ., 3, ., 1, ., 1, 20.34720.80310.9515yesno
Q5HQ74ODP2_STAEQ2, ., 3, ., 1, ., 1, 20.34720.80310.9515yesno
P65635ODP2_STAAM2, ., 3, ., 1, ., 1, 20.35280.80500.9604yesno
P65636ODP2_STAAN2, ., 3, ., 1, ., 1, 20.35280.80500.9604yesno
Q59821ODP2_STAAU2, ., 3, ., 1, ., 1, 20.35430.80310.9581yesno
Q23571ODB2_CAEEL2, ., 3, ., 1, ., 1, 6, 80.41920.81280.9308yesno
Q6GHZ0ODP2_STAAR2, ., 3, ., 1, ., 1, 20.35280.80500.9604yesno
P11181ODB2_BOVIN2, ., 3, ., 1, ., 1, 6, 80.40230.80700.8589yesno
P11182ODB2_HUMAN2, ., 3, ., 1, ., 1, 6, 80.41780.81480.8672yesno
Q6GAB9ODP2_STAAS2, ., 3, ., 1, ., 1, 20.35280.80500.9604yesno
Q8NX76ODP2_STAAW2, ., 3, ., 1, ., 1, 20.35280.80500.9604yesno
P53395ODB2_MOUSE2, ., 3, ., 1, ., 1, 6, 80.42150.81280.8651yesno
Q5HGY9ODP2_STAAC2, ., 3, ., 1, ., 1, 20.35280.80500.9604yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.10.766
3rd Layer2.3.1.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.3923.1
hypothetical protein (417 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_kg.C_LG_II0032
hypothetical protein (380 aa)
• •  •• 0.973
gw1.V.2491.1
hypothetical protein (391 aa)
• •  •• 0.972
eugene3.00050925
hypothetical protein (395 aa)
• •  •• 0.971
gw1.III.165.1
hypothetical protein (320 aa)
• •• •• 0.970
LPD1
precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)
• • ••• 0.966
LPD3
precursor of dehydrogenase dihydrolipoamide dehydrogenase 3 (EC-1.8.1.4) (527 aa)
• •  •• 0.939
LPD4
precursor of dehydrogenase dihydrolipoamide dehydrogenase 4 (EC-1.8.1.4) (529 aa)
• •  •• 0.938
gw1.IX.4830.1
isovaleryl-CoA dehydrogenase (EC-1.3.99.12) (388 aa)
   • •• 0.918
eugene3.00100112
annotation not avaliable (252 aa)
     •  0.899
gw1.III.1461.1
SubName- Full=Putative uncharacterized protein; (351 aa)
• •  •• 0.649

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
PLN02528416 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase 0.0
PRK11856411 PRK11856, PRK11856, branched-chain alpha-keto acid 1e-121
PRK11855547 PRK11855, PRK11855, dihydrolipoamide acetyltransfe 1e-114
COG0508404 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena 1e-102
pfam00198212 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases 7e-86
PRK11854633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 6e-64
PRK11857306 PRK11857, PRK11857, dihydrolipoamide acetyltransfe 1e-61
TIGR01348546 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase 1e-59
TIGR01349436 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase 5e-54
TIGR01347403 TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp 6e-53
PRK05704407 PRK05704, PRK05704, dihydrolipoamide succinyltrans 1e-49
TIGR02927579 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena 2e-47
PLN02744539 PLN02744, PLN02744, dihydrolipoyllysine-residue ac 2e-46
PTZ00144418 PTZ00144, PTZ00144, dihydrolipoamide succinyltrans 4e-40
PRK14843347 PRK14843, PRK14843, dihydrolipoamide acetyltransfe 3e-29
PLN02226463 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E 4e-24
cd0684974 cd06849, lipoyl_domain, Lipoyl domain of the dihyd 7e-23
PRK11855 547 PRK11855, PRK11855, dihydrolipoamide acetyltransfe 7e-16
pfam0036473 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme 3e-14
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 4e-10
pfam0281739 pfam02817, E3_binding, e3 binding domain 1e-09
PRK11854 633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 1e-07
cd0685067 cd06850, biotinyl_domain, The biotinyl-domain or b 2e-07
COG0511140 COG0511, AccB, Biotin carboxyl carrier protein [Li 2e-07
PRK11854 633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 8e-07
cd0666373 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_ 1e-05
PRK14875371 PRK14875, PRK14875, acetoin dehydrogenase E2 subun 4e-05
TIGR01348 546 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase 7e-05
PRK11892464 PRK11892, PRK11892, pyruvate dehydrogenase subunit 2e-04
TIGR027121201 TIGR02712, urea_carbox, urea carboxylase 9e-04
PRK0822570 PRK08225, PRK08225, acetyl-CoA carboxylase biotin 0.001
>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component Back     alignment and domain information 
 Score =  713 bits (1841), Expect = 0.0
 Identities = 292/422 (69%), Positives = 337/422 (79%), Gaps = 6/422 (1%)

Query: 92  VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG 151
           VPLAQTGEGIAECELL+WFVKEGD++EEFQPLC VQSDKATIEITSRYKGKVAQ+  +PG
Sbjct: 1   VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPG 60

Query: 152 NIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNL 211
           +IVKVGETLLK++V DS      S +L +          +S      + GVL+TP VR+L
Sbjct: 61  DIVKVGETLLKIMVEDSQHLRSDSLLLPTDSSNIVS-LAESDERGSNLSGVLSTPAVRHL 119

Query: 212 AKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQ 271
           AK YGI+L D+  TGKDGRVLKEDVLKYA QKG     S+A  +    +     EE    
Sbjct: 120 AKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQ-----EEFSTS 174

Query: 272 TFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSD 331
                +   +DKT+PLRGFQR MVKTM+ AAK+PHFHYVEEIN DALV+LKASFQ NN+D
Sbjct: 175 VSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQENNTD 234

Query: 332 PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIK 391
           P +KHTFLP LIKSLSMA+SKYP +NSCFNEE+ E+ LKGSHNIG+AMAT+HGL VPNIK
Sbjct: 235 PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIK 294

Query: 392 NVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAI 451
           NVQSLS+LEITKELSRLQ LA +N+LNP D +GGTITLSNIGAIGGKFG+P+LNLPEVAI
Sbjct: 295 NVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAI 354

Query: 452 IAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQ 511
           IA+GRI+KVPR  DDGNVYP+ IMTV IGADHRVLDGATVA+FCNEWK  +E PELL+L 
Sbjct: 355 IALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSYVEKPELLMLH 414

Query: 512 MR 513
           MR
Sbjct: 415 MR 416

Length = 416
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Back     alignment and domain information
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) Back     alignment and domain information
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated Back     alignment and domain information
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex Back     alignment and domain information
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information
>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases Back     alignment and domain information
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase Back     alignment and domain information
>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) Back     alignment and domain information
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase Back     alignment and domain information
>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 513
KOG0558474 consensus Dihydrolipoamide transacylase (alpha-ket 100.0
PRK05704407 dihydrolipoamide succinyltransferase; Validated 100.0
TIGR01347403 sucB 2-oxoglutarate dehydrogenase complex dihydrol 100.0
PLN02528416 2-oxoisovalerate dehydrogenase E2 component 100.0
PLN02744539 dihydrolipoyllysine-residue acetyltransferase comp 100.0
TIGR02927590 SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo 100.0
TIGR01348546 PDHac_trf_long pyruvate dehydrogenase complex dihy 100.0
TIGR01349435 PDHac_trf_mito pyruvate dehydrogenase complex dihy 100.0
COG0508404 AceF Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
PRK11854633 aceF pyruvate dehydrogenase dihydrolipoyltransacet 100.0
PLN02226463 2-oxoglutarate dehydrogenase E2 component 100.0
KOG0557470 consensus Dihydrolipoamide acetyltransferase [Ener 100.0
PRK11855547 dihydrolipoamide acetyltransferase; Reviewed 100.0
PRK11856411 branched-chain alpha-keto acid dehydrogenase subun 100.0
PTZ00144418 dihydrolipoamide succinyltransferase; Provisional 100.0
KOG0559457 consensus Dihydrolipoamide succinyltransferase (2- 100.0
PRK11857306 dihydrolipoamide acetyltransferase; Reviewed 100.0
PRK14843347 dihydrolipoamide acetyltransferase; Provisional 100.0
PF00198231 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe 100.0
PRK12270 1228 kgd alpha-ketoglutarate decarboxylase; Reviewed 100.0
PRK13757219 chloramphenicol acetyltransferase; Provisional 99.94
PF00302206 CAT: Chloramphenicol acetyltransferase; InterPro: 99.94
COG4845219 Chloramphenicol O-acetyltransferase [Defense mecha 99.87
PRK14875371 acetoin dehydrogenase E2 subunit dihydrolipoyllysi 99.74
PF0036474 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: 99.74
PRK0674883 hypothetical protein; Validated 99.64
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 99.53
PRK0588971 putative acetyl-CoA carboxylase biotin carboxyl ca 99.52
cd0666373 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar 99.47
COG0511140 AccB Biotin carboxyl carrier protein [Lipid metabo 99.46
PRK0822570 acetyl-CoA carboxylase biotin carboxyl carrier pro 99.42
PRK11854 633 aceF pyruvate dehydrogenase dihydrolipoyltransacet 99.4
TIGR02927 590 SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo 99.38
PF0281739 E3_binding: e3 binding domain; InterPro: IPR004167 99.35
PRK06549130 acetyl-CoA carboxylase biotin carboxyl carrier pro 99.31
PRK11855 547 dihydrolipoamide acetyltransferase; Reviewed 99.3
PRK05641153 putative acetyl-CoA carboxylase biotin carboxyl ca 99.26
TIGR01348 546 PDHac_trf_long pyruvate dehydrogenase complex dihy 99.25
PRK0705180 hypothetical protein; Validated 99.22
PLN02983274 biotin carboxyl carrier protein of acetyl-CoA carb 99.2
cd0685067 biotinyl_domain The biotinyl-domain or biotin carb 99.2
TIGR00531156 BCCP acetyl-CoA carboxylase, biotin carboxyl carri 99.18
PRK06302155 acetyl-CoA carboxylase biotin carboxyl carrier pro 99.12
cd0684974 lipoyl_domain Lipoyl domain of the dihydrolipoyl a 99.12
PRK14042596 pyruvate carboxylase subunit B; Provisional 99.08
TIGR027121201 urea_carbox urea carboxylase. Members of this fami 98.97
TIGR01108582 oadA oxaloacetate decarboxylase alpha subunit. Thi 98.9
PRK14040593 oxaloacetate decarboxylase; Provisional 98.89
TIGR012351143 pyruv_carbox pyruvate carboxylase. This enzyme pla 98.85
PRK09282592 pyruvate carboxylase subunit B; Validated 98.79
COG4770645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 98.71
PRK129991146 pyruvate carboxylase; Reviewed 98.67
COG10381149 PycA Pyruvate carboxylase [Energy production and c 98.48
KOG03691176 consensus Pyruvate carboxylase [Energy production 98.27
cd0684896 GCS_H Glycine cleavage H-protein. Glycine cleavage 98.13
KOG0238670 consensus 3-Methylcrotonyl-CoA carboxylase, biotin 98.0
KOG0368 2196 consensus Acetyl-CoA carboxylase [Lipid transport 97.87
TIGR03077110 not_gcvH glycine cleavage protein H-like protein, 97.82
PRK09783409 copper/silver efflux system membrane fusion protei 97.75
PRK00624114 glycine cleavage system protein H; Provisional 97.74
TIGR00998334 8a0101 efflux pump membrane protein (multidrug res 97.71
PRK13380144 glycine cleavage system protein H; Provisional 97.64
PRK10559310 p-hydroxybenzoic acid efflux subunit AaeA; Provisi 97.62
TIGR01730322 RND_mfp RND family efflux transporter, MFP subunit 97.58
PRK14843347 dihydrolipoamide acetyltransferase; Provisional 97.55
PRK10476346 multidrug resistance protein MdtN; Provisional 97.54
PRK01202127 glycine cleavage system protein H; Provisional 97.54
PRK15136390 multidrug efflux system protein EmrA; Provisional 97.39
PRK09578385 periplasmic multidrug efflux lipoprotein precursor 97.34
PRK03598331 putative efflux pump membrane fusion protein; Prov 97.3
PRK15030397 multidrug efflux system transporter AcrA; Provisio 97.27
PF1353350 Biotin_lipoyl_2: Biotin-lipoyl like 97.26
PRK09859385 multidrug efflux system protein MdtE; Provisional 97.22
PF1353350 Biotin_lipoyl_2: Biotin-lipoyl like 97.16
TIGR00527127 gcvH glycine cleavage system H protein. The genome 97.13
PRK11556415 multidrug efflux system subunit MdtA; Provisional 97.05
PRK11578370 macrolide transporter subunit MacA; Provisional 97.0
PRK1278484 hypothetical protein; Provisional 96.81
PF01597122 GCV_H: Glycine cleavage H-protein; InterPro: IPR00 96.76
PF12700328 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 96.73
TIGR02971327 heterocyst_DevB ABC exporter membrane fusion prote 96.73
TIGR03309256 matur_yqeB selenium-dependent molybdenum hydroxyla 96.57
PRK0588971 putative acetyl-CoA carboxylase biotin carboxyl ca 96.45
COG0509131 GcvH Glycine cleavage system H protein (lipoate-bi 96.27
PRK0674883 hypothetical protein; Validated 95.87
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 95.73
TIGR00999265 8a0102 Membrane Fusion Protein cluster 2 (function 95.6
PRK0822570 acetyl-CoA carboxylase biotin carboxyl carrier pro 95.13
cd0685067 biotinyl_domain The biotinyl-domain or biotin carb 94.99
cd06253298 M14_ASTE_ASPA_like_3 A functionally uncharacterize 94.93
PF13375101 RnfC_N: RnfC Barrel sandwich hybrid domain 94.91
COG0511140 AccB Biotin carboxyl carrier protein [Lipid metabo 94.74
COG1566352 EmrA Multidrug resistance efflux pump [Defense mec 94.63
cd06251287 M14_ASTE_ASPA_like_1 A functionally uncharacterize 94.62
cd06252316 M14_ASTE_ASPA_like_2 A functionally uncharacterize 94.31
cd06250359 M14_PaAOTO_like An uncharacterized subgroup of the 94.27
TIGR02994325 ectoine_eutE ectoine utilization protein EutE. Mem 93.8
PRK06549130 acetyl-CoA carboxylase biotin carboxyl carrier pro 93.72
PF13437105 HlyD_3: HlyD family secretion protein 93.64
COG3608331 Predicted deacylase [General function prediction o 93.62
PRK0705180 hypothetical protein; Validated 93.34
PF05896257 NQRA: Na(+)-translocating NADH-quinone reductase s 93.01
PF0036474 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: 93.01
TIGR012351143 pyruv_carbox pyruvate carboxylase. This enzyme pla 92.98
PRK05641153 putative acetyl-CoA carboxylase biotin carboxyl ca 92.85
PF00529305 HlyD: HlyD family secretion protein the correspond 92.62
PRK10476346 multidrug resistance protein MdtN; Provisional 92.59
PF09891150 DUF2118: Uncharacterized protein conserved in arch 92.59
TIGR02971327 heterocyst_DevB ABC exporter membrane fusion prote 92.55
cd06254288 M14_ASTE_ASPA_like_4 A functionally uncharacterize 92.45
TIGR00998334 8a0101 efflux pump membrane protein (multidrug res 92.02
PRK11556415 multidrug efflux system subunit MdtA; Provisional 91.81
PF07247480 AATase: Alcohol acetyltransferase; InterPro: IPR01 91.59
PRK09859385 multidrug efflux system protein MdtE; Provisional 91.26
PF12700328 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 90.89
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 90.89
PRK11578370 macrolide transporter subunit MacA; Provisional 90.76
TIGR02946446 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b 90.57
PF00529305 HlyD: HlyD family secretion protein the correspond 90.56
TIGR01936447 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo 90.3
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 90.25
TIGR03794421 NHPM_micro_HlyD NHPM bacteriocin system secretion 90.21
PRK09578385 periplasmic multidrug efflux lipoprotein precursor 90.13
TIGR01730322 RND_mfp RND family efflux transporter, MFP subunit 90.04
PRK10559310 p-hydroxybenzoic acid efflux subunit AaeA; Provisi 89.74
PRK15136390 multidrug efflux system protein EmrA; Provisional 89.56
PF0783175 PYNP_C: Pyrimidine nucleoside phosphorylase C-term 89.29
COG1726447 NqrA Na+-transporting NADH:ubiquinone oxidoreducta 88.72
PRK03598331 putative efflux pump membrane fusion protein; Prov 88.69
PRK14042596 pyruvate carboxylase subunit B; Provisional 88.67
PRK05352448 Na(+)-translocating NADH-quinone reductase subunit 88.14
PF13437105 HlyD_3: HlyD family secretion protein 87.96
PRK09783409 copper/silver efflux system membrane fusion protei 87.1
PRK15030397 multidrug efflux system transporter AcrA; Provisio 87.03
PF00668 301 Condensation: Condensation domain; InterPro: IPR00 86.87
TIGR00531156 BCCP acetyl-CoA carboxylase, biotin carboxyl carri 86.72
cd00210124 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s 86.48
KOG3373172 consensus Glycine cleavage system H protein (lipoa 86.43
TIGR01945435 rnfC electron transport complex, RnfABCDGE type, C 86.33
PLN02983274 biotin carboxyl carrier protein of acetyl-CoA carb 86.21
cd06255293 M14_ASTE_ASPA_like_5 A functionally uncharacterize 86.18
PLN02226463 2-oxoglutarate dehydrogenase E2 component 86.06
PRK06302155 acetyl-CoA carboxylase biotin carboxyl carrier pro 85.89
PRK09439169 PTS system glucose-specific transporter subunit; P 85.45
PF00358132 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph 85.32
PRK05035 695 electron transport complex protein RnfC; Provision 85.29
KOG0559457 consensus Dihydrolipoamide succinyltransferase (2- 85.25
TIGR03794421 NHPM_micro_HlyD NHPM bacteriocin system secretion 84.5
TIGR01108582 oadA oxaloacetate decarboxylase alpha subunit. Thi 83.8
PRK14040593 oxaloacetate decarboxylase; Provisional 83.66
TIGR00830121 PTBA PTS system, glucose subfamily, IIA component. 83.59
PF04952292 AstE_AspA: Succinylglutamate desuccinylase / Aspar 83.45
COG0845372 AcrA Membrane-fusion protein [Cell envelope biogen 83.4
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 83.4
TIGR00164189 PS_decarb_rel phosphatidylserine decarboxylase pre 83.37
PF0274988 QRPTase_N: Quinolinate phosphoribosyl transferase, 83.3
PRK09282592 pyruvate carboxylase subunit B; Validated 82.65
COG2190156 NagE Phosphotransferase system IIA components [Car 82.61
COG4072161 Uncharacterized protein conserved in archaea [Func 82.04
PRK05305206 phosphatidylserine decarboxylase; Provisional 81.71
COG2190156 NagE Phosphotransferase system IIA components [Car 81.53
COG0508404 AceF Pyruvate/2-oxoglutarate dehydrogenase complex 80.63
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-96  Score=717.65  Aligned_cols=429  Identities=55%  Similarity=0.843  Sum_probs=373.6

Q ss_pred             ccccceeccccccCCCCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeC
Q 010300           70 MVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA  149 (513)
Q Consensus        70 ~~~r~~~~~~~~~~~~~~~~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~  149 (513)
                      +..|.||++.+..+.....++.|++.|+||||.|+++.+|+|||||.|++.|.||||++||++++|++.|+|+|++|+..
T Consensus        45 ~~~~s~~~~~~~~t~s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~  124 (474)
T KOG0558|consen   45 GGSRSWFSNEAMATDSNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHS  124 (474)
T ss_pred             CccccccchhhhhcccccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeC
Confidence            67889999998887777779999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeecccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCC
Q 010300          150 PGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDG  229 (513)
Q Consensus       150 ~g~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~G  229 (513)
                      .+|...+|++|..++.++.++......+.+.....+      +........++++||+||+||+|+||||+.|.|||++|
T Consensus       125 ~ddia~VGk~Lvd~eve~~~ds~e~s~es~~vs~~~------~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdG  198 (474)
T KOG0558|consen  125 PDDIAKVGKPLVDLEVEDSQDSPEDSDESPAVSLGE------SKQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDG  198 (474)
T ss_pred             chhhhHhCcceeeeeeccCcCCcccCCccccccCCC------CchhhhhccccccCHHHHHHHHHhCCceEeeeccCCCC
Confidence            999999999999999776543322211111110000      01111223457899999999999999999999999999


Q ss_pred             ceeHHHHHHHHHhcCCCCCCCCcccccchhhhccCCCCCCCccccccc-CCCCCccccCchhHHHHHHHHHHhccccEEE
Q 010300          230 RVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVK-WYPDDKTVPLRGFQRTMVKTMSMAAKIPHFH  308 (513)
Q Consensus       230 rItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vp~s~~rr~ia~~m~~s~~iP~~~  308 (513)
                      ||+||||++|+.+....-.++....-...         +.+.+..... .-..|+++|++|++|+|.+.|+++.+||||.
T Consensus       199 RvLKeDvL~fl~q~pg~~~~~~~~~~a~~---------~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~  269 (474)
T KOG0558|consen  199 RVLKEDVLRFLGQVPGFVTDPSPSEHAVI---------PGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEALKIPHFG  269 (474)
T ss_pred             cchHHHHHHHhccCCCCccCCCCceeecC---------CCCCCcccccCcccccceeechhHHHHHHHHHHHHhcCCccc
Confidence            99999999999764221111111100000         0011111111 2234889999999999999999999999999


Q ss_pred             EeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEee
Q 010300          309 YVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVP  388 (513)
Q Consensus       309 ~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~p  388 (513)
                      ++.|||||.|+++|.+++....+.|+|+||++|+|||++.||.+||.+|+.++++..+|+++.++|||+||+|+.||++|
T Consensus       270 y~dEIn~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVP  349 (474)
T KOG0558|consen  270 YVDEINCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVP  349 (474)
T ss_pred             cccccChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceecc
Confidence            99999999999999999998889999999999999999999999999999999887789999999999999999999999


Q ss_pred             eeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCc
Q 010300          389 NIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGN  468 (513)
Q Consensus       389 vI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~  468 (513)
                      .|+|++.+|+.||++++++|+++.+.|+|+++|+.|||||+||+|.+|+++..|+|++||+||.++|+|.+.|.|++.|+
T Consensus       350 NiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~  429 (474)
T KOG0558|consen  350 NIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGE  429 (474)
T ss_pred             CccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhhcCC
Q 010300          469 VYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR  513 (513)
Q Consensus       469 i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~~  513 (513)
                      ++...+|.|+|++||||+||+..|||.+.||+|||||+.|||+||
T Consensus       430 V~~a~IM~VswsADHRViDGaTmarFsn~WK~YlE~Pa~mll~lk  474 (474)
T KOG0558|consen  430 VYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALMLLQLK  474 (474)
T ss_pred             EEEeEEEEEEeecCceeeccHHHHHHHHHHHHHhhCHHHHhhccC
Confidence            999999999999999999999999999999999999999999996

>PRK05704 dihydrolipoamide succinyltransferase; Validated Back     alignment and domain information
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) Back     alignment and domain information
>PLN02528 2-oxoisovalerate dehydrogenase E2 component Back     alignment and domain information
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex Back     alignment and domain information
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>PLN02226 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion] Back     alignment and domain information
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Back     alignment and domain information
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] Back     alignment and domain information
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>PRK14843 dihydrolipoamide acetyltransferase; Provisional Back     alignment and domain information
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2 Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>PRK13757 chloramphenicol acetyltransferase; Provisional Back     alignment and domain information
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2 Back     alignment and domain information
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms] Back     alignment and domain information
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional Back     alignment and domain information
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid Back     alignment and domain information
>PRK06748 hypothetical protein; Validated Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Back     alignment and domain information
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) Back     alignment and domain information
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] Back     alignment and domain information
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit Back     alignment and domain information
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>PRK07051 hypothetical protein; Validated Back     alignment and domain information
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase Back     alignment and domain information
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein Back     alignment and domain information
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>cd06848 GCS_H Glycine cleavage H-protein Back     alignment and domain information
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial Back     alignment and domain information
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional Back     alignment and domain information
>PRK00624 glycine cleavage system protein H; Provisional Back     alignment and domain information
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A) Back     alignment and domain information
>PRK13380 glycine cleavage system protein H; Provisional Back     alignment and domain information
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional Back     alignment and domain information
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit Back     alignment and domain information
>PRK14843 dihydrolipoamide acetyltransferase; Provisional Back     alignment and domain information
>PRK10476 multidrug resistance protein MdtN; Provisional Back     alignment and domain information
>PRK01202 glycine cleavage system protein H; Provisional Back     alignment and domain information
>PRK15136 multidrug efflux system protein EmrA; Provisional Back     alignment and domain information
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed Back     alignment and domain information
>PRK03598 putative efflux pump membrane fusion protein; Provisional Back     alignment and domain information
>PRK15030 multidrug efflux system transporter AcrA; Provisional Back     alignment and domain information
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like Back     alignment and domain information
>PRK09859 multidrug efflux system protein MdtE; Provisional Back     alignment and domain information
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like Back     alignment and domain information
>TIGR00527 gcvH glycine cleavage system H protein Back     alignment and domain information
>PRK11556 multidrug efflux system subunit MdtA; Provisional Back     alignment and domain information
>PRK11578 macrolide transporter subunit MacA; Provisional Back     alignment and domain information
>PRK12784 hypothetical protein; Provisional Back     alignment and domain information
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C Back     alignment and domain information
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family Back     alignment and domain information
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family Back     alignment and domain information
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Back     alignment and domain information
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06748 hypothetical protein; Validated Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters) Back     alignment and domain information
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase Back     alignment and domain information
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain Back     alignment and domain information
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] Back     alignment and domain information
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms] Back     alignment and domain information
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases Back     alignment and domain information
>TIGR02994 ectoine_eutE ectoine utilization protein EutE Back     alignment and domain information
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PF13437 HlyD_3: HlyD family secretion protein Back     alignment and domain information
>COG3608 Predicted deacylase [General function prediction only] Back     alignment and domain information
>PRK07051 hypothetical protein; Validated Back     alignment and domain information
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins Back     alignment and domain information
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry Back     alignment and domain information
>PRK10476 multidrug resistance protein MdtN; Provisional Back     alignment and domain information
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function Back     alignment and domain information
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family Back     alignment and domain information
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A) Back     alignment and domain information
>PRK11556 multidrug efflux system subunit MdtA; Provisional Back     alignment and domain information
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2 Back     alignment and domain information
>PRK09859 multidrug efflux system protein MdtE; Provisional Back     alignment and domain information
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>PRK11578 macrolide transporter subunit MacA; Provisional Back     alignment and domain information
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT Back     alignment and domain information
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry Back     alignment and domain information
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein Back     alignment and domain information
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed Back     alignment and domain information
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit Back     alignment and domain information
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional Back     alignment and domain information
>PRK15136 multidrug efflux system protein EmrA; Provisional Back     alignment and domain information
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ] Back     alignment and domain information
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion] Back     alignment and domain information
>PRK03598 putative efflux pump membrane fusion protein; Provisional Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional Back     alignment and domain information
>PF13437 HlyD_3: HlyD family secretion protein Back     alignment and domain information
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional Back     alignment and domain information
>PRK15030 multidrug efflux system transporter AcrA; Provisional Back     alignment and domain information
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics Back     alignment and domain information
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein Back     alignment and domain information
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit Back     alignment and domain information
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit Back     alignment and domain information
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>PLN02226 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PRK09439 PTS system glucose-specific transporter subunit; Provisional Back     alignment and domain information
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria Back     alignment and domain information
>PRK05035 electron transport complex protein RnfC; Provisional Back     alignment and domain information
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] Back     alignment and domain information
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component Back     alignment and domain information
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3 Back     alignment and domain information
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein Back     alignment and domain information
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4072 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PRK05305 phosphatidylserine decarboxylase; Provisional Back     alignment and domain information
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
3duf_I428 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 6e-63
2ihw_A262 Crystal Structure Of A Cubic Core Of The Dihydrolip 3e-59
1b5s_A242 Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt 3e-41
3rqc_A224 Crystal Structure Of The Catalytic Core Of The 2-Ox 2e-30
3l60_A250 Crystal Structure Of Branched-Chain Alpha-Keto Acid 7e-26
3mae_A256 Crystal Structure Of Probable Dihydrolipamide Acety 3e-23
1c4t_A233 Catalytic Domain From Trimeric Dihydrolipoamide Suc 8e-21
1dpc_A243 Crystallographic And Enzymatic Investigations On Th 4e-18
3b8k_A239 Structure Of The Truncated Human Dihydrolipoyl Acet 5e-18
1eaa_A243 Atomic Structure Of The Cubic Core Of The Pyruvate 2e-17
1dpd_A243 Crystallographic And Enzymatic Investigations On Th 4e-17
1dpb_A243 Crystallographic And Enzymatic Investigations On Th 4e-16
1lab_A80 Three-Dimensional Structure Of The Lipoyl Domain Fr 2e-13
1k8o_A93 Solution Structure Of The Lipoic Acid-Bearing Domai 7e-13
2l5t_A77 Solution Nmr Structure Of E2 Lipoyl Domain From The 2e-11
2xt6_A 1113 Crystal Structure Of Mycobacterium Smegmatis Alpha- 7e-08
3rnm_E58 The Crystal Structure Of The Subunit Binding Of Hum 9e-06
2coo_A70 Solution Structure Of The E3_binding Domain Of Dihy 1e-05
1zwv_A58 Solution Structure Of The Subunit Binding Domain (H 7e-05
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428 Back     alignment and structure 
Iteration: 1

 Score =  238 bits (607), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 147/451 (32%), Positives = 233/451 (51%), Gaps = 63/451 (13%)
Query: 94  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
           L   GEGI E E++KWFVK GDE+ E   LC VQ+DKA +EI S  KGKV ++L   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 66
Query: 154 VKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSEN--------------------SPDSK 193
             VG+TL+ L                    PG EN                    S + K
Sbjct: 67  ATVGQTLITL------------------DAPGYENMTFKGQEQEEAKKEEKTETVSKEEK 108
Query: 194 LNKDTVGG------------VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241
           ++                  V+A P+VR  A+  G+++  V  TGK+GRVLKED+  +  
Sbjct: 109 VDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 168
Query: 242 QKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA 301
                   +    +A    +    E  +P+T  +           + G +R + K M  +
Sbjct: 169 GGAKPAPAAAEEKAAPAAAKPATTEGEFPETREK-----------MSGIRRAIAKAMVHS 217
Query: 302 AKI-PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF 360
               PH   ++E +   LV  +  F+   ++  IK TFLP ++K+L  A+ +YP +N+  
Sbjct: 218 KHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSI 277
Query: 361 NEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPA 420
           ++E+ E+I K  +NIGIA  T  GL VP IK+     I  + +E++ L + A+D +L P 
Sbjct: 278 DDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPG 337
Query: 421 DNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIG 480
           +  G + T++NIG+ GG++  P++N PEVAI+ +GRI + P +  DG +  +P++ +++ 
Sbjct: 338 EMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKP-IVRDGEIVAAPMLALSLS 396
Query: 481 ADHRVLDGATVAKFCNEWKQLIENPELLLLQ 511
            DHR++DGAT  K  N  K+L+ +PELLL++
Sbjct: 397 FDHRMIDGATAQKALNHIKRLLSDPELLLME 427
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262 Back     alignment and structure
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242 Back     alignment and structure
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224 Back     alignment and structure
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250 Back     alignment and structure
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256 Back     alignment and structure
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233 Back     alignment and structure
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 Back     alignment and structure
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239 Back     alignment and structure
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243 Back     alignment and structure
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 Back     alignment and structure
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 Back     alignment and structure
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80 Back     alignment and structure
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of The E2 Component Of Human, Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 93 Back     alignment and structure
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77 Back     alignment and structure
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113 Back     alignment and structure
>pdb|3RNM|E Chain E, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 58 Back     alignment and structure
>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of Dihydrolipoamide Branched Chaintransacylase Length = 70 Back     alignment and structure
>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd) Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 58 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
3dva_I428 Dihydrolipoyllysine-residue acetyltransferase comp 1e-117
2ii3_A262 Lipoamide acyltransferase component of branched-C 1e-107
1dpb_A243 Dihydrolipoyl-transacetylase; dihydrolipoamide ace 2e-73
3l60_A250 Branched-chain alpha-keto acid dehydrogenase; stru 2e-71
3rqc_A224 Probable lipoamide acyltransferase; alpha beta fol 2e-60
3b8k_A239 PDCE2;, dihydrolipoyllysine-residue acetyltransfer 9e-58
3mae_A256 2-oxoisovalerate dehydrogenase E2 component, dihyd 3e-45
1scz_A233 E2, dihydrolipoamide succinyltransferase; COA-depe 2e-35
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 2e-33
1zy8_K229 Pyruvate dehydrogenase protein X component, mitoch 3e-28
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 1e-25
3cla_A213 Type III chloramphenicol acetyltransferase; transf 2e-25
1q23_A219 Chloramphenicol acetyltransferase; CAT I, trimer, 3e-25
2i9d_A217 Chloramphenicol acetyltransferase; structural geno 3e-21
2coo_A70 Lipoamide acyltransferase component of branched- c 1e-15
3rnm_E58 Lipoamide acyltransferase component of branched-C 4e-14
1w4i_A62 Pyruvate dehydrogenase E2; transferase, peripheral 1e-12
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 4e-12
2eq7_C40 2-oxoglutarate dehydrogenase E2 component; protein 5e-12
1w85_I49 Dihydrolipoyllysine-residue acetyltransferase comp 4e-11
2eq9_C41 Pyruvate dehydrogenase complex, dihydrolipoamide a 7e-11
2k7v_A85 Dihydrolipoyllysine-residue acetyltransferase comp 8e-11
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 3e-10
1bal_A51 Dihydrolipoamide succinyltransferase; glycolysis; 6e-10
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 7e-10
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 7e-10
2eq8_C40 Pyruvate dehydrogenase complex, dihydrolipoamide a 8e-10
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 8e-10
1pmr_A80 Dihydrolipoyl succinyltransferase; 2-oxoglutarate 1e-09
1gjx_A81 Pyruvate dehydrogenase; oxidoreductase, lipoyl dom 2e-09
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 2e-09
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 9e-09
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 1e-08
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 2e-08
3va7_A1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 8e-07
1z6h_A72 Biotin/lipoyl attachment protein; solution structu 6e-06
2f60_K64 Pyruvate dehydrogenase protein X component; protei 3e-05
1dcz_A77 Transcarboxylase 1.3S subunit; antiparallel beta s 8e-05
2jku_A94 Propionyl-COA carboxylase alpha chain, mitochondri 1e-04
3bg3_A718 Pyruvate carboxylase, mitochondrial; TIM barrel, A 1e-04
2d5d_A74 Methylmalonyl-COA decarboxylase gamma chain; bioti 2e-04
2ejm_A99 Methylcrotonoyl-COA carboxylase subunit alpha; bio 3e-04
3u9t_A675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 4e-04
3n6r_A681 Propionyl-COA carboxylase, alpha subunit; protein 6e-04
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428 Back     alignment and structure
 Score =  350 bits (901), Expect = e-117
 Identities = 146/437 (33%), Positives = 232/437 (53%), Gaps = 27/437 (6%)

Query: 89  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
             +  L   GEGI E E++KWFVK GDE+ E   LC VQ+DKA +EI S  KGKV ++L 
Sbjct: 2   AFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILV 61

Query: 149 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVK--------------PPGSENSPDSKL 194
             G +  VG+TL+ L        T      E  K                 + N+P ++ 
Sbjct: 62  PEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEA 121

Query: 195 NKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASV 254
                  V+A P+VR  A+  G+++  V  TGK+GRVLKED+  +          +    
Sbjct: 122 EAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEK 181

Query: 255 SADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEI 313
           +A    +    E  +P+T              + G +R + K M  +    PH   ++E 
Sbjct: 182 AAPAAAKPATTEGEFPET-----------REKMSGIRRAIAKAMVHSKHTAPHVTLMDEA 230

Query: 314 NCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSH 373
           +   LV  +  F+   ++  IK TFLP ++K+L  A+ +YP +N+  ++E+ E+I K  +
Sbjct: 231 DVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYY 290

Query: 374 NIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIG 433
           NIGIA  T  GL VP IK+     I  + +E++ L + A+D +L P +  G + T++NIG
Sbjct: 291 NIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIG 350

Query: 434 AIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAK 493
           + GG++  P++N PEVAI+ +GRI + P +  DG +  +P++ +++  DHR++DGAT  K
Sbjct: 351 SAGGQWFTPVINHPEVAILGIGRIAEKPIV-RDGEIVAAPMLALSLSFDHRMIDGATAQK 409

Query: 494 FCNEWKQLIENPELLLL 510
             N  K+L+ +PELLL+
Sbjct: 410 ALNHIKRLLSDPELLLM 426
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262 Back     alignment and structure
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243 Back     alignment and structure
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250 Back     alignment and structure
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224 Back     alignment and structure
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239 Back     alignment and structure
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256 Back     alignment and structure
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233 Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93 Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77 Back     alignment and structure
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213 Back     alignment and structure
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219 Back     alignment and structure
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217 Back     alignment and structure
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB: 1zwv_A Length = 58 Back     alignment and structure
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62 Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113 Back     alignment and structure
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Length = 40 Back     alignment and structure
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49 Back     alignment and structure
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus} Length = 41 Back     alignment and structure
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85 Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 Back     alignment and structure
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Length = 51 Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84 Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 Back     alignment and structure
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus} Length = 40 Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79 Back     alignment and structure
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 Back     alignment and structure
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81 Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79 Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108 Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128 Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87 Back     alignment and structure
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72 Back     alignment and structure
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Length = 64 Back     alignment and structure
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77 Back     alignment and structure
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94 Back     alignment and structure
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718 Back     alignment and structure
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74 Back     alignment and structure
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query513
3dva_I428 Dihydrolipoyllysine-residue acetyltransferase comp 100.0
2ii3_A262 Lipoamide acyltransferase component of branched-C 100.0
3l60_A250 Branched-chain alpha-keto acid dehydrogenase; stru 100.0
1dpb_A243 Dihydrolipoyl-transacetylase; dihydrolipoamide ace 100.0
1scz_A233 E2, dihydrolipoamide succinyltransferase; COA-depe 100.0
3mae_A256 2-oxoisovalerate dehydrogenase E2 component, dihyd 100.0
3rqc_A224 Probable lipoamide acyltransferase; alpha beta fol 100.0
3b8k_A239 PDCE2;, dihydrolipoyllysine-residue acetyltransfer 100.0
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
1q23_A219 Chloramphenicol acetyltransferase; CAT I, trimer, 100.0
3cla_A213 Type III chloramphenicol acetyltransferase; transf 100.0
2i9d_A217 Chloramphenicol acetyltransferase; structural geno 100.0
1zy8_K229 Pyruvate dehydrogenase protein X component, mitoch 99.96
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 99.76
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 99.76
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 99.75
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 99.75
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 99.73
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 99.69
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 99.65
1pmr_A80 Dihydrolipoyl succinyltransferase; 2-oxoglutarate 99.64
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 99.64
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 99.6
1gjx_A81 Pyruvate dehydrogenase; oxidoreductase, lipoyl dom 99.57
2k7v_A85 Dihydrolipoyllysine-residue acetyltransferase comp 99.42
1z6h_A72 Biotin/lipoyl attachment protein; solution structu 99.34
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 99.32
2jku_A94 Propionyl-COA carboxylase alpha chain, mitochondri 99.28
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 99.27
2ejm_A99 Methylcrotonoyl-COA carboxylase subunit alpha; bio 99.23
2d5d_A74 Methylmalonyl-COA decarboxylase gamma chain; bioti 99.23
2eq9_C41 Pyruvate dehydrogenase complex, dihydrolipoamide a 99.22
2eq8_C40 Pyruvate dehydrogenase complex, dihydrolipoamide a 99.2
1dcz_A77 Transcarboxylase 1.3S subunit; antiparallel beta s 99.2
1bdo_A80 Acetyl-COA carboxylase; BCCPSC, carboxyl transfera 99.19
2eq7_C40 2-oxoglutarate dehydrogenase E2 component; protein 99.18
3rnm_E58 Lipoamide acyltransferase component of branched-C 99.18
1w4i_A62 Pyruvate dehydrogenase E2; transferase, peripheral 99.11
1w85_I49 Dihydrolipoyllysine-residue acetyltransferase comp 99.11
3n6r_A681 Propionyl-COA carboxylase, alpha subunit; protein 99.08
1bal_A51 Dihydrolipoamide succinyltransferase; glycolysis; 99.08
2coo_A70 Lipoamide acyltransferase component of branched- c 99.05
3va7_A1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 99.02
3hbl_A1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 99.0
3u9t_A675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 98.99
2f60_K64 Pyruvate dehydrogenase protein X component; protei 98.98
2k32_A116 A; NMR {Campylobacter jejuni} PDB: 2k33_A* 98.8
3bg3_A718 Pyruvate carboxylase, mitochondrial; TIM barrel, A 98.73
1zko_A136 Glycine cleavage system H protein; TM0212, structu 98.71
2qf7_A1165 Pyruvate carboxylase protein; multi-domain, multi- 98.67
1onl_A128 Glycine cleavage system H protein; hybrid barrel-s 98.23
1hpc_A131 H protein of the glycine cleavage system; transit 98.23
3a7l_A128 H-protein, glycine cleavage system H protein; lipo 98.21
3ne5_B413 Cation efflux system protein CUSB; transmembrane h 97.8
2f1m_A277 Acriflavine resistance protein A; helical hairpin, 97.78
3lnn_A359 Membrane fusion protein (MFP) heavy metal cation Z 97.76
3fpp_A341 Macrolide-specific efflux protein MACA; hexameric 97.71
3klr_A125 Glycine cleavage system H protein; antiparallel be 97.6
3mxu_A143 Glycine cleavage system H protein; seattle structu 97.47
1vf7_A369 Multidrug resistance protein MEXA; alpha hairpin, 97.45
3tzu_A137 GCVH, glycine cleavage system H protein 1; ssgcid, 97.37
3hgb_A155 Glycine cleavage system H protein; ssgcid, niaid, 97.13
4dk0_A369 Putative MACA; alpha-hairpin, lipoyl, beta-barrel, 97.0
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 96.63
3na6_A331 Succinylglutamate desuccinylase/aspartoacylase; st 96.24
3cdx_A354 Succinylglutamatedesuccinylase/aspartoacylase; str 96.16
3fmc_A368 Putative succinylglutamate desuccinylase / aspart; 95.84
1z6h_A72 Biotin/lipoyl attachment protein; solution structu 95.83
1dcz_A77 Transcarboxylase 1.3S subunit; antiparallel beta s 95.73
2d5d_A74 Methylmalonyl-COA decarboxylase gamma chain; bioti 95.68
2k32_A116 A; NMR {Campylobacter jejuni} PDB: 2k33_A* 95.31
1f3z_A161 EIIA-GLC, glucose-specific phosphocarrier; phospho 95.23
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 95.1
2gpr_A154 Glucose-permease IIA component; phosphotransferase 94.88
1ax3_A162 Iiaglc, glucose permease IIA domain; phosphotransf 94.63
2ejm_A99 Methylcrotonoyl-COA carboxylase subunit alpha; bio 94.24
2xha_A193 NUSG, transcription antitermination protein NUSG; 93.97
2jku_A94 Propionyl-COA carboxylase alpha chain, mitochondri 93.87
2f1m_A277 Acriflavine resistance protein A; helical hairpin, 93.77
2qj8_A332 MLR6093 protein; structural genomics, joint center 93.54
1bdo_A80 Acetyl-COA carboxylase; BCCPSC, carboxyl transfera 93.43
3lnn_A359 Membrane fusion protein (MFP) heavy metal cation Z 93.31
3fpp_A341 Macrolide-specific efflux protein MACA; hexameric 92.7
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 92.6
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 91.69
3d4r_A169 Domain of unknown function from the PFAM-B_34464; 91.59
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 91.57
2xhc_A352 Transcription antitermination protein NUSG; 2.45A 91.36
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 90.8
1gjx_A81 Pyruvate dehydrogenase; oxidoreductase, lipoyl dom 90.61
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 90.6
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 90.51
2k7v_A85 Dihydrolipoyllysine-residue acetyltransferase comp 89.93
1vf7_A369 Multidrug resistance protein MEXA; alpha hairpin, 89.83
3ne5_B413 Cation efflux system protein CUSB; transmembrane h 89.82
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 89.41
2xha_A193 NUSG, transcription antitermination protein NUSG; 89.06
2auk_A190 DNA-directed RNA polymerase beta' chain; sandwich- 88.13
4dk0_A369 Putative MACA; alpha-hairpin, lipoyl, beta-barrel, 87.66
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 87.66
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 87.14
1pmr_A80 Dihydrolipoyl succinyltransferase; 2-oxoglutarate 86.89
4hvm_A 493 Tlmii; PSI-biology, midwest center for structural 85.63
3n6r_A681 Propionyl-COA carboxylase, alpha subunit; protein 85.08
3our_B183 EIIA, phosphotransferase system IIA component; exh 84.74
3va7_A1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 80.66
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Back     alignment and structure
Probab=100.00  E-value=1.2e-93  Score=756.98  Aligned_cols=411  Identities=35%  Similarity=0.577  Sum_probs=39.4

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 010300           90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA  169 (513)
Q Consensus        90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~  169 (513)
                      ++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|.+|++|+.|+.++++
T Consensus         3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~   82 (428)
T 3dva_I            3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGYE   82 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999875543


Q ss_pred             CCCCC--C--CC---CCCCCCCCCCC---CCCC--C-C-CCCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHH
Q 010300          170 VPTPS--S--DV---LESVKPPGSEN---SPDS--K-L-NKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKED  235 (513)
Q Consensus       170 ~~~~~--~--~~---~~~~~~~~~~~---~~~~--~-~-~~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~D  235 (513)
                      .....  .  ..   +.+........   ..+.  . + ......++.+||+||+||+|+||||+.|+|||++|||+|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k~D  162 (428)
T 3dva_I           83 NMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKED  162 (428)
T ss_dssp             ---------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCTTT
T ss_pred             ccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeHHH
Confidence            22111  0  00   00000000000   0000  0 0 00112346899999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHhc-cccEEEEeeeee
Q 010300          236 VLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEIN  314 (513)
Q Consensus       236 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s~-~iP~~~~~~eiD  314 (513)
                      |++|+...... .++.+.. ...       ..+..+  ........++++|++++||.|+++|++|+ ++||||++.+||
T Consensus       163 V~~~~~~~~~~-~~~~~~~-~~~-------~~~~~~--~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evD  231 (428)
T 3dva_I          163 IDAFLAGGAKP-APAAAEE-KAA-------PAAAKP--ATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEAD  231 (428)
T ss_dssp             TTTTSCC-------------------------------------------------------------------------
T ss_pred             HHHHhhccccc-ccccccc-ccc-------cCCCCc--cccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEe
Confidence            99997532111 1100000 000       000000  00011123578999999999999999995 899999999999


Q ss_pred             chHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeeeecCC
Q 010300          315 CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQ  394 (513)
Q Consensus       315 vt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~  394 (513)
                      ||+|+++|+++|+..++.|.|+||++||+||+++||++||+||++|++++++|++|+++||||||++++||++|||++++
T Consensus       232 vt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~  311 (428)
T 3dva_I          232 VTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHAD  311 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCC
Confidence            99999999999876667789999999999999999999999999998754589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCceeeEcE
Q 010300          395 SLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPI  474 (513)
Q Consensus       395 ~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~  474 (513)
                      +++|.+|+++++++.+++|+|+|.++|++||||||||+||+|+++|+||||+||++||++|+++++|++ .+|++++|++
T Consensus       312 ~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~-~~g~i~~r~~  390 (428)
T 3dva_I          312 RKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIV-RDGEIVAAPM  390 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEE-ECCEEEEeee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 5889999999


Q ss_pred             EEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhhcC
Q 010300          475 MTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM  512 (513)
Q Consensus       475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~  512 (513)
                      |+|||+||||+|||+|+++||++|+++||||+.|||++
T Consensus       391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~  428 (428)
T 3dva_I          391 LALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLMEA  428 (428)
T ss_dssp             --------------------------------------
T ss_pred             EEEEEEecccccchHHHHHHHHHHHHHHhCHHHHhhcC
Confidence            99999999999999999999999999999999999875
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Back     alignment and structure
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0 Back     alignment and structure
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Back     alignment and structure
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Back     alignment and structure
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Back     alignment and structure
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Back     alignment and structure
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Back     alignment and structure
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Back     alignment and structure
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Back     alignment and structure
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Back     alignment and structure
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Back     alignment and structure
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Back     alignment and structure
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Back     alignment and structure
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus} Back     alignment and structure
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus} Back     alignment and structure
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Back     alignment and structure
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Back     alignment and structure
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Back     alignment and structure
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A Back     alignment and structure
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Back     alignment and structure
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Back     alignment and structure
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Back     alignment and structure
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Back     alignment and structure
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Back     alignment and structure
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 Back     alignment and structure
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* Back     alignment and structure
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E* Back     alignment and structure
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B Back     alignment and structure
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli} Back     alignment and structure
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans} Back     alignment and structure
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Back     alignment and structure
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A Back     alignment and structure
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} Back     alignment and structure
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A Back     alignment and structure
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} Back     alignment and structure
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A Back     alignment and structure
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP} Back     alignment and structure
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} Back     alignment and structure
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A* Back     alignment and structure
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Back     alignment and structure
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Back     alignment and structure
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Back     alignment and structure
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Back     alignment and structure
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Back     alignment and structure
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 Back     alignment and structure
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A Back     alignment and structure
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima} Back     alignment and structure
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Back     alignment and structure
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli} Back     alignment and structure
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti} Back     alignment and structure
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Back     alignment and structure
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans} Back     alignment and structure
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Back     alignment and structure
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis} Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Back     alignment and structure
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima} Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Back     alignment and structure
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Back     alignment and structure
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A Back     alignment and structure
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Back     alignment and structure
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima} Back     alignment and structure
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli} Back     alignment and structure
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Back     alignment and structure
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1 Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 513
d1scza_233 c.43.1.1 (A:) Dihydrolipoamide succinyltransferase 4e-59
d1b5sa_242 c.43.1.1 (A:) Dihydrolipoamide acetyltransferase { 9e-49
d1dpba_243 c.43.1.1 (A:) Dihydrolipoamide acetyltransferase { 1e-41
d3claa_213 c.43.1.1 (A:) Chloramphenicol acetyltransferase, C 4e-41
d1q23a_214 c.43.1.1 (A:) Chloramphenicol acetyltransferase, C 2e-38
d1pmra_80 b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate 9e-18
d1k8ma_87 b.84.1.1 (A:) Lipoyl domain of the mitochondrial b 2e-17
d1ghja_79 b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate 3e-17
d1laba_80 b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac 7e-17
d1y8ob1102 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa 2e-15
d1gjxa_81 b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac 2e-14
d1iyua_79 b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac 8e-14
d1qjoa_80 b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac 7e-13
d1w85i_42 a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl 4e-11
d1dcza_77 b.84.1.1 (A:) Biotin carboxyl carrier domain of tr 3e-10
d2cyua139 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoa 1e-09
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  193 bits (491), Expect = 4e-59
 Identities = 60/233 (25%), Positives = 118/233 (50%), Gaps = 5/233 (2%)

Query: 282 DKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKL-KASFQNNNSDPNIKHTFL 339
           +K VP+   ++ + + +  A           E+N   ++ L K   +       I+  F+
Sbjct: 4   EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFM 63

Query: 340 PSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSIL 399
              +K++  A+ +YP +N+  + +  +V+     ++ +A++T  GL  P +++V +L + 
Sbjct: 64  SFYVKAVVEALKRYPEVNASIDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMA 121

Query: 400 EITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEK 459
           +I K++  L    +D +L   D +GG  T++N G  G     P++N P+ AI+ M  I+ 
Sbjct: 122 DIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKD 181

Query: 460 VPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 512
            P  + +G V   P+M + +  DHR++DG     F    K+L+E+P  LLL +
Sbjct: 182 RPM-AVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242 Back     information, alignment and structure
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243 Back     information, alignment and structure
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213 Back     information, alignment and structure
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80 Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79 Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80 Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81 Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79 Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80 Back     information, alignment and structure
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 42 Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77 Back     information, alignment and structure
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 39 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query513
d1scza_233 Dihydrolipoamide succinyltransferase {Escherichia 100.0
d1dpba_243 Dihydrolipoamide acetyltransferase {Azotobacter vi 100.0
d1b5sa_242 Dihydrolipoamide acetyltransferase {Bacillus stear 100.0
d1q23a_214 Chloramphenicol acetyltransferase, CAT {Escherichi 100.0
d3claa_213 Chloramphenicol acetyltransferase, CAT {Escherichi 100.0
d1y8ob1102 Lipoyl domain of dihydrolipoamide acetyltransferas 99.88
d1k8ma_87 Lipoyl domain of the mitochondrial branched-chain 99.87
d1ghja_79 Lipoyl domain of the 2-oxoglutarate dehydrogenase 99.87
d1laba_80 Lipoyl domain of dihydrolipoamide acetyltransferas 99.84
d1pmra_80 Lipoyl domain of the 2-oxoglutarate dehydrogenase 99.83
d1gjxa_81 Lipoyl domain of dihydrolipoamide acetyltransferas 99.8
d1qjoa_80 Lipoyl domain of dihydrolipoamide acetyltransferas 99.79
d1iyua_79 Lipoyl domain of dihydrolipoamide acetyltransferas 99.77
d1dcza_77 Biotin carboxyl carrier domain of transcarboxylase 99.57
d1w85i_42 E3/E1 binding domain of dihydrolipoyl acetyltransf 99.52
d2cyua139 E3-binding domain of dihydrolipoamide succinyltran 99.47
d1bdoa_80 Biotinyl domain of acetyl-CoA carboxylase {Escheri 99.4
d1onla_127 Protein H of glycine cleavage system {Thermus ther 96.91
d1hpca_131 Protein H of glycine cleavage system {Pea (Pisum s 96.86
d1vf7a_237 Multidrug resistance protein MexA domain {Pseudomo 96.43
d1dcza_77 Biotin carboxyl carrier domain of transcarboxylase 96.29
d1k8ma_87 Lipoyl domain of the mitochondrial branched-chain 95.23
d1iyua_79 Lipoyl domain of dihydrolipoamide acetyltransferas 94.93
d1bdoa_80 Biotinyl domain of acetyl-CoA carboxylase {Escheri 94.82
d1qjoa_80 Lipoyl domain of dihydrolipoamide acetyltransferas 94.72
d1vf7a_237 Multidrug resistance protein MexA domain {Pseudomo 93.88
d1ghja_79 Lipoyl domain of the 2-oxoglutarate dehydrogenase 93.47
d1gjxa_81 Lipoyl domain of dihydrolipoamide acetyltransferas 91.97
d1laba_80 Lipoyl domain of dihydrolipoamide acetyltransferas 91.1
d1y8ob1102 Lipoyl domain of dihydrolipoamide acetyltransferas 90.84
d1pmra_80 Lipoyl domain of the 2-oxoglutarate dehydrogenase 89.84
d1l5aa1174 VibH {Vibrio cholerae [TaxId: 666]} 87.96
d2gpra_154 Glucose permease IIa domain, IIa-glc {Mycoplasma c 87.71
d2f3ga_150 Glucose-specific factor III (glsIII) {Escherichia 85.39
d1gpra_158 Glucose permease IIa domain, IIa-glc {Bacillus sub 84.75
d2gpra_154 Glucose permease IIa domain, IIa-glc {Mycoplasma c 82.62
d1gpra_158 Glucose permease IIa domain, IIa-glc {Bacillus sub 82.62
d1qpoa2115 Quinolinic acid phosphoribosyltransferase (Nicotin 81.72
d1brwa3103 Pyrimidine nucleoside phosphorylase {Bacillus stea 80.41
d1brwa3103 Pyrimidine nucleoside phosphorylase {Bacillus stea 80.36
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.9e-62  Score=471.94  Aligned_cols=229  Identities=26%  Similarity=0.517  Sum_probs=219.3

Q ss_pred             CCccccCchhHHHHHHHHHHhc-cccEEEEeeeeechHHHHHHHHhcCCCC-CCCCccchHHHHHHHHHHHHhcCcccce
Q 010300          281 DDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNS  358 (513)
Q Consensus       281 ~~~~vp~s~~rr~ia~~m~~s~-~iP~~~~~~eiDvt~l~~~rk~~~~~~~-~~g~klS~~~~likAva~Al~~~P~lN~  358 (513)
                      +++++|++++||.|+++|++|+ ++||||++.+||+|+|+++|+++++..+ +.|.++||++|++||+++||.+||.+|+
T Consensus         3 ~ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na   82 (233)
T d1scza_           3 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNA   82 (233)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTC
T ss_pred             CCcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhhe
Confidence            4678999999999999999995 8999999999999999999999875442 4588999999999999999999999999


Q ss_pred             EEccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCc
Q 010300          359 CFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGK  438 (513)
Q Consensus       359 ~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~  438 (513)
                      +|+++  ++++++++|||+||++++||++|||++++++++.||+++++++.+++|+|+|+++|++||||||||+|++|+.
T Consensus        83 ~~~~~--~i~~~~~vnIgiAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~  160 (233)
T d1scza_          83 SIDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSL  160 (233)
T ss_dssp             EEETT--EEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCC
T ss_pred             EEcCC--eEEEeccceEEEEEEcCCCeEEeEeeccccCCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCccccce
Confidence            99876  8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhhcC
Q 010300          439 FGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM  512 (513)
Q Consensus       439 ~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~  512 (513)
                      +|+|||||||+|||++|+++++|++. +|+++++++|++||+||||++||+++|+||++|+++||||+.|||||
T Consensus       161 ~~tpii~ppq~aIl~vG~i~~~pv~~-~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~lE~P~~lll~~  233 (233)
T d1scza_         161 MSTPIINPPQSAILGMHAIKDRPMAV-NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV  233 (233)
T ss_dssp             CCCCCCCTTCSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred             eeeeecCCCCceEEecccceeecccc-CCeEEEEEEeEEEEEhhcchhccHHHHHHHHHHHHHHhCHHHHhhCC
Confidence            99999999999999999999999985 78999999999999999999999999999999999999999999987
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]} Back     information, alignment and structure
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]} Back     information, alignment and structure
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure