Citrus Sinensis ID: 010314
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUU9 | 730 | ABC transporter G family | yes | no | 0.998 | 0.701 | 0.851 | 0.0 | |
| Q8RXN0 | 703 | ABC transporter G family | no | no | 0.793 | 0.578 | 0.401 | 2e-83 | |
| Q8RWI9 | 691 | ABC transporter G family | no | no | 0.807 | 0.599 | 0.381 | 2e-79 | |
| Q9C8K2 | 687 | ABC transporter G family | no | no | 0.824 | 0.615 | 0.382 | 2e-78 | |
| Q9C8J8 | 678 | ABC transporter G family | no | no | 0.803 | 0.607 | 0.359 | 5e-66 | |
| P45843 | 666 | Protein scarlet OS=Drosop | yes | no | 0.847 | 0.653 | 0.295 | 4e-42 | |
| Q9H222 | 651 | ATP-binding cassette sub- | yes | no | 0.654 | 0.516 | 0.324 | 1e-39 | |
| Q11180 | 598 | ABC transporter ATP-bindi | yes | no | 0.738 | 0.633 | 0.272 | 7e-39 | |
| P10090 | 687 | Protein white OS=Drosophi | no | no | 0.789 | 0.589 | 0.279 | 9e-39 | |
| Q05360 | 677 | Protein white OS=Lucilia | N/A | no | 0.732 | 0.555 | 0.288 | 2e-38 |
| >sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/520 (85%), Positives = 482/520 (92%), Gaps = 8/520 (1%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSD YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512
GLGHSLSSV TRVAA+FVFVSF SLL IAG+P+L+KEIK+
Sbjct: 481 GLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKI 520
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/416 (40%), Positives = 268/416 (64%), Gaps = 9/416 (2%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
A + W+DLTV + + V++ GYA PG++T +MGP+ SGKST+L A+A RL +
Sbjct: 48 ARLTWQDLTVMVTMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAAN 107
Query: 164 ARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG--FFCQRKNV 221
A + G V +NG K+++ +G+ +V ++ LIG+LTVRE ++YSA ++LP +++ +
Sbjct: 108 AFLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRAL 167
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
VE I M L D A+ +IG + +++G+ GE+RRV IA E++MRP +LF+DEP LDS
Sbjct: 168 VERTIIEMGLQDCADTVIG-NWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSA 226
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
SA + TL+ L+ G T++ +I+Q S+EVF LFDR+ LLS G T++FG+ + F+
Sbjct: 227 SAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQ 286
Query: 342 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCK---SWQDDHGDFSSVNMDTAVAIRTLEAT 398
AGFPCP +++PSDHFLR IN+DFD++ A K + + D + TA AIR L
Sbjct: 287 AGFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDY 346
Query: 399 YQSSADAAAVETMILRLTEKEGPFLKSKG-KASSATRVAVLTWRSLLIMSREWKYYWLRL 457
Y +S + + +++ +G L S G +AS + LT RS + MSR++ YYWLRL
Sbjct: 347 YHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRL 406
Query: 458 ILCMILTLCVGTVFSGLGHSLSSVVTRVA-AIFVFVSFNSLLNIAGVPALMKEIKV 512
++ +++T+C+GT++ +G S S+++ R + A FVF F + ++I G P+ ++++KV
Sbjct: 407 LIYILVTVCIGTIYLNVGTSYSAILARGSCASFVF-GFVTFMSIGGFPSFVEDMKV 461
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Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 166/435 (38%), Positives = 269/435 (61%), Gaps = 21/435 (4%)
Query: 91 LPEGAAVARKIAGASVVWKDLTVTIKGKRRYSD----KVVKSSNGYALPGTMTVIMGPAK 146
LP ++R GA + W+DLTV I +SD ++++ NGYA PG + IMGP+
Sbjct: 13 LPSKLEMSR---GAYLAWEDLTVVIPN---FSDGPTRRLLQRLNGYAEPGRIMAIMGPSG 66
Query: 147 SGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206
SGKSTLL ++AGRL + M G + +NG K+ + YG +V +E L+G+LTVRE + YS
Sbjct: 67 SGKSTLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYS 126
Query: 207 ALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264
A L+LP + + ++VE I + L D ++++IG + + +G+ GER+RV IA E++
Sbjct: 127 AHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIG-NWHARGVSGGERKRVSIALEILT 185
Query: 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
RP +LF+DEP LDS SA ++ L+ +A G T++ +++Q S+EVF LFD + LLS+G
Sbjct: 186 RPQILFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSG 245
Query: 325 NTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSS- 383
+++FGE + ++ F+ +GFPCP ++PSDHFLR IN+DFD + A K Q ++
Sbjct: 246 ESVYFGEAKSAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATS 305
Query: 384 ---VNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAV 437
+N+ T+V L Y+ S A + ++ I L+ EG ++ + K S AT ++
Sbjct: 306 DPLMNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIR-KGSEATWWKQLRT 364
Query: 438 LTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSL 497
LT RS + M R+ YYW R+I +++++ VGT+F +G+S +S++ RV+ F +
Sbjct: 365 LTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTF 424
Query: 498 LNIAGVPALMKEIKV 512
++I G P+ ++E+KV
Sbjct: 425 MSIGGFPSFLEEMKV 439
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 172/450 (38%), Positives = 266/450 (59%), Gaps = 27/450 (6%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKG-----KRRYSDKVVKSSNGY 132
L ++G P PP A + R GA + W+DLTV I RR D + NG+
Sbjct: 3 LESTSNGRRPPPP----AEIGR---GAYLAWEDLTVVIPNFSGGPTRRLLDGL----NGH 51
Query: 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT 192
A PG + IMGP+ SGKSTLL ++AGRL + M G + +NG K+ + YG +V +E
Sbjct: 52 AEPGRIMAIMGPSGSGKSTLLDSLAGRLARNVIMTGNLLLNGKKARLDYGLVAYVTQEDI 111
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
L+G+LTVRE + YSA L+L + + ++VE I + L D A+++IG + + +G+
Sbjct: 112 LMGTLTVRETITYSAHLRLSSDLTKEEVNDIVEGTIIELGLQDCADRVIG-NWHSRGVSG 170
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQSST 309
GER+RV +A E++ RP +LF+DEP LDS SA ++ L+ +A G T++ +I+Q S+
Sbjct: 171 GERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSS 230
Query: 310 EVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIA 369
EVF LFD + LLS+G T++FGE+ ++ F+ AGFPCP ++PSDHFLR IN+DFD + A
Sbjct: 231 EVFALFDDLFLLSSGETVYFGESKFAVEFFAEAGFPCPKKRNPSDHFLRCINSDFDTVTA 290
Query: 370 MCKSWQDDHGDFSS----VNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKS 425
K Q ++ +N+ T+ L Y+ S A + ++ I L EG
Sbjct: 291 TLKGSQRIRETPATSDPLMNLATSEIKARLVENYRRSVYAKSAKSRIRELASIEGHHGME 350
Query: 426 KGKASSAT---RVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVV 482
K S AT ++ LT RS + M R+ YYW R+++ ++++ CVGT+F +GHS +S++
Sbjct: 351 VRKGSEATWFKQLRTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSIL 410
Query: 483 TRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512
RV+ F + ++I G P+ ++E+KV
Sbjct: 411 ARVSCGGFITGFMTFMSIGGFPSFIEEMKV 440
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Involved in the secretion of cuticular wax from epidermal cells to the cuticle. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 158/440 (35%), Positives = 255/440 (57%), Gaps = 28/440 (6%)
Query: 92 PEGAAVARKIAGASVVWKDLTVTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKS 150
PEGA V W+DLTV I + +++ NG P + IMGP+ SGKS
Sbjct: 4 PEGAMY--------VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKS 55
Query: 151 TLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210
TLL A+AGRL + M G+V VNG K + +G+ +V +E L+G+LTVRE + YSA L+
Sbjct: 56 TLLDALAGRLAGNVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLR 115
Query: 211 LPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268
LP + + ++VE I M L + +++ IG + +++G+ GE++R+ IA E++ +P +
Sbjct: 116 LPSKLTREEISDIVEATITDMGLEECSDRTIG-NWHLRGISGGEKKRLSIALEVLTKPSL 174
Query: 269 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328
LF+DEP LDS SA ++ L+ +AS+G T++ +I+Q S EVF LFD + LLS G T++
Sbjct: 175 LFLDEPTSGLDSASAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVY 234
Query: 329 FGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRII-AMCKSWQDDHGDFSSVNMD 387
FGE + + F AGFPCP ++PSDHFLR +N+DFD + A+ +S + + FS +
Sbjct: 235 FGEAESATKFFGEAGFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLH 294
Query: 388 -------------TAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSA-- 432
TA TL ++ S AAA I + G + K + +
Sbjct: 295 ETTNTLDPLDDIPTAEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWW 354
Query: 433 TRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFV 492
++ +LT RS + MSR+ YYW+R+ + ++L++CVG++F +G + ++V++ A
Sbjct: 355 KQLRILTQRSFINMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMA 414
Query: 493 SFNSLLNIAGVPALMKEIKV 512
F + ++I G + ++E+KV
Sbjct: 415 GFMTFMSIGGFQSFIEEMKV 434
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P45843|SCRT_DROME Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 141/477 (29%), Positives = 230/477 (48%), Gaps = 42/477 (8%)
Query: 57 EVRVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTV--T 114
E++V G +I + ++P LSK NS S S PL + + GA++VW+DL V
Sbjct: 21 ELQVMPVGSTIEVPSLDSTPKLSKRNS-SERSLPLRSYSKWSPTEQGATLVWRDLCVYTN 79
Query: 115 IKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174
+ G + +++ +S G PGT+ +MG + SGK+TL+ +A R P + G++ +NG
Sbjct: 80 VGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILING 139
Query: 175 AK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSL 231
+ + G+V ++ +GSLTV E+L + A L+L +R+ ++++ + L
Sbjct: 140 RRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGL 199
Query: 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 291
A IG K L GER+R+ A EL+ P +LF DEP LDS SA ++ TL
Sbjct: 200 LSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLY 259
Query: 292 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQS 351
+LA G T+L TI+Q S+++F F+ + LL++G F G L F+N G+ CP +
Sbjct: 260 ELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYN 319
Query: 352 PSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETM 411
P+D + + TD A +S Q F + + AA M
Sbjct: 320 PADFLIGVLATDPGYEQASQRSAQHLCDQF-------------------AVSSAAKQRDM 360
Query: 412 ILRL---TEKEGPF-----LKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMIL 463
++ L + G F ++S + R V+ R+ L + R+ WLR I + +
Sbjct: 361 LVNLEIHMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAM 420
Query: 464 TLCVGTVFSGLGHSLSSVVTRV-AAIFVFVSFN------SLLNI--AGVPALMKEIK 511
+G F+G V V A+F+ +S N S+LN+ G P M+E +
Sbjct: 421 AFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETR 477
|
Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules. Drosophila melanogaster (taxid: 7227) |
| >sp|Q9H222|ABCG5_HUMAN ATP-binding cassette sub-family G member 5 OS=Homo sapiens GN=ABCG5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/367 (32%), Positives = 196/367 (53%), Gaps = 31/367 (8%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
W D+T +++++ +++K + Y G + I+G + SGK+TLL A++GRL +
Sbjct: 54 WWDIT---SCRQQWTRQILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLGRAGTFL 110
Query: 168 GEVFVNG--AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL----PGFFCQRKNV 221
GEV+VNG + E + +V + TL+ SLTVRE L+Y+ALL + PG F Q+K
Sbjct: 111 GEVYVNGRALRREQFQDCFSYVLQSDTLLSSLTVRETLHYTALLAIRRGNPGSF-QKK-- 167
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
VE + +SLS A++LIG + + G+ GERRRV IA +L+ P V+ DEP LD +
Sbjct: 168 VEAVMAELSLSHVADRLIGNYS-LGGISTGERRRVSIAAQLLQDPKVMLFDEPTTGLDCM 226
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
+A ++V L +LA ++ TI+Q +E+F LFD+I +LS G +F G L F++
Sbjct: 227 TANQIVVLLVELARRNRIVVLTIHQPRSELFQLFDKIAILSFGELIFCGTPAEMLDFFND 286
Query: 342 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQS 401
G+PCP +P D ++ + D +S + + ++T+ ++ +E+ Y+
Sbjct: 287 CGYPCPEHSNPFDFYMDLTSVD-------TQSKERE--------IETSKRVQMIESAYKK 331
Query: 402 SADAAAVETMILRLTE-KEGPFLKSKGKASSA--TRVAVLTWRSLLIMSREWKYYWLRLI 458
SA I R+ K P + K K S +++ VL R + R RL+
Sbjct: 332 SAICHKTLKNIERMKHLKTLPMVPFKTKDSPGVFSKLGVLLRRVTRNLVRNKLAVITRLL 391
Query: 459 LCMILTL 465
+I+ L
Sbjct: 392 QNLIMGL 398
|
Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile. Homo sapiens (taxid: 9606) |
| >sp|Q11180|WHT1_CAEEL ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 112/411 (27%), Positives = 204/411 (49%), Gaps = 32/411 (7%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
KRR + ++ + +G A G + I+G + +GK+TL+ + R + + G + ++G ++
Sbjct: 3 KRRVKE-ILHNVSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGRRA 61
Query: 178 ------EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHA 228
EM FV++ +G++T RE+L + A L++ + +R+ VE +
Sbjct: 62 NKWKIREMS----AFVQQHDMFVGTMTAREHLQFMARLRMGDQYYSDHERQLRVEQVLTQ 117
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288
M L A+ +IG +KGL CGE++R+ A E++ P +LF DEP LD+ A ++
Sbjct: 118 MGLKKCADTVIGIPNQLKGLSCGEKKRLSFASEILTCPKILFCDEPTSGLDAFMAGHVVQ 177
Query: 289 TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPI 348
L+ LA G T++ TI+Q S+ V+ LF+ +CL++ G ++ G + F G+PCP
Sbjct: 178 ALRSLADNGMTVIITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQAVPLFEKCGYPCPA 237
Query: 349 MQSPSDHFLRAINT-DFDRIIAMCKSWQDDHGDFSSVNMDTAV-----AIRTLEATYQSS 402
+P+DH +R + D DR +M K+ F S ++ +V A + A++ +
Sbjct: 238 YYNPADHLIRTLAVIDSDRATSM-KTISKIRQGFLSTDLGQSVLAIGNANKLRAASFVTG 296
Query: 403 ADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMI 462
+D +EK F AS T+ L WRS L + R+ +RL+ +I
Sbjct: 297 SDT----------SEKTKTFFNQDYNASFWTQFLALFWRSWLTVIRDPNLLSVRLLQILI 346
Query: 463 LTLCVGTVFSGLGHSLSSVVTRVAAIFVFV-SFNSLLNIAGVPALMKEIKV 512
G VF + +++++ +F + + N +L VP + E+ +
Sbjct: 347 TAFITGIVFFQTPVTPATIISINGIMFNHIRNMNFMLQFPNVPVITAELPI 397
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 134/479 (27%), Positives = 225/479 (46%), Gaps = 74/479 (15%)
Query: 82 NSGSL--PSPPLPEGAAVARKIAGASVVWKDLTV------TIKGKRRYSDK--------- 124
N G+L PSPP G+ + + W ++ + G R+ ++
Sbjct: 44 NYGTLLPPSPPEDSGSGSGQLAENLTYAWHNMDIFGAVNQPGSGWRQLVNRTRGLFCNER 103
Query: 125 --------VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY--GEVFVNG 174
++K+ G A PG + +MG + +GK+TLL A+A R P ++ G +NG
Sbjct: 104 HIPAPRKHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNG 163
Query: 175 A---KSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV--VEDAIHAM 229
EM +V+++ IGSLT RE+L + A++++P R+ V V+ I +
Sbjct: 164 QPVDAKEM-QARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQEL 222
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
SLS + +IG +KGL GER+R+ A E + P +L DEP LDS +A ++
Sbjct: 223 SLSKCQHTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQV 282
Query: 290 LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIM 349
LKKL+ G T++ TI+Q S+E+F LFD+I L++ G F G + FS G CP
Sbjct: 283 LKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPSEAVDFFSYVGAQCPTN 342
Query: 350 QSPSDHFLRAINT-------DFDRIIAMCKSWQDDHGDFSSV--NMDTAVAIRTLEATYQ 400
+P+D +++ + DRI +C D+ S V +M+ +A + LE +
Sbjct: 343 YNPADFYVQVLAVVPGREIESRDRIAKIC-----DNFAISKVARDMEQLLATKNLEKPLE 397
Query: 401 SSADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILC 460
+ T K F++ + AVL WRS L + +E +RLI
Sbjct: 398 QPENG---------YTYKATWFMQFR---------AVL-WRSWLSVLKEPLLVKVRLIQT 438
Query: 461 MILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNI--------AGVPALMKEIK 511
++ + +G +F G + V+ AIF+F++ + N+ + +P M+E +
Sbjct: 439 TMVAILIGLIFLGQQLTQVGVMNINGAIFLFLTNMTFQNVFATINVFTSELPVFMREAR 497
|
Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. White dimerize with brown for the transport of guanine. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules. Drosophila melanogaster (taxid: 7227) |
| >sp|Q05360|WHITE_LUCCU Protein white OS=Lucilia cuprina GN=W PE=2 SV=2 | Back alignment and function description |
|---|
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/440 (28%), Positives = 202/440 (45%), Gaps = 64/440 (14%)
Query: 108 WKDLTVTIKG---KRRYSDK----VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160
WK L +KG R+ K ++K+ G A PG + +MG + +GK+TLL A+A R
Sbjct: 77 WKQLVNRVKGVFCNERHIPKPRKHLIKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRS 136
Query: 161 -------PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG 213
P S RM V+ + + +V+++ IGSLT RE+L + A +++P
Sbjct: 137 ARGVQISPSSVRMLNGHPVDAKEMQ---ARCAYVQQDDLFIGSLTAREHLIFQATVRMPR 193
Query: 214 FFCQRKNV--VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271
Q++ + V+ I +SL N +IG +KGL GER+R+ A E + P +L
Sbjct: 194 TMTQKQKLQRVDQVIQDLSLIKCQNTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLIC 253
Query: 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
DEP LDS A ++ LKKL+ G T++ TI+Q S+E+F LFD+I L++ G F G
Sbjct: 254 DEPTSGLDSFMAASVVQVLKKLSQRGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGT 313
Query: 332 TLACLQHFSNAGFPCPIMQSPSDHFLRAINT-------DFDRIIAMCKSWQDDHGDFSSV 384
+ + FS G CP +P+D +++ + DRI +C
Sbjct: 314 PVEAVDFFSFIGAQCPTNYNPADFYVQVLAVVPGREIESRDRISKICD------------ 361
Query: 385 NMDTAVAIRTLEATYQSSADAA-----AVETMILRLTEKEGPFLKSKGKASSATRVAVLT 439
N R +E +Q A ET IL KAS T+ +
Sbjct: 362 NFAVGKVSREMEQNFQKIAAKTDGLQKDDETTILY-------------KASWFTQFRAIM 408
Query: 440 WRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLN 499
WRS + +E +RLI ++ + +G +F + V+ AIF+F++ + N
Sbjct: 409 WRSWISTLKEPLLVKVRLIQTTMVAVLIGLIFLNQPMTQVGVMNINGAIFLFLTNMTFQN 468
Query: 500 IAGV--------PALMKEIK 511
+ V P M+E +
Sbjct: 469 VFAVINVFTSELPVFMRETR 488
|
May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Lucilia cuprina (taxid: 7375) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | ||||||
| 255565401 | 722 | ATP-binding cassette transporter, putati | 0.996 | 0.707 | 0.917 | 0.0 | |
| 225436522 | 722 | PREDICTED: ABC transporter G family memb | 0.996 | 0.707 | 0.908 | 0.0 | |
| 356550154 | 724 | PREDICTED: ABC transporter G family memb | 0.998 | 0.707 | 0.902 | 0.0 | |
| 449459100 | 721 | PREDICTED: ABC transporter G family memb | 0.998 | 0.710 | 0.894 | 0.0 | |
| 449501234 | 721 | PREDICTED: ABC transporter G family memb | 0.998 | 0.710 | 0.894 | 0.0 | |
| 356543496 | 724 | PREDICTED: ABC transporter G family memb | 0.998 | 0.707 | 0.896 | 0.0 | |
| 358348033 | 725 | White-brown-complex ABC transporter fami | 0.998 | 0.706 | 0.884 | 0.0 | |
| 30683745 | 730 | ABC-2 type transporter-like protein [Ara | 0.998 | 0.701 | 0.851 | 0.0 | |
| 297826143 | 730 | abc transporter family protein [Arabidop | 0.998 | 0.701 | 0.85 | 0.0 | |
| 4063751 | 705 | putative ABC transporter [Arabidopsis th | 0.937 | 0.682 | 0.858 | 0.0 |
| >gi|255565401|ref|XP_002523691.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223536995|gb|EEF38631.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/512 (91%), Positives = 496/512 (96%), Gaps = 1/512 (0%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTD++VR+
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDIDVRM 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSIN A TPASPSLSKLNSGSLPSPPLP+ VARKIAGASVVWKDLTVTIKGKR+
Sbjct: 61 EEGGDSINLAVTPASPSLSKLNSGSLPSPPLPDSTVVARKIAGASVVWKDLTVTIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSS+GYALPGTMTVIMGPAKSGKSTLLRAIAGRL HSA+MYGEVFVNGAKS +P
Sbjct: 121 YSDKVVKSSSGYALPGTMTVIMGPAKSGKSTLLRAIAGRLHHSAKMYGEVFVNGAKSRLP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYGFVERETTLIGSLTV+EYLYYSALLQLPGFFC++K+VVEDAIHAMSL+DYANKLIG
Sbjct: 181 YGSYGFVERETTLIGSLTVQEYLYYSALLQLPGFFCKKKSVVEDAIHAMSLTDYANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGL GERRRV +ARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 241 GHCYMKGLRNGERRRVSMARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+FTI QSSTEVFGLFDRICLLSNGNTLFFGETL+CLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 301 IFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLSCLQHFSNAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD GDFSSVNMDTAVAIRTLEATY+SSADAAAVETM LRLTEKEG
Sbjct: 361 NTDFDRIIAMCKNWQDD-GDFSSVNMDTAVAIRTLEATYKSSADAAAVETMTLRLTEKEG 419
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P+LKSKGKASSATR+AVLTWRSLLIMSREWKYYWLRLILCM+LTLC+GTVFSGLGHSLSS
Sbjct: 420 PYLKSKGKASSATRIAVLTWRSLLIMSREWKYYWLRLILCMLLTLCIGTVFSGLGHSLSS 479
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512
VVTRVAAIFVFVSF SL+ IAGVP+L KEIK+
Sbjct: 480 VVTRVAAIFVFVSFTSLIGIAGVPSLQKEIKI 511
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436522|ref|XP_002273792.1| PREDICTED: ABC transporter G family member 3 [Vitis vinifera] gi|297734935|emb|CBI17169.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/512 (90%), Positives = 493/512 (96%), Gaps = 1/512 (0%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTD++VRV
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDIDVRV 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSI+ AT PASPSLSKLNSGSLPSPPLPE A ARKIAGAS+VWKDLTVTIKGKR+
Sbjct: 61 EEGGDSIHIAT-PASPSLSKLNSGSLPSPPLPESAIFARKIAGASIVWKDLTVTIKGKRK 119
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSSNGY LPGTMTVIMGPAKSGKSTLLRA+AGRL +SA+MYGEVFVNG K +P
Sbjct: 120 YSDKVVKSSNGYTLPGTMTVIMGPAKSGKSTLLRALAGRLHNSAKMYGEVFVNGTKRHLP 179
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYGFVERETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+VVED+IHAMSL DYANKLIG
Sbjct: 180 YGSYGFVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDSIHAMSLGDYANKLIG 239
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 240 GHCYMKGLPSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 299
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 300 IFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 359
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDDHGDFSSVNMDTAVAIRTLEATY+SS DAAAVE+MI++LT+KEG
Sbjct: 360 NTDFDRIIAMCKNWQDDHGDFSSVNMDTAVAIRTLEATYKSSVDAAAVESMIIKLTDKEG 419
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKASSATR+AVLTWRSLLIMSREWKY+WLRL+LCM+ TLCVGTVFSGLGHSLSS
Sbjct: 420 PLLKSKGKASSATRIAVLTWRSLLIMSREWKYFWLRLVLCMLFTLCVGTVFSGLGHSLSS 479
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512
VVTRVAAIFVFVSF SLL+IAGVPA +KEIK+
Sbjct: 480 VVTRVAAIFVFVSFTSLLSIAGVPAHLKEIKI 511
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550154|ref|XP_003543454.1| PREDICTED: ABC transporter G family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/512 (90%), Positives = 490/512 (95%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTD++VRV
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDIDVRV 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSIN ATTPASPSLSKLNSGSLPSP LPEGA + RKIAGASV WKDLT+TIKGKR+
Sbjct: 61 EEGGDSINVATTPASPSLSKLNSGSLPSPRLPEGAVIPRKIAGASVAWKDLTITIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKV+KSS GYALPGTMTVIMGPAKSGKSTLLRAIAGRL SARMYGEVFVNGAKS+MP
Sbjct: 121 YSDKVIKSSTGYALPGTMTVIMGPAKSGKSTLLRAIAGRLHPSARMYGEVFVNGAKSQMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYG+VERETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+VVEDAIHAMSL D+ANKLIG
Sbjct: 181 YGSYGYVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERR V IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLK+LASTG TL
Sbjct: 241 GHCYMKGLPSGERRLVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKRLASTGYTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+ TI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 301 IVTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD+GDFSSVNMDTAVAIRTLEATY+SSADAAAVETMIL+LTEKEG
Sbjct: 361 NTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAAAVETMILKLTEKEG 420
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKAS+ATR+AVLTWRSLL++SREW YYWL L L M+LTLC+GTVFSGLGHSLSS
Sbjct: 421 PVLKSKGKASNATRIAVLTWRSLLVVSREWNYYWLHLTLYMLLTLCIGTVFSGLGHSLSS 480
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512
VVTRVAAIFVFVSF SLL+IA VPAL+KEIK+
Sbjct: 481 VVTRVAAIFVFVSFCSLLSIARVPALLKEIKI 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459100|ref|XP_004147284.1| PREDICTED: ABC transporter G family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/512 (89%), Positives = 492/512 (96%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSP SRVPSSNFFYLRKPGSLRQPISFEDSP+WE+TD++VR+
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPVSRVPSSNFFYLRKPGSLRQPISFEDSPDWEETDIDVRI 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSINAATTPASPSLSKLNS SLPSPPLPEGA V RKI+GA + WKDLTVTIKGKR+
Sbjct: 61 EEGGDSINAATTPASPSLSKLNSCSLPSPPLPEGAGVGRKISGAYIAWKDLTVTIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA+AGRL SA+MYGE+FVNG KS MP
Sbjct: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRALAGRLHRSAKMYGELFVNGTKSRMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYGFVE+ETTLIGSLTVRE+L+YSALLQLPGFF Q+KNVVEDAIHAMSLSDYANKLIG
Sbjct: 181 YGSYGFVEKETTLIGSLTVREFLFYSALLQLPGFFFQKKNVVEDAIHAMSLSDYANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERRRV IARELVMRP +LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 241 GHCYMKGLPNGERRRVSIARELVMRPQILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+FTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF+NAGFPCPIMQSPSDHFLRAI
Sbjct: 301 VFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFANAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD G+FSSVNMDTAVAIRTLEATY+SSADAAAVETMILRLT+KEG
Sbjct: 361 NTDFDRIIAMCKNWQDDQGEFSSVNMDTAVAIRTLEATYKSSADAAAVETMILRLTDKEG 420
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKAS+ TR+AVLTWRSLL+MSREWKYYWLRLIL M+L +C+GTVFSGLGHSLSS
Sbjct: 421 PSLKSKGKASNLTRIAVLTWRSLLVMSREWKYYWLRLILYMLLAVCIGTVFSGLGHSLSS 480
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512
VVTRVAA+FVFVSF SLL++AGVPALM+E+K+
Sbjct: 481 VVTRVAAVFVFVSFTSLLSVAGVPALMREVKI 512
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501234|ref|XP_004161314.1| PREDICTED: ABC transporter G family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/512 (89%), Positives = 492/512 (96%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSP SRVPSSNFFYLRKPGSLRQPISFEDSP+WE+TD++VR+
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPVSRVPSSNFFYLRKPGSLRQPISFEDSPDWEETDIDVRI 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSINAATTPASPSLSKLNS SLPSPPLPEGA V RKI+GA + WKDLTVTIKGKR+
Sbjct: 61 EEGGDSINAATTPASPSLSKLNSCSLPSPPLPEGAGVGRKISGAYIAWKDLTVTIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA+AGRL SA+MYGE+FVNG KS MP
Sbjct: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRALAGRLHRSAKMYGELFVNGTKSRMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYGFVE+ETTLIGSLTVRE+L+YSALLQLPGFF Q+KNVVEDAIHAMSLSDYANKLIG
Sbjct: 181 YGSYGFVEKETTLIGSLTVREFLFYSALLQLPGFFFQKKNVVEDAIHAMSLSDYANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERRRV IARELVMRP +LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 241 GHCYMKGLPNGERRRVSIARELVMRPQILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+FTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF+NAGFPCPIMQSPSDHFLRAI
Sbjct: 301 VFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFANAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD G+FSSVNMDTAVAIRTLEATY+SSADAAAVETMILRLT+KEG
Sbjct: 361 NTDFDRIIAMCKNWQDDQGEFSSVNMDTAVAIRTLEATYKSSADAAAVETMILRLTDKEG 420
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKAS+ TR+AVLTWRSLL+MSREWKYYWLRLIL M+L +C+GTVFSGLGHSLSS
Sbjct: 421 PSLKSKGKASNLTRIAVLTWRSLLVMSREWKYYWLRLILYMLLAVCIGTVFSGLGHSLSS 480
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512
VVTRVAA+FVFVSF SLL++AGVPALM+E+K+
Sbjct: 481 VVTRVAAVFVFVSFTSLLSVAGVPALMREVKI 512
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543496|ref|XP_003540196.1| PREDICTED: ABC transporter G family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/512 (89%), Positives = 487/512 (95%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLR PISFEDSPEWEDTD++ RV
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRHPISFEDSPEWEDTDIDARV 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSIN ATTPASPSLSKLNSGSLPSP LPEGA + RKIAGASV WKDLT+TIKGKR+
Sbjct: 61 EEGGDSINVATTPASPSLSKLNSGSLPSPHLPEGAVIPRKIAGASVAWKDLTITIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKV+KSS GYA+PGTMTVIMGPAKSGKSTLLRAIAGRL SARMYGEVFVNGAKS+MP
Sbjct: 121 YSDKVIKSSTGYAIPGTMTVIMGPAKSGKSTLLRAIAGRLHPSARMYGEVFVNGAKSQMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYG+VERETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+VVEDAIHAMSL D+ANKLIG
Sbjct: 181 YGSYGYVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERR V IARELVMRP +LFIDEPLYHLDSVSALLMMVTLK+LASTG TL
Sbjct: 241 GHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLDSVSALLMMVTLKRLASTGYTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+ TI QSSTEVFGLFD ICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 301 IVTIYQSSTEVFGLFDHICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD+GDFSSVNMDTAVAIRTLEATY+SSADAAAVETMIL+LTEKEG
Sbjct: 361 NTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAAAVETMILKLTEKEG 420
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKAS+ATR+AV TWRSLL++SREWKYYWL LIL M+LTLC+GTVFSGLGHSLSS
Sbjct: 421 PVLKSKGKASNATRIAVSTWRSLLVVSREWKYYWLHLILYMLLTLCIGTVFSGLGHSLSS 480
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512
VVTRVAAIFVFVSF SLL+IA VPALMKEIK+
Sbjct: 481 VVTRVAAIFVFVSFCSLLSIARVPALMKEIKI 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348033|ref|XP_003638054.1| White-brown-complex ABC transporter family [Medicago truncatula] gi|355503989|gb|AES85192.1| White-brown-complex ABC transporter family [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/513 (88%), Positives = 488/513 (95%), Gaps = 1/513 (0%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEW+DT D++VR
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWDDTTDIDVR 60
Query: 60 VEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKR 119
+EGGDSINAATTPASPSLSKLNSGSLPSP +P+GA + RKIAGASV WKDLTVTIKGKR
Sbjct: 61 ADEGGDSINAATTPASPSLSKLNSGSLPSPHIPDGAVIPRKIAGASVAWKDLTVTIKGKR 120
Query: 120 RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179
+YSDKV+KSS GYALPGT+TVIMGPAKSGKSTLLRAIAGRL SARMYGEVFVNGAKS+M
Sbjct: 121 KYSDKVIKSSTGYALPGTLTVIMGPAKSGKSTLLRAIAGRLHPSARMYGEVFVNGAKSQM 180
Query: 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLI 239
PYGSYG+V+RETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+VVEDAIHAMSL D+ANKLI
Sbjct: 181 PYGSYGYVDRETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLI 240
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
GGHCYMKGLP GERR V IARELVMRP +LF+DEPLYHLDSVSALLMMVTL++LASTGCT
Sbjct: 241 GGHCYMKGLPSGERRLVSIARELVMRPRILFLDEPLYHLDSVSALLMMVTLRRLASTGCT 300
Query: 300 LLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA 359
L+ TI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA
Sbjct: 301 LIITIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA 360
Query: 360 INTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE 419
INTDFDRIIAMCK+WQDD+GDFSSVNMDTAVAIRTLEATY+SSADAA+VETMIL+LTEKE
Sbjct: 361 INTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAASVETMILKLTEKE 420
Query: 420 GPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLS 479
GP LKSKGKAS+ATRVAVLTWRSLL++SREWKYYWL L+L M+LTLC+GTVFSGLGHSL
Sbjct: 421 GPALKSKGKASNATRVAVLTWRSLLVVSREWKYYWLHLVLYMLLTLCIGTVFSGLGHSLY 480
Query: 480 SVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512
SV RVAAIF FVSF SLL+IA VPALMKEIKV
Sbjct: 481 SVSARVAAIFAFVSFCSLLSIARVPALMKEIKV 513
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30683745|ref|NP_850111.1| ABC-2 type transporter-like protein [Arabidopsis thaliana] gi|334302769|sp|Q9ZUU9.2|AB3G_ARATH RecName: Full=ABC transporter G family member 3; Short=ABC transporter ABCG.3; Short=AtABCG3; AltName: Full=White-brown complex homolog protein 3; Short=AtWBC3 gi|330252981|gb|AEC08075.1| ABC-2 type transporter-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/520 (85%), Positives = 482/520 (92%), Gaps = 8/520 (1%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSD YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512
GLGHSLSSV TRVAA+FVFVSF SLL IAG+P+L+KEIK+
Sbjct: 481 GLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKI 520
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826143|ref|XP_002880954.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297326793|gb|EFH57213.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/520 (85%), Positives = 482/520 (92%), Gaps = 8/520 (1%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQ D YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT +V++R
Sbjct: 1 MEEIQSQPDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPNVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEVGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGAGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VETMI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVETMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
L+LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 LKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512
GLGHSLSSV TRV+A+FVFVSF SLL IAG+P+L+KEIK+
Sbjct: 481 GLGHSLSSVATRVSAVFVFVSFASLLGIAGIPSLLKEIKI 520
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4063751|gb|AAC98459.1| putative ABC transporter [Arabidopsis thaliana] gi|20197954|gb|AAM15328.1| putative ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/489 (85%), Positives = 454/489 (92%), Gaps = 8/489 (1%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSD YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSV 481
GLGHSLSSV
Sbjct: 481 GLGHSLSSV 489
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | ||||||
| TAIR|locus:2046203 | 730 | ABCG3 "ATP-binding cassette G3 | 0.998 | 0.701 | 0.782 | 6.1e-213 | |
| TAIR|locus:2030898 | 703 | ABCG11 "ATP-binding cassette G | 0.793 | 0.578 | 0.401 | 1e-77 | |
| TAIR|locus:2092960 | 691 | ABCG15 "ATP-binding cassette G | 0.789 | 0.586 | 0.387 | 1.1e-73 | |
| TAIR|locus:2033899 | 687 | ABCG12 "ATP-binding cassette G | 0.797 | 0.595 | 0.384 | 3.2e-72 | |
| TAIR|locus:2033939 | 678 | ABCG13 "ATP-binding cassette G | 0.789 | 0.597 | 0.372 | 4e-67 | |
| UNIPROTKB|E1C5B1 | 665 | ABCG2 "Uncharacterized protein | 0.754 | 0.581 | 0.295 | 6.5e-44 | |
| UNIPROTKB|E1BXG6 | 667 | ABCG2 "Uncharacterized protein | 0.756 | 0.581 | 0.299 | 9e-44 | |
| CGD|CAL0002254 | 579 | orf19.3120 [Candida albicans ( | 0.543 | 0.481 | 0.33 | 3.7e-42 | |
| UNIPROTKB|Q5A0X6 | 579 | CaO19.10632 "Putative uncharac | 0.543 | 0.481 | 0.33 | 3.7e-42 | |
| DICTYBASE|DDB_G0269214 | 793 | abcG1 "ABC transporter G famil | 0.512 | 0.331 | 0.357 | 4.2e-41 |
| TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2058 (729.5 bits), Expect = 6.1e-213, P = 6.1e-213
Identities = 407/520 (78%), Positives = 442/520 (85%)
Query: 1 MEEIXXXXXXXXXXXXXXXXXXXXXXXXXFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEI FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPAXXXXXXXXXXXXXXXXXXEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP EG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512
GLGHSLSSV TRVAA+FVFVSF SLL IAG+P+L+KEIK+
Sbjct: 481 GLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKI 520
|
|
| TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 167/416 (40%), Positives = 267/416 (64%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
A + W+DLTV + + V++ GYA PG++T +MGP+ SGKST+L A+A RL +
Sbjct: 48 ARLTWQDLTVMVTMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAAN 107
Query: 164 ARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNV 221
A + G V +NG K+++ +G+ +V ++ LIG+LTVRE ++YSA ++LP +++ +
Sbjct: 108 AFLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRAL 167
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
VE I M L D A+ +IG + +++G+ GE+RRV IA E++MRP +LF+DEP LDS
Sbjct: 168 VERTIIEMGLQDCADTVIG-NWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSA 226
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
SA + TL+ L+ G T++ +I+Q S+EVF LFDR+ LLS G T++FG+ + F+
Sbjct: 227 SAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQ 286
Query: 342 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQD---DHGDFSSVNMDTAVAIRTLEAT 398
AGFPCP +++PSDHFLR IN+DFD++ A K + D + TA AIR L
Sbjct: 287 AGFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDY 346
Query: 399 YQSSADAAAVETMILRLTEKEGPFLKSKG-KASSATRVAVLTWRSLLIMSREWKYYWLRL 457
Y +S + + +++ +G L S G +AS + LT RS + MSR++ YYWLRL
Sbjct: 347 YHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRL 406
Query: 458 ILCMILTLCVGTVFSGLGHSLSSVVTRVA-AIFVFVSFNSLLNIAGVPALMKEIKV 512
++ +++T+C+GT++ +G S S+++ R + A FVF F + ++I G P+ ++++KV
Sbjct: 407 LIYILVTVCIGTIYLNVGTSYSAILARGSCASFVF-GFVTFMSIGGFPSFVEDMKV 461
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| TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 164/423 (38%), Positives = 264/423 (62%)
Query: 103 GASVVWKDLTVTIKGKRRYSD----KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
GA + W+DLTV I +SD ++++ NGYA PG + IMGP+ SGKSTLL ++AG
Sbjct: 22 GAYLAWEDLTVVIPN---FSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLDSLAG 78
Query: 159 RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
RL + M G + +NG K+ + YG +V +E L+G+LTVRE + YSA L+LP +
Sbjct: 79 RLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMSKE 138
Query: 219 K--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276
+ ++VE I + L D ++++IG + + +G+ GER+RV IA E++ RP +LF+DEP
Sbjct: 139 EVSDIVEGTIMELGLQDCSDRVIG-NWHARGVSGGERKRVSIALEILTRPQILFLDEPTS 197
Query: 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336
LDS SA ++ L+ +A G T++ +++Q S+EVF LFD + LLS+G +++FGE + +
Sbjct: 198 GLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAKSAV 257
Query: 337 QHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQD-DHGDFSS---VNMDTAVAI 392
+ F+ +GFPCP ++PSDHFLR IN+DFD + A K Q +S +N+ T+V
Sbjct: 258 EFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATSDPLMNLATSVIK 317
Query: 393 RTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAVLTWRSLLIMSRE 449
L Y+ S A + ++ I L+ EG ++ + K S AT ++ LT RS + M R+
Sbjct: 318 ARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIR-KGSEATWWKQLRTLTARSFINMCRD 376
Query: 450 WKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKE 509
YYW R+I +++++ VGT+F +G+S +S++ RV+ F + ++I G P+ ++E
Sbjct: 377 VGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFLEE 436
Query: 510 IKV 512
+KV
Sbjct: 437 MKV 439
|
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| TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 162/421 (38%), Positives = 256/421 (60%)
Query: 103 GASVVWKDLTVTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
GA + W+DLTV I + +++ NG+A PG + IMGP+ SGKSTLL ++AGRL
Sbjct: 21 GAYLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLA 80
Query: 162 HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK-- 219
+ M G + +NG K+ + YG +V +E L+G+LTVRE + YSA L+L + +
Sbjct: 81 RNVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVN 140
Query: 220 NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
++VE I + L D A+++IG + + +G+ GER+RV +A E++ RP +LF+DEP LD
Sbjct: 141 DIVEGTIIELGLQDCADRVIG-NWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLD 199
Query: 280 SVSALLMMVTLKKLASTGC-TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
S SA ++ L+ +A G T++ +I+Q S+EVF LFD + LLS+G T++FGE+ ++
Sbjct: 200 SASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVEF 259
Query: 339 FSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSS----VNMDTAVAIRT 394
F+ AGFPCP ++PSDHFLR IN+DFD + A K Q ++ +N+ T+
Sbjct: 260 FAEAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIRETPATSDPLMNLATSEIKAR 319
Query: 395 LEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAVLTWRSLLIMSREWK 451
L Y+ S A + ++ I L EG K S AT ++ LT RS + M R+
Sbjct: 320 LVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIG 379
Query: 452 YYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIK 511
YYW R+++ ++++ CVGT+F +GHS +S++ RV+ F + ++I G P+ ++E+K
Sbjct: 380 YYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMK 439
Query: 512 V 512
V
Sbjct: 440 V 440
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| TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 159/427 (37%), Positives = 254/427 (59%)
Query: 106 VVWKDLTVTIKGKRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
V W+DLTV I + K ++ NG P + IMGP+ SGKSTLL A+AGRL +
Sbjct: 10 VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGNV 69
Query: 165 RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK--NVV 222
M G+V VNG K + +G+ +V +E L+G+LTVRE + YSA L+LP + + ++V
Sbjct: 70 VMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIV 129
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
E I M L + +++ IG + +++G+ GE++R+ IA E++ +P +LF+DEP LDS S
Sbjct: 130 EATITDMGLEECSDRTIG-NWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSAS 188
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 342
A ++ L+ +AS+G T++ +I+Q S EVF LFD + LLS G T++FGE + + F A
Sbjct: 189 AFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKFFGEA 248
Query: 343 GFPCPIMQSPSDHFLRAINTDFDRIIA-MCKSWQDDHGDFS------SVN----MD---T 388
GFPCP ++PSDHFLR +N+DFD + A + +S + + FS + N +D T
Sbjct: 249 GFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPLDDIPT 308
Query: 389 AVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAVLTWRSLLI 445
A TL ++ S AAA I + G + K K S ++ +LT RS +
Sbjct: 309 AEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERK-KGSQTNWWKQLRILTQRSFIN 367
Query: 446 MSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPA 505
MSR+ YYW+R+ + ++L++CVG++F +G + ++V++ A F + ++I G +
Sbjct: 368 MSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQS 427
Query: 506 LMKEIKV 512
++E+KV
Sbjct: 428 FIEEMKV 434
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| UNIPROTKB|E1C5B1 ABCG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 443 (161.0 bits), Expect = 6.5e-44, Sum P(2) = 6.5e-44
Identities = 120/406 (29%), Positives = 210/406 (51%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
++ K++ + G PG + I+GP SGKS+LL +A R A + GEV ++G
Sbjct: 58 RKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAAR-KDPAGLSGEVLIDGIPQ 115
Query: 178 EMPYGSY-GFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDY 234
+ G+V ++ ++G++TVRE L++SA L+LP F +++ V I + LS
Sbjct: 116 PPNFKCISGYVVQDDVVMGTMTVRENLHFSAALRLPSSISFQEKEERVTQIIGELGLSKV 175
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
A+ +G ++G+ GER+R I EL+ P VLF+DEP LD+ +A +++ LKKL+
Sbjct: 176 ADAKVGTEL-IRGVSGGERKRTNIGMELITEPPVLFLDEPTTGLDASTANAVLILLKKLS 234
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSD 354
G T++F+I+Q +F LFD + LL+ G L+ G L++FS+ G+ C +P+D
Sbjct: 235 RRGRTIIFSIHQPRYSIFKLFDSLTLLALGKVLYHGPAKQALEYFSSIGYECEPFNNPAD 294
Query: 355 HFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILR 414
FL IN D + A ++DH + + + TL Y +S+ + + + +
Sbjct: 295 FFLDIINGDSTAVAAS----KEDHKPADTGKGKLSSVVDTLHQKYLNSSLYESTKEALGK 350
Query: 415 LTEKEGPFLKSKGKASSATRV----AVLTW---RSLLIMSREWKYYWLRLILCMILTLCV 467
+ ++G K K T L W RSL + R + ++ + +IL L V
Sbjct: 351 VEREQGRKKKVSKKGHEITYANGFFTQLYWVSKRSLKNLIRNPQASIAQIAVTVILALVV 410
Query: 468 GTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLN-IAGVPALMKEIKV 512
G +F G+ S + RV ++F FV+ N + ++ + +++ K+
Sbjct: 411 GAIFFGVKLDESGIQNRVGSLF-FVTTNQCFSSVSAIELFIRDKKL 455
|
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| UNIPROTKB|E1BXG6 ABCG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 442 (160.7 bits), Expect = 9.0e-44, Sum P(2) = 9.0e-44
Identities = 122/407 (29%), Positives = 211/407 (51%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
++ K++ + G PG + I+GP SGKS+LL +A R A + GEV ++G
Sbjct: 58 RKTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAAR-KDPAGLSGEVLIDGIPQ 115
Query: 178 EMPYGSY-GFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDY 234
+ G+V ++ ++G++TVRE L++SA L+LP F +++ V I + LS
Sbjct: 116 PPNFKCISGYVVQDDVVMGTMTVRENLHFSAALRLPSSISFQEKEERVTQIIGELGLSKV 175
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
A+ +G ++G+ GER+R I EL+ P VLF+DEP LD+ +A +++ LKKL+
Sbjct: 176 ADAKVGTEL-IRGVSGGERKRTNIGMELITEPPVLFLDEPTTGLDASTANAVLILLKKLS 234
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSD 354
G T++F+I+Q +F LFD + LL+ G L+ G L++FS+ G+ C +P+D
Sbjct: 235 RRGRTIIFSIHQPRYSIFKLFDSLTLLALGKVLYHGPAKQALEYFSSIGYECEPFNNPAD 294
Query: 355 HFLRAINTDFDRIIAMCKSWQD-DHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMIL 413
FL IN D + A + + D G +SV + TL Y +S+ + + +
Sbjct: 295 FFLDIINGDSTAVAASKEDHKPADTGKGTSVEKSV---VDTLHQKYLNSSLYESTKEALG 351
Query: 414 RLTEKEGPFLKSKGKASSATRV----AVLTW---RSLLIMSREWKYYWLRLILCMILTLC 466
++ ++G K K T L W RSL + R + ++ + +IL L
Sbjct: 352 KVEREQGRKKKVSKKGHEITYANGFFTQLYWVSKRSLKNLIRNPQASIAQIAVTVILALV 411
Query: 467 VGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLN-IAGVPALMKEIKV 512
VG +F G+ S + RV ++F FV+ N + ++ + +++ K+
Sbjct: 412 VGAIFFGVKLDESGIQNRVGSLF-FVTTNQCFSSVSAIELFIRDKKL 457
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| CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 375 (137.1 bits), Expect = 3.7e-42, Sum P(2) = 3.7e-42
Identities = 99/300 (33%), Positives = 162/300 (54%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARM 166
W ++++T++ + D + S + G M IMGP+ GKSTLL +A R P S+ +
Sbjct: 8 WSNISLTLQNGKTILDDIYGSVSA----GEMLAIMGPSGCGKSTLLNVLAYRTSPRSSTL 63
Query: 167 YGEVFVNGAKSEMPYGSY--GFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVE 223
G +F+N ++ + +VE+E +LIGSLTV E + YSA Q G +K +V
Sbjct: 64 EGGIFINNERATLNKIKQLSSYVEQEDSLIGSLTVSETVDYSA--QFAGIDKAHKKELVS 121
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
I ++ L A IG KG+ G++RRV IA +++ P +LF+DEP LDSV++
Sbjct: 122 KTIKSLGLEGQAMSKIGTPI-QKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDSVAS 180
Query: 284 LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 342
++ T+KK+A ++ +I+Q ST F LFD++ LS G T++ G +++F++
Sbjct: 181 REVISTIKKIAKRENMVIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYFNSI 240
Query: 343 GFPCPIMQSPSDHFLRAINTDF--DRIIA--MCKSWQDDHGDFSSVNMDTAVAIRTLEAT 398
G P +P+++ L INTDF D + + W GD V ++ ++ EAT
Sbjct: 241 GHTMPPYINPAEYVLDLINTDFQGDSSVLDDLVSKWNS--GDVHKVGTES---VQLTEAT 295
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| UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 375 (137.1 bits), Expect = 3.7e-42, Sum P(2) = 3.7e-42
Identities = 99/300 (33%), Positives = 162/300 (54%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARM 166
W ++++T++ + D + S + G M IMGP+ GKSTLL +A R P S+ +
Sbjct: 8 WSNISLTLQNGKTILDDIYGSVSA----GEMLAIMGPSGCGKSTLLNVLAYRTSPRSSTL 63
Query: 167 YGEVFVNGAKSEMPYGSY--GFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVE 223
G +F+N ++ + +VE+E +LIGSLTV E + YSA Q G +K +V
Sbjct: 64 EGGIFINNERATLNKIKQLSSYVEQEDSLIGSLTVSETVDYSA--QFAGIDKAHKKELVS 121
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
I ++ L A IG KG+ G++RRV IA +++ P +LF+DEP LDSV++
Sbjct: 122 KTIKSLGLEGQAMSKIGTPI-QKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDSVAS 180
Query: 284 LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 342
++ T+KK+A ++ +I+Q ST F LFD++ LS G T++ G +++F++
Sbjct: 181 REVISTIKKIAKRENMVIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYFNSI 240
Query: 343 GFPCPIMQSPSDHFLRAINTDF--DRIIA--MCKSWQDDHGDFSSVNMDTAVAIRTLEAT 398
G P +P+++ L INTDF D + + W GD V ++ ++ EAT
Sbjct: 241 GHTMPPYINPAEYVLDLINTDFQGDSSVLDDLVSKWNS--GDVHKVGTES---VQLTEAT 295
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| DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 4.2e-41, Sum P(2) = 4.2e-41
Identities = 98/274 (35%), Positives = 163/274 (59%)
Query: 113 VTIKGKRR-YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+T KGK++ S +++ + NG+ GT+ IMGP+ +GK+TLL +A RL + G ++
Sbjct: 125 ITEKGKKKKISKQILTNINGHIESGTIFAIMGPSGAGKTTLLDILAHRLNINGS--GTMY 182
Query: 172 VNGAKSEMPYGSY--GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV--VEDAIH 227
+NG KS+ G+V + +L+ SLTVRE L + A L++P ++ + V+D I
Sbjct: 183 LNGNKSDFNIFKKLCGYVTQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIID 242
Query: 228 AMSLSDYANKLIG-GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
M L+ A+ L+G ++G+ GERRRV I+ EL+ P V+ +DEP LD+ ++ +
Sbjct: 243 EMGLNRCADTLVGTADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYV 302
Query: 287 MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPC 346
M LKKLA +G T++ TI+Q + ++ +FD + LL +GNT+++G+ L++F+ G+ C
Sbjct: 303 MSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLLLGDGNTIYYGKANKALEYFNANGYHC 362
Query: 347 PIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGD 380
+P+D FL INT + S DD+ D
Sbjct: 363 SEKTNPADFFLDLINTQVED---QADSDDDDYND 393
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZUU9 | AB3G_ARATH | No assigned EC number | 0.8519 | 0.9980 | 0.7013 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00022191001 | SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (643 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 513 | |||
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-77 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 5e-66 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-51 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-43 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-39 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-37 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-33 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-32 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-23 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-23 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-22 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 5e-22 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-21 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-21 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-20 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-19 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-19 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-19 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-19 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-18 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 8e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-17 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-17 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-17 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-16 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-16 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-16 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 8e-16 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 8e-16 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-15 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-15 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-15 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-15 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-15 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-15 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 9e-14 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-13 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-13 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-13 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-13 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 6e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-13 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-13 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-13 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 6e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-12 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-12 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-12 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-12 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-11 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-11 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-11 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-11 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-11 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 9e-11 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-10 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-10 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-10 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 8e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-10 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-09 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-09 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-09 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-09 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-09 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-08 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-08 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-08 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 8e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-08 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-07 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-07 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-07 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-07 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-07 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 6e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-07 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 8e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 8e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 9e-07 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-07 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-06 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-06 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-06 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-06 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 5e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-06 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 7e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 8e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 8e-06 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 8e-06 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-06 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-06 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-05 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-05 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-05 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-05 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-05 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 7e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 8e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 9e-05 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 9e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 3e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-04 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 5e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 5e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 7e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 9e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 0.001 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.001 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.001 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.001 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.001 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.001 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.002 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.002 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 0.002 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.002 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.002 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.002 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.002 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 0.002 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.003 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.003 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 0.003 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 0.003 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.003 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 0.003 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.003 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.004 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 0.004 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 3e-77
Identities = 87/231 (37%), Positives = 129/231 (55%), Gaps = 40/231 (17%)
Query: 103 GASVVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
G ++ +++LTVT+K + +++K+ +G A PG +T IMGP+ +GKSTLL A+AGR
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR- 59
Query: 162 HSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
+ GEV +NG + G+V ++ L +LTVRE L ++A L
Sbjct: 60 TGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------- 109
Query: 220 NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+GL GER+RV IA ELV P +LF+DEP LD
Sbjct: 110 --------------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
Query: 280 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
S SAL +M L++LA TG T++ +I+Q S+E+F LFD++ LLS G ++FG
Sbjct: 144 SSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 5e-66
Identities = 117/398 (29%), Positives = 192/398 (48%), Gaps = 31/398 (7%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--- 174
+ R ++K+ +G A PG + +MG + +GK+TL+ A+A R P + G V +NG
Sbjct: 33 RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI 92
Query: 175 AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLS 232
EM S +V+++ I +LTVRE+L + A L++P +++ V++ + A+ L
Sbjct: 93 DAKEMRAIS-AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR 151
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
AN IG +KGL GER+R+ A EL+ P +LF DEP LDS A ++ LK
Sbjct: 152 KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKG 211
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LA G T++ TI+Q S+E+F LFD+I L++ G + G + FS+ G PCP +P
Sbjct: 212 LAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNP 271
Query: 353 SDHFLRAI-------NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADA 405
+D +++ + N +RI +C S+ S + D V
Sbjct: 272 ADFYVQVLAVIPGSENESRERIEKICDSFAV-----SDIGRDMLVNTNLWSGKAGGLVKD 326
Query: 406 AAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTL 465
+ AS T+ L RS L + R+ +RLI M+ +
Sbjct: 327 SENME-------------GIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAI 373
Query: 466 CVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGV 503
+G ++ G G + V A+F+F++ + N+ V
Sbjct: 374 LIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPV 411
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 2e-51
Identities = 83/228 (36%), Positives = 127/228 (55%), Gaps = 12/228 (5%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
W D+ + K +Y+ +++ + + G + I+G + SGK+TLL AI+GR+
Sbjct: 6 WWDVGLKAKNWNKYA-RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTS 64
Query: 168 GEVFVNGAKS---EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVV 222
G++ NG + +V ++ L+ LTVRE L Y+A+L+LP RK V
Sbjct: 65 GQILFNGQPRKPDQFQK-CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV 123
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
ED + L D A IG +KG+ GERRRV IA +L+ P VL +DEP LDS +
Sbjct: 124 ED----VLLRDLALTRIG-GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
AL ++ TL +LA ++ TI+Q +++F LFDRI LLS+G ++ G
Sbjct: 179 ALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 2e-43
Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 44/232 (18%)
Query: 103 GASVVWKDL--TVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160
G+ + WK+L TV +KG +R +++ + +GY PGT+T +MG + +GK+TLL +AGR
Sbjct: 1 GSVLTWKNLNYTVPVKGGKR---QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR- 56
Query: 161 PHSARMYGEVFVNGAKSEMPYGSY-GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
+ + GE+ +NG + + G+VE++ +LTVRE L +SALL
Sbjct: 57 KTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL---------- 106
Query: 220 NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+GL +R+R+ I EL +P +LF+DEP LD
Sbjct: 107 --------------------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140
Query: 280 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-SNGNTLFFG 330
S +A ++ LKKLA +G +L TI+Q S +F FDR+ LL G T++FG
Sbjct: 141 SQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 2e-39
Identities = 88/266 (33%), Positives = 144/266 (54%), Gaps = 10/266 (3%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
++I G D T I+ + ++ G A PG + ++GP+ SGKSTLL A+AG
Sbjct: 62 KRILGHKPKISDETRQIQER-----TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116
Query: 159 RLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ 217
R+ G + N K GFV ++ L LTVRE L + +LL+LP +
Sbjct: 117 RI-QGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK 175
Query: 218 RKN--VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275
++ V E I + L+ N +IG + +++G+ GER+RV IA E+++ P +L +DEP
Sbjct: 176 QEKILVAESVISELGLTKCENTIIG-NSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234
Query: 276 YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335
LD+ +A +++TL LA G T++ +++Q S+ V+ +FD + +LS G LFFG+
Sbjct: 235 SGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA 294
Query: 336 LQHFSNAGFPCPIMQSPSDHFLRAIN 361
+ +F + GF +P+D L N
Sbjct: 295 MAYFESVGFSPSFPMNPADFLLDLAN 320
|
Length = 659 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 3e-39
Identities = 116/410 (28%), Positives = 193/410 (47%), Gaps = 44/410 (10%)
Query: 108 WKDLTVTI---KGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
W++LT + K KR + V +G+ PGT+T +MG + +GK+TLL +A R+
Sbjct: 762 WRNLTYEVKIKKEKRVILNNV----DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV 817
Query: 165 RMYGEVFVNGAKSEMPYG-SYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNV 221
G+ VNG + + S G+V+++ + + TVRE L +SA L+ P ++
Sbjct: 818 ITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEY 877
Query: 222 VEDAIHAMSLSDYANKLIG--GHCYMKGLPCGERRRVRIARELVMRPHVL-FIDEPLYHL 278
VE+ I + + YA+ ++G G +GL +R+R+ I ELV +P +L F+DEP L
Sbjct: 878 VEEVIKLLEMESYADAVVGVPG----EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933
Query: 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG-NTLFFGE------ 331
DS +A + ++KLA G +L TI+Q S +F FDR+ LL G T++FG+
Sbjct: 934 DSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993
Query: 332 TLACLQHFSNAGFP-CPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAV 390
T+ + +F G P CP +P++ L I + N D
Sbjct: 994 TI--INYFEKHGAPKCPEDANPAEWMLEVIGA----------------APGAHANQDYHE 1035
Query: 391 AIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREW 450
R + +E + + + P SK AS + ++ WR+ R
Sbjct: 1036 VWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTP 1095
Query: 451 KYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVF-VSFNSLLN 499
Y + + L + L +G F +G SL + ++ A+F+ V FN L+
Sbjct: 1096 DYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQ 1145
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 1e-37
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 18/243 (7%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165
+ ++LT G + + + PG + ++GP +GK+TLL+ +AG L ++
Sbjct: 5 IEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS- 59
Query: 166 MYGEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV 221
GE+ V G + G+V +E +L LTVRE L + A L + +
Sbjct: 60 --GEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL-SKEEAEER 116
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
+E+ + L D ANK + + L G ++R+ IA L+ P +L +DEP LD
Sbjct: 117 IEELLELFGLEDKANKKV------RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
S + L++LA G + E L DR+ +L++G + G + F
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
Query: 342 AGF 344
G
Sbjct: 231 KGV 233
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 2e-33
Identities = 106/431 (24%), Positives = 168/431 (38%), Gaps = 45/431 (10%)
Query: 106 VVWKDLTVTIKGKRRYSD----KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
+ K LT + +++ D ++K +G PG +TV++G SG STLL+ IA
Sbjct: 53 ALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD 112
Query: 162 HSARMY-GEVFVNG-AKSEMPYGSYGFV----ERETTLIGSLTVREYLYYSALLQLPGFF 215
G + +G E+ G V E + LTV E L ++A + P
Sbjct: 113 GFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF-PHLTVGETLDFAARCKTPQ-- 169
Query: 216 CQRKNVVEDAIHAMSLSDYANKLIG-GHCY--------MKGLPCGERRRVRIARELVMRP 266
R + V +A ++D G H ++G+ GER+RV IA +
Sbjct: 170 -NRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228
Query: 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+ D LDS +AL + LK A+ T L I Q S + + LFD++ +L G
Sbjct: 229 KIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGY 288
Query: 326 TLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVN 385
++FG Q+F GF CP Q+ +D FL ++ + +R I
Sbjct: 289 QIYFGPADKAKQYFEKMGFKCPDRQTTAD-FLTSLTSPAERQI-----KPGYEKKVPRTP 342
Query: 386 MDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVA--------- 436
+ R Q + KE K S TR +
Sbjct: 343 QEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSM 402
Query: 437 ---VLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIF---V 490
R+ L M + + +I+ L + +VF L + S +R A+F +
Sbjct: 403 QVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAIL 462
Query: 491 FVSFNSLLNIA 501
F +F+SLL IA
Sbjct: 463 FNAFSSLLEIA 473
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-32
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 36/230 (15%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165
+ W++++ T GK R ++K +G PG M +++G SG STLL+A+A R +
Sbjct: 4 LSWRNISFT-TGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS 62
Query: 166 MYGEVFVNGAKS----EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV 221
+ G++ NG E G +V E +LTVRE L ++ +
Sbjct: 63 VEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK----------- 111
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
G+ +++G+ GER+RV IA LV R VL D LDS
Sbjct: 112 -------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
Query: 282 SALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+AL ++ ++ +A T ++ Q+S E++ LFD++ +L G +++G
Sbjct: 153 TALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 25/238 (10%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMY 167
++LTV+ + V++ + G +T ++GP +GKSTLL+AI G L P S
Sbjct: 8 ENLTVSYGNRP-----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---- 58
Query: 168 GEVFVNG--AKSEMPYGSYGFVERETTLIGS--LTVREYLY---YSALLQLPGFFCQRKN 220
GE+ + G + G+V +++++ S +TV++ + Y + K
Sbjct: 59 GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V++A+ + + D ++ IG L G+++RV +AR L P +L +DEP +D
Sbjct: 119 KVDEALERVGMEDLRDRQIGE------LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDV 172
Query: 281 VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
+ LK+L G T+L + V FDR+ L N + + G L
Sbjct: 173 AGQKEIYDLLKELRQEGKTVL-MVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE 228
|
Length = 254 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-24
Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 31/232 (13%)
Query: 109 KDLTVTIKGKRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
+DLTV Y V++ + PG I+GP +GKSTLL+AI G L ++
Sbjct: 3 EDLTV------SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS--- 53
Query: 168 GEVFVNGAKSEMPYGSYGFV-ERETTLIGS-LTVREYLYYSALLQLPGFF----CQRKNV 221
G + V G E G+V +R + ++VR+ + L G F K
Sbjct: 54 GSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRD-VVLMGLYGHKGLFRRLSKADKAK 112
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
V++A+ + LS+ A++ IG L G+++RV +AR LV P +L +DEP +D
Sbjct: 113 VDEALERVGLSELADRQIGE------LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166
Query: 282 SALLMMVTLKKLASTGCTLLFT---INQSSTEVFGLFDRICLLSNGNTLFFG 330
+ + L++L G T+L + V FDR+ LL N + G
Sbjct: 167 TQEDIYELLRELRREGMTILVVTHDLGL----VLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 1e-23
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY------GFVE 188
G +T I+GP SGKSTLL+ +AG L + GEV ++G K +V
Sbjct: 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDG-KDIASLSPKELAKKLAYVP 82
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKN---VVEDAIHAMSLSDYANKLIGGHCYM 245
+ + LTV E + L F K +VE+A+ + L A++ +
Sbjct: 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--DE-- 138
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT- 303
L GER+RV IAR L +L +DEP HLD + ++ L+ L G T++
Sbjct: 139 --LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL 196
Query: 304 --INQSSTEVFGLF-DRICLLSNGNTLFFGET 332
+N ++ + D + LL +G + G
Sbjct: 197 HDLNLAA-----RYADHLILLKDGKIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 4e-23
Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 18/194 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G I+GP+ GKSTLLR IAG ++ GEV ++G P G+V +E L+
Sbjct: 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGPGPDIGYVFQEDALL 84
Query: 195 GSLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
LTV + + L L + + ++ + + L+ + +K Y L G
Sbjct: 85 PWLTVLD----NVALGLELRGKSKAEARERAKELLELVGLAGFEDK------YPHQLSGG 134
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTE 310
R+RV IAR L RP +L +DEP LD+++ + L +L T T+L + E
Sbjct: 135 MRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLL-VTHDVDE 193
Query: 311 VFGLFDRICLLSNG 324
L DR+ +LSN
Sbjct: 194 AVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-22
Identities = 87/318 (27%), Positives = 152/318 (47%), Gaps = 43/318 (13%)
Query: 84 GSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMG 143
GS P LP AR IA +++ + I ++ ++K ++G P MT+++G
Sbjct: 146 GSRALPTLPN---AARNIAESALG----MLGINLAKKTKLTILKDASGIIKPSRMTLLLG 198
Query: 144 PAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTVRE 201
P SGK+TLL A+AG+L S ++ GE+ NG + +P + ++ + +G +TV+E
Sbjct: 199 PPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258
Query: 202 YLYYSALLQLPGF-------FCQR----------------KNVVEDAIHAMSLSDYANKL 238
L +SA Q G +R K + + + ++DY K+
Sbjct: 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKI 318
Query: 239 IG---------GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
+G G ++G+ G+++RV +V LF+DE LDS + ++
Sbjct: 319 LGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKC 378
Query: 290 LKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPI 348
L+++ T T+L ++ Q + E F LFD I LLS G ++ G L+ F + GF CP
Sbjct: 379 LQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPE 438
Query: 349 MQSPSDHFLRAINTDFDR 366
+ +D FL+ + + D+
Sbjct: 439 RKGTAD-FLQEVTSKKDQ 455
|
Length = 1470 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 5e-22
Identities = 83/323 (25%), Positives = 145/323 (44%), Gaps = 25/323 (7%)
Query: 32 YLRKPGSLRQPISFEDSPEWEDTDVEVRVEEGGDSINAATTPASPSLSKLNSGSLPSPPL 91
YL G + IS E + E E + + N A +S S
Sbjct: 787 YLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSS 846
Query: 92 PEGAAVARKIAGASVVWKDLTVTIKGKRRYSD---------------KVVKSSNGYALPG 136
E A G + + L ++ + D ++++ G PG
Sbjct: 847 LEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG 906
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETTLI 194
+T +MG + +GK+TL+ +AGR + G++ ++G K E G+ E+
Sbjct: 907 VLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 195 GSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIG--GHCYMKGLPC 250
+TVRE L YSA L+LP ++ V++ + + L + + ++G G + GL
Sbjct: 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG---VTGLST 1022
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
+R+R+ IA ELV P ++F+DEP LD+ +A ++M T++ TG T++ TI+Q S +
Sbjct: 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1082
Query: 311 VFGLFDRICLLSNGNTLFFGETL 333
+F FD + L+ G + + L
Sbjct: 1083 IFEAFDELLLMKRGGQVIYSGPL 1105
|
Length = 1470 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.5 bits (231), Expect = 1e-21
Identities = 60/211 (28%), Positives = 88/211 (41%), Gaps = 47/211 (22%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVER---- 189
G +I+GP SGKSTLLR + G L P S GEV V+G E
Sbjct: 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTS----GEVLVDG----KDLTKLSLKELRRKV 77
Query: 190 -------ETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLI-- 239
+ G TV E + + L LP + + VE+A+ + L ++
Sbjct: 78 GLVFQNPDDQFFGP-TVEEEVAFGLENLGLPEE--EIEERVEEALELVGLEGLRDRSPFT 134
Query: 240 --GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 297
GG +++RV IA L M P +L +DEP LD ++ LKKL + G
Sbjct: 135 LSGG----------QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG 184
Query: 298 CTLLFTINQSST----EVFGLFDRICLLSNG 324
T++ T + L DR+ +L +G
Sbjct: 185 KTIII-----VTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 2e-21
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 17/201 (8%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA--KSEMPY-GSYGFVERET 191
PG ++GP+ GK+TLLR IAG + GE+ ++G P + G V ++
Sbjct: 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERRNIGMVFQDY 81
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
L LTV E + + L + + V + + + L N+ L G
Sbjct: 82 ALFPHLTVAENIAF-GLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE------LSGG 134
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLF-TINQSST 309
+++RV +AR L P +L +DEPL LD+ + LK+L G T ++ T +Q
Sbjct: 135 QQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-- 192
Query: 310 EVFGLFDRICLLSNGNTLFFG 330
E L DRI +++ G + G
Sbjct: 193 EALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 3e-21
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 34/207 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSY-----G 185
G I+GP+ SGKSTLL + G ++ GEV V+G SE ++ G
Sbjct: 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGTDISKLSEKELAAFRRRHIG 85
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFC-----QRKNVVEDAIHAMSLSDYANKLIG 240
FV + L+ LT E + +LP +R+ E+ + + L D N
Sbjct: 86 FVFQSFNLLPDLTALENV------ELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS 139
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCT 299
+ G G+++RV IAR L P ++ DEP +LDS + +M L++L G T
Sbjct: 140 ---ELSG---GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTT 193
Query: 300 LLF-TINQSSTEVFGLFDRICLLSNGN 325
++ T + E+ DRI L +G
Sbjct: 194 IVVVTHDP---ELAEYADRIIELRDGK 217
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 3e-21
Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 12/190 (6%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G ++GP+ GKSTLLR IAG ++ GEV V+G P G+V ++ L+
Sbjct: 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGEPVTGPGPDRGYVFQQDALL 85
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
LTV + + LQ + + E+ + + LS + N Y L G R+
Sbjct: 86 PWLTVLDNVALGLELQGVPK-AEARERAEELLELVGLSGFENA------YPHQLSGGMRQ 138
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFG 313
RV +AR L + P VL +DEP LD+++ + L + TG T+L + E
Sbjct: 139 RVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLL-VTHDIDEAVF 197
Query: 314 LFDRICLLSN 323
L DR+ +LS
Sbjct: 198 LADRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 4e-21
Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 57/213 (26%)
Query: 112 TVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ R + + + G + ++GP SGKSTLLRAIAG L ++ GE+
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEIL 57
Query: 172 VNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL 231
++G ++ + +R + Y + QL G
Sbjct: 58 IDG--------------KDIAKLPLEELRRRIGY--VPQLSG------------------ 83
Query: 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 291
G+R+RV +AR L++ P +L +DEP LD S ++ L+
Sbjct: 84 -------------------GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 292 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
+LA G T++ + DR+ +L +G
Sbjct: 125 ELAEEGRTVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 2e-20
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 21/230 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++LT T K + V + G + ++G +GK+T L+ + G L ++ G
Sbjct: 4 RNLTKTYKKGTKP---AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---G 57
Query: 169 EVFVNGA--KSEMP--YGSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVE 223
++NG +++ S G+ + L LTVRE+L + A L+ LP + K VE
Sbjct: 58 TAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS--EIKEEVE 115
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
+ + L+D ANK + L G +R++ +A L+ P VL +DEP LD S
Sbjct: 116 LLLRVLGLTDKANKRA------RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169
Query: 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333
+ + ++ G +++ T S E L DRI ++S+G G
Sbjct: 170 RAIWDLILEVRK-GRSIILT-THSMDEAEALCDRIAIMSDGKLRCIGSPQ 217
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 8e-20
Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 58/229 (25%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+V G+ V+ + G + I+GP +GKSTLL+ +AG L S+ G
Sbjct: 3 ENLSVGYGGRT-----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---G 54
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
E+ ++G + SL+ +E L + + Q A+
Sbjct: 55 EILLDG-----------------KDLASLSPKE------LARKIAYVPQ-------ALEL 84
Query: 229 MSLSDYANKLIG---GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+ L+ A++ G GER+RV +AR L P +L +DEP HLD +
Sbjct: 85 LGLAHLADRPFNELSG---------GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135
Query: 286 MMVTLKKLA-STGCTLLFT---INQSSTEVFGLFDRICLLSNGNTLFFG 330
++ L++LA G T++ +N DR+ LL +G + G
Sbjct: 136 LLELLRRLARERGKTVVMVLHDLNL----AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 85.5 bits (213), Expect = 2e-19
Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 62/223 (27%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+ K + + G + ++GP +GK+TL++ I G L + G
Sbjct: 4 RNLSKRYGKK-----TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---G 55
Query: 169 EVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED 224
E+ V G + E G++ E +L +LTVRE L S
Sbjct: 56 EIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG----------------- 98
Query: 225 AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
G ++R+ +A+ L+ P +L +DEP LD S
Sbjct: 99 --------------------------GMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132
Query: 285 LMMVTLKKLASTGCTLLFTINQSS---TEVFGLFDRICLLSNG 324
L++L G T+L SS E L DR+ +L+NG
Sbjct: 133 EFWELLRELKKEGKTILL----SSHILEEAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 6e-19
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 27/228 (11%)
Query: 113 VTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ ++ +RY K L M ++GP +GK+TL+R +A P S+ G +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSS---GTIR 57
Query: 172 VNGAK-SEMP---YGSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAI 226
++G + P G++ +E + + TVRE+L Y A L+ +P + K V++ +
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPS--KEVKARVDEVL 115
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
++L D A K IG L G RRRV IA+ LV P +L +DEP LD +
Sbjct: 116 ELVNLGDRAKKKIG------SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169
Query: 287 MVTLKKLASTGCTLLFTINQSST----EVFGLFDRICLLSNGNTLFFG 330
L +L +L ST +V L +++ +L+ G +F G
Sbjct: 170 RNLLSELGEDRIVIL------STHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 7e-19
Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 53/197 (26%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-------SEMPYGSYGFVE 188
G + ++GP+ SGKSTLLR IAG + G + ++G G V
Sbjct: 26 GEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGEDLTDLEDELPPLRRRIGMVF 82
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
++ L LTV E N+ GL
Sbjct: 83 QDFALFPHLTVLE------------------NIAL-----------------------GL 101
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQS 307
G+++RV +AR L M P VL +DEP LD ++ + LK L A G T++ +
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161
Query: 308 STEVFGLFDRICLLSNG 324
E L DR+ +L +G
Sbjct: 162 D-EAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 9e-19
Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 51/244 (20%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G V K + + ++ G + I+GP+ SGKSTLLR I G L
Sbjct: 11 GGRTVLKGVDLDVR------------------RGEILAIIGPSGSGKSTLLRLIVGLLRP 52
Query: 163 SARMYGEVFVNGAK----SEMPYGS----YGFVERETTLIGSLTVRE----YLYYSALLQ 210
+ GEV ++G SE G + + L SLTV E L L
Sbjct: 53 DS---GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLS 109
Query: 211 LPGFFCQRKNVVEDAIHAMSLSDYANK----LIGGHCYMKGLPCGERRRVRIARELVMRP 266
+ + +V + + A+ L + L GG M ++RV +AR L + P
Sbjct: 110 EE----EIREIVLEKLEAVGLRGAEDLYPAELSGG---M-------KKRVALARALALDP 155
Query: 267 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326
+L DEP LD +++ ++ ++ L + F + DRI +L +G
Sbjct: 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI 215
Query: 327 LFFG 330
+ G
Sbjct: 216 VAEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 23/231 (9%)
Query: 112 TVTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE 169
+ +K ++ + V+K N G V++GP+ GKSTLLR IAG ++ GE
Sbjct: 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GE 59
Query: 170 VFVNGAK-SEMP--YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF---CQRKNVVE 223
+ ++G +++P V + L +TV E + + L+L G ++ V+
Sbjct: 60 ILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR--VK 115
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
+ + L N+ L G+R+RV +AR LV +P V +DEPL +LD+
Sbjct: 116 EVAKLLGLEHLLNRKP------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLR 169
Query: 284 LLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333
+LM +KKL G T ++ + E L DRI ++++G G L
Sbjct: 170 VLMRSEIKKLHERLGTTTIY-VTHDQVEAMTLADRIVVMNDGRIQQVGTPL 219
|
Length = 338 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-18
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 27/210 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG--------SYGF 186
G +++GP SGKSTLL+ + G L + GEV V+G + F
Sbjct: 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVF 85
Query: 187 VERETTLIGSLTVREYLYYSAL-LQLPGFFCQR---KNVVEDAIHAMSLSDYANKLIGGH 242
+ L G TV + + + L LP R + V +A+ + L + ++
Sbjct: 86 QNPDDQLFGP-TVEDEVAFGLENLGLP-----REEIEERVAEALELVGLEELLDRPP--- 136
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
L G+++RV IA L M P +L +DEP LD ++ LKKL G +
Sbjct: 137 ---FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTII 193
Query: 303 TINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ V DR+ +L +G L G+
Sbjct: 194 IVTHDLELVLEYADRVVVLDDGKILADGDP 223
|
Length = 235 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 2e-18
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 32/227 (14%)
Query: 119 RRYSD-----KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173
+R+ D + V + PG +T ++GP +GK+T LR +AG L A G V+
Sbjct: 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVD 65
Query: 174 G---------AKSEMPYGSYGFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVE 223
G A+ + GFV T L LT RE L Y++ L L G + +E
Sbjct: 66 GFDVVKEPAEARRRL-----GFVSDSTGLYDRLTARENLEYFAGLYGLKG--DELTARLE 118
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
+ + + + ++ +GG G R++V IAR LV P VL +DEP LD ++
Sbjct: 119 ELADRLGMEELLDRRVGG------FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMAT 172
Query: 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+ +++L + G +LF+ + EV L DR+ +L G ++ G
Sbjct: 173 RALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 5e-18
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 26/192 (13%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYG 182
+V+K N A G + ++G +GKSTLL + G L P S G V ++G + Y
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS----GAVLIDGE--PLDYS 59
Query: 183 SYGFVERETTL----------IGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSL 231
G +ER + + + V + + + L L L +R V +A+ A+
Sbjct: 60 RKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVER--RVREALTAVGA 117
Query: 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 291
S + HC L GE++RV IA + MRP VL +DEP LD M+ L+
Sbjct: 118 SGLRERPT--HC----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 292 KLASTGCTLLFT 303
+L + G T++ +
Sbjct: 172 RLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 6e-18
Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 132 YALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGA-------KSEMPYG 182
+ L +T I G + +GKSTLLR IAG + G + +NG K +P
Sbjct: 19 FDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQ 73
Query: 183 --SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
G V ++ L L VRE L + + + + V++ + + L N+
Sbjct: 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKRNR---EDRISVDELLDLLGLDHLLNR--- 127
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCT 299
Y L GE++RV +AR L +P +L +DEP LD L ++ LK++
Sbjct: 128 ---YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP 184
Query: 300 LLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
++F + +E L DRI ++ +G + G
Sbjct: 185 VIF-VTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 8e-18
Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 44/245 (17%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+ T + K +K + PG ++GP+ +GKSTLLR + G + ++ G
Sbjct: 4 ENLSKTYPNGK----KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---G 56
Query: 169 EVFVNG-------------AKSEMPYGSYGFVERETTLIGSLTVRE-----YLYYSALLQ 210
V ++G + ++ G + ++ LI L+V E L + +
Sbjct: 57 SVLIDGTDINKLKGKALRQLRRQI-----GMIFQQFNLIERLSVLENVLSGRLGRRSTWR 111
Query: 211 -LPGFFCQRKNVVEDAIHAMS---LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266
L G F K + A+ A+ L D A + + G G+++RV IAR L+ +P
Sbjct: 112 SLFGLF--PKEEKQRALAALERVGLLDKAYQRAD---QLSG---GQQQRVAIARALMQQP 163
Query: 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325
++ DEP+ LD S+ +M LK++ G T++ +++Q DRI L +G
Sbjct: 164 KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKDGR 222
Query: 326 TLFFG 330
+F G
Sbjct: 223 IVFDG 227
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 1e-17
Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 119 RRYSDKV--VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNG- 174
+ Y KV V+ + A G +T ++G +GK+TLLR IA L P S G+V ++G
Sbjct: 9 KSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS----GKVTIDGV 64
Query: 175 ---AKSEMPYGSYGFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMS 230
G + E L LT RE L Y++ L L + K + + +
Sbjct: 65 DTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK--EIKARIAELSKRLQ 122
Query: 231 LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
L +Y ++ +G G +++V IAR LV P +L +DEP LD + +
Sbjct: 123 LLEYLDRRVGE------FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176
Query: 291 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
K+L + G ++F+ + EV L DR+ +L G + G
Sbjct: 177 KQLKNEGRAVIFS-SHIMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 2e-17
Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 42/240 (17%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G V+ + + + G + I+G + SGKSTLLR I G L
Sbjct: 19 GDRVILDGVDLDVP------------------RGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 163 SARMYGEVFVNGAKSEMPYGS----------YGFVERETTLIGSLTVRE--YLYYSALLQ 210
GE+ ++G ++P S G + ++ L SLTV E +
Sbjct: 61 DK---GEILIDGE--DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK 115
Query: 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270
LP ++++ + + M L + Y L G R+RV +AR + + P +LF
Sbjct: 116 LP------ESLIRE-LVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168
Query: 271 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+DEP LD +SA ++ +++L + + + + DR+ +L++G + G
Sbjct: 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228
|
Length = 263 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 6e-17
Identities = 55/244 (22%), Positives = 95/244 (38%), Gaps = 32/244 (13%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
GA+ V DL++ I+ G + ++G + GK+TLLRAIAG
Sbjct: 16 GANTVLDDLSLEIE------------------AGELLALIGKSGCGKTTLLRAIAG-FVK 56
Query: 163 SARMYGEVFVNGAKSEM--PYG-SYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQR 218
+A + G + + P+ + + L L V + + + Q +P
Sbjct: 57 AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE 116
Query: 219 KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
+ V DA+ + L D L G ++R+ IAR + + P VL +DEPL L
Sbjct: 117 R--VADALKLVGLGDA------AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 279 DSVSALLMMVTLKKLASTGCTL-LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
D+ M + L L + + + L D+ ++ +G GE A
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
Query: 338 HFSN 341
++
Sbjct: 229 APAD 232
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 7e-17
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 18/214 (8%)
Query: 118 KRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176
+R+ +P G++ ++GP+ SGKSTLLR IAG L G + +NG
Sbjct: 7 SKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQPDS--GRIRLNGQD 63
Query: 177 -SEMPYG--SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD 233
+ + GFV + L LTVR+ + + ++ + VE+ + + L
Sbjct: 64 ATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR-VEELLELVQLEG 122
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
++ Y L G+R+RV +AR L + P VL +DEP LD+ + L+KL
Sbjct: 123 LGDR------YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKL 176
Query: 294 AS--TGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
T+ T +Q E + DRI ++SNG
Sbjct: 177 HDEVHVTTVFVTHDQE--EAMEVADRIVVMSNGK 208
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-16
Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 32/234 (13%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
K G D++ +++ G + ++GP +GK+T +R I G
Sbjct: 7 TKRFGRVTALDDISFSVE------------------KGEIFGLLGPNGAGKTTTIRMILG 48
Query: 159 RLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FC 216
+ + GEV +G G++ E L + V + L Y A QL G
Sbjct: 49 IILPDS---GEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLA--QLKGLKKE 103
Query: 217 QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276
+ + +++ + + LS+YANK + + L G +++V+ ++ P +L +DEP
Sbjct: 104 EARRRIDEWLERLELSEYANKRV------EELSKGNQQKVQFIAAVIHDPELLILDEPFS 157
Query: 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
LD V+ L+ +++LA G T++ + +Q V L DR+ LL+ G + +G
Sbjct: 158 GLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 78.2 bits (194), Expect = 2e-16
Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 39/212 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVER---- 189
PG + ++GP +GK+TL I+G L ++ G V +G + +P +
Sbjct: 25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGEDITGLP--PHEIARLGIGR 79
Query: 190 ---ETTLIGSLTVREYLYYSALLQLPGFFCQRKNV---------VEDAIHAMSLSDYANK 237
L LTV E + +A + + E+ + + L+D A++
Sbjct: 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADR 139
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 297
G L G++RR+ IAR L P +L +DEP L+ + +++L G
Sbjct: 140 PAGE------LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG 193
Query: 298 CTLLFTINQSSTE-----VFGLFDRICLLSNG 324
T+L E V L DR+ +L G
Sbjct: 194 ITVLL------VEHDMDVVMSLADRVTVLDQG 219
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 3e-16
Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 44/247 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGR-------------LPHSARMYGEVFVNGAKSEMPYG 182
G M ++GP+ SGKSTLLR ++G L + + G + + KS
Sbjct: 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSR---A 86
Query: 183 SYGFVERETTLIGSLTVREYLYYSALLQLP-------GFFCQRKNVVEDAIHAMSLSDYA 235
+ G++ ++ L+ L+V E + AL P F ++K A+ + + +A
Sbjct: 87 NTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA 146
Query: 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295
H + L G+++RV IAR L+ + V+ DEP+ LD SA ++M TL+ +
Sbjct: 147 ------HQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQ 200
Query: 296 T-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSD 354
G T++ T++Q +RI L G+ + G Q F N F D
Sbjct: 201 NDGITVVVTLHQVDY-ALRYCERIVALRQGHVFYDG----SSQQFDNERF---------D 246
Query: 355 HFLRAIN 361
H R+IN
Sbjct: 247 HLYRSIN 253
|
Length = 262 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-16
Identities = 64/217 (29%), Positives = 95/217 (43%), Gaps = 36/217 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------------AKSEM 179
G M I+GP+ +GKSTLLR++ G + + GE+ NG M
Sbjct: 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGM 85
Query: 180 PYGSYGFVER----ETTLIGSLTVREYLYYSALLQLPGFFCQR-KNVVEDAIHAMSLSDY 234
+ + V R E L+G L Y S L G F + K DA+ + + D
Sbjct: 86 IFQQFNLVPRLSVLENVLLGRLG-----YTSTWRSLFGLFSKEDKAQALDALERVGILDK 140
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
A + + G G+++RV IAR LV +P ++ DEP+ LD SA +M LK +
Sbjct: 141 AYQRAS---TLSG---GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDIN 194
Query: 295 -STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
G T++ ++Q DRI L G +F G
Sbjct: 195 QEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIVFDG 230
|
Length = 258 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 5e-16
Identities = 70/235 (29%), Positives = 103/235 (43%), Gaps = 41/235 (17%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
K G V +++ IK G ++GP+ GK+TLLR IAG
Sbjct: 7 SKFYGGFVALDGVSLDIK------------------EGEFFTLLGPSGCGKTTLLRLIAG 48
Query: 159 -RLPHSARMYGEVFVNGAKSEMPYGSY----GFVERETTLIGSLTVREYLYYS-ALLQLP 212
P S GE+ ++G K + V + L LTV E + + L +LP
Sbjct: 49 FETPTS----GEILLDG-KDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP 103
Query: 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272
+ + V +A+ + L YAN+ L G+++RV IAR LV P VL +D
Sbjct: 104 KAEIKER--VAEALDLVQLEGYANR------KPSQLSGGQQQRVAIARALVNEPKVLLLD 155
Query: 273 EPLYHLDSVSALLMMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGN 325
EPL LD M + LK+L G T +F T +Q E + DRI +++ G
Sbjct: 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE--EALTMSDRIAVMNKGK 208
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-16
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
DLT T KR V+ + + G + +GP +GK+T ++ I G + + G
Sbjct: 4 NDLTKTYGKKR-----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---G 55
Query: 169 EVFVNG---AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDA 225
E+ +G K+ G + +LT RE L A L G RK +++
Sbjct: 56 EITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARL--LGI---RKKRIDEV 110
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+ + L D A K + KG G ++R+ IA L+ P +L +DEP LD
Sbjct: 111 LDVVGLKDSAKKKV------KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKE 164
Query: 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328
+ + L G T+L + + S E+ + DRI +++ G +
Sbjct: 165 LRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 34/227 (14%)
Query: 113 VTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ I+ + + D V + G ++GP+ GK+TLLR IAG S+ GE+
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEI 62
Query: 171 FVNGAKSEMPYGSYGFVERET-------TLIGSLTVREYLYYSALLQLPGFF--CQRKNV 221
++G +R L +TV E + + L++ + K
Sbjct: 63 LLDG----EDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKAR 116
Query: 222 VEDAIHAMSLSDYANKLI---GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
VE+A+ + L +A++ G G+++RV +AR LV P VL +DEPL L
Sbjct: 117 VEEALELVGLEGFADRKPHQLSG---------GQQQRVALARALVPEPKVLLLDEPLSAL 167
Query: 279 DSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNG 324
D+ M LK+L G T ++ + E + DRI ++++G
Sbjct: 168 DAKLREQMRKELKELQRELGITFVY-VTHDQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 8e-16
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 18/196 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERE 190
G + ++GP +GK+T ++ + L ++ G V G + G V ++
Sbjct: 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVRRRIGIVFQD 81
Query: 191 TTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
++ LT E LY A L +PG +R+ +++ + + L + A++L+ G
Sbjct: 82 LSVDDELTGWENLYIHARLYGVPG--AERRERIDELLDFVGLLEAADRLV---KTYSG-- 134
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSS 308
G RRR+ IAR LV RP VLF+DEP LD + + ++KL G T+L T
Sbjct: 135 -GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT-THYM 192
Query: 309 TEVFGLFDRICLLSNG 324
E L DR+ ++ +G
Sbjct: 193 EEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 8e-16
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + V++GP+ GK+TLL IAG + S G + +NG + E P G V + L+
Sbjct: 30 SGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAERGVVFQNEALL 86
Query: 195 GSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253
L V + + + LQL G QR+ + + + L +K Y+ L G R
Sbjct: 87 PWLNVIDNVAFG--LQLRGIEKAQRREIAHQMLALVGLEGAEHK------YIWQLSGGMR 138
Query: 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313
+RV IAR L + P +L +DEP LD+++ M L L + I E
Sbjct: 139 QRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALF 198
Query: 314 LFDRICLLSNG 324
L R+ +LS G
Sbjct: 199 LATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 38/251 (15%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L++ G + + + + G I+G + SGKSTL R +AG S+ G
Sbjct: 7 RNLSIVYGGGKFAF-HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---G 62
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLI-----GSL----TVREYLYYSALLQLPGFFCQRK 219
+ ++G P R ++ SL TV L S L+ G ++
Sbjct: 63 SILLDGKPLA-PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQ 119
Query: 220 NVVEDAIHAMSLS-----DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ + + + L ++L GG +R+R+ IAR L+ P +L +DEP
Sbjct: 120 RI-AELLDQVGLPPSFLDRRPHELSGG----------QRQRIAIARALIPEPKLLILDEP 168
Query: 275 LYHLD-SVSALL--MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
LD SV A + +++ LKK G T LF I+ V + DRI ++ NG + G
Sbjct: 169 TSALDVSVQAQILNLLLELKK--ERGLTYLF-ISHDLALVEHMCDRIAVMDNGQIVEIGP 225
Query: 332 TLACLQHFSNA 342
T L H S+
Sbjct: 226 TEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 22/232 (9%)
Query: 120 RYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-S 177
RY + K V N G V++GP+ SGK+T L+ I + ++ GE+ ++G S
Sbjct: 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDGEDIS 66
Query: 178 EMP----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV-VEDAIHAMSL- 231
++ G+V ++ L LTV E + + + +L G+ +R ++ + + L
Sbjct: 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENI--ATVPKLLGWDKERIKKRADELLDLVGLD 124
Query: 232 -SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
S+YA++ Y L G+++RV +AR L P +L +DEP LD ++ + +
Sbjct: 125 PSEYADR------YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178
Query: 291 KKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
K+L G T++F + E L DRI ++ G + + L + +N
Sbjct: 179 KELQKELGKTIVF-VTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229
|
Length = 309 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----SEMPYGS--YGFVER 189
G + ++GP+ +GKSTLLR IAG L G + +NG S + GFV +
Sbjct: 28 GELVALLGPSGAGKSTLLRIIAG-LETPDA--GRIRLNGRVLFDVSNLAVRDRKVGFVFQ 84
Query: 190 ETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
L +TV + + + ++ + + VE+ + + L A++ Y L
Sbjct: 85 HYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR------YPAQL 138
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGCTLLF-TINQ 306
G+R+RV +AR L + P VL +DEP LD+ V L K G T +F T +Q
Sbjct: 139 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ 198
Query: 307 SSTEVFGLFDRICLLSNGN 325
E L DR+ +L+ G
Sbjct: 199 E--EALELADRVVVLNQGR 215
|
Length = 345 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-15
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 27/208 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG------AKSEMPYGSYGFV 187
G + I+GP+ +GKSTLL IAG P S GE+ +NG +E P +
Sbjct: 24 AGEIVAILGPSGAGKSTLLNLIAGFETPAS----GEILINGVDHTASPPAERPVSM---L 76
Query: 188 ERETTLIGSLTVREY--LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
+E L LTV + L S L+L QR+ VE A + L+ + +L G
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAE--QREK-VEAAAAQVGLAGFLKRLPG----- 128
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTI 304
L G+R+RV +AR LV +L +DEP LD M+ + +L TLL
Sbjct: 129 -ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT 187
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ + + DR+ L NG G T
Sbjct: 188 HHPE-DAARIADRVVFLDNGRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 3e-15
Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 23/180 (12%)
Query: 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS----YGFV 187
A PG++T ++GP SGKSTLLR +AG L A G V + G + + V
Sbjct: 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRARARRVALV 80
Query: 188 ERETTLIGSLTVREYLYYSALLQLP------GFFCQRKNVVEDAIHAMSLSDYANKLIGG 241
E+++ LTVR+ + AL ++P G VV+ A+ LS A++
Sbjct: 81 EQDSDTAVPLTVRDVV---ALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR---- 133
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
M L GER+RV +AR L P +L +DEP HLD + L + +++LA+TG T++
Sbjct: 134 --DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 4e-15
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 25/198 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNG------AKSEMPYGSYGFVE 188
G + IMGP+ +GKSTLL IAG + P S G + VN A + P S F
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPAS----GSIKVNDQSHTGLAPYQRPV-SMLF-- 76
Query: 189 RETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
+E L LTVR+ + L PG +++ V DA + ++DY ++L
Sbjct: 77 QENNLFAHLTVRQNI---GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQ----- 128
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
L G+R+RV +AR LV +L +DEP LD + M+ +K+L S L +
Sbjct: 129 -LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187
Query: 307 SSTEVFGLFDRICLLSNG 324
++ + +I ++S G
Sbjct: 188 HLSDARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 5e-15
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 41/210 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSY-----G 185
G I+GP+ SGKSTLL + G ++ GEV +NG SE G
Sbjct: 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSEKELAKLRRKKIG 86
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS----LSD-----YAN 236
FV + L+ LTV E + L+ + + A + L D +
Sbjct: 87 FVFQNFNLLPDLTVLENVELPLLIAG-----KSAGRRKRAAEELLEVLGLEDRLLKKKPS 141
Query: 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-S 295
+L GG +++RV IAR L+ P ++ DEP +LDS +A ++ L++L
Sbjct: 142 ELSGG----------QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191
Query: 296 TGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
G T++ T + E+ DR+ L +G
Sbjct: 192 RGKTIIMVTHDP---ELAKYADRVIELKDG 218
|
Length = 226 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 7e-15
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Query: 150 STLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYGSY-----GFVERETTLIGSLTVREYL 203
STLL+ I G L ++ G + ++G + + G V ++ L LTVRE L
Sbjct: 1 STLLKLITGLLQPTS---GTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263
++ + + E+A+ + L D+ ++ + L G+++RV IAR L+
Sbjct: 58 FFGLRDK------EADARAEEALERVGLPDFLDRE-----PVGTLSGGQKQRVAIARALL 106
Query: 264 MRPHVLFIDEP 274
+P +L +DEP
Sbjct: 107 KKPKLLLLDEP 117
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 8e-15
Identities = 64/250 (25%), Positives = 108/250 (43%), Gaps = 32/250 (12%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY--GEVFVN 173
K+ K V ++ G + VIMG + SGKST +R + RL P + +++ GE +
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRML-NRLIEPTAGQIFIDGENIMK 59
Query: 174 GAKSEMPYGS---YGFVERETTLIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAM 229
+ E+ G V ++ L +T+ + LL P +RK + + +
Sbjct: 60 QSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQ--ERKEKALELLKLV 117
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
L +Y H Y L G ++RV +AR L P +L +DE LD + M
Sbjct: 118 GLEEYE------HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171
Query: 290 LKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPI 348
LKKL +T T++F I E + DRI ++ G + G P I
Sbjct: 172 LKKLQATLQKTIVF-ITHDLDEAIRIGDRIVIMKAGEIV-------------QVGTPDEI 217
Query: 349 MQSPSDHFLR 358
+++P++ ++
Sbjct: 218 LRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-14
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 30/240 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G ++G + GKSTLL I+G P S G V + G + P V + +L
Sbjct: 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTS----GGVILEGKQITEPGPDRMVVFQNYSL 65
Query: 194 IGSLTVREYLYY---SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
+ LTVRE + L L +R+ +VE+ I + L++ A+K G L
Sbjct: 66 LPWLTVRENIALAVDRVLPDLSK--SERRAIVEEHIALVGLTEAADKRPGQ------LSG 117
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSST 309
G ++RV IAR L +RP VL +DEP LD+++ + L ++ T+L +
Sbjct: 118 GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM-VTHDVD 176
Query: 310 EVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCP-----IMQSPSDHFLRAINTDF 364
E L DR+ +L+NG G+ L FP P +++ PS + LR F
Sbjct: 177 EALLLSDRVVMLTNGPAANIGQIL-------EVPFPRPRDRLEVVEDPSYYDLRNEALYF 229
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 4e-14
Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 18/198 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVF---VNGAKSEMPYG---SYGFV 187
PG + ++ GP+ SGK+TLL I G R + +V + GA + + G++
Sbjct: 30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL--KVLGQELYGASEKELVQLRRNIGYI 87
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
+ L+G LT R+ + + LQ + + + + A+ L D+ + Y
Sbjct: 88 FQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY------YPHN 141
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQ 306
L G+++RV IAR LV RP ++ DEP LDS S ++ ++KLA GCT+L +
Sbjct: 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD 201
Query: 307 SSTEVFGLFDRICLLSNG 324
+ + + DRI + +G
Sbjct: 202 N--RILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 5e-14
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 15/206 (7%)
Query: 140 VIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK-SEMP--YGSYGFVERETTLIG 195
VI+GP SGKS LL IAG + P S G++ +NG + +P +V + L
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDS----GKILLNGKDITNLPPEKRDISYVPQNYALFP 84
Query: 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
+TV + + Y + K +E + ++ + L+ + + L GE++R
Sbjct: 85 HMTVYKNIAYGLKKRK-----VDKKEIERKVLEIAEMLGIDHLL--NRKPETLSGGEQQR 137
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315
V IAR LV+ P +L +DEP LD + + LKK+ + + E + L
Sbjct: 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALA 197
Query: 316 DRICLLSNGNTLFFGETLACLQHFSN 341
D++ ++ NG + G+ + N
Sbjct: 198 DKVAIMLNGKLIQVGKPEEVFKKPKN 223
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 6e-14
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 20/197 (10%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVER--ETT 192
G + ++GP +GK+TLLRAI G +P + G V V GA + G+V + E
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASPGKGWRHIGYVPQRHEFA 61
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKNV-----VEDAIHAMSLSDYANKLIGGHCYMKG 247
++V + S G+ +R V V DA+ + L++ A++ +G
Sbjct: 62 WDFPISVAHTV-MSGRTGHIGWL-RRPCVADFAAVRDALRRVGLTELADRPVG------E 113
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L G+R+RV +AR L RP VL +DEP LD + L+ +LA G +L T
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT-THD 172
Query: 308 STEVFGLFDRICLLSNG 324
+ DR+ LL NG
Sbjct: 173 LAQAMATCDRVVLL-NG 188
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-14
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 134 LPGT-MTVIMGPAKSGKSTLLRAIAGRL-PHSARMY--GEVFVNGAKS-EMP--YGSYGF 186
LPG +T I G + SGK+TL+R IAG P + G + K +P G+
Sbjct: 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-----LSDYANKLIGG 241
V +E L L+VR L Y P + + + + + L +L GG
Sbjct: 80 VFQEARLFPHLSVRGNLRYGMKRARP----SERRISFERVIELLGIGHLLGRLPGRLSGG 135
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTL 300
E++RV I R L+ P +L +DEPL LD ++ L++L A G +
Sbjct: 136 ----------EKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
L+ ++ S EV L DR+ +L +G G
Sbjct: 186 LY-VSHSLQEVLRLADRVVVLEDGRVAAAG 214
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 6e-14
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 33/230 (14%)
Query: 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE 169
+L+ ++ G+R + PG + I+GP +GKSTLL+A++G L + GE
Sbjct: 6 NLSYSLAGRRLLDGVSLD-----LRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GE 57
Query: 170 VFVNG-AKSEMPYGSY----GFVERETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVE 223
V +NG + P + + ++L TV+E + + + + + +
Sbjct: 58 VTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA 117
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL------VMRPHVLFIDEPLYH 277
A+ A LS A + + L GE++RV++AR L V LF+DEP
Sbjct: 118 QALAATDLSGLAGRDY------RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
Query: 278 LDSVSALLMMVTLKKLASTG---CTLLFTINQSSTEVFGLFDRICLLSNG 324
LD + ++LA G +L +N ++ DRI LL G
Sbjct: 172 LDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYA----DRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 9e-14
Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 24/193 (12%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA-----K 176
+ N G +T ++G + +GKSTLL + G L + GE+ VNG
Sbjct: 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVNGIDLRDLS 389
Query: 177 SEMPYGSYGFVERETTLIGSLTVRE--YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY 234
E +V + L + T+RE L + A+ L ++
Sbjct: 390 PEAWRKQISWVSQNPYLF-AGTIRENILLARPDA---------SDEEIIAALDQAGLLEF 439
Query: 235 ANKLIGGHCYM----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
K G + GL G+ +R+ +AR L+ +L +DEP HLD+ + +++ L
Sbjct: 440 VPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL 499
Query: 291 KKLASTGCTLLFT 303
++LA L+ T
Sbjct: 500 QELAKQKTVLVIT 512
|
Length = 559 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 9e-14
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA------KSEMPY--GSYGF 186
G + GP+ +GK+TLL+ + G L S G+V + G ++P G
Sbjct: 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAGEDVNRLRGRQLPLLRRRIGV 83
Query: 187 VERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++ L+ TV E + ++ QR+ V A+ + L A +
Sbjct: 84 VFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR--VGAALRQVGLEHKA------DAFP 135
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+ L GE++RV IAR +V P +L DEP +LD + ++ LK+L G T++
Sbjct: 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVA 193
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 31/203 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGA------KSEMPY--GSYGF 186
G ++GP+ +GKSTLL+ I LP S G + VNG +PY G
Sbjct: 27 GEFVFLVGPSGAGKSTLLKLIYKEELPTS----GTIRVNGQDVSDLRGRAIPYLRRKIGV 82
Query: 187 VERETTLIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++ L+ V E + ++ + +P +++ V A+ + LS
Sbjct: 83 VFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR--VPAALELVGLSHKH------RALP 134
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L GE++RV IAR +V P +L DEP +LD + +M LKK+ G T++ +
Sbjct: 135 AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194
Query: 306 QSSTEVFGLFD----RICLLSNG 324
L D R+ L G
Sbjct: 195 AKE-----LVDTTRHRVIALERG 212
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 65/256 (25%), Positives = 104/256 (40%), Gaps = 39/256 (15%)
Query: 90 PLPEGAAVARKIAGAS--VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKS 147
P P+ I + K+++V GK K++ + PG I+GP +
Sbjct: 14 PEPKEPKKRHPIEINEPLIELKNVSVRRNGK-----KILGDLSWQVNPGEHWAIVGPNGA 68
Query: 148 GKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG----SLTVREYL 203
GK+TLL + G P S+ G+V + G G F R+ IG L R +
Sbjct: 69 GKTTLLSLLTGEHPPSS---GDVTLLG--RRFGKGETIFELRKR--IGLVSSELHERFRV 121
Query: 204 YYSAL-LQLPGFFC-----------QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
+ + L GFF + + + + A++ L G
Sbjct: 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR------PFGSLSQG 175
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSST 309
E+RRV IAR LV P +L +DEP LD ++ ++ L++LA++ LLF + +
Sbjct: 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLF-VTHHAE 234
Query: 310 EVFGLFDRICLLSNGN 325
E+ F LL G
Sbjct: 235 EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 20/227 (8%)
Query: 112 TVTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE 169
+ I+G + + DK V + + PG + ++GP +GK+T R I G L + GE
Sbjct: 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GE 58
Query: 170 VFVNGAK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
+ NG S+ G++ E L +TV + L Y A L K + + I
Sbjct: 59 ITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAEL---------KGMPKAEI-Q 108
Query: 229 MSLSDYANKL-IGGHCY--MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
L + +L I G +K L G +++++ ++ P +L +DEP LD V+ L
Sbjct: 109 KKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVEL 168
Query: 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ + +L G T++F+ + V L DR+ +L G T+ +G
Sbjct: 169 LKDAIFELKEEGATIIFS-SHRMEHVEELCDRLLMLKKGQTVLYGTV 214
|
Length = 300 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-13
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 29/218 (13%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMY-GEVFVNGA 175
KR + + N G V++GP+ GK+T LR IAG P S R+Y G V
Sbjct: 8 KRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL 67
Query: 176 KSE-----MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV---VEDAIH 227
+ M + +Y L +TV + + + L+L + + V +
Sbjct: 68 PPKDRDIAMVFQNYA-------LYPHMTVYDNIAFG--LKLRKV--PKDEIDERVREVAE 116
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287
+ + ++ K L G+R+RV + R +V P V +DEPL +LD+ + M
Sbjct: 117 LLQIEHLLDR------KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170
Query: 288 VTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
LK+L G T ++ + E + DRI ++++G
Sbjct: 171 AELKRLQQRLGTTTIY-VTHDQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-13
Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 44/211 (20%)
Query: 113 VTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ IK + + D V+K + G + VI+GP+ SGKSTLLR I + G +
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTI 57
Query: 171 FVNGAK------------SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
++G K ++ G V ++ L LTV E + A +++ G +
Sbjct: 58 IIDGLKLTDDKKNINELRQKV-----GMVFQQFNLFPHLTVLENITL-APIKVKGM--SK 109
Query: 219 KNVVEDAIHAMS---LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275
E A+ + L+D A+ Y L G+++RV IAR L M P V+ DEP
Sbjct: 110 AEAEERALELLEKVGLADKADA------YPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163
Query: 276 YHLDSVSALLMMV-----TLKKLASTGCTLL 301
LD +V +K LA G T++
Sbjct: 164 SALDP-----ELVGEVLDVMKDLAEEGMTMV 189
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 68/234 (29%), Positives = 104/234 (44%), Gaps = 46/234 (19%)
Query: 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNG------ 174
+ +K+ N PG I+GP+ +GKSTLLR I RL P S G + + G
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRLVEPSS----GSILLEGTDITKL 69
Query: 175 ---------AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVED 224
+ M + Y +ER T L L R L Y + L G F + ED
Sbjct: 70 RGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGR--LGYKPTWRSLLGRFSE-----ED 122
Query: 225 AIHAMS------LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
A+S L+D A + L G+++RV IAR L +P ++ DEP+ L
Sbjct: 123 KERALSALERVGLADKAYQRA------DQLSGGQQQRVAIARALAQQPDLILADEPIASL 176
Query: 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLF-DRICLLSNGNTLFFG 330
D ++ +M LK++ G T++ ++Q ++ + DRI L G +F G
Sbjct: 177 DPKTSKQVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDG 228
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 3e-13
Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 26/153 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G V+ GP SGK+TLLR IAG LP +A G + ++G + P V +
Sbjct: 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDGGDIDDPD-----VAEACHYL 78
Query: 195 G-------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
G +LTV E L + A F + + A+ A+ L+ A+ L G+
Sbjct: 79 GHRNAMKPALTVAENLEFWA-----AFLGGEELDIAAALEAVGLAPLAH-LPFGY----- 127
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
L G++RRV +AR LV + +DEP LD+
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160
|
Length = 207 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 5e-13
Identities = 57/216 (26%), Positives = 87/216 (40%), Gaps = 30/216 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVER---- 189
PG + ++GP +GK+TL I G S+ G V G + +P +
Sbjct: 29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLP--PHRIARLGIAR 83
Query: 190 ---ETTLIGSLTVRE--------YLYYSALLQLPGFFCQRKNVVEDAIHA---MSLSDYA 235
T L LTV E L S LL P + + E A + L + A
Sbjct: 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA 143
Query: 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295
++ G L G++RR+ IAR L +P +L +DEP L+ + +++L
Sbjct: 144 DRPAGN------LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
G + I V GL DRI +L+ G + G
Sbjct: 198 RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 6e-13
Identities = 52/236 (22%), Positives = 90/236 (38%), Gaps = 44/236 (18%)
Query: 87 PSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAK 146
PL A V A S+ + ++V G+ ++ + PG ++GP+
Sbjct: 304 APRPLAGKAPVTAAPA-PSLEFSGVSVAYPGR----RPALRPVSFTVPPGERVALVGPSG 358
Query: 147 SGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205
+GKSTLL + G P G + VNG + + R+ + +
Sbjct: 359 AGKSTLLNLLLGFVDPTE----GSIAVNG--------------VPLADADADSWRDQIAW 400
Query: 206 SALLQLPGFFCQ--RKNV-----------VEDAIHAMSLSDYANKLIGGHCYM-----KG 247
Q P F +N+ + +A+ L ++ L G G
Sbjct: 401 VP--QHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAG 458
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
L G+ +R+ +AR + +L +DEP HLD+ + ++ L+ LA LL T
Sbjct: 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVT 514
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 7e-13
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 21/175 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG----FVERE 190
G + GP GK+TLLR +AG L + GEV NG ++
Sbjct: 25 AGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGTALAEQRDEPHRNILYLGHL 81
Query: 191 TTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
L L+ E L +++A+ + +EDA+ A+ L+ + + L
Sbjct: 82 PGLKPELSALENLHFWAAIHG------GAQRTIEDALAAVGLTGFEDLPAA------QLS 129
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLASTGCTLLFT 303
G++RR+ +AR + R + +DEP LD ALL + LA G LL T
Sbjct: 130 AGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTT 184
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 7e-13
Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 18/221 (8%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNG----A 175
+K + G +T ++GP+ GKSTLLR + L A GEV ++G
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 176 KSEMPYG---SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
G V ++ ++ + + Y L + VE+A+ +L
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW 130
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
D + GL G+++R+ +AR L P VL +DEP LD +S + + +
Sbjct: 131 DEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAE 186
Query: 293 LASTGCTLLFTIN-QSSTEVFGLFDRICLLSNGNTLFFGET 332
L ++ T N Q + V DR L NG + FG T
Sbjct: 187 LKKEYTIVIVTHNMQQAARV---ADRTAFLLNGRLVEFGPT 224
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 7e-13
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 36/243 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYG--------SYG 185
G + VIMG + SGKSTLLR I + ++ G+V ++G + M
Sbjct: 49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELRELRRKKIS 105
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQ-RKNVVEDAIHAMSLSDYANKLIGGHCY 244
V + L+ TV E + + L++ G R+ +A+ + L + +K
Sbjct: 106 MVFQSFALLPHRTVLENVAFG--LEVQGVPRAEREERAAEALELVGLEGWEHKYPDE--- 160
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFT 303
L G ++RV +AR L + P +L +DE LD + M L +L A T++F
Sbjct: 161 ---LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVF- 216
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTD 363
I E L DRI ++ +G + G P I+ +P++ ++R
Sbjct: 217 ITHDLDEALRLGDRIAIMKDGRLV-------------QVGTPEEILTNPANDYVREFFRG 263
Query: 364 FDR 366
DR
Sbjct: 264 VDR 266
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 8e-13
Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 68/201 (33%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVER 189
PG I+GP+ SGKSTLL+ + ++ GE+ ++G ++ S +V +
Sbjct: 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGVDLRDLDLESLRKNIAYVPQ 83
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
+ L S T+RE N+ LS
Sbjct: 84 DPFLF-SGTIRE------------------NI---------LSG---------------- 99
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF------T 303
G+R+R+ IAR L+ P +L +DE LD + L++ L+ LA G T++ T
Sbjct: 100 -GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST 157
Query: 304 INQSSTEVFGLFDRICLLSNG 324
I DRI +L +G
Sbjct: 158 IRD--------ADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 17/200 (8%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERET 191
G + +GP +GK+T +R + L ++ G V G + S G V +
Sbjct: 19 GEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYA 75
Query: 192 TLIGSLTVREYLY-YSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
++ LT RE L L LP + + E+ + L + A++ +G G
Sbjct: 76 SVDEDLTGRENLEMMGRLYGLPKDEAEER--AEELLELFELGEAADRPVG---TYSG--- 127
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
G RRR+ IA L+ +P VLF+DEP LD + + ++ L G T+L T E
Sbjct: 128 GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT-THYMEE 186
Query: 311 VFGLFDRICLLSNGNTLFFG 330
L DRI ++ +G + G
Sbjct: 187 ADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-12
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 46/252 (18%)
Query: 74 ASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTV---TIKGKRRYSDKVVKSSN 130
A P L P A + ++L+ + KG VK+ +
Sbjct: 257 AVPRLGD-EKIIRLPRRGPLRAEPLLSV-------RNLSKRYGSRKGLFVRERGEVKAVD 308
Query: 131 GYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS---- 183
+ G ++G + SGKSTL R +AG LP S+ G + +G ++ G
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRL 365
Query: 184 -----YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANK 237
F + ++L +TV + L + G +R+ V + + + L ++ ++
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR 425
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL----LMMVT--LK 291
Y L G+R+RV IAR L + P +L +DEP VSAL V LK
Sbjct: 426 ------YPHELSGGQRQRVAIARALALEPKLLILDEP------VSALDVSVQAQVLNLLK 473
Query: 292 KL-ASTGCTLLF 302
L G T LF
Sbjct: 474 DLQEELGLTYLF 485
|
Length = 539 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 26/179 (14%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G I GP +GK+TLLR +AG L A GEV+ G + SY +
Sbjct: 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESY---HQALLY 79
Query: 194 IG-------SLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
+G LT E L ++ + +A+ + L+ + +G
Sbjct: 80 LGHQPGIKTELTALENLHFWQRFHG-----SGNAATIWEALAQVGLAGLEDLPVG----- 129
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLASTGCTLLFT 303
L G++RRV +AR + + +DEP LD ALL + A G LL T
Sbjct: 130 -QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTT 187
|
Length = 209 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 21/200 (10%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYG--SYGFVERET 191
G + ++GP+ SGK+TLLR IAG L G + G +++P + GFV +
Sbjct: 27 SGELVALLGPSGSGKTTLLRLIAG-LERPDS--GTILFGGEDATDVPVQERNVGFVFQHY 83
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA----MSLSDYANKLIGGHCYMKG 247
L +TV + + + L P + + +H + L A++ Y
Sbjct: 84 ALFRHMTVFDNVAF-GLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR------YPAQ 136
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF-TIN 305
L G+R+RV +AR L + P VL +DEP LD+ + L++L T +F T +
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196
Query: 306 QSSTEVFGLFDRICLLSNGN 325
Q E + DR+ +++ G
Sbjct: 197 QE--EALEVADRVVVMNKGR 214
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-12
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 24/178 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG----FVERET 191
G + GP SGK+TLLR +AG P A G V +NG + S ++
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPLDFQRDSIARGLLYLGHAP 82
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQ--RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
+ +L+V E L F+ VE+A+ + L+ + + L
Sbjct: 83 GIKTTLSVLENLR---------FWHADHSDEQVEEALARVGLNGF------EDRPVAQLS 127
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
G++RRV +AR L+ + +DEP LD + + G ++ T +Q
Sbjct: 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 6e-12
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 36/211 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY-------GF 186
G + ++G +GK+TLL+ I G LP G + +G + +P + G+
Sbjct: 25 EGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLP--PHERARAGIGY 79
Query: 187 V--ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-----SLSDYANKLI 239
V R + LTV E L L G + +R+ + + + L + +L
Sbjct: 80 VPEGRR--IFPELTVEENL-------LLGAYARRRAKRKARLERVYELFPRLKERRKQL- 129
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
G + G GE++ + IAR L+ RP +L +DEP L + +++L G T
Sbjct: 130 AGT--LSG---GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVT 184
Query: 300 LLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+L + Q++ + DR +L G + G
Sbjct: 185 ILL-VEQNARFALEIADRAYVLERGRVVLEG 214
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 6e-12
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 60/244 (24%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+V + G+ ++ + PG + I+GP +GKSTLLRA++G L + G
Sbjct: 6 RNLSVRLGGRT-----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---G 57
Query: 169 EVFVNGAKSEMPYGSYGFVER---------ETTLIGSLTVREYLYYSALLQLPGFFCQR- 218
EV +NG P + E ++L TV E + A+ + P +
Sbjct: 58 EVRLNGR----PLADWSPAELARRRAVLPQHSSLSFPFTVEEVV---AMGRAPHGLSRAE 110
Query: 219 -KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV------MRPHVLFI 271
+V A+ + L+ A + Y + L GE++RV++AR L P L +
Sbjct: 111 DDALVAAALAQVDLAHLAGRD-----YPQ-LSGGEQQRVQLARVLAQLWEPDGPPRWLLL 164
Query: 272 DEPLYHLDSVSAL------LMMVTLKKLASTG----CTLLFTINQSSTEVFGLF-DRICL 320
DEP SAL ++ ++LA +L +N ++ + DRI L
Sbjct: 165 DEP------TSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAA-----RYADRIVL 213
Query: 321 LSNG 324
L G
Sbjct: 214 LHQG 217
|
Length = 258 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-12
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 30/221 (13%)
Query: 141 IMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLT 198
++GP+ GK+TLLR +AG + + M V + + V + L +T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRH--INMVFQSYALFPHMT 58
Query: 199 VREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257
V E + + ++ +P + K V +A+ + L ++A++ L G+++RV
Sbjct: 59 VEENVAFGLKMRKVPR--AEIKPRVLEALRLVQLEEFADR------KPHQLSGGQQQRVA 110
Query: 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF-TINQSSTEVFGLF 315
+AR LV +P +L +DEPL LD M + LK + G T +F T +Q E +
Sbjct: 111 LARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE--EAMTMS 168
Query: 316 DRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356
DRI ++ G + G P I + P++ F
Sbjct: 169 DRIAIMRKGK-------------IAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 50/250 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA----------------KSEM 179
G + VIMG + SGKSTL+R + + + GE+ V+G K M
Sbjct: 54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTR---GEILVDGKDIAKLSAAELRELRRKKISM 110
Query: 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKL 238
+ S+ L+ TV E + + L++ G +R+ +A+ + L YA+K
Sbjct: 111 VFQSFA-------LLPHRTVLENVAFG--LEVQGVPKAEREERALEALELVGLEGYADK- 160
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTG 297
Y L G ++RV +AR L P +L +DE LD + M L +L A
Sbjct: 161 -----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215
Query: 298 CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL 357
T++F I E + DRI ++ +G +Q G P I+ +P++ ++
Sbjct: 216 KTIVF-ITHDLDEALRIGDRIAIMKDGEI---------VQV----GTPEEILLNPANDYV 261
Query: 358 RAINTDFDRI 367
R + DR
Sbjct: 262 RDFVRNVDRS 271
|
Length = 386 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 8e-12
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 40/237 (16%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMPYG------SYGFV 187
G V++GP+ SGK+T ++ I RL P S GE+F++G + G+V
Sbjct: 27 GEFLVLIGPSGSGKTTTMKMI-NRLIEPTS----GEIFIDG-EDIREQDPVELRRKIGYV 80
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSD--YANKLIGGHCY 244
++ L +TV E + + + +L + + + ++ + + L +A++ Y
Sbjct: 81 IQQIGLFPHMTVEENI--ALVPKLLKWPKEKIRERADELLALVGLDPAEFADR------Y 132
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT 303
L G+++RV +AR L P +L +DEP LD ++ + K+L G T++F
Sbjct: 133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVF- 191
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+ E F L DRI ++ NG + G P I++SP++ F+
Sbjct: 192 VTHDIDEAFRLADRIAIMKNGEIVQVGT-------------PDEILRSPANDFVAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 34/233 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---------SEMPYGSYGF 186
G + VIMG + SGKST++R + RL R G+V ++G E+
Sbjct: 54 GEIFVIMGLSGSGKSTMVRLL-NRLIEPTR--GQVLIDGVDIAKISDAELREVRRKKIAM 110
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFC-QRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V + L+ +TV + + ++L G +R+ DA+ + L +YA H Y
Sbjct: 111 VFQSFALMPHMTVLDNTAFG--MELAGINAEERREKALDALRQVGLENYA------HSYP 162
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G R+RV +AR L + P +L +DE LD + M L KL + + I+
Sbjct: 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222
Query: 306 QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLR 358
E + DRI ++ NG + G P I+ +P++ ++R
Sbjct: 223 HDLDEAMRIGDRIAIMQNGEVV-------------QVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-11
Identities = 64/199 (32%), Positives = 93/199 (46%), Gaps = 27/199 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK------SEMPYGSYGFVE 188
G +T I+GP+ SGKSTLL IAG P S G V +NG ++ P +
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQS----GRVLINGVDVTAAPPADRPVSM---LF 76
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
+E L LTV + + L PG + + +E A+ + L+ +L G
Sbjct: 77 QENNLFAHLTVEQNV---GLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGE----- 128
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTIN 305
L GER+RV +AR LV VL +DEP LD ++ A ++ + L A T T+L +
Sbjct: 129 -LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187
Query: 306 QSSTEVFGLFDRICLLSNG 324
Q + L R+ L NG
Sbjct: 188 QPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 34/228 (14%)
Query: 120 RYSD--KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
YSD +K N G +T I+G +GKSTL + + G L S+ G + +G
Sbjct: 14 NYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDG--K 68
Query: 178 EMPYGSYGFVE-RETTLIG-----------SLTVREYLYYSAL-LQLPGFFCQRKNVVED 224
+ Y G ++ RE+ +G S +V + + + A+ L+LP +++ V++
Sbjct: 69 PIDYSRKGLMKLRES--VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR--VDN 124
Query: 225 AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
A+ + +K HC L G+++RV IA LVM P VL +DEP LD +
Sbjct: 125 ALKRTGIEHLKDKPT--HC----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 285 LMMVTLKKLAS-TGCTLLFTINQSSTEVFGLF-DRICLLSNGNTLFFG 330
+M L ++ G T++ I ++ L+ D + ++ G + G
Sbjct: 179 EIMKLLVEMQKELGLTII--IATHDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 31/220 (14%)
Query: 120 RYSD--KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK 176
Y D + +K N A G M ++GP +GKSTL G L P S GEV + G
Sbjct: 10 SYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS----GEVLIKGE- 64
Query: 177 SEMPYGSYGFVERETTL----------IGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDA 225
+ Y +E T+ + + TV E + + L L L +++ V++A
Sbjct: 65 -PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR--VKEA 121
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+ A+ + + NK H ++ G G+++RV IA L M+P ++ +DEP LD + A
Sbjct: 122 LKAVGMEGFENK--PPH-HLSG---GQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLF-DRICLLSNG 324
+M L L G T++ I+ ++ ++ D++ ++S+G
Sbjct: 176 IMKLLYDLNKEGITII--ISTHDVDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 41/186 (22%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----------SEMPYGS 183
G + VI+GP+ SGKSTLLR + G + G + V+G ++
Sbjct: 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDILKLRRKV---- 79
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS------LSDYANK 237
G V ++ L LTV E + A +++ K + A+ L+D A+
Sbjct: 80 -GMVFQQFNLFPHLTVLENVTL-APVKVKK---LSKAEARE--KALELLEKVGLADKADA 132
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD--SVSALLMMVTLKKLAS 295
Y L G+++RV IAR L M P V+ DEP LD V +L +K LA
Sbjct: 133 ------YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD--VMKDLAE 184
Query: 296 TGCTLL 301
G T++
Sbjct: 185 EGMTMI 190
|
Length = 240 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 29/228 (12%)
Query: 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
S+ LT K + + + A G + +GP +GKST ++ I G LP +
Sbjct: 2 SIRVSSLT-----KLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS 56
Query: 165 RMYGEVFVNG------AKSEMPYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQ 217
G V V G K + G++ L + VREYL + A + + G
Sbjct: 57 ---GSVQVCGEDVLQNPKEVQR--NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKG--QL 109
Query: 218 RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277
K VE+ I + L +K IG L G R+RV +A+ L+ P VL +DEP
Sbjct: 110 LKQRVEEMIELVGLRPEQHKKIGQ------LSKGYRQRVGLAQALIHDPKVLILDEPTTG 163
Query: 278 LDSVSALLMMVTLKKLASTGCTLLFT-INQSSTEVFGLFDRICLLSNG 324
LD + + +K + +L T I Q EV + DR+ +++ G
Sbjct: 164 LDPNQLVEIRNVIKNIGKDKTIILSTHIMQ---EVEAICDRVIIINKG 208
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 3e-11
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 38/215 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----------AKSEMPYGS 183
G + ++G +GK+TLL+ I G + + G + +G A+ +
Sbjct: 28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITGLPPHERARLGI---- 80
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-----SLSDYANKL 238
+V + LTV E L L + + K E + + L + N+
Sbjct: 81 -AYVPEGRRIFPRLTVEEN------LLLGAYARRDKEAQERDLEEVYELFPRLKERRNQR 133
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTG 297
G + G GE++ + IAR L+ RP +L +DEP L + +K+L G
Sbjct: 134 AG---TLSG---GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG 187
Query: 298 CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
T+L + Q++ + DR +L NG + G
Sbjct: 188 MTILL-VEQNARFALEIADRGYVLENGRIVLSGTA 221
|
Length = 237 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYG--SYGFVERETT 192
G V +GP+ GKSTLLR IAG ++ G++F+ + +++P G V +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGEKRMNDVPPAERGVGMVFQSYA 85
Query: 193 LIGSLTVREYLYYSALLQLPGF----FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
L L+V E + + L+L G QR N V + + L D K + G
Sbjct: 86 LYPHLSVAENMSFG--LKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSG------- 136
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQS 307
G+R+RV I R LV P V +DEPL +LD+ + M + + +L G T+++ +
Sbjct: 137 --GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHD 193
Query: 308 STEVFGLFDRICLLSNGNTLFFGETLACLQHF-SN---AGFPCPIMQSPSDHFL 357
E L D+I +L G G+ L L H+ +N AGF + SP +FL
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLE-LYHYPANRFVAGF----IGSPKMNFL 242
|
Length = 369 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 19/195 (9%)
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP-YG----SYGFVERETTLIGS 196
GP +GK+T I G + + G++ ++G +++P + G++ +E ++
Sbjct: 33 GPNGAGKTTTFYMIVGLVKPDS---GKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89
Query: 197 LTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
LTV E + A+L++ G +R+ +E+ + ++ L GERRR
Sbjct: 90 LTVEENI--LAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK----AS--SLSGGERRR 141
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315
V IAR L P L +DEP +D ++ + +K L G +L T + + E +
Sbjct: 142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLIT-DHNVRETLSIT 200
Query: 316 DRICLLSNGNTLFFG 330
DR ++ G L G
Sbjct: 201 DRAYIIYEGKVLAEG 215
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 4e-11
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 118 KRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-- 174
+ Y DKVV + + + G ++GP +GKST+ R + G + G++ V G
Sbjct: 11 SKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVLGEP 67
Query: 175 --AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
+++ + + G V + L TVRE LL +F +E I SL
Sbjct: 68 VPSRARLARVAIGVVPQFDNLDPEFTVRE-----NLLVFGRYFGMSTREIEAVIP--SLL 120
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
++A + L G +RR+ +AR L+ P +L +DEP LD + L+ L+
Sbjct: 121 EFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS 180
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
L + G T+L T E L DR+C+L +G
Sbjct: 181 LLARGKTILLT-THFMEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 6e-11
Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 40/228 (17%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++++ + K ++ + G + + G +GK+TL + +AG + S+ G
Sbjct: 3 ENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---G 55
Query: 169 EVFVNG--AKSEMPYGSYGFVERETTL-IGSLTVREYLYYSALLQLPGFFCQRKNVVEDA 225
+ +NG K++ S G+V ++ + + +VRE L L +L E
Sbjct: 56 SILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG-LKELDA----GNEQAETV 110
Query: 226 IHAMSLSDYANK----LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP-----LY 276
+ + L + L G G+++R+ IA L+ +L DEP
Sbjct: 111 LKDLDLYALKERHPLSLSG----------GQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160
Query: 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
+++ V L +++LA+ G + I + + DR+ LL+NG
Sbjct: 161 NMERVGEL-----IRELAAQG-KAVIVITHDYEFLAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 8e-11
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 24/178 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKSEMPY--GSYGF 186
G + GP+ +GKSTLL+ I G + G++ VNG E+P+ G
Sbjct: 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGV 83
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQR---KNVVEDAIHAMSLSDYANKLIGGHC 243
V ++ L+ TV E + L++ G + V + + + L A
Sbjct: 84 VFQDFRLLPDRTVYENVALP--LRVIGK--PPREIRRRVSEVLDLVGLKHKA------RA 133
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
L GE++RV IAR +V +P VL DEP +LD + +M +++ G T+L
Sbjct: 134 LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVL 191
|
Length = 223 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 9e-11
Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 40/261 (15%)
Query: 86 LPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPA 145
L P E K S+ +++++ + GK+ V+K + PG I+GP+
Sbjct: 309 LDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKK----PVLKDISFSIEPGEKVAIVGPS 364
Query: 146 KSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVERETTLIGSLTVR 200
SGKSTL++ + ++ GE+ ++G ++ S G V ++ L S T+R
Sbjct: 365 GSGKSTLIKLLLRLYDPTS---GEILIDGIDIRDISLDSLRKRIGIVSQDPLLF-SGTIR 420
Query: 201 EYLYYSALLQLPGFFCQRKNVVEDAIHA-----------MSLSDYANKLIGGHCYMKGLP 249
E + R + ++ I +L D + ++G L
Sbjct: 421 ENIALG-----------RPDATDEEIEEALKLANAHEFIANLPDGYDTIVGER--GVNLS 467
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309
G+R+R+ IAR L+ P +L +DE LD+ + L+ LKKL TL+ S+
Sbjct: 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTI 527
Query: 310 EVFGLFDRICLLSNGNTLFFG 330
+ DRI +L NG + G
Sbjct: 528 K---NADRIIVLDNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 54/215 (25%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG I+G + SGKSTLL+ + G G + ++G + I
Sbjct: 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLDG--------------VDLNDI 540
Query: 195 GSLTVREYLYYSALLQLPGFFCQ--RKNV--------VEDAIHAMSLSDYANKLIGGHCY 244
++R + Y +LQ P F R+N+ E+ I A +L G H +
Sbjct: 541 DLASLRRQVGY--VLQDPFLFSGSIRENIALGNPEATDEEIIEAA-------QLAGAHEF 591
Query: 245 MKGLPC---------------GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
++ LP G+R+R+ +AR L+ +P +L +DE LD + +++
Sbjct: 592 IENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 290 LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
L ++ G T++ ++ ST DRI +L G
Sbjct: 652 LLQIL-QGRTVIIIAHRLST--IRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 18/185 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG +I G + +GK++LLRA+AG P +G + MP S + +
Sbjct: 418 PGERLLITGESGAGKTSLLRALAGLWP-----WGS-----GRISMPADSALLFLPQRPYL 467
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
T+RE L Y + +H + L D A +L + + L GE++
Sbjct: 468 PQGTLREALCYPNAAPDFS-----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQ 522
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314
R+ AR L+ +P +F+DE LD + + LK+ T++ ++ + F
Sbjct: 523 RLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGHRPTLWNF-- 579
Query: 315 FDRIC 319
R
Sbjct: 580 HSRQL 584
|
Length = 604 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + V++GP+ GK+TLL IAG +P+ G + ++G E P G V + L+
Sbjct: 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAERGVVFQNEGLL 82
Query: 195 GSLTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253
V++ + + LQL G QR + + + L Y+ L G+R
Sbjct: 83 PWRNVQDNVAFG--LQLAGVEKMQRLEIAHQMLKKVGLEGA------EKRYIWQLSGGQR 134
Query: 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
+RV IAR L P +L +DEP LD+ + M L KL
Sbjct: 135 QRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL 174
|
Length = 255 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMY--GEVFVNGAKSEMPYGSYGFVERET 191
G I+GP+ +GKSTLL IAG L P S + G+ S P S F +E
Sbjct: 24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV-SMLF--QEN 80
Query: 192 TLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
L LTV + + L PG ++ + M + D +L G L
Sbjct: 81 NLFSHLTVAQNI---GLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG------QLS 131
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLD 279
G+R+RV +AR LV +L +DEP LD
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 69/235 (29%), Positives = 100/235 (42%), Gaps = 19/235 (8%)
Query: 95 AAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLL 153
A A S V DL K Y DK V + + + G ++GP +GKST+
Sbjct: 28 EAKASIPGSMSTVAIDLAGVSKS---YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIA 84
Query: 154 RAIAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209
R I G A G++ V G A++ + G V + L TVRE LL
Sbjct: 85 RMILGMTSPDA---GKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRE-----NLL 136
Query: 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL 269
+F +E I SL ++A + L G +RR+ +AR L+ P +L
Sbjct: 137 VFGRYFGMSTREIEAVIP--SLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLL 194
Query: 270 FIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
+DEP LD + L+ L+ L + G T+L T E L DR+C+L G
Sbjct: 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLT-THFMEEAERLCDRLCVLEAG 248
|
Length = 340 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 3e-10
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 23/201 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGS--YG--FVE 188
PG + ++G +GKSTL++ ++G P + GE+ ++G P + G V
Sbjct: 33 PGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPRDALAAGIATVH 89
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDA---IHAMSLSDYANKLIGGHCYM 245
+E +L+ +L+V E ++ RK + A + + L + L+G
Sbjct: 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD---- 145
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS--VSALLMMVTLKKLASTGCTLLFT 303
L +R+ V IAR L VL +DEP L L ++ ++L + G +++
Sbjct: 146 --LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI--RRLKAQGVAIIY- 200
Query: 304 INQSSTEVFGLFDRICLLSNG 324
I+ EVF + DRI +L +G
Sbjct: 201 ISHRLDEVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 30/214 (14%)
Query: 131 GYALPGT-MTVIMGPAKSGKSTLLRAIAG-RLPHSARMY--GEVFVNGAKSEM--PYG-S 183
+ LP +T + GP+ SGK++L+ IAG P R+ G V V+ K P
Sbjct: 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRR 77
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-----LSDYANKL 238
G+V ++ L TVR L Y + F D + A+ L Y L
Sbjct: 78 IGYVFQDARLFPHYTVRGNLRYGMWKSMRAQF--------DQLVALLGIEHLLDRYPGTL 129
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC 298
GG E++RV I R L+ P +L +DEPL LD ++ L++L
Sbjct: 130 SGG----------EKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN 179
Query: 299 TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ ++ S EV L DR+ +L NG G
Sbjct: 180 IPILYVSHSLDEVLRLADRVVVLENGKVKASGPL 213
|
Length = 352 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 45/204 (22%)
Query: 141 IMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK-SEMP---------YGSYGFVER 189
++GP+ GK+T+LR IAG P S G + ++G + +P + SY
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPDS----GRIMLDGQDITHVPAENRHVNTVFQSYA---- 96
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQR------KNVVEDAIHAMSLSDYANKLIGGHC 243
L +TV E + + G Q+ V +A+ + L ++A +
Sbjct: 97 ---LFPHMTVFENVAF-------GLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP---- 142
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLF 302
L G+++RV IAR +V +P VL +DE L LD M LK L G T +F
Sbjct: 143 --HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF 200
Query: 303 -TINQSSTEVFGLFDRICLLSNGN 325
T +Q E + DRI ++ +G
Sbjct: 201 VTHDQE--EALTMSDRIVVMRDGR 222
|
Length = 375 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 37/223 (16%)
Query: 121 YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKS 177
Y K + + +LP G +T ++GP GKSTLL+ A RL P S G VF+
Sbjct: 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQS----GTVFLGDK-- 64
Query: 178 EMPYGSYG---------FVERETTLIGSLTVREYLYY--SALLQLPGFFCQR-KNVVEDA 225
P + + +TVRE + Y S L L G V A
Sbjct: 65 --PISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA 122
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD---SVS 282
+ ++ A++ + L G+R+R +A L V+ +DEP +LD V
Sbjct: 123 MEQTRINHLADRRL------TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVE 176
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+ +M L T T+L +NQ+S D + +L+NG+
Sbjct: 177 LMRLMRELNTQGKTVVTVLHDLNQASRYC----DHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 60/246 (24%), Positives = 99/246 (40%), Gaps = 36/246 (14%)
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
L K R S + V+ + G + +G +GKST L+ + G L ++ G+V
Sbjct: 26 LNHFFHRKER-SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKV 81
Query: 171 FVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS 230
VNG + P+ R L+ + + L++ LP V I+ +
Sbjct: 82 RVNG---KDPFRRREEYLRSIGLV--MGQKLQLWWD----LP---ALDSLEVLKLIYEIP 129
Query: 231 LSDYANKL--------IGGHCY--MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
++A +L + G ++ L G+R R +A L+ P VLF+DEP LD
Sbjct: 130 DDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189
Query: 281 VSALLMMVTLKKLAST-GCTLLFTINQSSTEVFG----LFDRICLLSNGNTLFFGETLAC 335
+ + LK+ T+L T T +F L DR+ L+ G +F G
Sbjct: 190 NAQANIREFLKEYNEERQATVLLT-----THIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244
Query: 336 LQHFSN 341
+ F
Sbjct: 245 QEQFGP 250
|
Length = 325 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 5e-10
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS--YGFVERET 191
G + +MGP+ GKSTLL + G L GE+++N + +M P G + ++
Sbjct: 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDA 86
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
L L+V + L ++ L G R+N A+ L H L G
Sbjct: 87 LLFPHLSVGQNLLFALPATLKGN--ARRNAANAALERSGLDGAF------HQDPATLSGG 138
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLD 279
+R RV + R L+ +P L +DEP LD
Sbjct: 139 QRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 6e-10
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 25/236 (10%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARM 166
DL+V K K + S + P +T ++GP+ SGKSTLLR+I L +
Sbjct: 9 SDLSVYYNKK-----KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63
Query: 167 YGEVFVNGAKSEMPYGSYGFVERETTLIGS------LTVREYLYYSALLQLPGFFCQRK- 219
G + NG P + +E ++ +++ E + Y L+L G ++
Sbjct: 64 TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG--LRLKGIKDKQVL 121
Query: 220 -NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
VE ++ S+ D + H GL G+++RV IAR L P ++ +DEP L
Sbjct: 122 DEAVEKSLKGASIWDEVKDRL--HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
Query: 279 DSVSALLMMVTLKKLASTGCTLLFT--INQSSTEVFGLFDRICLLSNGNTLFFGET 332
D +SA + TL L LL T + Q+S + DR +G+ + + +T
Sbjct: 180 DPISAGKIEETLLGLKDDYTMLLVTRSMQQASR----ISDRTGFFLDGDLIEYNDT 231
|
Length = 252 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 6e-10
Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 29/240 (12%)
Query: 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
G ++ ++++ T G+ K +K+ N G I+G + SGKSTLL+ +AG
Sbjct: 333 TGQALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD 389
Query: 162 HSARMYGEVFVNGAKSEMPYGSYGFVERETTL---IGSLTVREYLYYSALLQLPGFFCQR 218
G + +NG + S E L I LT R +L+ L
Sbjct: 390 PQQ---GSITLNG----VEIASL----DEQALRETISVLTQRVHLFSGTLRDNLRLANPD 438
Query: 219 KNVVE--DAIHAMSLSDYANKLIGG-HCYM----KGLPCGERRRVRIARELVMRPHVLFI 271
+ E A+ + L G + ++ + L GERRR+ +AR L+ + +
Sbjct: 439 ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL 498
Query: 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFFG 330
DEP LD ++ ++ L + A G TLL T E DRI +L NG + G
Sbjct: 499 DEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLER---MDRIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 7e-10
Identities = 54/211 (25%), Positives = 83/211 (39%), Gaps = 31/211 (14%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K+L+V+ K + + G ++G + SGKSTL RAI G G
Sbjct: 5 KNLSVSFPTGGGSV-KALDDVSFSIKKGETLGLVGESGSGKSTLARAILG---LLKPTSG 60
Query: 169 EVFVNG-AKSEMPYGSYGFVERETTLI-----GSL----TVREYLYYSALLQLPGF-FCQ 217
+ +G ++ +E ++ SL T+ E + +
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 218 RKNVVEDAIHAMSLSD-----YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272
RK V + + L + Y ++L GG +R+RV IAR L + P +L D
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGG----------QRQRVAIARALALNPKLLIAD 170
Query: 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLF 302
EP LD ++ LKKL G TLLF
Sbjct: 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLF 201
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 7e-10
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 30/176 (17%)
Query: 117 GKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175
G RR D V + + PG ++GP +GKSTL ++ RL + G++ V G
Sbjct: 12 GARRALDDV-----SFTVRPGRFVALLGPNGAGKSTLF-SLLTRLYVAQE--GQISVAGH 63
Query: 176 --KSEMP--YGSYGFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMS 230
+ G V ++ TL L+VR+ L Y++AL L + + + + + +
Sbjct: 64 DLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSR--AEARARIAELLARLG 121
Query: 231 LSDYAN----KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
L++ A+ +L GGH RRRV IAR L+ RP +L +DEP LD S
Sbjct: 122 LAERADDKVRELNGGH----------RRRVEIARALLHRPALLLLDEPTVGLDPAS 167
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 8e-10
Identities = 50/159 (31%), Positives = 70/159 (44%), Gaps = 21/159 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG---------AKSEMPYGSY 184
G I+GP+ SGKSTLL +AG P S GEV + G A++ +
Sbjct: 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSS----GEVRLLGQPLHKLDEDARAALRARHV 90
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244
GFV + LI +LT E + L+ + + + A+ L H Y
Sbjct: 91 GFVFQSFHLIPNLTALENVALPLELRGESS-ADSRAGAKALLEAVGLGKRLT-----H-Y 143
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
L GE++RV +AR RP VLF DEP +LD +
Sbjct: 144 PAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG 182
|
Length = 228 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS--YGFVERETT 192
G ++GP+ GK+TLLR IAG +A G ++ G + +P YG V +
Sbjct: 30 GEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGGRDITRLPPQKRDYGIVFQSYA 86
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG----GHCYMKGL 248
L +LTV + + Y G + E A L D L+G Y L
Sbjct: 87 LFPNLTVADNIAY-------GLKNRGMGRAEVAERVAELLD----LVGLPGSERKYPGQL 135
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDS-VSALL---MMVTLKKLASTGCTLLFTI 304
G+++RV +AR L P +L +DEPL LD+ V L + ++L T T++ T
Sbjct: 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT--TIMVTH 193
Query: 305 NQSSTEVFGLFDRICLLSNG 324
+Q E + DRI ++++G
Sbjct: 194 DQE--EALSMADRIVVMNHG 211
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 45/191 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG I+GP+ SGKSTL R I G L ++ G V ++GA + +
Sbjct: 27 PGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGA--------------DISQW 69
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
+ +++ Y L Q +D + + S+++ N L G G+R+
Sbjct: 70 DPNELGDHVGY--LPQ------------DDELFSGSIAE--NILSG----------GQRQ 103
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314
R+ +AR L P +L +DEP HLD + + L + G T + ++ T
Sbjct: 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET--LAS 161
Query: 315 FDRICLLSNGN 325
DRI +L +G
Sbjct: 162 ADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 26/201 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEM--PY---GSYGFVE 188
G I+G SGKSTLL+ +AG P S G V ++G P + G+V
Sbjct: 29 AGEKVAIIGRVGSGKSTLLKLLAGLYKPTS----GSVLLDGTDIRQLDPADLRRNIGYVP 84
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM--- 245
++ TL T+R+ + A L + A ++D+ NK G
Sbjct: 85 QDVTLF-YGTLRDNITLGAPLA-------DDERILRAAELAGVTDFVNKHPNGLDLQIGE 136
Query: 246 --KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+GL G+R+ V +AR L+ P +L +DEP +D S + L++L ++ T
Sbjct: 137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIIT 196
Query: 304 INQSSTEVFGLFDRICLLSNG 324
S + L DRI ++ +G
Sbjct: 197 HRPS---LLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 34/222 (15%)
Query: 119 RRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--- 174
+ Y KVV +P G +T I+GP +GKSTLL ++ L + GE+ ++G
Sbjct: 9 KSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLEL 65
Query: 175 --AKSEMPYGSYGFVERETTLIGSLTVRE------YLYYSALLQLPGFFCQRKNVVEDAI 226
S+ +++E + LTVR+ + Y L + + ++ +AI
Sbjct: 66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTK-----EDRRIINEAI 120
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+ L D +++ Y+ L G+R+R IA L + +DEPL +LD ++ +
Sbjct: 121 EYLHLEDLSDR------YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQI 174
Query: 287 MVTLKKLAS----TGCTLLFTINQSSTEVFGLFDRICLLSNG 324
M L++LA T +L IN +S D I L NG
Sbjct: 175 MKILRRLADELGKTIVVVLHDINFASCYS----DHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 63/210 (30%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
G + +++++T+ R G ++G +GKSTLL+ +AG
Sbjct: 10 SLAYGDRPLLENVSLTLNPGERI--------------G----LVGRNGAGKSTLLKILAG 51
Query: 159 RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
L + GEV G++ +E L TV +Y+ + GF R
Sbjct: 52 ELEPDS---GEVTRPKGLRV------GYLSQEPPLDPEKTVLDYV-------IEGFGELR 95
Query: 219 KNVVEDAIHAMSLSDYANKL----------IGGHCY-------MKGLPC----------- 250
+ + E L+D ++L + G + GL
Sbjct: 96 ELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLS 155
Query: 251 -GERRRVRIARELVMRPHVLFIDEPLYHLD 279
G RRRV +AR L+ P +L +DEP HLD
Sbjct: 156 GGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 2e-09
Identities = 55/235 (23%), Positives = 109/235 (46%), Gaps = 25/235 (10%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
A++ K+L KG+R D + ++G + ++GP +GK+T + G +P
Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSG-----EIVGLLGPNGAGKTTTFYMVVGIVPRD 56
Query: 164 ARMYGEVFVNGAK-SEMPYGS-----YGFVERETTLIGSLTVREYLYYSALLQLPGFFC- 216
A G + ++ S +P + G++ +E ++ L+V + L A+LQ+
Sbjct: 57 A---GNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSA 111
Query: 217 -QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275
QR++ + + + + + + L GERRRV IAR L P + +DEP
Sbjct: 112 EQREDRANELMEEFHIEHLRDSM------GQSLSGGERRRVEIARALAANPKFILLDEPF 165
Query: 276 YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+D +S + + ++ L +G +L T + + E + +R ++S G+ + G
Sbjct: 166 AGVDPISVIDIKRIIEHLRDSGLGVLIT-DHNVRETLAVCERAYIVSQGHLIAHG 219
|
Length = 241 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-09
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 32/205 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG---------AKSEMPYGSY 184
G + I+G + SGKSTLL + G P S GEV NG ++++
Sbjct: 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTS----GEVLFNGQSLSKLSSNERAKLRNKKL 85
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSDYANKLIGGH 242
GF+ + L+ T E + L+ G + K + + + L N
Sbjct: 86 GFIYQFHHLLPDFTALENVAMPLLI---GKKSVKEAKERAYEMLEKVGLEHRINH----- 137
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKKLASTGCT 299
L GER+RV IAR LV +P ++ DEP +LD+ +A + +M+ L + +T
Sbjct: 138 -RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS-- 194
Query: 300 LLFTINQSSTEVFGLFDRICLLSNG 324
F + E+ DR+ + +G
Sbjct: 195 --FLVVTHDLELAKKLDRVLEMKDG 217
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 38/208 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVE--RET 191
G + I+G + +GKSTLLR I P S G VFV+G + + ++
Sbjct: 31 KGEIFGIIGYSGAGKSTLLRLINLLERPTS----GSVFVDG-QDLTALSEAELRQLRQKI 85
Query: 192 TLI-------GSLTVREYLYYSALLQLPGFF---CQRKNVVEDAIHAMSLSDYANKLIGG 241
+I S TV E + + L+L G +++ V + + + LSD A++
Sbjct: 86 GMIFQHFNLLSSRTVFENVAFP--LELAGVPKAEIKQR--VAELLELVGLSDKADR---- 137
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-----SVSALLMMVTLKKLAST 296
Y L G+++RV IAR L P +L DE LD S+ LL + ++L
Sbjct: 138 --YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDIN-REL--- 191
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNG 324
G T++ I V + DR+ +L G
Sbjct: 192 GLTIVL-ITHEMEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 35/199 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS----------YG 185
G M I+G + SGKSTLL I + G+V++NG + P S G
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNG-QETPPLNSKKASKFRREKLG 79
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVE------DAIHAMSLSDYANKLI 239
++ + LI + TV E L L L ++ + E +A+ + L+ + I
Sbjct: 80 YLFQNFALIENETVEENL----DLGLKY---KKLSKKEKREKKKEALEKVGLNLKLKQKI 132
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
Y L GE++RV +AR ++ P ++ DEP LD + ++ L +L G T
Sbjct: 133 ----YE--LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKT 186
Query: 300 LLFTINQSSTEVFGLFDRI 318
++ I EV DR+
Sbjct: 187 II--IVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 42/210 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG-------------AKSEMP 180
G + I+G + +GKSTL+R I G P S G V V+G A+ +
Sbjct: 30 KGEIFGIIGRSGAGKSTLIRCINGLERPTS----GSVLVDGTDLTLLSGKELRKARRRI- 84
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLI 239
G + + L+ S TV E + L++ G + + V + + + L D A+
Sbjct: 85 ----GMIFQHFNLLSSRTVFENVALP--LEIAGVPKAEIEERVLELLELVGLEDKADA-- 136
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-----SVSALLMMVTLKKLA 294
Y L G+++RV IAR L P VL DE LD S+ ALL + ++L
Sbjct: 137 ----YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDIN-REL- 190
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNG 324
G T++ ++ V + DR+ ++ G
Sbjct: 191 --GLTIVLITHEMEV-VKRICDRVAVMEKG 217
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 40/234 (17%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAG-RLPHS 163
VV K++T +R+ V + + GTM ++GP+ GK+T+LR +AG P
Sbjct: 7 VVLKNIT------KRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE 60
Query: 164 ARMYGEVFVNG---AKSE-------MPYGSYGFVERETTLIGSLTVREYLYYS-ALLQLP 212
G++F++G M + SY L +++ E + Y +L +P
Sbjct: 61 ----GQIFIDGEDVTHRSIQQRDICMVFQSYA-------LFPHMSLGENVGYGLKMLGVP 109
Query: 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272
+RK V++A+ + L+ + ++ Y+ + G+++RV +AR L+++P VL D
Sbjct: 110 K--EERKQRVKEALELVDLAGFEDR------YVDQISGGQQQRVALARALILKPKVLLFD 161
Query: 273 EPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
EPL +LD+ M +++L T L+ + +E F + D + +++ G
Sbjct: 162 EPLSNLDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKGK 214
|
Length = 351 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 39/196 (19%)
Query: 98 ARKIAGASVVW-KDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL 152
K G V+ ++++ G R S ++ G I+GP +GKSTL
Sbjct: 313 PGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRID--------RGDRIAIVGPNGAGKSTL 364
Query: 153 LRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET-TLIGSLTVREYLYYSALLQL 211
L+ +AG L + G V G ++ G+ ++ L TV E L
Sbjct: 365 LKLLAGELGPLS---GTV-KVGETVKI-----GYFDQHRDELDPDKTVLEEL-------S 408
Query: 212 PGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270
GF + V + + + K + L GE+ R+ +A+ L+ P++L
Sbjct: 409 EGFPDGDEQEVRAYLGRFGFTGEDQEKPV------GVLSGGEKARLLLAKLLLQPPNLLL 462
Query: 271 IDEPLYHLD--SVSAL 284
+DEP HLD S+ AL
Sbjct: 463 LDEPTNHLDIESLEAL 478
|
Length = 530 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 7e-09
Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 33/185 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY-----GFVER 189
PG I+GP+ SGKSTLL +AG L GEV ++G +
Sbjct: 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQ---GEVTLDGVPVSSLDQDEVRRRVSVCAQ 416
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-----------SLSDYANKL 238
+ L + TVRE L + R + ++ + A +L D + +
Sbjct: 417 DAHLFDT-TVRENLRLA-----------RPDATDEELWAALERVGLADWLRALPDGLDTV 464
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC 298
+G L GER+R+ +AR L+ +L +DEP HLD+ +A ++ L S
Sbjct: 465 LGEGG--ARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRT 522
Query: 299 TLLFT 303
+L T
Sbjct: 523 VVLIT 527
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 36/155 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----------AKSEMPYGS 183
G +T ++G GK+TLL+ + G LP + G + ++G A++ + Y
Sbjct: 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHERARAGIAYVP 81
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ--RKNVVEDAIHAM--SLSDYANKLI 239
G RE + LTV E L L G R + D I+ + L + +
Sbjct: 82 QG---RE--IFPRLTVEENL-------LTGLAALPRRSRKIPDEIYELFPVLKEMLGRR- 128
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
GG L G+++++ IAR LV RP +L +DEP
Sbjct: 129 GGD-----LSGGQQQQLAIARALVTRPKLLLLDEP 158
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS 183
V+K N PG I+GP +GK+TL+ + G++ ++G ++ S
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDGIDIRDISRKS 74
Query: 184 Y----GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLI 239
G V ++T L S T+ E + V +A D+ KL
Sbjct: 75 LRSMIGVVLQDTFLF-SGTIMENIRLGRPNA-------TDEEVIEAAKEAGAHDFIMKLP 126
Query: 240 GGHCYM-----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
G+ + L GER+ + IAR ++ P +L +DE ++D+ + L+ L+KL
Sbjct: 127 NGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL- 185
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNG 324
G T + ++ ST D+I +L +G
Sbjct: 186 MKGRTSIIIAHRLSTIKNA--DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
KDL V ++GK+ +++K N G + IMGP SGKSTL I G P G
Sbjct: 7 KDLHVEVEGKK----EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTEG 61
Query: 169 EVFVNGAK-SEMPYGSYGFVER----------ETTLIGSLTVREYL--YYSALLQLPGFF 215
E+ +G E+ ER I +T ++L +A G
Sbjct: 62 EILFDGEDILELSPD-----ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGIL 116
Query: 216 CQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ +++ + L ++ + + +G GE++R I + L++ P + +DEP
Sbjct: 117 PEFIKELKEKAELLGLDEEFLERYVN-----EGFSGGEKKRNEILQLLLLEPKLAILDEP 171
Query: 275 LYHLDSVSALLMMV-TLKKLASTGCTLL 301
LD + AL ++ + L G +L
Sbjct: 172 DSGLD-IDALKIVAEGINALREEGRGVL 198
|
Length = 251 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 50/213 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G ++GP+ SGKSTL+ I R Y G + ++G + S G
Sbjct: 27 AGETVALVGPSGSGKSTLVNLIP-------RFYDVDSGRILIDGHDVRDYTLASLRRQIG 79
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV----VEDAIHAMSLSDYANKLIGG 241
V ++ L + TV E + Y R VE+A A + ++ +L G
Sbjct: 80 LVSQDVFLF-NDTVAENIAYG-----------RPGATREEVEEAARAANAHEFIMELPEG 127
Query: 242 HCYMKG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296
+ + G L G+R+R+ IAR L+ P +L +DE LD+ S L+ L++L
Sbjct: 128 YDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKN 187
Query: 297 GCTL-----LFTINQSSTEVFGLFDRICLLSNG 324
T L TI + DRI +L +G
Sbjct: 188 RTTFVIAHRLSTIENA--------DRIVVLEDG 212
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 2e-08
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 121 YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179
Y V + +P G T I+GP GKSTLLR ++ RL A +G V+++G +
Sbjct: 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPA--HGHVWLDGEHIQH 73
Query: 180 PYGS------YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK---NVVEDAIHAMS 230
Y S G + + T G +TV+E + P F RK V A+ A
Sbjct: 74 -YASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG 132
Query: 231 LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
++ A++ + L G+R+R IA L ++ +DEP LD + ++ L
Sbjct: 133 ITHLADQSV------DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL 186
Query: 291 KKLAST-GCTL---LFTINQS 307
+L G TL L +NQ+
Sbjct: 187 SELNREKGYTLAAVLHDLNQA 207
|
Length = 265 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 32/163 (19%)
Query: 141 IMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI---- 194
+MGP+ GKSTLLR L AR+ GEV + G P V RE ++
Sbjct: 35 LMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94
Query: 195 ---GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-----------LSDYANKLIG 240
LT+ + + ++L G +K + E A+ L+DY + L G
Sbjct: 95 NPFPHLTIYDNVAIG--VKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
G +R+R+ IAR L M+P +L +DEP ++D V
Sbjct: 153 G----------QRQRLVIARALAMKPKILLMDEPTANIDPVGT 185
|
Length = 253 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 37/223 (16%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET-- 191
G I+GP+ SGKSTL R I G P ++ G V ++GA +RET
Sbjct: 342 QAGEALAIIGPSGSGKSTLARLIVGIWPPTS---GSVRLDGA-------DLKQWDRETFG 391
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP-- 249
IG L L+ + + F +N + I A KL G H + LP
Sbjct: 392 KHIGYLPQDVELFPGTVAENIARF--GENADPEKIIE------AAKLAGVHELILRLPDG 443
Query: 250 -------------CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296
G+R+R+ +AR L P ++ +DEP +LD + +K L +
Sbjct: 444 YDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR 503
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339
G T++ ++ S + G D+I +L +G FGE L
Sbjct: 504 GITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 40/194 (20%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
KDL V++ GK ++K N G + +MGP SGKSTL + I G P G
Sbjct: 4 KDLHVSVGGKE-----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-PKYEVTEG 57
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
E+ G I L E A L G F + E I
Sbjct: 58 EILFKG-----------------EDITDLPPEE----RARL---GIFLAFQYPPE--IPG 91
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288
+ +D+ + +G GE++R I + L++ P + +DEP LD + AL ++
Sbjct: 92 VKNADFLRYV------NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD-IDALRLVA 144
Query: 289 -TLKKLASTGCTLL 301
+ KL G ++L
Sbjct: 145 EVINKLREEGKSVL 158
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 28/187 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPY----GSYGFVER 189
PG ++G + SGKST+ + +AG + GE+ +G + E+P S V++
Sbjct: 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDGIPREEIPREVLANSVAMVDQ 560
Query: 190 ETTLIGSLTVREYLYY-------SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242
+ L TVR+ L + L++ + + D I + Y +L G
Sbjct: 561 DIFLFEG-TVRDNLTLWDPTIPDADLVR-----ACKDAAIHDVITSRP-GGYDAELAEGG 613
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
+ G G+R+R+ IAR LV P +L +DE LD + ++ L++ GCT +
Sbjct: 614 ANLSG---GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCII 667
Query: 303 TINQSST 309
++ ST
Sbjct: 668 VAHRLST 674
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 5e-08
Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 20/175 (11%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SEMPYG--------SY 184
G V++GP+ +GKS+LLR + L R G + + G S+ P +
Sbjct: 28 GETLVLLGPSGAGKSSLLRVL--NLLEMPRS-GTLNIAGNHFDFSKTPSDKAIRDLRRNV 84
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244
G V ++ L LTV+E L + L Q E + + L YA++ Y
Sbjct: 85 GMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADR------Y 138
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
L G+++RV IAR L+M P VL DEP LD ++ +K+LA TG T
Sbjct: 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGIT 193
|
Length = 242 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 5e-08
Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 31/247 (12%)
Query: 109 KDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
++L+ T + + RR + + VK + G I+G SGKSTL + +AG + ++
Sbjct: 8 RNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS 67
Query: 165 RMYGEVFVNGAKSEMPYGSYGFVERETTLI-----GSLTVREYLYYSALLQLPGFFC--- 216
GE+ +N + +G Y F + +I SL R L +L P
Sbjct: 68 ---GEILIND--HPLHFGDYSFRSKRIRMIFQDPNTSLNPR--LRIGQILDFPLRLNTDL 120
Query: 217 ---QRKNVVEDAIHAMSL-SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272
QR+ + + + + L D+AN Y L G+++RV +AR L++RP ++ D
Sbjct: 121 EPEQRRKQIFETLRMVGLLPDHAN------YYPHMLAPGQKQRVALARALILRPKIIIAD 174
Query: 273 EPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
E L LD S+ + L+ + L+ G + ++ + Q + + D++ ++ G + G
Sbjct: 175 EALASLDMSMRSQLINLMLELQEKQGISYIY-VTQHIGMIKHISDQVLVMHEGEVVERGS 233
Query: 332 TLACLQH 338
T L
Sbjct: 234 TADVLAS 240
|
Length = 267 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 39/208 (18%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-------AKSEMPYGSYGFVE 188
G M ++GP+ SGK+TLLR IAG ++ G + +G A+ GFV
Sbjct: 28 GQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHGTDVSRLHARDR----KVGFVF 80
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA--------MSLSDYANKLIG 240
+ L +TV + + + L LP +R+ AI A + L+ A++
Sbjct: 81 QHYALFRHMTVFDNIAF-GLTVLP----RRERPNAAAIKAKVTQLLEMVQLAHLADR--- 132
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Y L G+++RV +AR L + P +L +DEP LD+ + L++L L
Sbjct: 133 ---YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE---EL 186
Query: 301 LFT---INQSSTEVFGLFDRICLLSNGN 325
FT + E + DR+ ++S GN
Sbjct: 187 KFTSVFVTHDQEEAMEVADRVVVMSQGN 214
|
Length = 353 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 8e-08
Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 24/210 (11%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
L V KR +V+K + A G + I+G + SGKST LR I S G
Sbjct: 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---G 60
Query: 169 EVFVNGAKSEMPYGSYG----FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED 224
+ VNG + G + + L+ + + +++ L +NV+E
Sbjct: 61 SIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN----LWSHMTVLENVMEA 116
Query: 225 AIHAMSLSD---------YANKL-IGGHC---YMKGLPCGERRRVRIARELVMRPHVLFI 271
I + LS Y K+ I Y L G+++RV IAR L M P VL
Sbjct: 117 PIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176
Query: 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
DEP LD ++ +++LA G T++
Sbjct: 177 DEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
|
Length = 257 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 8e-08
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 16/212 (7%)
Query: 118 KRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---RMYGEVFVN 173
++RY DK+V + + G ++GP +GK+T LR + G A + GE +
Sbjct: 14 EKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS 73
Query: 174 GAKSEMPYGSYGFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
A+ G V + L TVRE L + L + V + L
Sbjct: 74 RAR--HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL--VPPLLEFAKLE 129
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
+ A+ +G L G +RR+ +AR LV P VL +DEP LD + LM L+
Sbjct: 130 NKADAKVGE------LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS 183
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
L + G T+L T E L DR+C++ G
Sbjct: 184 LLARGKTILLT-THFMEEAERLCDRLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 35/210 (16%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY---------GF 186
G + I+GP+ +GKSTL++ I RL G + ++G + G
Sbjct: 29 GAIYTIVGPSGAGKSTLIKLI-NRLIDPT--EGSILIDGVD----IKTIDVIDLRRKIGM 81
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV-VEDAIHAMSLS-DYANKLIGGHCY 244
V ++ L TV++ + Y +L+ KNV VE + + L+ +YA + +
Sbjct: 82 VFQQPHLFEG-TVKDNIEYGPMLK------GEKNVDVEYYLSIVGLNKEYATRDV----- 129
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLF- 302
K L GE +RV IAR L P VL +DEP LD S ++ + KL + T+++
Sbjct: 130 -KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI 188
Query: 303 TINQSSTEVFGLFDRICLLSNGNTLFFGET 332
T N + G D L+ G + + +T
Sbjct: 189 THNMEQAKRIG--DYTAFLNKGILVEYAKT 216
|
Length = 241 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 119 RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178
RR + + VK + G I+G SGKSTL + +AG + ++ GE+ ++
Sbjct: 22 RRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDDHP-- 76
Query: 179 MPYGSYGFVERETTLI-----GSLTVREYLYYSALLQLPGFF-------CQRKNVVEDAI 226
+ +G Y + + +I SL R+ + S +L P + K ++E
Sbjct: 77 LHFGDYSYRSQRIRMIFQDPSTSLNPRQRI--SQILDFPLRLNTDLEPEQREKQIIETLR 134
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
L D+A+ Y L G+++R+ +AR L++RP V+ DE L LD
Sbjct: 135 QVGLLPDHASY------YPHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 1e-07
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 121 YSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKS 177
Y DK VK+ N GT+ ++GP+ GK+T LRAI L AR+ G + ++G
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73
Query: 178 EMP-------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHA 228
P G V ++ +++V + + A L+L G + V E ++
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRG 131
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL--- 285
+L D + GL G+++R+ IAR L + P +L +DEP LD S
Sbjct: 132 AALWDEVKDRLKTPA--TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED 189
Query: 286 MMVTLKKLAS 295
+M LKK+ +
Sbjct: 190 LMTDLKKVTT 199
|
Length = 252 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGS-YGFVERE 190
G++ ++GP +GK+TLLRAI G L +A G V V G A S V ++
Sbjct: 29 GSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARAASRRVASVPQD 85
Query: 191 TTLIGSLTVR---EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
T+L VR E + + + VE A+ ++ +A++ +
Sbjct: 86 TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV------TS 139
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L GER+RV +AR L VL +DEP LD + + +++L G T + I+
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIH-- 197
Query: 308 STEVFGLF-DRICLLSNG 324
++ + D + LL++G
Sbjct: 198 DLDLAARYCDELVLLADG 215
|
Length = 402 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 2e-07
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 121 YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSE 178
Y D+ + + LP G + + G +GK+TLL+ IAG L P GE+ +
Sbjct: 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK----GEILFERQSIK 66
Query: 179 MPYGSYG----FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY 234
+Y FV + + LT+RE Y F + + SL
Sbjct: 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDI------HFSPGAVGITELCRLFSLEHL 120
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
+ G L G++R+V + R + + + +DEPL LD +S L ++ +++
Sbjct: 121 IDYPCGL------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174
Query: 295 STGCTLLFTINQ 306
+ G +L T +Q
Sbjct: 175 AKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 25/203 (12%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPH 162
+++ K+L G+ V+ + PG + I+GP+ SGK+TLLR I P
Sbjct: 2 SAIEVKNLVKKFHGQT-----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE 56
Query: 163 SARM-YGEVFVNGAKSEMPYGSY--------GFVERETTLIGSLTVREYLYYSALLQLPG 213
+ + G++ ++ A+S GFV + L TV E + + G
Sbjct: 57 AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENI-------IEG 109
Query: 214 FFCQRKNVVEDAIHAMSLSDYANKLIGGH--CYMKGLPCGERRRVRIARELVMRPHVLFI 271
+ E+A A + A + G Y + L G+++RV IAR L MRP V+
Sbjct: 110 PVIVKGEPKEEAT-ARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILF 168
Query: 272 DEPLYHLDSVSALLMMVTLKKLA 294
DEP LD ++ T+++LA
Sbjct: 169 DEPTSALDPELVGEVLNTIRQLA 191
|
Length = 250 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 33/205 (16%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK 176
KR +V+K + A G + I+G + SGKST LR I P + G + VNG +
Sbjct: 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA----GSIRVNGEE 69
Query: 177 SEMPYGSYG------------------FVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
+ G V + L +TV E + A + + G +
Sbjct: 70 IRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVI-EAPVHVLGV--SK 126
Query: 219 KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
+E A ++ A K ++ G G+++RV IAR L M P V+ DEP L
Sbjct: 127 AEAIERAEKYLAKVGIAEKADAYPAHLSG---GQQQRVAIARALAMEPEVMLFDEPTSAL 183
Query: 279 DS--VSALLMMVTLKKLASTGCTLL 301
D V +L ++ + LA G T++
Sbjct: 184 DPELVGEVLKVM--QDLAEEGRTMV 206
|
Length = 256 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 3e-07
Identities = 55/233 (23%), Positives = 91/233 (39%), Gaps = 50/233 (21%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+D + T + + +K N G + I+GP SGKS+LL A+ G L + G
Sbjct: 4 EDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---G 60
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV------ 222
V V GS +V +E + + T+RE N++
Sbjct: 61 SVSVP--------GSIAYVSQEPWIQ-NGTIRE------------------NILFGKPFD 93
Query: 223 ----EDAIHAMSLSDYANKLIGGHCYM---KG--LPCGERRRVRIARELVMRPHVLFIDE 273
E I A +L L G KG L G+++R+ +AR + + +D+
Sbjct: 94 EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDD 153
Query: 274 PLYHLDS-VSALLM-MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
PL +D+ V + L L + +L T ++ D+I +L NG
Sbjct: 154 PLSAVDAHVGRHIFENCILGLLLNNKTRILVT---HQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 28/225 (12%)
Query: 118 KRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGA 175
KR+Y + + + G + +GP +GK+T L+ ++G L P S GEV V G
Sbjct: 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS----GEVRVAG- 82
Query: 176 KSEMPYG-SYGFVER-------ETTLIGSLTVREYLYY-SALLQLPGFFCQRKNVVEDAI 226
+P+ F+ R +T L L V + Y +A+ LP + K +++
Sbjct: 83 --LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA--RFKKRLDELS 138
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+ L + + + + L G+R R IA L+ P +LF+DEP LD V+ +
Sbjct: 139 ELLDLEELLDTPV------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192
Query: 287 MVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
LK+ G T+L T + ++ L R+ ++ G L+ G
Sbjct: 193 RNFLKEYNRERGTTVLLT-SHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 5e-07
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMP-------YGSYGFVE 188
+T I+GP+ GKSTLLRA+ + AR+ G V ++ P G V
Sbjct: 32 ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVF 91
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMK 246
++ + +L G Q + VVE ++ +L D + H
Sbjct: 92 QQPNPFPKSIFDNVAFGPRML---GTTAQSRLDEVVEKSLRQAALWDEVKDNL--HKSGL 146
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
L G+++R+ IAR L + P V+ +DEP LD VS + + +++L
Sbjct: 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL 193
|
Length = 251 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 6e-07
Identities = 51/185 (27%), Positives = 71/185 (38%), Gaps = 47/185 (25%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
PG ++G +GKSTLLR +AG GE P G++ +E L
Sbjct: 31 FPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARP------APGIKVGYLPQEPQL 81
Query: 194 IGSLTVRE---------------YLYYSALLQLPGF----FCQRKNVVEDAIHAMSLSDY 234
TVRE + A P + +++ I A D
Sbjct: 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDL 141
Query: 235 ANKL-IGGHCYMKGLPC------------GERRRVRIARELVMRPHVLFIDEPLYHLD-- 279
++L I M L C GERRRV + R L+ +P +L +DEP HLD
Sbjct: 142 DSQLEIA----MDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197
Query: 280 SVSAL 284
SV+ L
Sbjct: 198 SVAWL 202
|
Length = 556 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 6e-07
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 38/185 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------AKSEMPYGSYG 185
G ++G + SGKSTLL +AG S+ GEV + G A++++ G
Sbjct: 35 RGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLVGQPLHQMDEEARAKLRAKHVG 91
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
FV + LI +L E + ALL+ ++ + A +L + +G +
Sbjct: 92 FVFQSFMLIPTLNALENVELPALLR-------GESSRQSRNGAKALL----EQLGLGKRL 140
Query: 246 KGLPC----GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
LP GE++RV +AR RP VLF DEP +LD T K+A LL
Sbjct: 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDR-------QTGDKIAD----LL 189
Query: 302 FTINQ 306
F++N+
Sbjct: 190 FSLNR 194
|
Length = 228 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 8e-07
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 20/207 (9%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
+T ++GP+ GKST LR+I L SAR GE+ G + + RE IG
Sbjct: 49 VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRRE---IG 105
Query: 196 SLTVREYLY----YSALLQLPGFFCQRKNVVEDAIHAMSLSDYA------NKLIGGHCYM 245
+ + + Y+ + + +R+ V D I SL+ A ++L H
Sbjct: 106 MVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRL---HSSA 162
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G+++R+ IAR L M+P VL +DEP LD +S + + +L ++ T N
Sbjct: 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
Query: 306 QSSTEVFGLFDRICLLSNGNTLFFGET 332
+ + DR NG+ + + +T
Sbjct: 223 MQ--QALRVSDRTAFFLNGDLVEYDQT 247
|
Length = 268 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 8e-07
Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 19/208 (9%)
Query: 137 TMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGA----KSEMPYG---SYGFV 187
++T I+GP+ GKST+LR+I L SAR+ G++ ++ + P G V
Sbjct: 31 SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMV 90
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
++ ++++ Y A +L G + +VE ++ ++L D + +
Sbjct: 91 FQKPNPFPAMSI--YDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME 148
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G+++R+ IAR + ++P V+ +DEP LD +S L + +++L ++ T N
Sbjct: 149 --LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206
Query: 306 -QSSTEVFGLFDRICLLSNGNTLFFGET 332
Q + V D G+ + GET
Sbjct: 207 MQQAARV---SDYTAFFYMGDLVECGET 231
|
Length = 252 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 25/186 (13%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPY 181
+ +K+ N +T ++GP+ GKSTLLR++ L R+ G+V +G + Y
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG---QDIY 71
Query: 182 GSYGFVERETTLIG---------SLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMS 230
V +G +++ + + Y +L G +++ +VE+++ +
Sbjct: 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAA 129
Query: 231 LSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL---LM 286
L D ++L H GL G+++R+ IAR L + P VL +DEP LD ++ +
Sbjct: 130 LWDEVKDRL---HDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL 186
Query: 287 MVTLKK 292
+ LKK
Sbjct: 187 IQELKK 192
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 9e-07
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 32/204 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNG-----AKSEMPYGSYG 185
PG + I+G + SGKSTL + I R Y G V V+G A G
Sbjct: 27 PGEVVGIVGRSGSGKSTLTKLIQ-------RFYVPENGRVLVDGHDLALADPAWLRRQVG 79
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V +E L + ++R+ + L PG +R V +A D+ ++L G+ +
Sbjct: 80 VVLQENVLF-NRSIRDNI----ALADPGMSMER---VIEAAKLAGAHDFISELPEGYDTI 131
Query: 246 -----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GL G+R+R+ IAR L+ P +L DE LD S +M + + G T+
Sbjct: 132 VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI-CAGRTV 190
Query: 301 LFTINQSSTEVFGLFDRICLLSNG 324
+ ++ ST DRI ++ G
Sbjct: 191 IIIAHRLSTVKNA--DRIIVMEKG 212
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 52/191 (27%), Positives = 72/191 (37%), Gaps = 59/191 (30%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
PG ++G +GKSTLLR +AG GE P G++ +E L
Sbjct: 29 FPGAKIGVLGLNGAGKSTLLRIMAGV---DKEFNGEARP------APGIKVGYLPQEPQL 79
Query: 194 IGSLTVRE-------------------YLYYS-------ALLQLPGFFCQRKNVVEDAIH 227
+ TVRE ++ ALL + +++ I
Sbjct: 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLA-------EQAELQEIID 132
Query: 228 AMSLSDYANKLIGGHCYMKGLPC------------GERRRVRIARELVMRPHVLFIDEPL 275
A D KL M L C GERRRV + R L+ +P +L +DEP
Sbjct: 133 AADAWDLDRKL---EIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPT 189
Query: 276 YHLD--SVSAL 284
HLD SV+ L
Sbjct: 190 NHLDAESVAWL 200
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 52/244 (21%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV-NGAKSEMPYG------------ 182
G + V+MG + SGKSTLLRA+ G P S G V V +G S
Sbjct: 50 GEICVLMGLSGSGKSTLLRAVNGLNPVSR---GSVLVKDGDGSVDVANCDAATLRRLRTH 106
Query: 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGG 241
V ++ L+ TV E + + L++ G +R+ V++ + + L+ +A++
Sbjct: 107 RVSMVFQQFALLPWRTVEENVAFG--LEMQGMPKAERRKRVDEQLELVGLAQWADR---- 160
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV-------SALLMMVTLKKLA 294
L G ++RV +AR +L +DEP LD + L + LKK
Sbjct: 161 --KPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKK-- 216
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSD 354
T++F ++ E + +RI ++ G +QH G P I+ +P++
Sbjct: 217 ----TIVF-VSHDLDEALKIGNRIAIMEGGRI---------IQH----GTPEEIVLNPAN 258
Query: 355 HFLR 358
++
Sbjct: 259 DYVA 262
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMY--GEVFVNGAKSEMPYGSYGFVERE-T 191
G+ T ++GP +GKSTLL + G LP R+ G VN + G V ++
Sbjct: 31 GSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE-VNAENEKWVRSKVGLVFQDPD 89
Query: 192 TLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
+ S TV + + + + + L + + VE+A+ A+ + D+ +K H L
Sbjct: 90 DQVFSSTVWDDVAFGPVNMGLDK--DEVERRVEEALKAVRMWDFRDK-PPYH-----LSY 141
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
G+++RV IA L M P V+ +DEP+ +LD +M L +L + G T++ +T
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIV-----ATH 196
Query: 311 VFGLF----DRICLLSNGNTLFFG--ETLACLQHFSNAGFPCPIM 349
L D++ +L G L G L AG P++
Sbjct: 197 DVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLPLV 241
|
Length = 274 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 41/161 (25%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---------SEMPY-GSY 184
G + I GP +GK++LLR +AG A GEV G ++ Y G
Sbjct: 26 AGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQGEPIRRQRDEYHQDLLYLGHQ 82
Query: 185 GFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
++ E LT E L +Y L + +A+ + L+ + +
Sbjct: 83 PGIKTE------LTALENLRFYQRLHG-----PGDDEALWEALAQVGLAGFED------- 124
Query: 244 YMKGLPC-----GERRRVRIARELVMRPHVLFIDEPLYHLD 279
+P G++RRV +AR + R + +DEP +D
Sbjct: 125 ----VPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
Length = 204 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 44/218 (20%)
Query: 97 VARKIAGASVVWKDLTVTIK---------GKRRYS-DK-VVKSSNGYAL---PGTMTVIM 142
VA + G S V K+ V + KR S D+ VVK+ + +L G + I+
Sbjct: 257 VAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIV 316
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGEVFV--------------NGAKSEMPYGSYGFVE 188
G + +GK+TL + IAG L ++ GEV V +G Y G +
Sbjct: 317 GTSGAGKTTLSKIIAGVLEPTS---GEVNVRVGDEWVDMTKPGPDGRGRAKRY--IGILH 371
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCY 244
+E L TV + L + L+LP + K A+ + + + A +++ Y
Sbjct: 372 QEYDLYPHRTVLDNLTEAIGLELPDELARMK-----AVITLKMVGFDEEKAEEILDK--Y 424
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
L GER RV +A+ L+ P ++ +DEP +D ++
Sbjct: 425 PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPIT 462
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 37/222 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--------AK 176
V+K + G + ++G +GKSTL++ IAG +P + G + + G AK
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIGGNPCARLTPAK 82
Query: 177 SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236
+ G Y V +E L +L+V+E + L LP S+
Sbjct: 83 AHQ-LGIY-LVPQEPLLFPNLSVKENI----LFGLPK-------------RQASMQKMKQ 123
Query: 237 KLIGGHCYMK------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
L C + L +R+ V I R L+ +L +DEP L + +
Sbjct: 124 LLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183
Query: 291 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
++L + G ++F I+ E+ L DRI ++ +G G+T
Sbjct: 184 RELLAQGVGIVF-ISHKLPEIRQLADRISVMRDGTIALSGKT 224
|
Length = 510 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 22/210 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
+T ++GP+ GKST LR + L + G V + G P + ++ +
Sbjct: 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGM 90
Query: 194 IGS------LTVREYLYYSALLQLPGFFCQRKNVVEDAI-----HAMSLSDYANKLIGGH 242
+ ++ E + Y L+L G + K V+++A+ A + + L H
Sbjct: 91 VFQQPNPFPFSIYENVIYG--LRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHL---H 143
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
L G+++RV IAR L ++P V+ +DEP LD +S+ + L +L +L
Sbjct: 144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILV 203
Query: 303 TINQSSTEVFGLFDRICLLSNGNTLFFGET 332
T + D+ GN + F +T
Sbjct: 204 THSMHQASRIS--DKTAFFLTGNLIEFADT 231
|
Length = 252 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 19/224 (8%)
Query: 121 YSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVFVNGAK 176
Y +K VK+ +T I+GP+ GK+TLLR+I +P R+ G+++ G
Sbjct: 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIP-GFRVEGKIYFKGQD 71
Query: 177 SEMPYGSYGFVERETTLIGS------LTVREYLYYSALLQLPGFFCQRK--NVVEDAIHA 228
P ++ ++ +++ + + + ++ G + K +VE+++
Sbjct: 72 IYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKK 129
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288
+L D + L G+++R+ IAR L + P V+ +DEP LD ++ +
Sbjct: 130 AALWDEVKSELNKPGT--RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187
Query: 289 TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
L++L+ ++ T N + + D I + G + +G T
Sbjct: 188 LLEELSENYTIVIVTHNIG--QAIRIADYIAFMYRGELIEYGPT 229
|
Length = 250 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 29/225 (12%)
Query: 117 GKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176
KR KVV + G + ++GP +GK+T I G + + G++ ++
Sbjct: 15 KKR----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDED 67
Query: 177 -SEMPYGS-----YGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIH 227
+++P G++ +E ++ LTV + + A+L++ +RK ++ +
Sbjct: 68 ITKLPMHKRARLGIGYLPQEASIFRKLTVEDNI--MAVLEIREKDLKKAERKEELDALLE 125
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD--SVSALL 285
++ + L GERRRV IAR L P + +DEP +D +V +
Sbjct: 126 EFHITHLRDSKAYS------LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ 179
Query: 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
++ K L G +L T + + E + DR ++S+G L G
Sbjct: 180 RII--KHLKDRGIGVLIT-DHNVRETLDICDRAYIISDGKVLAEG 221
|
Length = 243 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 24/230 (10%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL + G + + + + N A + ++GP +GKSTL R G L ++ G
Sbjct: 7 RDLCYSYSGSK----EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---G 59
Query: 169 EVFVNGAK--SEMPYGSYGFV----ERETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNV 221
V + G E FV + I S TV + + + + L L +
Sbjct: 60 SVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHR-- 117
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
V A+H + L + ++ + H L GE++RV IA + M P VL +DEP LD
Sbjct: 118 VSSALHMLGLEELRDR-VPHH-----LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
Query: 282 SALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
++ L L T G T++F+ +Q V + D I ++ G + +G
Sbjct: 172 GVKELIDFLNDLPETYGMTVIFSTHQLDL-VPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 49/201 (24%)
Query: 121 YSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAK 176
Y DK +K N +T ++GP+ GKSTLLR + R L AR+ GEV ++G
Sbjct: 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDG-- 73
Query: 177 SEMPYGSYGFVERETTLIG---------SLTVREYLYYSALLQLPGFFCQRKN-----VV 222
+ Y V +G +++ + + Y L K+ +V
Sbjct: 74 -KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLH------GIKDKELDEIV 126
Query: 223 EDAIHAMSL--------SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
E ++ +L A L GG +++R+ IAR L ++P VL +DEP
Sbjct: 127 ESSLKKAALWDEVKDRLHKSALGLSGG----------QQQRLCIARALAVKPEVLLMDEP 176
Query: 275 LYHLDSVSAL---LMMVTLKK 292
LD +S L ++ LKK
Sbjct: 177 TSALDPISTLKIEELITELKK 197
|
Length = 253 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 2e-06
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 25/186 (13%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKS-EMP 180
+V+ N T+T +MGP+ SGKSTLLR L AR+ GEV+++G +M
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 181 YGSYGFVERETTL-------IGSLTVREYLYYSAL-LQLPGFFCQRKNV---VEDAIHAM 229
+ R + I +L++ E + AL L+L +K + V A+
Sbjct: 77 VIE---LRRRVQMVFQIPNPIPNLSIFENV---ALGLKLNRLVKSKKELQERVRWALEKA 130
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL---LM 286
L D + L G+++R+ IAR L +P VL DEP +LD + +
Sbjct: 131 QLWDEVKDRLDAPA--GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL 188
Query: 287 MVTLKK 292
+ LKK
Sbjct: 189 FLELKK 194
|
Length = 250 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 50/257 (19%), Positives = 88/257 (34%), Gaps = 39/257 (15%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTV---------------IMGPAKS 147
S V K + + ++ + G I+G +
Sbjct: 5 KVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGA 64
Query: 148 GKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA 207
GKSTLL+ IAG ++ G+V V G + + GF LT RE +Y
Sbjct: 65 GKSTLLKLIAGIYKPTS---GKVKVTGKVAPLIELGAGF-------DPELTGRENIYLRG 114
Query: 208 LLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVRIARELVM-- 264
L + G + + D I + L D+ ++ + Y G+ R+A +
Sbjct: 115 L--ILGLTRKEIDEKVDEIIEFAELGDFIDQPVK--TYSSGM------YARLAFSVATHV 164
Query: 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
P +L +DE L D+ + L +L T++ ++ + DR L +G
Sbjct: 165 EPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVL-VSHDLGAIKQYCDRAIWLEHG 223
Query: 325 NTLFFGETLACLQHFSN 341
G + +
Sbjct: 224 QIRMEGSPEEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 3e-06
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 53/222 (23%)
Query: 110 DLTVTIKGKRRYSDKVVKSSNGYAL---------PGTMTVIMGPAKSGKSTLLRAIAGRL 160
+ VTI+ + D + S +G L G ++GP+ +GK++LL A+ G L
Sbjct: 345 NDPVTIEAE----DLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400
Query: 161 PHSARMYGEVFVNGAK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ-- 217
P+ G + +NG + E+ S+ R++L S + Q P
Sbjct: 401 PYQ----GSLKINGIELRELDPESW---------------RKHL--SWVGQNPQLPHGTL 439
Query: 218 RKNV-----------VEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRRVRIARE 261
R NV ++ A+ +S++ L G GL G+ +R+ +AR
Sbjct: 440 RDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499
Query: 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
L+ +L +DEP LD+ S L+M L + TL+ T
Sbjct: 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT 541
|
Length = 588 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 72/278 (25%), Positives = 119/278 (42%), Gaps = 55/278 (19%)
Query: 89 PPLPEGAAVARKIAGASVVWKDLTVTIKGK----RRYSD--KVVKSSNGYALPGTMTVIM 142
PPLPE A V ++ +DL V K RR D + V + G ++
Sbjct: 267 PPLPEDAPVLLEV-------EDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV 319
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMY--GEVFVNGAKSEM-------------PYGSYGFV 187
G + SGKSTL A+ +P + G+ ++ EM PYGS
Sbjct: 320 GESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS--LS 377
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-----SDYANKLIGGH 242
R T +G + + E L + + +R V +A+ + L + Y ++ GG
Sbjct: 378 PRMT--VGQI-IEEGL---RVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG- 430
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKL-ASTGCTL 300
+R+R+ IAR L+++P ++ +DEP LD SV A ++ + L+ L G +
Sbjct: 431 ---------QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL-LRDLQQKHGLSY 480
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
LF I+ V L R+ ++ +G + G T A +
Sbjct: 481 LF-ISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 30/226 (13%)
Query: 119 RRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
+R+ V+ N G ++GP+ SGKST+LR + P G++ V G +
Sbjct: 8 KRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQL 64
Query: 178 -EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF---CQRKNVVEDAIH------ 227
MP + V + + +R + + Q F NV E +
Sbjct: 65 YHMPGRNGPLVPADEKHLRQ--MRNKI--GMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 228 ------AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
AM L D L G+++RV IAR L MRP V+ DE LD
Sbjct: 121 AEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 282 SALLMMVTLKKLAS-TGCTLLFTINQSSTEVFG--LFDRICLLSNG 324
++ +++LAS T+L ++ F DR+C G
Sbjct: 181 LVGEVLNVIRRLASEHDLTMLLVTHEMG---FAREFADRVCFFDKG 223
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 54/193 (27%), Positives = 80/193 (41%), Gaps = 24/193 (12%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200
++G +GKSTLLR +AG P + G V V G S + GF LT R
Sbjct: 53 LIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSLLGLGGGFN-------PELTGR 102
Query: 201 EYLYYSALLQLPGFFCQRKNV--VEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVR 257
E +Y + L G RK + D I S L D+ + +K G + R+
Sbjct: 103 ENIYLNGRLL--G--LSRKEIDEKIDEIIEFSELGDFIDL------PVKTYSSGMKARLA 152
Query: 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317
A + P +L IDE L D+ L++L G T++ ++ + + L DR
Sbjct: 153 FAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVIL-VSHDPSSIKRLCDR 211
Query: 318 ICLLSNGNTLFFG 330
+L G F G
Sbjct: 212 ALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 39/211 (18%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP------YGSYGFVERETTL 193
++GP +GKSTLL +AG LP S G + G + +Y +++T
Sbjct: 27 LVGPNGAGKSTLLARMAGLLPGS----GSIQFAGQPLEAWSAAELARHRAY-LSQQQTPP 81
Query: 194 IGSLTVREYL--YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
++ V +YL + + + + + A+ L D + + L G
Sbjct: 82 F-AMPVFQYLTLHQPDKTRT----EAVASALNEVAEALGLDDKLGRSVN------QLSGG 130
Query: 252 ERRRVRIAREL-----VMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT- 303
E +RVR+A + + P +L +DEP+ LD + L +L G ++ +
Sbjct: 131 EWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSS 190
Query: 304 --INQSSTEVFGLFDRICLLSNGNTLFFGET 332
+N + DR+ LL G L G
Sbjct: 191 HDLNHTLRHA----DRVWLLKQGKLLASGRR 217
|
Length = 248 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 19/211 (9%)
Query: 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK------ 176
VK+ +G L PG + G +GKSTL++ ++G PH GE++ +G+
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGT-WDGEIYWSGSPLKASNI 72
Query: 177 SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV---EDAIHAMSLSD 233
+ + +E TL+ L+V E ++ + LPG + ++ + + L
Sbjct: 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA 132
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
G G+++ V IA+ L + +L +DEP L +++ ++ L
Sbjct: 133 DNVTRPVGD-----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 294 ASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
+ G ++ I+ EV + D IC++ +G
Sbjct: 188 KAHGVACVY-ISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 38/240 (15%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARM 166
K+L+V+ K V + G + I+G + SGKS L +AI G LP + +
Sbjct: 5 KNLSVSFPTDAGVV-KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIV 63
Query: 167 YGEVFVNG------AKSEMP--YG---SYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215
GE+ +G ++ E+ G + F + T+L +T+ + + L G
Sbjct: 64 GGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL- 122
Query: 216 CQRKNVVEDAIHAMS----------LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265
+K E AI + L Y ++L GG R+RV IA L +
Sbjct: 123 -SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGM----------RQRVMIAMALALN 171
Query: 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 324
P +L DEP LD ++ LK+L G L+ I V + DR+ ++ G
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALIL-ITHDLGVVAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKSEMPYGSYGFVE 188
PG M + G + +GKSTLL+ I G SA G+++ +G E+P F+
Sbjct: 27 PGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREVP-----FLR 78
Query: 189 RETTLI---GSLTVREYLYYSALLQL-----PGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
R+ +I L + +Y + + L G +R+ V A+ + L D A
Sbjct: 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR--VSAALDKVGLLDKAKN--- 133
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
+ L GE++RV IAR +V +P VL DEP +LD + ++ ++ G T+
Sbjct: 134 ---FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTV 190
Query: 301 L 301
L
Sbjct: 191 L 191
|
Length = 222 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 18/198 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS--------YGF 186
G + ++G +GKSTL++ + G + GE+ V+G E+ S G
Sbjct: 29 KGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDGK--EVRIKSPRDAIRLGIGM 83
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
V + L+ +LTV E + +L L + + LS+ + +
Sbjct: 84 VHQHFMLVPTLTVAENI----ILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA 139
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
L GE++RV I + L +L +DEP L A + L++LA+ G T++F I
Sbjct: 140 DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIF-ITH 198
Query: 307 SSTEVFGLFDRICLLSNG 324
EV + DR+ +L G
Sbjct: 199 KLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 32/168 (19%)
Query: 130 NGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-MP---YG 182
N L + ++GP +GK+T+ + G + G + + G E +P
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRGQHIEGLPGHQIA 78
Query: 183 SYGFVE--------RETTLIGSLTVREYLY-----YSALLQLPGFFCQRKNVVEDAIH-- 227
G V RE T+I +L V ++ +S LL+ P F ++ A
Sbjct: 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL 138
Query: 228 -AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ L ++AN+ G Y G++RR+ IAR +V +P +L +DEP
Sbjct: 139 ERVGLLEHANRQAGNLAY------GQQRRLEIARCMVTQPEILMLDEP 180
|
Length = 255 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG---------AKSEMPYGSY 184
G M I+G + SGKSTLL + G P S G+V NG AK+E+
Sbjct: 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTS----GDVIFNGQPMSKLSSAAKAELRNQKL 89
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244
GF+ + L+ T E + A+ L G + + A+ ++ ++ +
Sbjct: 90 GFIYQFHHLLPDFTALENV---AMPLLIGK-KKPAEINSRALEMLAAVGLEHR---ANHR 142
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
L GER+RV IAR LV P ++ DEP +LD+ +A
Sbjct: 143 PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 49/190 (25%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+ L+V+ G K + + Y PG + VI+GP +GK+T++ I G+ G
Sbjct: 6 EGLSVSFDGF-----KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE---G 57
Query: 169 EVFVNGAK-SEMPYGSYGFVERETTLIG------------SLTVREYLYYSALLQLPG-- 213
V G + +P E + G +LTV E L L LP
Sbjct: 58 SVLFGGTDLTGLP-------EHQIARAGIGRKFQKPTVFENLTVFENL----ELALPRDK 106
Query: 214 -----FFCQRKNVVEDAIHAM----SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264
F + +D I + L+D A++L G L G+++ + I L+
Sbjct: 107 SVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG------LLSHGQKQWLEIGMLLMQ 160
Query: 265 RPHVLFIDEP 274
P +L +DEP
Sbjct: 161 DPKLLLLDEP 170
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 34/225 (15%)
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
Y V+K+ + G + + G SGKS+LL I G L S G++ +G S P
Sbjct: 437 YVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSGRISFSP 493
Query: 181 YGSY---GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
S+ G + ++ + G L+ EY Y S + CQ + ED ++ + K
Sbjct: 494 QTSWIMPGTI-KDNIIFG-LSYDEYRYTSVIKA-----CQLE---ED------IALFPEK 537
Query: 238 ----LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL-LMMVTLKK 292
L G + G G+R R+ +AR + + +D P HLD V+ + L K
Sbjct: 538 DKTVLGEGGITLSG---GQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK 594
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
L S +L T S E D+I LL G F+G T + LQ
Sbjct: 595 LMSNKTRILVT---SKLEHLKKADKILLLHEGVCYFYG-TFSELQ 635
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 7e-06
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 17/237 (7%)
Query: 120 RYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKS 177
RY D+ V+K N +T ++G GKSTL ++G L P G V G
Sbjct: 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK----GAVLWQG--K 63
Query: 178 EMPYGSYGFVE-RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236
+ Y G + R+ + ++Y+ + F + V E I + +
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI-TRRVDEALT 122
Query: 237 KLIGGHCYMKGLPC---GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
+ H + + C G+++RV IA LV++ L +DEP LD M+ ++++
Sbjct: 123 LVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI 182
Query: 294 ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF---GETLACLQHFSNAGFPCP 347
+ G ++ + + ++ + D + +L G L GE AC + AG P
Sbjct: 183 VAQGNHVIIS-SHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G + V ++ + I G + VI+GP+ SGKSTLLR I
Sbjct: 12 GPTQVLHNIDLNID------------------QGEVVVIIGPSGSGKSTLLRCINKLEEI 53
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV 222
++ G++ V+G K P ER + +++ + L L +NV+
Sbjct: 54 TS---GDLIVDGLKVNDPKVD----ERLIRQEAGMVFQQFYLFPHLTAL-------ENVM 99
Query: 223 EDAIHAMSLS-----DYANKLIG-------GHCYMKGLPCGERRRVRIARELVMRPHVLF 270
+ S A +L+ H Y L G+++RV IAR L ++P ++
Sbjct: 100 FGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159
Query: 271 IDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
DEP LD ++ ++ LA G T++
Sbjct: 160 FDEPTSALDPELRHEVLKVMQDLAEEGMTMV 190
|
Length = 240 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 7e-06
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L GER+ V IAR L +L +DEP L + +++L + G ++F I+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIF-ISHR 141
Query: 308 STEVFGLFDRICLLSNG 324
EVF + DR+ +L +G
Sbjct: 142 LDEVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
KDL V+++ K ++K N G + IMGP SGKSTL + IAG P G
Sbjct: 4 KDLHVSVEDKE-----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSG 57
Query: 169 EVFVNG 174
+ G
Sbjct: 58 TILFKG 63
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 63/258 (24%), Positives = 105/258 (40%), Gaps = 44/258 (17%)
Query: 86 LPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPA 145
L SPP + A + A V ++++T G+ R + S + PG ++G +
Sbjct: 311 LDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDR---PALDSISLVIEPGETVALVGRS 367
Query: 146 KSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY---------GFVERETTLIGS 196
SGKSTL+ I + G++ ++G Y V ++ L
Sbjct: 368 GSGKSTLVNLIPRFYEPDS---GQILLDG----HDLADYTLASLRRQVALVSQDVVLFND 420
Query: 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG-----LPCG 251
T+ + Y Q + +E A+ A D+ +KL G G L G
Sbjct: 421 -TIANNIAYGRTEQAD------RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL-----LFTINQ 306
+R+R+ IAR L+ +L +DE LD+ S L+ L++L TL L TI +
Sbjct: 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEK 533
Query: 307 SSTEVFGLFDRICLLSNG 324
+ DRI ++ +G
Sbjct: 534 A--------DRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 26/182 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAI-AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G + GP+ +GKSTLL+++ A LP S R+ V GA ++ S RE
Sbjct: 33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL--VRHEGAWVDLAQAS----PREVLE 86
Query: 194 IGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGG----------- 241
+ T+ Y S L+ +P VV + + + A +
Sbjct: 87 VRRKTIG---YVSQFLRVIPRVSA--LEVVAEPLLERGVPREAARARARELLARLNIPER 141
Query: 242 --HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
H GE++RV IAR + +L +DEP LD+ + +++ + + + G
Sbjct: 142 LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAA 201
Query: 300 LL 301
L+
Sbjct: 202 LI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 8e-06
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 41/177 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS----------- 183
PG + I+G + SGKSTLL +AGRL + +GA+ E+ S
Sbjct: 28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTE 87
Query: 184 YGFVE-------RETTLIGSLTVREYL------YYSALLQLPGFFCQRKNVVEDAIHAMS 230
+GFV R G+ + E L +Y + + + VE I
Sbjct: 88 WGFVHQNPRDGLRMRVSAGA-NIGERLMAIGARHYGNIRATAQDWLEE---VE--IDPTR 141
Query: 231 LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 286
+ D GG ++R++IAR LV RP ++F+DEP LD SV A L+
Sbjct: 142 IDDLPRAFSGGM----------QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 188
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 8e-06
Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 41/177 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVN------GAKSEMPYGS 183
PG + I+G + SGK+TLL+ I+GRL A RM + + +
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTE 90
Query: 184 YGFVE-------RETTLIGSLTVREYL------YYSALLQLPGFFCQRKNVVEDAIHAMS 230
+GFV R G + E L +Y + + + VE I
Sbjct: 91 WGFVHQNPRDGLRMQVSAGG-NIGERLMAIGARHYGNIRAEAQDWLEE---VE--IDLDR 144
Query: 231 LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 286
+ D GG ++R++IAR LV RP ++F+DEP LD SV A L+
Sbjct: 145 IDDLPRTFSGGM----------QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 191
|
Length = 258 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 8e-06
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLD--SVSAL 284
GE+ R+ +A+ L+ P++L +DEP HLD S+ AL
Sbjct: 74 GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL 109
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 39/162 (24%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SEMPYGSYGFVERETT 192
PG + V++GP +GK+TL+ I G+ GEV +G +++P E
Sbjct: 30 PGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLP-------EHRIA 79
Query: 193 LIG------------SLTVREYLYYSALLQLPGFF---CQR-----KNVVEDAIHAMSLS 232
G +LTVRE L AL + F R + +++ + + L
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLEL-ALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
D ++L L G+++ + I L P +L +DEP
Sbjct: 139 DERDRLAA------LLSHGQKQWLEIGMLLAQDPKLLLLDEP 174
|
Length = 249 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 78/277 (28%), Positives = 116/277 (41%), Gaps = 77/277 (27%)
Query: 81 LNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKR-RY---SDKVVKSSNGYALPG 136
LNS P+ P G A ++ GA +T + R RY S +V+ + N PG
Sbjct: 435 LNS---PTEPRSAGLAALPELRGA--------ITFENIRFRYAPDSPEVLSNLNLDIKPG 483
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGA----------KSEMPYG 182
I+GP+ SGKSTL + + R+Y G+V V+G + +M
Sbjct: 484 EFIGIVGPSGSGKSTLTKLLQ-------RLYTPQHGQVLVDGVDLAIADPAWLRRQM--- 533
Query: 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242
G V +E L S ++R+ + C E IHA KL G H
Sbjct: 534 --GVVLQENVLF-SRSIRDNIA----------LCNPGAPFEHVIHAA-------KLAGAH 573
Query: 243 CYMKGLP---------------CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287
++ LP G+R+R+ IAR LV P +L DE LD S L+M
Sbjct: 574 DFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIM 633
Query: 288 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
++++ G T++ ++ ST V DRI +L G
Sbjct: 634 RNMREI-CRGRTVIIIAHRLST-VRAC-DRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 54/215 (25%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
PG ++G + GKST++ + R Y GE+ ++G ++ G
Sbjct: 28 PGKTVALVGSSGCGKSTVVSLLE-------RFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA----------MSLSDYA 235
V +E L T+ E + Y E+ A MSL D
Sbjct: 81 LVSQEPVLF-DGTIAENIRYGK----------PDATDEEVEEAAKKANIHDFIMSLPDGY 129
Query: 236 NKLIGGH-CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
+ L+G + G G+++R+ IAR L+ P +L +DE LD+ S L+ L +
Sbjct: 130 DTLVGERGSQLSG---GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM 186
Query: 295 STGCTL-----LFTINQSSTEVFGLFDRICLLSNG 324
T+ L TI + D I +L NG
Sbjct: 187 KGRTTIVIAHRLSTIRNA--------DLIAVLQNG 213
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 34/205 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PY---GSYGFVER 189
PG I+G SGKSTLL+ + G + G V ++G P + G+V +
Sbjct: 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDGVDIRQIDPADLRRNIGYVPQ 546
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED-----AIHAMSLSDYANKLIGGHCY 244
+ L T+R+ + A +D A ++++ + G
Sbjct: 547 DPRLF-YGTLRDNIALGAPY------------ADDEEILRAAELAGVTEFVRRHPDGLDM 593
Query: 245 M-----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
+ L G+R+ V +AR L+ P +L +DEP +D+ S LK+ + G T
Sbjct: 594 QIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKT 652
Query: 300 LLFTINQSSTEVFGLFDRICLLSNG 324
L+ +++S + L DRI ++ NG
Sbjct: 653 LVLVTHRTS--LLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 57/228 (25%), Positives = 82/228 (35%), Gaps = 58/228 (25%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY- 167
++LTV V+ + PG + I+G + SGKSTL A+ G LP R+
Sbjct: 9 ENLTVEFATDGGRVP-AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITS 67
Query: 168 GEVFVNGA------KSEM--------------PYGSY------GFVERETTLIGSLTVRE 201
GEV ++G + EM P S G RE + R
Sbjct: 68 GEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRA 127
Query: 202 YLYYSAL-----LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256
A+ + LP Y ++L GG R+RV
Sbjct: 128 EARKRAVELLEQVGLP--------------DPERRDRYPHQLSGG----------MRQRV 163
Query: 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFT 303
IA L ++P +L DEP LD + ++ LK L G +LF
Sbjct: 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI 211
|
Length = 539 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 25/158 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----VNGAKSEMPYGSYGFVER 189
G I GP+ GKSTLL+ +A + ++ G + V+ K E + +
Sbjct: 28 AGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQ 84
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED----AIHAMSLSDYANKLIGGHCYM 245
L G TV + L + ++ R ++ A+ L+ +L G
Sbjct: 85 TPALFGD-TVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSG----- 136
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
GE++R+ + R L P +L +DE LD +
Sbjct: 137 -----GEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
|
Length = 223 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 46/197 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G ++G + SGKSTLL+ + G L P GE+ ++G P L
Sbjct: 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQ----GEITLDGV----PVSDLEKALSS--L 76
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253
I L R YL+ + L G + GER
Sbjct: 77 ISVLNQRPYLFDTTLRNNLG--------------------------------RRFSGGER 104
Query: 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313
+R+ +AR L+ ++ +DEP LD ++ ++ + ++ + T + + E
Sbjct: 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH-- 162
Query: 314 LFDRICLLSNGNTLFFG 330
D+I L NG + G
Sbjct: 163 -MDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 437 VLTWRSLLIMSREWKY-YWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFN 495
L R L R+ RLI +++ L GTVF L S + R +F + FN
Sbjct: 5 ALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTS-LGGLNRPGLLFFSILFN 63
Query: 496 SLLNIAGV-PALMKEIKV 512
+ ++ G+ P ++E V
Sbjct: 64 AFSSLTGISPVFIRERGV 81
|
Length = 210 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 33/171 (19%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHS----ARMYGEVFVNGAKSEMPYGS------ 183
P ++T +GP+ GKST+LR + R+ H AR+ GEV ++G E YG
Sbjct: 28 EPRSVTAFIGPSGCGKSTVLRTL-NRM-HEVIPGARVEGEVLLDG---EDLYGPGVDPVA 82
Query: 184 ----YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMSL----SD 233
G V + ++++R+ + A L+L G ++ +VE ++ +L D
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD 140
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
+K GG GL G+++R+ IAR + + P VL +DEP LD +S L
Sbjct: 141 RLDK-PGG-----GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTL 185
|
Length = 258 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 44/210 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNG---AKSEMPY--GSYG 185
G I+GP+ SGKST+LR + R Y G + ++G + + + G
Sbjct: 26 AGKKVAIVGPSGSGKSTILRLLF-------RFYDVSSGSILIDGQDIREVTLDSLRRAIG 78
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV----VEDA-----IHA--MSLSDY 234
V ++T L T+ + Y R + V +A IH M D
Sbjct: 79 VVPQDTVLFND-TIGYNIRYG-----------RPDATDEEVIEAAKAAQIHDKIMRFPDG 126
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
+ ++G L GE++RV IAR ++ P +L +DE LD+ + + L+ +
Sbjct: 127 YDTIVGERGLK--LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV- 183
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNG 324
S G T + ++ ST V D+I +L +G
Sbjct: 184 SKGRTTIVIAHRLSTIVNA--DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 25/157 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G +T ++G SGKSTLL+ + GR H GE+ ++ E + S F + L
Sbjct: 36 AGKVTGLIGHNGSGKSTLLK-MLGR--HQPPSEGEILLDAQPLE-SWSSKAFARKVAYLP 91
Query: 195 GSL------TVRE------YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242
L TVRE Y ++ AL + F + VE+AI + L A++L+
Sbjct: 92 QQLPAAEGMTVRELVAIGRYPWHGALGR---FGAADREKVEEAISLVGLKPLAHRLV--- 145
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
L GER+R IA + L +DEP LD
Sbjct: 146 ---DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 30/209 (14%)
Query: 141 IMGPAKSGKSTLLRAIAGRL----PHSARMYGEVFVNGA----------KSEMPYGSYGF 186
IMGP+ SGKSTLL+ + RL ++ G+V G + E+ G
Sbjct: 41 IMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV-----GM 94
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQR--KNVVEDAIHAMSL-SDYANKLIGGHC 243
V ++ L++ + + Y L+ G +R K +VE+ + + L + ++L
Sbjct: 95 VFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPAS 152
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+ G G+++R+ IAR L ++P VL +DEP +D V++ + + +L + ++
Sbjct: 153 QLSG---GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVI-- 207
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFGET 332
++ + +V + D + L NG + +G +
Sbjct: 208 VSHNPQQVARVADYVAFLYNGELVEWGSS 236
|
Length = 257 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 3e-05
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
GE++R+ AR L+ +P +F+DE LD S + LK+L G T++ ++ S
Sbjct: 95 GEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLW 151
Query: 311 VFGLFDRICLLSN 323
F DR+ L
Sbjct: 152 KF--HDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 4e-05
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 30/165 (18%)
Query: 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL---- 193
+T I+GP+ GKST L+ L + EV V G + + + ER L
Sbjct: 35 VTAIIGPSGCGKSTFLKC----LNRMNELESEVRVEG---RVEFFNQNIYERRVNLNRLR 87
Query: 194 -----------IGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSD-YANKLI 239
+ ++V + + Y +++ G+ + ++VE A+ L D +K+
Sbjct: 88 RQVSMVHPKPNLFPMSVYDNVAYG--VKIVGWRPKLEIDDIVESALKDADLWDEIKHKI- 144
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
H L G+++R+ IAR L ++P VL +DEP + LD ++++
Sbjct: 145 --HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASM 187
|
Length = 261 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 31/156 (19%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP---------YGSYG 185
G + ++G + GKSTLLR +AG +A G++ ++G S +P + SY
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSHVPPYQRPINMMFQSYA 101
Query: 186 FVERETTLIGSLTVREYLYYSALLQ--LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
L +TV + + + L Q LP + + V + + + + ++A + H
Sbjct: 102 -------LFPHMTVEQNIAF-GLKQDKLPK--AEIASRVNEMLGLVHMQEFAKR--KPH- 148
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
L G+R+RV +AR L RP +L +DEP+ LD
Sbjct: 149 ---QLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
A+ A+ L+D AN+ + L G+++RV +AR L+ RP +L +DEPL LD+++
Sbjct: 115 LQALAAVGLADRANE------WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 283 ALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+ M ++ L G T+L + S E + DR+ L+ G
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGK 211
|
Length = 257 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 24/189 (12%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTLIGSLTV 199
++GP +GKSTLL+ I G L ++ GE+ +G + G + L +LT
Sbjct: 31 LLGPNGAGKSTLLKMITGILRPTS---GEIIFDGHPWTRKDLHKIGSLIESPPLYENLTA 87
Query: 200 REYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258
RE L ++ LL LP + +++ ++ + L++ K K G ++R+ I
Sbjct: 88 RENLKVHTTLLGLP------DSRIDEVLNIVDLTNTGKKKA------KQFSLGMKQRLGI 135
Query: 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS---TEVFGLF 315
A L+ P +L +DEP LD + + ++ G T++ SS +EV L
Sbjct: 136 AIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVIL----SSHILSEVQQLA 191
Query: 316 DRICLLSNG 324
D I ++S G
Sbjct: 192 DHIGIISEG 200
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 38/184 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SEMPYGS--------Y 184
G V++GP+ +GKS+LLR + L R G + + G S+ P
Sbjct: 28 GETLVLLGPSGAGKSSLLRVL--NLLEMPRS-GTLNIAGNHFDFSKTPSDKAIRELRRNV 84
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA--------MSLSDYAN 236
G V ++ L LTV++ L++ P C+ + +D A + L YA+
Sbjct: 85 GMVFQQYNLWPHLTVQQ-----NLIEAP---CRVLGLSKDQALARAEKLLERLRLKPYAD 136
Query: 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLAS 295
+ + L G+++RV IAR L+M P VL DEP LD ++A ++ + +++LA
Sbjct: 137 R------FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI-IRELAE 189
Query: 296 TGCT 299
TG T
Sbjct: 190 TGIT 193
|
Length = 242 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----MPYGSYGFVERETT 192
+T ++G + GKST LR A++ G V + G + + G V ++
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKN---VVEDAIHAMSL-SDYANKLIGGHCYMKGL 248
+ ++ E + Y+ +L G + +V D + + L + +KL + G
Sbjct: 90 VFVK-SIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG- 145
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G+++R+ IAR L ++P +L +DEP LD +S+ ++ LK+L+ ++ T N
Sbjct: 146 --GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203
Query: 309 TEVFGLFDRICLLSNGNTLFFGET 332
+ D G + FGE+
Sbjct: 204 GKRVA--DYTAFFHLGELIEFGES 225
|
Length = 246 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-05
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETT 192
G ++ G +GK+TLLR +AG L H G++ ++G A ++
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAG-LLHVES--GQIQIDGKTATRGDRSRFMAYLGHLPG 92
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252
L L+ E L++ L L G + K + A+ + L+ Y + L+ + L G+
Sbjct: 93 LKADLSTLENLHF--LCGLHG--RRAKQMPGSALAIVGLAGYEDTLV------RQLSAGQ 142
Query: 253 RRRVRIARELVMRPHVLF-IDEPLYHLD--SVSALLMMVTLKKLASTGCTLLFT 303
++R+ +AR L + P L+ +DEP +LD ++ + M++ L G L+ T
Sbjct: 143 KKRLALAR-LWLSPAPLWLLDEPYANLDLEGITLVNRMIS-AHLRGGGAALVTT 194
|
Length = 214 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 8e-05
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 121 YSDKVVKSSNGYALP---GTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGA 175
Y +K ++ N LP +T ++GP+ GKST LR + L + ++ GEV ++G
Sbjct: 14 YGEK--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGK 71
Query: 176 K-SEMPYGSYGFVERETTLIG-----SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM 229
+ +R + +++ + + Y + + +VE A+
Sbjct: 72 NIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKA 131
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---M 286
+L D + L G+++R+ IAR + ++P V+ +DEP LD +S L +
Sbjct: 132 ALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL 189
Query: 287 MVTLKK 292
MV LKK
Sbjct: 190 MVELKK 195
|
Length = 251 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 8e-05
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 10/200 (5%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G+ T ++G SGKSTLL+ + G L G++ V+ + V ++ +
Sbjct: 32 GSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP---VRKKVGV 88
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG---LPC 250
+ + L+ +L+ F Q + ++ ++ + + K L
Sbjct: 89 VFQFPESQ-LFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSG 147
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
G+ RRV IA L M P VL +DEP LD + + MM + + +G T++ + +
Sbjct: 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL-VTHLMDD 206
Query: 311 VFGLFDRICLLSNGNTLFFG 330
V D + LL G+ + G
Sbjct: 207 VADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 8e-05
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 11/183 (6%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
+T I+GP+ GKST ++ + L ++ G V G P + + R+ ++
Sbjct: 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVF 94
Query: 196 S------LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
+++ E + Y + +VE A+ +L + GL
Sbjct: 95 QRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSAL--GLS 152
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN-QSS 308
G+++R+ IAR L ++P VL +DEP LD ++ + + + L S + T N Q +
Sbjct: 153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQA 212
Query: 309 TEV 311
T V
Sbjct: 213 TRV 215
|
Length = 259 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 25/181 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G +T ++GP+ GKST+LR++ L + G V +G P V R
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR--- 95
Query: 194 IGSL---------TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHC 243
IG + ++ E + + A ++ G+ +VE ++ ++ D +KL
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGA--RINGYTGDMDELVERSLRKAAVWDECKDKLNESGY 153
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+ G G+++R+ IAR + + P V+ +DEP LD +S L + T+ +L FT
Sbjct: 154 SLSG---GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN-----FT 205
Query: 304 I 304
I
Sbjct: 206 I 206
|
Length = 269 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 8e-05
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVE 188
++ +GP+ GKST LR L + R+ GE+ ++G K V+
Sbjct: 28 EKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ-------VD 80
Query: 189 RETTLIGSL---------TVREYLYYSALLQLPG-----FFCQRKNVVEDAIHAMSLSDY 234
+G + ++ E + Y L++ G F QR VE+ + +L D
Sbjct: 81 ELRKNVGMVFQRPNPFPKSIFENVAYG--LRVNGVKDNAFIRQR---VEETLKGAALWDE 135
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
+ + L G+++R+ IAR + + P VL +DEP LD +S
Sbjct: 136 VKDKLKESAF--ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 8e-05
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 24/171 (14%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYG---------SYGF 186
+T ++GP+ GKSTLLR + L ++ G++ ++G E YG G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG---EDIYGNIDVADLRIKVGM 87
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQR--KNVVEDAIHAMSLSDYANKLIGGHCY 244
V ++ +++ E + Y L+ G ++ VVE ++ +L D + H +
Sbjct: 88 VFQKPNPF-PMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAF 144
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 292
GL G+++R+ IAR + M P V+ +DEP LD ++ +M LKK
Sbjct: 145 --GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK 193
|
Length = 249 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 9e-05
Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 44/226 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGA-------------K 176
PG +T ++G +GKSTLL+A+AG L P AR+ G+V +NG +
Sbjct: 26 PGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLR 85
Query: 177 SEMPYGS---YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD 233
+ +P + + F RE L+G Y A + G R + A A++L+
Sbjct: 86 AVLPQAAQPAFAFSAREIVLLGR-------YPHA--RRAGALTHRDGEI--AWQALALAG 134
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIAREL---------VMRPHVLFIDEPLYHLDSVSAL 284
A L+G + L GE RV+ AR L P L +DEP LD
Sbjct: 135 -ATALVGRD--VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191
Query: 285 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
++ T+++LA + I DRI +L++G + G
Sbjct: 192 RLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237
|
Length = 272 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 32/204 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGA-----KSEMPYGSYG 185
G I+G + +GKST+LR + R Y G + ++G + + G
Sbjct: 288 LGKTVAIVGESGAGKSTILRLLF-------RFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++T L + Y+ P V A A + D+ L G+
Sbjct: 341 IVPQDTVLFND-----TIAYNIKYGRPD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392
Query: 246 KG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
G L GE++RV IAR ++ P +L +DE LD+ + + L+++++ G T
Sbjct: 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTT 451
Query: 301 LFTINQSSTEVFGLFDRICLLSNG 324
L ++ ST + D I +L NG
Sbjct: 452 LVIAHRLSTIIDA--DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 9e-05
Identities = 53/213 (24%), Positives = 82/213 (38%), Gaps = 34/213 (15%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEV----FVNGAKSEMPYGSYGFVERETTLIGS 196
I+G + SGKSTL+ G + YG + G K ++
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKE 113
Query: 197 LTVREYLYYSALLQLPGF--FCQRKNVVEDAIH----AMSLSD---------YANKLIGG 241
L R S + Q P + F K+ +E I A+ + Y NK+
Sbjct: 114 LRRR----VSMVFQFPEYQLF---KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD 166
Query: 242 HCYMK----GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 297
Y++ GL G++RRV IA L ++P +L DEP LD MM + +
Sbjct: 167 DSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANN 226
Query: 298 CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
T +F I + V + D + ++ G L G
Sbjct: 227 KT-VFVITHTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 42/201 (20%)
Query: 147 SGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY--------GFV--ERETT-LIG 195
+G++ L RA+ G P S+ GE+ ++G + S +V +R++ L+
Sbjct: 296 AGRTELARALFGARPASS---GEILLDG--KPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350
Query: 196 SLTVREYLYYSALLQL-PGFFCQRKN---VVEDAIHAM-----SLSDYANKLIGGHCYMK 246
+++ E + ++L + R+ + E I + S L GG+
Sbjct: 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGN---- 406
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA-LLMMVTLKKLASTGCTLLFTIN 305
+++V +AR L P VL +DEP +D V A + +++LA+ G +L
Sbjct: 407 ------QQKVVLARWLATDPKVLILDEPTRGID-VGAKAEIYRLIRELAAEGKAILMI-- 457
Query: 306 QSST--EVFGLFDRICLLSNG 324
SS E+ GL DRI ++ G
Sbjct: 458 -SSELPELLGLSDRILVMREG 477
|
Length = 500 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G ++G SGKSTL++ + G L P S G++ ++G + ++ L+
Sbjct: 33 GEFVGLIGHTGSGKSTLIQHLNGLLKPTS----GKIIIDGVDITDKKVKLSDIRKKVGLV 88
Query: 195 GSLTVREY-LYYSALLQLPGFFCQRKNVVEDAIH-----AMSL-----SDYANK----LI 239
EY L+ + + F + E+ I AM++ DY +K L
Sbjct: 89 --FQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELS 146
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
GG ++RRV IA + M P +L +DEP LD
Sbjct: 147 GG----------QKRRVAIAGVVAMEPKILILDEPTAGLD 176
|
Length = 287 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
L G+R+R+ +AR L P ++ +DEP +LDS + + + G T++ ++
Sbjct: 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR 531
Query: 307 SSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAG 343
S D+I +L +G FG L
Sbjct: 532 PS--ALASVDKILVLQDGRIAAFGPREEVLAKVLRPP 566
|
Length = 580 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
L G++RRV +A L M P L DEP LD ++ L G T++
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTII 219
|
Length = 305 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 18/199 (9%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + ++G + SGKS AI G L P + GE+ ++G P R I
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG----RPLLPLSIRGRHIATI 67
Query: 195 GS---------LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
T+ + + L L Q + ++ +A+ A+ L D L Y
Sbjct: 68 MQNPRTAFNPLFTMGNHAIET-LRSLGKLSKQARALILEALEAVGLPDPEEVL---KKYP 123
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G +RV IA L++ P L DEP LD V+ ++ L++L T + I
Sbjct: 124 FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLIT 183
Query: 306 QSSTEVFGLFDRICLLSNG 324
V + D + ++ +G
Sbjct: 184 HDLGVVARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
+T I+GP+ GKST ++ + ++ + ++ GE+ NG S + G VE IG
Sbjct: 40 VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG--SNILKGKVDLVELRKN-IG 96
Query: 196 SL---------TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
+ ++ + + Y + + + +VE ++ ++L D + H
Sbjct: 97 MVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRL--HTQAL 154
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 292
L G+++R+ IAR L P VL +DEP LD VS +++ LK+
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203
|
Length = 259 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 29/203 (14%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG--------FVERETT 192
I+G SGKSTL + G L G+V V+G + G F ET
Sbjct: 33 IIGKNGSGKSTLALHLNGLLRPQK---GKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQ 89
Query: 193 LIGSLTVREYLYYSALLQLPGFFC----QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
+G TV E L + P C + + V+ A+ + L Y H K L
Sbjct: 90 FVGR-TVEEDLAFG-----PENLCLPPIEIRKRVDRALAEIGLEKYR------HRSPKTL 137
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G+ + V +A L M P L DE LD S + ++ +KKL G T+++ + +
Sbjct: 138 SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITH--N 195
Query: 309 TEVFGLFDRICLLSNGNTLFFGE 331
E DRI ++ G + GE
Sbjct: 196 LEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN-QSST 309
G+++R+ IAR L +RP V+ +DEP LD +S+ + TL +L ++ T N Q +
Sbjct: 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAG 210
Query: 310 EVFGLFDRICLLSNGNTLFFGET 332
+ D+ L NG+ + G T
Sbjct: 211 RI---SDQTAFLMNGDLIEAGPT 230
|
Length = 251 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL- 193
PG + ++GP +GKSTL+R + G + G ++R L
Sbjct: 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDE--------------------GVIKRNGKLR 68
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253
IG + + YL + L + F R ++ I A LI M+ L GE
Sbjct: 69 IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLI--DAPMQKLSGGET 126
Query: 254 RRVRIARELVMRPHVLFIDEPLYHLD 279
+RV +AR L+ RP +L +DEP +D
Sbjct: 127 QRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---------GSYGF 186
G +T+I+G GKS+LL AI G + + G+V + P S +
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEM---QTLEGKVHWSNKNESEPSFEATRSRNRYSVAY 83
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
++ L+ + TV E + + + F QR V DA SL + L G
Sbjct: 84 AAQKPWLLNA-TVEENITFGS-----PFNKQRYKAVTDAC---SLQPDIDLLPFGDQTEI 134
Query: 247 G-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
G L G+R+R+ +AR L +++F+D+P LD
Sbjct: 135 GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 36/179 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL---------PHSARMYGEVFVNGAKSEMPYGSYG 185
PG + ++G + +GK+TLLR I G P S ++ EV N + +P G Y
Sbjct: 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV--EVPKNTVSALIP-GEYE 464
Query: 186 FVERETTLIGSL--TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
E T++ L + +L G Y K
Sbjct: 465 PEFGEVTILEHLRSKTGDLNAAVEILNRAG--------------LSDAVLYRRKF----- 505
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLL 301
L G++ R ++A+ L RP+VL IDE HLD ++A+ + + +LA G TL+
Sbjct: 506 --SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
|
Length = 593 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 22/197 (11%)
Query: 136 GTMTVIMGPAKSGKSTLL-------RAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE 188
G + ++G +GK+TLL RA +GR+ G+ + +++ + V
Sbjct: 31 GEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD----GKDITDWQTAKIMREAVAIVP 86
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKG 247
+ +TV E L + GFF +R E L + I M G
Sbjct: 87 EGRRVFSRMTVEENL------AMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSG 140
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
GE++ + I R L+ +P +L +DEP L + + T+++L G T +F + Q+
Sbjct: 141 ---GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMT-IFLVEQN 196
Query: 308 STEVFGLFDRICLLSNG 324
+ + L DR +L NG
Sbjct: 197 ANQALKLADRGYVLENG 213
|
Length = 237 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 286
A L+DY ++L GG ER+RV IA L+ RP +L DEP LD SV A ++
Sbjct: 147 AKRLTDYPHQLSGG----------ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQIL 196
Query: 287 MVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFP 345
+ L++L LLF I + + V L DR+ ++ NG + E FS P
Sbjct: 197 QL-LRELQQELNMGLLF-ITHNLSIVRKLADRVAVMQNGRCV---EQNRAATLFSAPTHP 251
|
Length = 529 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 41/245 (16%)
Query: 71 TTPASPSLSKL-NSGSLPSP-PLPEGAAVARKIAGASVVWKDLTVTIKG---KRRYSDKV 125
+ P P KL NS P PLPE A+ + V + I+ KR V
Sbjct: 246 SAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFP-----IRKGILKRTVDHNV 300
Query: 126 VKSSNGYAL-PGTMTVIMGPAKSGKST----LLRAIAGRLPHSARMYGEVFVNGA----- 175
V + + L PG ++G + SGKST LLR I + GE++ +G
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ--------GEIWFDGQPLHNL 352
Query: 176 --KSEMPYGS---YGFVERETTLIGSLTVREYLYYSALLQLPGFFC-QRKNVVEDAIHAM 229
+ +P F + ++L L V + + + P QR+ V + +
Sbjct: 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMV 288
L D + H Y G+R+R+ IAR L+++P ++ +DEP LD +V A ++ +
Sbjct: 413 GL-DPETR----HRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILAL 467
Query: 289 TLKKL 293
LK L
Sbjct: 468 -LKSL 471
|
Length = 529 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 53/233 (22%), Positives = 102/233 (43%), Gaps = 19/233 (8%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEMPYGSYGFVER 189
PG ++G +GK+T + + G + G+ V G S++ + + G+ +
Sbjct: 1964 PGECFGLLGVNGAGKTTTFKMLTG---DTTVTSGDATVAGKSILTNISDV-HQNMGYCPQ 2019
Query: 190 ETTLIGSLTVREYLY-YSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
+ LT RE+LY Y+ L +P ++ V +I ++ LS YA++L G +
Sbjct: 2020 FDAIDDLLTGREHLYLYARLRGVPAEEIEK--VANWSIQSLGLSLYADRLAGTY------ 2071
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G +R++ A L+ P ++ +DEP +D + ++ T+ + G ++ T + S
Sbjct: 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT-SHSM 2130
Query: 309 TEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAIN 361
E L R+ ++ G G F + ++SP D L +N
Sbjct: 2131 EECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLN 2183
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 26/221 (11%)
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
V+K+ N G M I G SGK++LL I G L S G++ +G S
Sbjct: 48 VGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKHSGRISFSS 104
Query: 181 YGSY---GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
S+ G + +E + G ++ EY Y S + CQ +E+ I D
Sbjct: 105 QFSWIMPGTI-KENIIFG-VSYDEYRYKSVVKA-----CQ----LEEDITKFPEKDNTVL 153
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAST 296
GG L G+R R+ +AR + + +D P +LD + + + + KL +
Sbjct: 154 GEGG----ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMAN 209
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
+L T S E D+I +L G++ F+G T + LQ
Sbjct: 210 KTRILVT---SKMEHLKKADKILILHEGSSYFYG-TFSELQ 246
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 21/179 (11%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF---VNGAKSEMPYGSYGFVERE 190
LP +T I G GKS+LLR IAG + S+ G ++ N PY +Y +
Sbjct: 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSS---GNIYYKNCNINNIAKPYCTY--IGHN 78
Query: 191 TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
L +TV E L + + + AIH L D ++ CY L
Sbjct: 79 LGLKLEMTVFENLKFWSE------IYNSAETLYAAIHYFKLHDLLDE----KCY--SLSS 126
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLASTGCTLLFTINQSS 308
G ++ V IAR + + + +DE +L + LL + + K S G LL + +SS
Sbjct: 127 GMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185
|
Length = 195 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 21/176 (11%)
Query: 121 YSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKS 177
Y+D K + + N L ++T ++GP+ GKST LR + L ++ G V G
Sbjct: 17 YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG--K 74
Query: 178 EMPYGSYGFVE--RETTLIGS------LTVREYLYYSALLQLPGFFCQRK--NVVEDAIH 227
+ ++ +E R+ ++ +++ + + Y ++ G ++K +VE ++
Sbjct: 75 NIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGP--KIHGTKDKKKLDEIVEQSLK 132
Query: 228 AMSL-SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
+L ++ +KL + G G+++R+ IAR L + P+V+ +DEP LD +S
Sbjct: 133 KSALWNEVKDKLNTNALSLSG---GQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185
|
Length = 254 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGA----------KSEMPYGS 183
G++ ++G SGKSTL +A+ G RL A +SE S
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWS 92
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
+ + + ++G + L+ + + +V A+ + + ++ ++ IG
Sbjct: 93 FPVLVEDVVMMGRYG------HMGWLRRAK--KRDRQIVTAALARVDMVEFRHRQIGE-- 142
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF- 302
L G+++RV +AR + + V+ +DEP +D + ++ L++L G T+L
Sbjct: 143 ----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVS 198
Query: 303 TINQSSTEVF 312
T N S F
Sbjct: 199 THNLGSVTEF 208
|
Length = 272 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 23/174 (13%)
Query: 121 YSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKS 177
Y + + VK N L +T I+GP+ GKST LRAI L S G + +G
Sbjct: 49 YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG--- 105
Query: 178 EMPYGSYGFVERETTL---IGSL---------TVREYLYYSALLQLPGFFCQRKNVVEDA 225
E YG + E L IG + ++ + + Y L Q + +VE +
Sbjct: 106 EDIYGKF---TDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKS 162
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+ +L D + + + GL G+++R+ +AR L + P +L +DEP LD
Sbjct: 163 LRKAALWDEVSDRLDKNAL--GLSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214
|
Length = 286 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 64/272 (23%), Positives = 100/272 (36%), Gaps = 56/272 (20%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL---LRAIAGRLPHSAR 165
K+LT GK + G L I+G + +GKS L LR + P S
Sbjct: 4 KNLTKKFDGKEVLKNISFTIEEGEVLG-----ILGRSGAGKSVLMHVLRGMDQYEPTS-- 56
Query: 166 MYGEVFVNGAKSEMPYGSYGFVERETTL-------IGSLTVREY-------LYYSALLQL 211
G + + A E G+VER + + G+L E + +
Sbjct: 57 --GRIIYHVALCE----KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKR 110
Query: 212 PGFFCQR-------KNVVEDAIHAMSLSDY--------ANKLIG----GHCYM---KGLP 249
QR V+++ + A+ Y A LI H + L
Sbjct: 111 IAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLS 170
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSS 308
GE++RV +AR+L P + DEP LD +A L+ L++ ++G +++ T
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHW 228
Query: 309 TEVFG-LFDRICLLSNGNTLFFGETLACLQHF 339
EV L D+ L NG G + F
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 4e-04
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 22/155 (14%)
Query: 142 MGPAKSGKSTLLRA------------IAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVER 189
+GP+ GKSTLLR + GRL + R + +N K G +R
Sbjct: 52 IGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGM--VFQR 109
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKGL 248
S + E + ++ + G+ +VED++ ++ + +KL + G
Sbjct: 110 PNPFPKS--IYENIAFAP--RANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSG- 164
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
G+++R+ IAR + M+P VL +DEP LD +S
Sbjct: 165 --GQQQRLCIARAIAMKPDVLLMDEPCSALDPIST 197
|
Length = 274 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 47/148 (31%), Positives = 65/148 (43%), Gaps = 23/148 (15%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG-SLTV 199
++GP GKST+L+ I+G L S+ G VF AK M S V+ G L+
Sbjct: 540 MVGPNGIGKSTILKLISGELQPSS---GTVF-RSAKVRMAVFSQHHVD------GLDLSS 589
Query: 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259
LY PG Q+ H S N + M L G++ RV A
Sbjct: 590 NPLLYMMRCF--PGVPEQKLRA-----HLGSFGVTGNLALQP---MYTLSGGQKSRVAFA 639
Query: 260 RELVMRPHVLFIDEPLYH--LDSVSALL 285
+ +PH+L +DEP H LD+V AL+
Sbjct: 640 KITFKKPHILLLDEPSNHLDLDAVEALI 667
|
Length = 718 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 292
GL G+++R+ IAR L + P VL +DEP LD +S L ++ LKK
Sbjct: 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK 194
|
Length = 250 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K+L ++ +++K N G + IMGP SGKSTL + IAG P + G
Sbjct: 11 KNLHASVNEN-----EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH-PAYKILEG 64
Query: 169 EVFVNG 174
++ G
Sbjct: 65 DILFKG 70
|
Length = 252 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 6e-04
Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 63/184 (34%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG + +I+GP SGK+TL RA+A L G ++++G ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDG----------------EDIL 42
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
+ + L + G R
Sbjct: 43 EEVLDQLLLIIVGGKKASGSGELR------------------------------------ 66
Query: 255 RVRIARELVMRPH--VLFIDEPLYHLDSVSALLMM------VTLKKLASTGCTLLFTINQ 306
+R+A L + VL +DE LD+ L++ + L + T++ T N
Sbjct: 67 -LRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 307 SSTE 310
Sbjct: 126 EKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT-LLF 302
L G++R I R LV P +L +DEPL LD ++ L+ + L S G T LLF
Sbjct: 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLF 457
|
Length = 490 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSY-----G 185
PG +T ++GP+ SGKST++ + Y G+V ++G Y
Sbjct: 39 PGEVTALVGPSGSGKSTVVALLE-------NFYQPQGGQVLLDGKPISQYEHKYLHSKVS 91
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V +E L ++++ + Y L C + V E A A + + ++L G+
Sbjct: 92 LVGQEPVLFAR-SLQDNIAYG----LQS--CSFECVKEAAQKAHA-HSFISELASGYDTE 143
Query: 246 KG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
G L G+++RV IAR L+ P VL +DE LD+ S
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
L G+ RRV IA L M P +L +DEP LD +M KKL +G T++
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199
|
Length = 280 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 9e-04
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
+T +GP+ GKST+LR L R+ G+V +G P V R ++
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVF 97
Query: 196 ------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGL 248
++ + + Y A ++ G+ +VE ++ +L D +KL + G
Sbjct: 98 QKPNPFPKSIYDNIAYGA--RINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSG- 154
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
G+++R+ IAR + ++P V+ +DEP LD +S L + + +L
Sbjct: 155 --GQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL 197
|
Length = 264 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 51/189 (26%), Positives = 75/189 (39%), Gaps = 49/189 (25%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200
++G + GKSTL R I G ++ GE+ G ER V
Sbjct: 44 LVGESGCGKSTLGRLILGLEEPTS---GEILFEG----KDITKLSKEERRER------VL 90
Query: 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260
E L + LP F R Y ++L GG +R+R+ IAR
Sbjct: 91 ELL---EKVGLPEEFLYR---------------YPHELSGG----------QRQRIGIAR 122
Query: 261 ELVMRPHVLFIDEPLYHLD-SVSA--LLMMVTLKKLASTGCTLLF-TINQSSTEVFGLFD 316
L + P ++ DEP+ LD SV A L ++ L++ G T LF + + S D
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE--ELGLTYLFISHDLSVVRYIS--D 178
Query: 317 RICLLSNGN 325
RI ++ G
Sbjct: 179 RIAVMYLGK 187
|
Length = 268 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 42/181 (23%)
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
+T ++GP+ SGKST LR++ R+ AR+ G++ G ++
Sbjct: 47 KITALIGPSGSGKSTYLRSL-NRMNDTIDIARVTGQILYRG------------IDINRKE 93
Query: 194 IGSLTVREYLYYSALLQLPGFFCQ--RKNV------------------VEDAIHAMSLSD 233
I +R+++ + Q P F + +N+ VE ++ +L D
Sbjct: 94 INVYEMRKHI--GMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD 151
Query: 234 YA-NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
+ L + G G+++R+ IAR + ++P +L +DEP LD +S + + T+ +
Sbjct: 152 QVKDDLHKSALTLSG---GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208
Query: 293 L 293
L
Sbjct: 209 L 209
|
Length = 267 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 32/222 (14%)
Query: 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---RMYG-EVFVNGAKSE 178
VK+ +G AL PG + ++G +GKST+++ + G A G EV NG KS
Sbjct: 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76
Query: 179 MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVE-DAIHAMSLSDYANK 237
G G + +E LI LT+ E + F R+ V I + A+K
Sbjct: 77 QEAG-IGIIHQELNLIPQLTIAENI-----------FLGREFVNRFGRIDWKKMYAEADK 124
Query: 238 LI-------GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL-DSVSALLMMVT 289
L+ + L GE++ V IA+ L V+ +DEP L D+ + L V
Sbjct: 125 LLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV- 183
Query: 290 LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
+++L S G +++ I+ E+F + D + + +G F E
Sbjct: 184 IRELKSQGRGIVY-ISHRLKEIFEICDDVTVFRDGQ--FIAE 222
|
Length = 501 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 45/199 (22%), Positives = 90/199 (45%), Gaps = 15/199 (7%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPY 181
++K+ N ++T ++GP+ GKST +R + L R G ++++G P
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76
Query: 182 GSYGFVERETTLIGSL------TVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSD 233
+ ++ ++ ++ + + Y L++ G + VE+++ A +L D
Sbjct: 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
+ GL G+++R+ IAR + + P V+ +DEP LD +S + + KL
Sbjct: 135 EVKDKLDKSAL--GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL 192
Query: 294 ASTGCTLLFTIN-QSSTEV 311
++ T N Q +T V
Sbjct: 193 KEDYTIVIVTHNMQQATRV 211
|
Length = 250 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 37/176 (21%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS----YGFVERET 191
G +T IMGP+ GK+TLLR I G++ GE+ +G +P S Y +R +
Sbjct: 33 GKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFDG--ENIPAMSRSRLYTVRKRMS 87
Query: 192 TLIGS------LTVREYLYYSAL--LQLPGFFCQRKNVVEDAIHA---MSLSDYANKLIG 240
L S + V + + Y QLP +H+ M L A L G
Sbjct: 88 MLFQSGALFTDMNVFDNVAYPLREHTQLP----------APLLHSTVMMKLE--AVGLRG 135
Query: 241 GHCYMKG-LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295
M L G RR +AR + + P ++ DEP D ++ M L KL S
Sbjct: 136 AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT----MGVLVKLIS 187
|
Length = 269 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 35/178 (19%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSA 164
V + DL T Y D ++ G G + I+GP GK+T ++ +AG + P
Sbjct: 343 VEYPDLKKT------YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--- 393
Query: 165 RMYGEVFVNGAKSEMPYGSYG--FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV 222
G++ ++ SY ++ + TV + L + +
Sbjct: 394 -------DEGSEEDLKV-SYKPQYISPDYDG----TVEDLLRSAIRSAFGSSY-----FK 436
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
+ + ++L D + + L GE +RV IA L + +DEP +LD
Sbjct: 437 TEIVKPLNLEDLLERPVDE------LSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488
|
Length = 591 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
KDL V+++ K +++ N PG + IMGP SGKSTL +AGR
Sbjct: 5 KDLHVSVEDK-----AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50
|
Length = 248 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
K L GE R+ + + L+ P +L +DEP LD S + L L +G TL+ +N
Sbjct: 134 KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLN 193
|
Length = 490 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.002
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 60/203 (29%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY--------GF 186
G + I G +G++ L A+ G P ++ GE+ ++G + S +
Sbjct: 25 AGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDG--KPVTRRSPRDAIRAGIAY 79
Query: 187 V--ER-ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
V +R L+ L+V E N ++LS L GG+
Sbjct: 80 VPEDRKREGLVLDLSVAE------------------N--------IALSSL---LSGGN- 109
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+++V +AR L P VL +DEP +D + + +++LA G +L
Sbjct: 110 ---------QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI 160
Query: 304 INQSST--EVFGLFDRICLLSNG 324
SS E+ GL DRI ++ G
Sbjct: 161 ---SSELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 25/183 (13%)
Query: 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGS 183
V+ S+ +T +GP+ GKST+LR++ L R G V G YG
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV---YGK 80
Query: 184 ----------YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD 233
G V ++ S+++ + + + L+L + + V+ A+ +L D
Sbjct: 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFG--LRLNRYKGDLGDRVKHALQGAALWD 137
Query: 234 -YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVT 289
+KL + G G+++R+ IAR + P VL +DEP LD ++ +MV
Sbjct: 138 EVKDKLKVSGLSLSG---GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194
Query: 290 LKK 292
LKK
Sbjct: 195 LKK 197
|
Length = 261 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 27/180 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSA--RMYGEVFV---NGAKSEMPYGSYGFV 187
G M I+G + SGKSTL+ I G L P S R+ G+ A +++ +GF+
Sbjct: 33 AGEMVAIVGASGSGKSTLMN-ILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFI 91
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFFC-----QRKNVVEDAIHAMSLSDYANKLIGGH 242
+ L+ LT + + ++P + QR ++ + + L D
Sbjct: 92 FQRYHLLSHLTAAQNV------EVPAVYAGLERKQRLLRAQELLQRLGLEDRVE------ 139
Query: 243 CYMKG-LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
Y L G+++RV IAR L+ V+ DEP LDS S +M L +L G T++
Sbjct: 140 -YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVI 198
|
Length = 648 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 16/180 (8%)
Query: 139 TVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGS 196
T ++GP+ GKSTLLR L R+ G++ NG + R+ IG
Sbjct: 35 TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRK---IGM 91
Query: 197 LTVREYLY----YSALLQLPGFFCQRKN-----VVEDAIHAMSLSDYANKLIGGHCYMKG 247
+ R + Y + P ++ +VE ++ +L D + H
Sbjct: 92 VFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRL--HDSALS 149
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L G+++R+ IAR L + P V+ +DEP LD ++ + ++ L ++ T N
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 68/256 (26%)
Query: 105 SVVWKDLTVTIKGKRRY---SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
+ +K++++ RY V+K+ + PG I+G SGKS+LL A+
Sbjct: 2 DIEFKNVSL------RYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF---- 51
Query: 162 HSARMY----GEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-- 215
R+ G + ++G + + IG +R + S + Q P F
Sbjct: 52 ---RLVELSSGSILIDG--------------VDISKIGLHDLRSRI--SIIPQDPVLFSG 92
Query: 216 CQRKNV----------VEDAIHAMSLSDYANKLIGGHCYM-----KGLPCGERRRVRIAR 260
R N+ + A+ + L ++ L GG + + L G+R+ + +AR
Sbjct: 93 TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLAR 152
Query: 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF------TINQSSTEVFGL 314
L+ + +L +DE +D + L+ T+++ A CT+L TI S
Sbjct: 153 ALLRKSKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIIDS------- 204
Query: 315 FDRICLLSNGNTLFFG 330
DRI +L G + F
Sbjct: 205 -DRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 221 VVEDAIHAMSL-SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+VE ++ ++ L + ++L + G G+++R+ IAR + ++P +L +DEP LD
Sbjct: 125 IVEKSLTSVGLWEELGDRLKDSAFELSG---GQQQRLCIARAIAVKPTMLLMDEPCSALD 181
Query: 280 SVSALLMMVTLKKLASTGCTLLFTI---NQSSTEVFGLFDRICLLSNGNTLFFGET 332
V+ ++ +++L FTI S + + DR+ +G + + T
Sbjct: 182 PVATNVIENLIQEL-----KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTT 232
|
Length = 251 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 50/190 (26%), Positives = 72/190 (37%), Gaps = 52/190 (27%)
Query: 132 YALPGTMTVIMGPAKSGKSTLLRAIAG-----------------RLPHSA--RMYGEVFV 172
PG I+GP+ SGKSTLLR + G L A R G V
Sbjct: 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQ 534
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-- 230
NG M G + LT+ E ++ G + I AM
Sbjct: 535 NG--RLMS----GSIFENIAGGAPLTLDEAW---EAARMAGL--------AEDIRAMPMG 577
Query: 231 ----LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+S+ L GG +R+R+ IAR LV +P +L DE LD+ + ++
Sbjct: 578 MHTVISEGGGTLSGG----------QRQRLLIARALVRKPRILLFDEATSALDNRTQAIV 627
Query: 287 MVTLKKLAST 296
+L++L T
Sbjct: 628 SESLERLKVT 637
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLD-SVSAL---LMM 287
G+R+R+ IAR L++ P V+ DEP+ LD SV A LMM
Sbjct: 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMM 198
|
Length = 327 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
GL G+++R+ IAR L + P V+ +DEP LD +S L
Sbjct: 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204
|
Length = 271 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 286
G ++R++IAR LV P ++F+DEP LD SV A L+
Sbjct: 155 GMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191
|
Length = 258 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.003
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
GE+RR+ IAR L+ +L +DEP LD+ + ++ L + A T+L +
Sbjct: 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMI----THR 533
Query: 311 VFGL--FDRICLLSNG 324
+ GL FDRIC++ NG
Sbjct: 534 LTGLEQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 61/195 (31%)
Query: 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARM 166
V K LT T+ PG + ++GP+ SGKST +A L + +
Sbjct: 496 VLKGLTFTLH------------------PGEVVALVGPSGSGKST----VAALLQN---L 530
Query: 167 Y----GEVFVNGAKSEMPYGSYG--FVERETTLIG------SLTVREYLYYSALLQLPGF 214
Y G+V ++G +P Y ++ R+ L+G S +VRE + Y L P
Sbjct: 531 YQPTGGQVLLDG----VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAY-GLTDTP-- 583
Query: 215 FCQRKNVVEDAIHAMSLSDYANKLIGG-------HCYMKG--LPCGERRRVRIARELVMR 265
++ I A + + A+ I KG L G+++R+ IAR LV +
Sbjct: 584 --------DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635
Query: 266 PHVLFIDEPLYHLDS 280
P VL +DE LD+
Sbjct: 636 PRVLILDEATSALDA 650
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 28/195 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
G++ I+G GK++L+ A+ G L H+ V + G+ + +P S+ F
Sbjct: 643 GSLVAIVGGTGEGKTSLISAMLGELSHAET--SSVVIRGSVAYVPQVSWIF--------- 691
Query: 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK------GLP 249
+ TVRE + + + + ++ AI +L + L+ G + +
Sbjct: 692 NATVRENILFGSDFESERYW--------RAIDVTALQ-HDLDLLPGRDLTEIGERGVNIS 742
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309
G+++RV +AR + + D+PL LD+ A + + K G T + NQ
Sbjct: 743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQ--L 800
Query: 310 EVFGLFDRICLLSNG 324
L DRI L+S G
Sbjct: 801 HFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 26/201 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG------AKSEMPYG--SYGF 186
G + ++G + +GKSTL+R + P S G V V+G + SE+ G
Sbjct: 31 GQIYGVIGASGAGKSTLIRCVNLLERPTS----GSVIVDGQDLTTLSNSELTKARRQIGM 86
Query: 187 VERETTLIGSLTVREYLYYSAL-LQLPGFFCQR-KNVVEDAIHAMSLSDYANKLIGGHCY 244
+ + L+ S TV + AL L+L K V + + + L D + Y
Sbjct: 87 IFQHFNLLSSRTVFGNV---ALPLELDNTPKDEIKRKVTELLALVGLGDKHDS------Y 137
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT 303
L G+++RV IAR L P VL DE LD + ++ LK++ G T+L
Sbjct: 138 PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL- 196
Query: 304 INQSSTEVFGLFDRICLLSNG 324
I V + D + ++SNG
Sbjct: 197 ITHEMDVVKRICDCVAVISNG 217
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 31/157 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK-SEMPYGSY----GFVE 188
G +I GP+ GKSTLL+ +A + P S G + G S + Y +
Sbjct: 32 AGEFKLITGPSGCGKSTLLKIVASLISPTS----GTLLFEGEDISTLKPEIYRQQVSYCA 87
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA------NKLIGGH 242
+ TL G TV + L + + R + AI L +A K I
Sbjct: 88 QTPTLFGD-TVYDNLIFPWQI--------RNQQPDPAIFLDDLERFALPDTILTKNI--- 135
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
L GE++R+ + R L P VL +DE LD
Sbjct: 136 ---AELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 46/207 (22%), Positives = 70/207 (33%), Gaps = 35/207 (16%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS-----YGFVERETTLIG 195
++GP +GKSTLL +AG S G + G E + ++ ++ T
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSGS----GSIQFAGQPLEAWSATELARHRAYLSQQQTPPF 85
Query: 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG---HCYMKGLPCGE 252
++ V YL D L+D A L L GE
Sbjct: 86 AMPVWHYLTLH---------------QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGE 130
Query: 253 RRRVRIAREL-----VMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
+RVR+A + P +L +DEP+ LD + L L G ++ + +
Sbjct: 131 WQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMS-S 189
Query: 306 QSSTEVFGLFDRICLLSNGNTLFFGET 332
R LL G L G
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLLASGRR 216
|
Length = 248 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 51/216 (23%), Positives = 83/216 (38%), Gaps = 53/216 (24%)
Query: 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
++ + +++ T + Y + + N G I+G SGKSTL++ I L +
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT- 60
Query: 165 RMYGEVFVNG----AKSEMPY-----GSYGFVER--ETTLIGSLTVREYLY--------- 204
G V V+ K++ Y G V + E+ L RE ++
Sbjct: 61 --TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNL 118
Query: 205 -------YSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257
+ L+ L GF ++V MS S + M G G+ R++
Sbjct: 119 DEVKNYAHRLLMDL-GF---SRDV-------MSQSPFQ---------MSG---GQMRKIA 155
Query: 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
I L M P ++ +DEP LD S +M LK L
Sbjct: 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191
|
Length = 286 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.96 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.95 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.95 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.95 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.94 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.94 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.94 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.93 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.93 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.93 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.92 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.92 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.9 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.9 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.89 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.87 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.87 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.86 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.85 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.85 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.85 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.85 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.82 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.82 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.81 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.8 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.79 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.78 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.78 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.78 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.77 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.76 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.75 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.75 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.75 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.71 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.67 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.67 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.64 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.59 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.54 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.48 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.46 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.45 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.44 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.44 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.37 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.36 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.34 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.33 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.31 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.3 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.3 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.29 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.28 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.27 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.27 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.23 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.23 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.2 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.18 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.16 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.16 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.15 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.12 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.12 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.1 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.09 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.06 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.03 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.97 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.96 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.95 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.87 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.85 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.84 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.84 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.82 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.81 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.73 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.73 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.72 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.64 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.61 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.59 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.57 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.56 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.54 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.5 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.48 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.48 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.45 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.43 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.42 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.36 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.35 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.28 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.27 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.26 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.23 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.17 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.16 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.15 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.13 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.09 | |
| PRK13764 | 602 | ATPase; Provisional | 98.07 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.07 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.03 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.03 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.01 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 98.0 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.97 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 97.97 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 97.94 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.93 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.92 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 97.92 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.91 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 97.9 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.88 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 97.87 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 97.87 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.87 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-70 Score=598.42 Aligned_cols=388 Identities=35% Similarity=0.569 Sum_probs=326.9
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP 180 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~ 180 (513)
+..+.|+|++++.+++....+++|+|||+.++|||++||||||||||||||++|+|+.+.+...+|+|++||++.. ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~ 102 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSF 102 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhh
Confidence 4578999999988655334678999999999999999999999999999999999998875567999999996532 33
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
++.+|||.|+|.++|.+||+|+|.|.+.+++|.. ..+++++|+++++.+||.+++|+++| +...+++||||||||+|
T Consensus 103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig-~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIG-NPGIRGLSGGERKRVSI 181 (613)
T ss_pred hheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceec-CCCCCccccchhhHHHH
Confidence 5678999999999999999999999999999873 36788899999999999999999997 55559999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (513)
|.+|++||.||||||||||||+.++.++++.|++++++|+|||+|+|||+.+++++||++++|.+|+++|+|++.++.++
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~f 261 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEF 261 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred hHhcCCCCCCCCCchHHHHHHhhcc--hhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHh-cCHHHHHHHHHHHhh
Q 010314 339 FSNAGFPCPIMQSPSDHFLRAINTD--FDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQ-SSADAAAVETMILRL 415 (513)
Q Consensus 339 f~~~g~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~s~~~~~~~~~~~~~ 415 (513)
|++.|++||...||+|+++++++.+ .+.... ..+.......++ .....+.........
T Consensus 262 f~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (613)
T KOG0061|consen 262 FSSLGFPCPELENPADFLLDLLSVDSGTRELEE-------------------AVRIAKLINKFSQTDNLKKTLEALEKSL 322 (613)
T ss_pred HHhCCCCCCCcCChHHHHHHHHccCCCchhHHh-------------------HHHHHHHhhhccccchhhhhHHHHhhhc
Confidence 9999999999999999999988743 111110 011111111222 111111111001111
Q ss_pred hhccCCCccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 010314 416 TEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFN 495 (513)
Q Consensus 416 ~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~~~~~~r~g~lf~~~~~~ 495 (513)
... ...+.....+||.|++.|++|.+++++|||.+.+.|+++.+++|+++|++||+++++..++++|.|++||.+.+.
T Consensus 323 ~~~--~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~ 400 (613)
T KOG0061|consen 323 STS--KKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFM 400 (613)
T ss_pred ccc--cccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHH
Confidence 111 111112278999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hHHHHHHHhcC
Q 010314 496 SLLNIA-GVPALMKEIKV 512 (513)
Q Consensus 496 ~~~~~~-~vp~~~~e~~~ 512 (513)
.|.++. +++.|..||++
T Consensus 401 ~f~~~~~~i~~f~~e~~~ 418 (613)
T KOG0061|consen 401 TFLSMFGAVPVFPQERPI 418 (613)
T ss_pred HHHHHHhHHHHhHHHHHH
Confidence 998887 59999999875
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-69 Score=610.47 Aligned_cols=381 Identities=28% Similarity=0.450 Sum_probs=336.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCC
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPY 181 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~ 181 (513)
....|+|+.++.+.+. ..+++|+||++.++||.++||||+|||||||||++|+|+... +.++|+|+++|.+.. ...
T Consensus 786 ~V~~w~dl~~~~~~qG-~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG-GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFA 863 (1391)
T ss_pred ceEEEEeCCccccccc-cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhc
Confidence 4678899988886543 567899999999999999999999999999999999999643 468999999998754 345
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch--hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~--~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
|.+|||.|+|.|.+.+||+|.|.|+|.+|+|... .++.+.|+++++.++|++++|.+|| .+. .|||.+||||++||
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG-~~G-~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVG-LPG-SGLSTEQRKRLTIG 941 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhcc-CCC-CCCCHHHhceeeEE
Confidence 7899999999999999999999999999988754 4556889999999999999999997 655 89999999999999
Q ss_pred HHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe-CCeEEEEeChHH---
Q 010314 260 RELVMRP-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFGETLA--- 334 (513)
Q Consensus 260 raL~~~P-~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~G~~~~--- 334 (513)
.+|+.+| .||||||||||||+.++..|++++|++++.|+|||||||||+..+++.||++++|+ +|++||+|+..+
T Consensus 942 VELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~ 1021 (1391)
T KOG0065|consen 942 VELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSS 1021 (1391)
T ss_pred EEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccH
Confidence 9999999 89999999999999999999999999999999999999999999999999999996 689999998754
Q ss_pred -HHHHhHhcC-CCCCCCCCchHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCHHHHHHHHHH
Q 010314 335 -CLQHFSNAG-FPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412 (513)
Q Consensus 335 -~~~~f~~~g-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~ 412 (513)
+++||++.| .+|+...||+++++++++...... .. .++.+.|++|.+++++.+++
T Consensus 1022 ~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~----------------~~-------~D~a~~w~~S~e~k~~~e~v 1078 (1391)
T KOG0065|consen 1022 KLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS----------------LS-------VDFAEIWKNSEEYKRNKELV 1078 (1391)
T ss_pred HHHHHHHhcCCccCCCCCChHHHHHhhcccccccc----------------cC-------ccHHHHHhccHHHHHHHHHH
Confidence 567999975 899999999999999876541110 01 14667799999999998888
Q ss_pred Hhhhhcc-----CCCccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010314 413 LRLTEKE-----GPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAA 487 (513)
Q Consensus 413 ~~~~~~~-----~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~~~~~~r~g~ 487 (513)
.++.+.. +..++++|++|+|.|++.|+||+++.+||+|.|+++|++++++.||+||+.||++|++..++||.+|+
T Consensus 1079 ~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a 1158 (1391)
T KOG0065|consen 1079 KELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGA 1158 (1391)
T ss_pred HHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHH
Confidence 8765432 22344669999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhc
Q 010314 488 IFVFVSFNSLLNIAGVPALMKEIK 511 (513)
Q Consensus 488 lf~~~~~~~~~~~~~vp~~~~e~~ 511 (513)
+|.+++|.+-++.+.+|.+++-|.
T Consensus 1159 ~yma~v~~~~~~~~~~~~~v~~e~ 1182 (1391)
T KOG0065|consen 1159 AYMATVFSGPNNNQLQQPAVATER 1182 (1391)
T ss_pred HHHHHHHhhhhhhhhhhhHHhhhh
Confidence 999999999999888888876553
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-64 Score=558.08 Aligned_cols=390 Identities=27% Similarity=0.433 Sum_probs=309.8
Q ss_pred CceEEEEeEEEEEeccc------------------------cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 103 GASVVWKDLTVTIKGKR------------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~------------------------~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
...+++.|++++....+ ..++.+|+|||+++++||++||+|||||||||||++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 45678888887764221 124679999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEECCEeCCC-CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHcCChhHH
Q 010314 159 RLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYA 235 (513)
Q Consensus 159 ~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~~~L~~~~ 235 (513)
+.+++. .+|+|.+||++... ..+.++||+|++.+++.+||+||+.+.+.++.+.. .++..++++++++.+||.++.
T Consensus 117 ~~~~~~-~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNN-FTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCc-eeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 988752 46999999987532 23569999999999999999999999877665432 133456789999999999999
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcC
Q 010314 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (513)
Q Consensus 236 ~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (513)
++.++ +..+++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++..+++++|
T Consensus 196 ~t~vg-~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 196 NTIIG-NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred CceeC-CCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99886 66788999999999999999999999999999999999999999999999998889999999999976789999
Q ss_pred CEEEEEeCCeEEEEeChHHHHHHhHhcCCCCCCCCCchHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHH
Q 010314 316 DRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTL 395 (513)
Q Consensus 316 D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (513)
|++++|++|++++.|+++++.++|++.|++||...||+|++++.+..+.... +.. +.+.....+.+
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~--------~~~------~~~~~~~~~~l 340 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD--------GVS------EREKPNVKQSL 340 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCC--------Ccc------ccccchHHHHH
Confidence 9999999999999999999999999999999999999999998876432100 000 00000111233
Q ss_pred HHHHhcCHHHHHHHHHHHh--hhh----------ccCC-CccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHH
Q 010314 396 EATYQSSADAAAVETMILR--LTE----------KEGP-FLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMI 462 (513)
Q Consensus 396 ~~~~~~s~~~~~~~~~~~~--~~~----------~~~~-~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~ 462 (513)
...|++... +...+.+.. ... .+.. .....+..+||+|+.+|++|++++ |||+.+.++|++++++
T Consensus 341 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~ 418 (659)
T PLN03211 341 VASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIA 418 (659)
T ss_pred HHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHH
Confidence 444532111 111101000 000 0000 011225578999999999999998 8999999999999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhcC
Q 010314 463 LTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLN-IAGVPALMKEIKV 512 (513)
Q Consensus 463 ~~liiG~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~~-~~~vp~~~~e~~~ 512 (513)
+|+++|++||+++ ..++++|.|++||++++.++.+ +..++.|..||.|
T Consensus 419 ~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v 467 (659)
T PLN03211 419 AALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAI 467 (659)
T ss_pred HHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999985 6789999999999999977654 5788888888865
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=561.33 Aligned_cols=374 Identities=29% Similarity=0.440 Sum_probs=315.5
Q ss_pred ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCcccCCCCC
Q 010314 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (513)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (513)
..+.+|+|+|+.+++||++||+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35679999999999999999999999999999999999987753457999999987532 2356899999999999999
Q ss_pred HHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 199 VREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 199 V~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
|+|||.|++.++.+.. ..+++++++++++.+||.+++|+.+|+....++|||||||||+||++|+.+|+||||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 9999999988776542 23456679999999999999999997322467899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHhHhcCCCCCCCCCchHHH
Q 010314 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~ 356 (513)
|||+.++..+++.|++++++|+|||+++||+..+++++||++++|++|++++.|+++++.++|++.|++||...||+|++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998789999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCHHHHHHHHHHHhhhhc-------cCCCccCCCCC
Q 010314 357 LRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEK-------EGPFLKSKGKA 429 (513)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 429 (513)
++.+..+... ........+.+.+.|+.+..+.+..+........ ........+..
T Consensus 276 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (617)
T TIGR00955 276 VQVLAVIPGS------------------ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNA 337 (617)
T ss_pred HHHhhcCccc------------------ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCC
Confidence 8876543110 0111234456667777766555444333211110 00111235678
Q ss_pred CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHH
Q 010314 430 SSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNI-AGVPALMK 508 (513)
Q Consensus 430 s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~~~-~~vp~~~~ 508 (513)
+|+.|+.+|++|+++.+||||.++++|+++.+++|+++|++||+++++..++++|.|++|+++++++|.++ ..++.|..
T Consensus 338 ~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~ 417 (617)
T TIGR00955 338 SWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTA 417 (617)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875 55788888
Q ss_pred HhcC
Q 010314 509 EIKV 512 (513)
Q Consensus 509 e~~~ 512 (513)
||.|
T Consensus 418 er~v 421 (617)
T TIGR00955 418 ELPV 421 (617)
T ss_pred HHHH
Confidence 8864
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-64 Score=593.90 Aligned_cols=385 Identities=24% Similarity=0.383 Sum_probs=322.3
Q ss_pred CceEEEEeEEEEEeccc--------cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 010314 103 GASVVWKDLTVTIKGKR--------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~--------~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (513)
+..+.|+||++.++.+. ...+.+|+|||+.+++|+++||+|||||||||||++|+|+.+++ ..+|+|.++|
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 34799999999985321 12457999999999999999999999999999999999997543 3579999999
Q ss_pred EeCCC--CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH
Q 010314 175 AKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 175 ~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG 250 (513)
.+... ..+.+|||+|++.+++.+||+|+|.|++.++.+.. ..++.+.++++++.++|.+++++.+| .+.+++|||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg-~~~~~~LSg 1022 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVG-LPGVTGLST 1022 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccC-CCCCCCcCH
Confidence 76432 23568999999999999999999999987776532 13445679999999999999999886 555689999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC-CeEEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFF 329 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv~~ 329 (513)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++||+..+++++||++++|++ |+++++
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999988999999999998778999999999996 899999
Q ss_pred eCh----HHHHHHhHhc-CCC-CCCCCCchHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCH
Q 010314 330 GET----LACLQHFSNA-GFP-CPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSA 403 (513)
Q Consensus 330 G~~----~~~~~~f~~~-g~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ 403 (513)
|++ .++.+||+++ |.+ ||...||+|++++.+..+.... ...++.+.|+.|.
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~-----------------------~~~d~~~~~~~s~ 1159 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVK-----------------------LGIDFAEHYKSSS 1159 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhccccccc-----------------------ccchHHHHHhccH
Confidence 996 5789999997 664 9999999999998765321100 0124667788888
Q ss_pred HHHHHHHHHHhhhhc----cCCCccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCCh-
Q 010314 404 DAAAVETMILRLTEK----EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL- 478 (513)
Q Consensus 404 ~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~- 478 (513)
.++.+.+.+...... .+.....++..+||+|+++|+||+++++||||.|+++|+++++++||++|++||+++++.
T Consensus 1160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~ 1239 (1470)
T PLN03140 1160 LYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRS 1239 (1470)
T ss_pred HHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 877766655543321 112234568999999999999999999999999999999999999999999999999875
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhcC
Q 010314 479 --SSVVTRVAAIFVFVSFNSLLNIA-GVPALMKEIKV 512 (513)
Q Consensus 479 --~~~~~r~g~lf~~~~~~~~~~~~-~vp~~~~e~~~ 512 (513)
.++++++|++|++++|+++.++. .+|.|..||.|
T Consensus 1240 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~v 1276 (1470)
T PLN03140 1240 NANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTV 1276 (1470)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999997764 46888888864
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=592.38 Aligned_cols=377 Identities=24% Similarity=0.335 Sum_probs=313.5
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC----CCceEEEEcCCcccCCC
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGS 196 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~ 196 (513)
.+++|+|||+.+++||+++|+||||||||||||+|+|+.++. ...+|+|.+||.+... .++.++|++|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 356999999999999999999999999999999999996321 1246999999986421 23459999999999999
Q ss_pred CCHHHHHHHHHHhcCCC------chhhHHHH-HHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 010314 197 LTVREYLYYSALLQLPG------FFCQRKNV-VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL 269 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~------~~~~~~~~-v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iL 269 (513)
+||+|+|.|++.++.+. ...+..++ ++++++.+||.+++++.+| +..+++|||||||||+||++|+.+|+||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg-~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVG-NDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeC-CCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 99999999988776532 11222223 4678999999999999996 7789999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHhHhcCCCCCC
Q 010314 270 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPI 348 (513)
Q Consensus 270 llDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~ 348 (513)
||||||+|||+.++..+++.|++++++ |+|||+++||+..+++++||+|++|++|+++++|+++++.+||+++|++||.
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999864 9999999999988999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCHHHHHHHHHHHhhhhc----------
Q 010314 349 MQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEK---------- 418 (513)
Q Consensus 349 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~---------- 418 (513)
..||+|++++..+.+ .+.. ...+... .....+++...|+.|..++.+.+.+......
T Consensus 312 ~~n~aDfl~~~~~~~-~~~~--~~~~e~~----------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1394)
T TIGR00956 312 RQTTADFLTSLTSPA-ERQI--KPGYEKK----------VPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAY 378 (1394)
T ss_pred CCChHHHHHhccChh-hhhc--ccccccc----------CCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHH
Confidence 999999888765433 2211 0111110 0012346777788887766554443321100
Q ss_pred ---------cCCCccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010314 419 ---------EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIF 489 (513)
Q Consensus 419 ---------~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~~~~~~r~g~lf 489 (513)
........+..|+|.|+++|++|+++++||||.++++|+++++++||++|++||+++++.+++++|.|++|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf 458 (1394)
T TIGR00956 379 RESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALF 458 (1394)
T ss_pred HHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Confidence 00111235788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcC
Q 010314 490 VFVSFNSLLNIAGVPALMKEIKV 512 (513)
Q Consensus 490 ~~~~~~~~~~~~~vp~~~~e~~~ 512 (513)
|+++|++|+++.+++.++.||.|
T Consensus 459 ~~~~~~~~~~~~~i~~~~~eR~i 481 (1394)
T TIGR00956 459 FAILFNAFSSLLEIASMYEARPI 481 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999976
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=583.88 Aligned_cols=382 Identities=29% Similarity=0.467 Sum_probs=319.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCc
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYG 182 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~ 182 (513)
..++|+||+++++.+ ...+.+|+|||+.+++||++||+|||||||||||++|+|+.++....+|+|.+||++... .++
T Consensus 758 ~~l~~~nl~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCC-CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 458999999998532 134679999999999999999999999999999999999987432235999999987632 245
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.++||+|++.+++.+||+|||.+++.++.+.. ..++.++++++++.++|.+++|+.++ . ...+|||||||||+||+
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~-~-~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG-V-PGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeC-C-CCCCCCHHHhhHHHHHH
Confidence 79999999999999999999999987775432 13455679999999999999999886 2 22389999999999999
Q ss_pred HHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC-eEEEEeCh----HH
Q 010314 261 ELVMRPH-VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG-NTLFFGET----LA 334 (513)
Q Consensus 261 aL~~~P~-iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G-~iv~~G~~----~~ 334 (513)
||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++||+...+++.||++++|++| +++++|++ .+
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~ 994 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHT 994 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccch
Confidence 9999997 999999999999999999999999998889999999999987678899999999987 99999997 56
Q ss_pred HHHHhHhcCC-CCCCCCCchHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCHHHHHHHHHHH
Q 010314 335 CLQHFSNAGF-PCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMIL 413 (513)
Q Consensus 335 ~~~~f~~~g~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~ 413 (513)
+.+||+..|+ +||...||+|++++.+....... ..+++.+.|+.+...+.+.+.+.
T Consensus 995 ~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~-----------------------~~~~~~~~~~~s~~~~~~~~~~~ 1051 (1394)
T TIGR00956 995 IINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH-----------------------ANQDYHEVWRNSSEYQAVKNELD 1051 (1394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc-----------------------hhccHHHHHhcCHHHHHHHHHHH
Confidence 7899999996 89999999999998875431100 01234556777776655544443
Q ss_pred hhhhc----cCC---CccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 010314 414 RLTEK----EGP---FLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVA 486 (513)
Q Consensus 414 ~~~~~----~~~---~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~~~~~~r~g 486 (513)
..... ... ....+++.|||.|+++|++|+++++||||.++++|+++++++||++|++||+++++..++++|.|
T Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g 1131 (1394)
T TIGR00956 1052 RLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMF 1131 (1394)
T ss_pred HhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 32211 010 11135889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhc
Q 010314 487 AIFVFVSFNSLLNIAGVPALMKEIK 511 (513)
Q Consensus 487 ~lf~~~~~~~~~~~~~vp~~~~e~~ 511 (513)
++|+.+++.++.....+|.|+.||.
T Consensus 1132 ~~f~~~~~~~~~~~~~~~~f~~~r~ 1156 (1394)
T TIGR00956 1132 AVFMATVLFNPLIQQYLPPFVAQRD 1156 (1394)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999998888888999888875
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-61 Score=571.31 Aligned_cols=379 Identities=23% Similarity=0.378 Sum_probs=311.7
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCcccCCCCCH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (513)
.+.+|+||||.++|||+++|+||||||||||||+|+|+++++...+|+|.+||.+... .++.++|++|++.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 4569999999999999999999999999999999999998864457999999987532 24579999999999999999
Q ss_pred HHHHHHHHHhcCCCc---------hhhH------------------------HHHHHHHHHHcCChhHHhhhhcCCCCCC
Q 010314 200 REYLYYSALLQLPGF---------FCQR------------------------KNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~---------~~~~------------------------~~~v~~~l~~~~L~~~~~~~vg~~~~~~ 246 (513)
+|||.|++.++.+.. ..++ ...++++++.+||.+++|+.+| +..++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg-~~~~r 335 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG-DEMIR 335 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC-Ccccc
Confidence 999999887652210 0110 1135779999999999999986 77889
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|+|+++||+..+++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999999986 589999999999889999999999999999
Q ss_pred EEEEeChHHHHHHhHhcCCCCCCCCCchHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCHHH
Q 010314 326 TLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADA 405 (513)
Q Consensus 326 iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~ 405 (513)
++++|+++++.+||+++|++||...||+|++++..+....+. .|... ..+. .....+++.+.|+++..+
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~-----~~~~~--~~p~----~~~~~~~~~~~~~~s~~~ 484 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ-----YWADR--NKPY----RYISVSEFAERFKSFHVG 484 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh-----hhhcc--CCcc----ccCCHHHHHHHHHhcHHH
Confidence 999999999999999999999999999998887665321111 01100 0000 001234678889988877
Q ss_pred HHHHHHHHhhhhc----cCCCccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCCh---
Q 010314 406 AAVETMILRLTEK----EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL--- 478 (513)
Q Consensus 406 ~~~~~~~~~~~~~----~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~--- 478 (513)
+.+.+.+...... ........|..+++.|+..|++|+++.+|||+.+++.|+++.+++|+++|++||+++.+.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~ 564 (1470)
T PLN03140 485 MQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNE 564 (1470)
T ss_pred HHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 6665544321111 111112458899999999999999999999999999999999999999999999997542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC
Q 010314 479 SSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512 (513)
Q Consensus 479 ~~~~~r~g~lf~~~~~~~~~~~~~vp~~~~e~~~ 512 (513)
.+.+.+.|++||++++++|+++++++.++.||.|
T Consensus 565 ~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~v 598 (1470)
T PLN03140 565 EDGALYIGALLFSMIINMFNGFAELALMIQRLPV 598 (1470)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3456788999999999999999999999998875
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=413.99 Aligned_cols=218 Identities=26% Similarity=0.348 Sum_probs=195.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||+++| +...+|+|||+++.+||+++|+||||||||||||||+|+.++++ |+|.++|.+...
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHH
Confidence 57999999999 45689999999999999999999999999999999999999985 999999975421
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.++.+|+|||+..|||++||.||+.++...-.....++.++...++|+.+||.+.++. ||.+|||||||||+|
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~------yP~qLSGGQqQRVAI 147 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA------YPAQLSGGQQQRVAI 147 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh------CccccCcHHHHHHHH
Confidence 2357999999999999999999999876543333335667788999999999998877 667999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+++++|||||+|||+...++++.+++|+++|.|.||+||.. ..+.+.+|||++|++|+++..|++++++.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999999999999999986 58999999999999999999999987653
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=479.17 Aligned_cols=377 Identities=28% Similarity=0.465 Sum_probs=320.1
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCcccCCCCCH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (513)
...+|+|+++.++||+++.++||.||||||||++|+|-++......|+|.+||.+.+. .++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 3479999999999999999999999999999999999987655457899999987432 34679999999999999999
Q ss_pred HHHHHHHHHhcCCCch---hhHHH----HHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 010314 200 REYLYYSALLQLPGFF---CQRKN----VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~~---~~~~~----~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllD 272 (513)
+|+|.|+++++.+... -.+++ ..+.+++.+||++++|+++| ++..+++||||||||+||.+++.+++++++|
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VG-nd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVG-NDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceec-ccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999877422 11222 46789999999999999996 9999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHhHhcCCCCCCCCC
Q 010314 273 EPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQS 351 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~ 351 (513)
|+|.|||+.++.++++.|+++++. +.|++++++|++++++++||+|++|.+|++||+|+.+++++||+++|+.||++.+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 999999999999999999999864 8999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCHHHHHHHHHHHhhhhcc----CCCccCCC
Q 010314 352 PSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE----GPFLKSKG 427 (513)
Q Consensus 352 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~~~ 427 (513)
++|++.+..... + ..+-|....... ......++.+.|.+++.+.++...+.....+. ......+|
T Consensus 366 ~ADfLt~vts~k-~----~~~~~~~~~~~~------~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y 434 (1391)
T KOG0065|consen 366 TADFLTEVTSKK-D----QEQYWNKRSKPY------PYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKY 434 (1391)
T ss_pred HHHHHHHhhcCc-c----ccccccccCCCc------ccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCce
Confidence 999766655411 1 011111110001 11123568888999999988776665433221 12223568
Q ss_pred CCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 010314 428 KASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLG-HSLSSVVTRVAAIFVFVSFNSLLNIAGVPAL 506 (513)
Q Consensus 428 ~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~-~~~~~~~~r~g~lf~~~~~~~~~~~~~vp~~ 506 (513)
..++|.|+++|+.|.|+.+.||..++..++++.+++|+|+|++||+.+ .+..+.+.|+|++||+++|.+|+++++++..
T Consensus 435 ~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~ 514 (1391)
T KOG0065|consen 435 SVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALT 514 (1391)
T ss_pred eccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 7778899999999999999999999999777
Q ss_pred HHHh
Q 010314 507 MKEI 510 (513)
Q Consensus 507 ~~e~ 510 (513)
++.|
T Consensus 515 ~~~~ 518 (1391)
T KOG0065|consen 515 FQRL 518 (1391)
T ss_pred Hhhc
Confidence 7655
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=398.75 Aligned_cols=226 Identities=25% Similarity=0.424 Sum_probs=201.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++|+|+++.|. .+.+++|+|++|++||+++++|||||||||+||+|.+++.|++ |+|+++|+++...
T Consensus 2 I~~~nvsk~y~-----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~---G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 2 IEFENVSKRYG-----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDGEDISDLDPVEL 73 (309)
T ss_pred ceeeeeehhcC-----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCC---ceEEECCeecccCCHHHH
Confidence 68999999994 5679999999999999999999999999999999999999985 9999999986432
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh--HHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
++.+|||-|...|||++||.||+.+-..+.... .++.+++++|+|+.+||+. ++++ ||++|||||+|||.+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~-k~~i~~r~~ELl~lvgL~p~~~~~R------yP~eLSGGQQQRVGv 146 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD-KERIKKRADELLDLVGLDPSEYADR------YPHELSGGQQQRVGV 146 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCC-HHHHHHHHHHHHHHhCCCHHHHhhc------CchhcCcchhhHHHH
Confidence 467999999999999999999998876654332 2456788999999999974 6666 778999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+||+||||+++|||.++.++-+.++++.++ |+|||++||+. ++++.++|||++|++|+++.+++|++++.
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999865 99999998886 68999999999999999999999999874
Q ss_pred HhHhcCCCCCCCCCchHHHHHHh
Q 010314 338 HFSNAGFPCPIMQSPSDHFLRAI 360 (513)
Q Consensus 338 ~f~~~g~~~~~~~~~~d~~~~~~ 360 (513)
+|++.|+..+
T Consensus 226 -------------~Pan~FV~~f 235 (309)
T COG1125 226 -------------NPANDFVEDF 235 (309)
T ss_pred -------------CccHHHHHHH
Confidence 5666676654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-52 Score=406.53 Aligned_cols=221 Identities=25% Similarity=0.310 Sum_probs=197.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++++++.|..+......+|+|||++|++||++||+|.||||||||+|||.++..|++ |+|.++|.++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pts---G~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS---GSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---ceEEEcCEecccCChHHH
Confidence 68999999997543334579999999999999999999999999999999999999985 999999976432
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.++.||++||+..|+...||.||+.|+..+... ..++.+++|.++|+.+||.+.+++ ||.+|||||||||+
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~-~k~ei~~RV~elLelVgL~dk~~~------yP~qLSGGQKQRVa 151 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV-PKAEIKQRVAELLELVGLSDKADR------YPAQLSGGQKQRVA 151 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhcCC-CHHHHHHHHHHHHHHcCChhhhcc------CchhcCcchhhHHH
Confidence 246799999999999999999999999876542 235778899999999999988776 66799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+|||+|||||+|||.+...|+++|+++.++ |.||++++|++ +.+.++||||.+|++|++++.|+..+++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999999865 99999999886 6899999999999999999999998876
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 231 ~ 231 (339)
T COG1135 231 A 231 (339)
T ss_pred c
Confidence 4
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-51 Score=392.86 Aligned_cols=204 Identities=30% Similarity=0.411 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.+.++++++.|. ...+|+|+|++|.+||+++|+||||||||||||+|+|+.+|++ |+|.++|++...+...+
T Consensus 3 ~l~i~~v~~~f~-----~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~---G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFG-----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEeC-----ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCcccCCCCCCE
Confidence 589999999995 3679999999999999999999999999999999999999985 99999999876666789
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
+||||++.|+|.+||.||+.++...... ...+..+++.++|+.+||.++.++ ||++|||||||||+|||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~-~~~e~~~~a~~~L~~VgL~~~~~~------~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGK-SKAEARERAKELLELVGLAGFEDK------YPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhcccc-chHhHHHHHHHHHHHcCCcchhhc------CccccChHHHHHHHHHHHHhc
Confidence 9999999999999999999998766531 223556689999999999999887 677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
+|+||+||||+++||+.++..+.+.|.++.+ .++|||++||+. +|+..++|||++|.++
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999975 589999998887 6888999999999984
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=386.35 Aligned_cols=220 Identities=25% Similarity=0.358 Sum_probs=194.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...+++++|+++| +.+.|++||+++|++||+++||||||||||||||+|.|+++|+. |+|+++|.++..
T Consensus 6 ~~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~---GeI~i~G~~i~~ls~ 77 (263)
T COG1127 6 EPLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK---GEILIDGEDIPQLSE 77 (263)
T ss_pred cceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCC---CeEEEcCcchhccCH
Confidence 3579999999998 45689999999999999999999999999999999999999985 999999987432
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqr 253 (513)
.++++|++||...||..+||.||+.|+.+-.........++.+..-|+.+||... ++. +|.+|||||+
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~------~PsELSGGM~ 151 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL------YPSELSGGMR 151 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh------CchhhcchHH
Confidence 1356999999999999999999999876533222223566778888999999876 555 6679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||++|||||+.+|+|||+||||+||||.++..+-++|++|++. |.|++++|||. +.++.+|||+++|.+|++++.|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999999999999999876 99999999987 589999999999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
+++..
T Consensus 231 ~el~~ 235 (263)
T COG1127 231 EELLA 235 (263)
T ss_pred HHHHh
Confidence 98764
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=394.01 Aligned_cols=217 Identities=27% Similarity=0.385 Sum_probs=191.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|. ++.+|+|+||++++|++++|+||||||||||||+|+|+++|.. |+|+++|+++..
T Consensus 2 ~L~~~~ls~~y~-----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~---G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGYG-----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEEC-----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCCchhhcCHHH
Confidence 589999999994 5689999999999999999999999999999999999999975 999999987543
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC---CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++||||.......+||+|.+.++..-+. .....+..+.++++|+.+|+.+++++.+. +|||||||||
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~------~LSGGerQrv 147 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD------ELSGGERQRV 147 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc------ccChhHHHHH
Confidence 23679999999888889999999987632111 11112344579999999999999999765 9999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
.|||||+.+|+||||||||++||..++.+++++++++++ +|+|||+++|++ ..+.++||++++|++|++++.|+|+++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchh
Confidence 999999999999999999999999999999999999985 599999999987 589999999999999999999999887
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
+
T Consensus 227 l 227 (258)
T COG1120 227 L 227 (258)
T ss_pred c
Confidence 5
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=409.89 Aligned_cols=219 Identities=26% Similarity=0.395 Sum_probs=198.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (513)
..++++||++.|. ...+|+|+|++|++||+++|+||||||||||||+|+|+..|++ |+|.++|+++.. .
T Consensus 4 ~~l~i~~v~k~yg-----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~---G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSFG-----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeecC-----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChh
Confidence 4789999999993 5679999999999999999999999999999999999999986 999999998542 3
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.+|+|||+..|||+|||+||+.|+..++.....++.++++.++++.++|.++.+++ |++|||||||||+|||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~------p~qLSGGQqQRVALAR 149 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK------PHQLSGGQQQRVALAR 149 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC------hhhhChHHHHHHHHHH
Confidence 5789999999999999999999999987443222245778999999999999998884 5599999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||+.+|+|||||||.|+||...+.++...|+++.++ |.|.|++||+. +++..++|||++|++|++.-.|+|+++..
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHhh
Confidence 999999999999999999999999999999999854 99999999887 68999999999999999999999999754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=400.41 Aligned_cols=221 Identities=29% Similarity=0.410 Sum_probs=196.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (513)
.+.++||++.|.. .+.+|+||||++++|+++||+||||||||||+|+|+|+++|++ |+|.++|.+... .
T Consensus 4 ~i~~~~l~k~~~~----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~---G~i~i~G~~~~~~~~~~ 76 (293)
T COG1131 4 VIEVRNLTKKYGG----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS---GEILVLGYDVVKEPAKV 76 (293)
T ss_pred eeeecceEEEeCC----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEEcCEeCccCHHHH
Confidence 5789999999941 4679999999999999999999999999999999999999975 999999987533 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
++.+||++|++.+++.+||+|||.|.+.++.... ...+++++++++.++|.+..++.++ +||+||||||+||+
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~------~lS~G~kqrl~ia~ 149 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK-EEAEERIEELLELFGLEDKANKKVR------TLSGGMKQRLSIAL 149 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHcCCchhhCcchh------hcCHHHHHHHHHHH
Confidence 3579999999999999999999999888775432 2456789999999999986666554 99999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
||+.+|+||||||||+||||.++..++++|++++++| +||++++|++ +++..+||+|++|++|+++++|++.++...+
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 9999999999999999999999999999999999887 7999988876 6899999999999999999999988876554
Q ss_pred H
Q 010314 340 S 340 (513)
Q Consensus 340 ~ 340 (513)
.
T Consensus 229 ~ 229 (293)
T COG1131 229 G 229 (293)
T ss_pred c
Confidence 3
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=380.73 Aligned_cols=209 Identities=29% Similarity=0.381 Sum_probs=181.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|..+... ..+|++|||.|++||+++|+|||||||||||++|.|+..|++ |.|.++|.+...
T Consensus 2 i~~~~v~k~y~~~~~~-~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~---G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGEK-VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCcc-eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEcCcCCHHHH
Confidence 5689999998654322 579999999999999999999999999999999999999975 999999976432
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
+++.+|||||+..|+|.+||.||+.+++.+..... ....+.++++++.+||.+..++ .+|.+|||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~-~~~~~~~~~l~~~lgl~~~~~~-----~~p~eLSGGqqQRV 151 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSA-GRRKRAAEELLEVLGLEDRLLK-----KKPSELSGGQQQRV 151 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCCh-hHHHHHHHHHHHhcCChhhhcc-----CCchhcCHHHHHHH
Confidence 23569999999999999999999998776543322 1456778999999999877652 25669999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
+|||||+.+|+|||+||||.+||+.+...|+++|++++++ |+|||++||++ .+...|||++.|.+|++
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999865 99999999986 67889999999999983
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=401.47 Aligned_cols=217 Identities=29% Similarity=0.420 Sum_probs=196.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|.+ ..+|+++|+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|++... ..
T Consensus 3 ~i~l~~v~K~yg~-----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~---G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSFGS-----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEcCC-----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhH
Confidence 6899999999842 229999999999999999999999999999999999999985 999999988643 34
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
|.+++|||+..|||+|||+||+.|+..++.-. ..+.+++|+++.+.++|.+++++++ .+|||||||||+||||
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~-k~ei~~rV~eva~~L~l~~lL~r~P------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVP-KAEIDKRVKEVAKLLGLEHLLNRKP------LQLSGGQRQRVALARA 147 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCc-hHHHHHHHHHHHHHcCChhHHhcCc------ccCChhhHHHHHHHHH
Confidence 78999999999999999999999998765322 2467889999999999999999854 5999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|++++||||+|+||+..+..+...|+++.++ |.|+|.+||+. .++..++|||++|++|++...|++.++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999865 89999988886 58999999999999999999999999865
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=376.49 Aligned_cols=220 Identities=29% Similarity=0.385 Sum_probs=193.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
+.++++||++.|+ .++++|+|||+.|++||++||+|+||||||||||+|+|+..++. |+|.++|.++..
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~---G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS---GEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc---ceEEecccchhccchH
Confidence 4789999999996 35689999999999999999999999999999999999999875 999999975421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCC-------chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCC
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG-------FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-------~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~L 248 (513)
.++.+||++|.+.|.+.++|.+|+..+..-+.+. ...+.+..+-++|+.+|+.+.+.++.+ .|
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~------~L 148 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS------TL 148 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc------cC
Confidence 2357999999999999999999998764322211 113455678899999999999888776 99
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
||||+|||+|||||+.+|+|||.|||+++|||.++..||+.|+++++ +|.|||+..|+. +.+.++||||+-|++|+++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999999985 599999999987 5889999999999999999
Q ss_pred EEeChHHHHH
Q 010314 328 FFGETLACLQ 337 (513)
Q Consensus 328 ~~G~~~~~~~ 337 (513)
|+|++.++-+
T Consensus 228 fDg~~~el~~ 237 (258)
T COG3638 228 FDGPASELTD 237 (258)
T ss_pred EeCChhhhhH
Confidence 9999988543
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=389.75 Aligned_cols=219 Identities=26% Similarity=0.384 Sum_probs=195.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~~- 179 (513)
|.+.++++++.+. ...+++||++.|+.||++||+|||||||||||++|+|+..|+. |.|.+||+ +...
T Consensus 1 m~i~i~~~~~~~~-----~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~---G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 1 MSIRINNVKKRFG-----AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLNGRVLFDVSNL 72 (345)
T ss_pred Cceeehhhhhhcc-----cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC---ceEEECCEeccchhcc
Confidence 4578888888874 4568999999999999999999999999999999999999986 99999998 4322
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..++||||+|+..+|++|||.+|+.|+...+.. ....+.+.++.++|+.+.|+++.++ ||.+|||||||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r------yP~QLSGGQrQRV 146 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR------YPAQLSGGQRQRV 146 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc------CchhcChHHHHHH
Confidence 346899999999999999999999999866521 1224577889999999999999887 6779999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
++||||+.+|++|+||||+++||...+.++.+.|+++.++ |.|+|++||+. +++.++||||++|++|+|...|+++++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999999876 99999988886 689999999999999999999999998
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
.+
T Consensus 226 ~~ 227 (345)
T COG1118 226 YD 227 (345)
T ss_pred hc
Confidence 65
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-49 Score=382.43 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=187.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--Y 181 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--~ 181 (513)
..++++|+++.|.+ . ++|+||||.+++|++++|+||||||||||+|+|+|+++|.. |+|.++|++.... .
T Consensus 3 ~~i~v~nl~v~y~~----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~---G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---GEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEECC----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---ceEEEccccccccccC
Confidence 46899999999952 2 59999999999999999999999999999999999999975 9999999875433 3
Q ss_pred ceEEEEcCCc---ccCCCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 182 GSYGFVERET---TLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 182 ~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..||||||.. .-|| +||+|.+..+...+.. ...+..++.++++|+.+|+.+++++.++ +|||||+||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~------~LSGGQ~QR 147 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG------ELSGGQKQR 147 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc------ccCcHHHHH
Confidence 5799999954 3343 6999999776332211 1113446789999999999999999887 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|.|||||+.+|++|+|||||+|+|+.++..|+++|++|+++|+||++++|+. ..+.++||+|+.|+ +++++.|+++++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 9999999999999999999999999999999999999998899999977776 68999999999995 678899999887
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 53
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-49 Score=374.83 Aligned_cols=220 Identities=25% Similarity=0.334 Sum_probs=190.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
+.++++||++.|..+.. ..++|++|||++.+||++||+|+||||||||.++|+|+.+|+. |+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~---G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---GSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---ceEEECCcccCccccc
Confidence 46899999999965432 2369999999999999999999999999999999999999975 999999976432
Q ss_pred --CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 --PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrq 254 (513)
.++.+.+|||++ .+.|..||++.|..+..... .....+++.++++.+||. .++++ +|++|||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~---~~~~~~~i~~~L~~VgL~~~~l~R------~P~eLSGGQ~Q 148 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG---LSKSQQRIAELLDQVGLPPSFLDR------RPHELSGGQRQ 148 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCC---ccHHHHHHHHHHHHcCCCHHHHhc------CchhcChhHHH
Confidence 246789999996 78999999999988765421 123345599999999996 56666 66799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||+|||||+.+|++||||||||+||+..+.+|+++|.+++++ +.|+|+++|+. ..+..+||||++|++|++|+.+++.
T Consensus 149 RiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 149 RIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechh
Confidence 999999999999999999999999999999999999999865 88999988775 6899999999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 228 ~l~~ 231 (252)
T COG1124 228 ELLS 231 (252)
T ss_pred hhhc
Confidence 8764
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=361.53 Aligned_cols=216 Identities=29% Similarity=0.385 Sum_probs=195.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
+++.+++++|+. ..++++||||+++.||++||+|||||||||+||+|++++.|++ |.|+++|.+... .+
T Consensus 2 l~v~~l~K~y~~----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~---G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYGS----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS---GKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhccC----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC---ceEEEeecccccChHHHh
Confidence 678999999953 3459999999999999999999999999999999999999986 999999976422 24
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
+.+|.++.+..++..||++|||.|.+.+. +.. .+.+++++++.+.++|.+++|++++ ++|.||||||+|||
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~--~~~kari~~l~k~l~l~~~~~rRv~------~~S~G~kqkV~iAR 146 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSR--KEIKARIAELSKRLQLLEYLDRRVG------EFSTGMKQKVAIAR 146 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHhChHHHHHHHHh------hhchhhHHHHHHHH
Confidence 67999998889999999999998887764 322 3567889999999999999999987 99999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||+++|++++|||||||||..+...+.+.+++++++|++||+++|.. .++..+||+|++|++|++|+.|+.+++..
T Consensus 147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999999999999999999988775 68999999999999999999999987654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=406.55 Aligned_cols=270 Identities=24% Similarity=0.295 Sum_probs=218.1
Q ss_pred eeEEecccccccccCCCCcchhhccCCCCCCCCCCcch--hhhhccCCceEEEEeEEEEEeccc------cccceeeeee
Q 010314 58 VRVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGA--AVARKIAGASVVWKDLTVTIKGKR------RYSDKVVKSS 129 (513)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~ls~~~~~~~------~~~~~iL~~v 129 (513)
-.++|.|++.+.+.+|.|||++.+.++.+......... ..........++++||++.|..++ .....+++||
T Consensus 231 G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~V 310 (539)
T COG1123 231 GEIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDV 310 (539)
T ss_pred CEEEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeee
Confidence 34799999999999999999999976533221110000 000000346789999999997532 2345799999
Q ss_pred eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------CCCce--EEEEcCCcccCCCCCHH
Q 010314 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-------MPYGS--YGFVERETTLIGSLTVR 200 (513)
Q Consensus 130 s~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-------~~~~~--~~yv~Q~~~l~~~lTV~ 200 (513)
||.+++||++||+|+||||||||.|+|+|+.+|++ |+|.++|.+.. ..++. +.|+.+...|.|.+||+
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~---G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~ 387 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVG 387 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHH
Confidence 99999999999999999999999999999999975 99999997621 11123 45555556899999999
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010314 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (513)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD 279 (513)
++|..+..........+.++++.++++.++|.. ++++ ||++||||||||++|||||+.+|++|++|||||+||
T Consensus 388 ~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r------yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLD 461 (539)
T COG1123 388 DILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR------YPHELSGGQRQRVAIARALALEPKLLILDEPVSALD 461 (539)
T ss_pred HHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc------CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccC
Confidence 999887765443333456678999999999985 5555 778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 280 SVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 280 ~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+..+.+|+++|++|+++ |.|.|+++|+. ..+..+||||++|++|++|+.|+.++++.
T Consensus 462 vsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 462 VSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 99999999999999865 99999988875 68999999999999999999998887754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-48 Score=362.23 Aligned_cols=222 Identities=25% Similarity=0.360 Sum_probs=194.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCCC-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEMP- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~~- 180 (513)
..++++||++.|. .+++|+|||+.|++++++|||||||||||||||+|..+.. +...++|+|.++|+++..+
T Consensus 6 ~~~~~~~l~~yYg-----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYYG-----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEEC-----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 4689999999994 5689999999999999999999999999999999998854 3345789999999886432
Q ss_pred ------CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHH
Q 010314 181 ------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 181 ------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqr 253 (513)
++++|+|||.+.-|| +|++||+.|+.++..... .+.++.|+..|+...|. +..|++ +..+.+|||||+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL---~~sa~~LSGGQQ 155 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRL---HKSALGLSGGQQ 155 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHh---hCCccCCChhHH
Confidence 367999999999998 899999999987764433 56678899999999996 456665 346779999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+|||.+..+|-++|.+|+ +.-|||++||.+ ..+.+++|+..++..|++|++|+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHH
Confidence 99999999999999999999999999999999999999998 568999888876 6899999999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 234 ~iF~ 237 (253)
T COG1117 234 KIFT 237 (253)
T ss_pred hhhc
Confidence 8753
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-47 Score=390.09 Aligned_cols=219 Identities=22% Similarity=0.291 Sum_probs=190.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|..+. ..+.+|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.++..
T Consensus 2 I~~~~lsk~y~~~~-~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~---G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQGT-KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS---GSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCCC-cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHHH
Confidence 78999999995321 12469999999999999999999999999999999999999975 999999987532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.++.++|++|+..+++.+||+||+.++...... ...+.++++.++++.+||.+..++. +.+|||||||||+
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~v~e~l~~vgL~~~~~~~------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEIKRKVTELLALVGLGDKHDSY------PSNLSGGQKQRVA 150 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhhCC------hhhCCHHHHHHHH
Confidence 134799999999999999999999887643211 1234556789999999999888774 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||++||+.++..++++|++++++ |.|||+++|+. +.+.++||+|++|++|++++.|++.+++
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 99999988886 5788999999999999999999998875
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-47 Score=385.12 Aligned_cols=218 Identities=27% Similarity=0.352 Sum_probs=192.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++||++.|. .+.+|+||||++++||++||+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 6 ~~i~i~~l~k~~~-----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~---G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 6 APIDFRNVEKRYG-----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA---GSISLCGEPVPSRARH 77 (306)
T ss_pred ceEEEEeEEEEEC-----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEecccchHH
Confidence 3689999999994 3569999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.++.+||++|++.+++.+||+||+.+.+.+... ...+..++++++++.++|.+..++.++ .|||||||||+||
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrl~la 150 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL-SAAAARALVPPLLEFAKLENKADAKVG------ELSGGMKRRLTLA 150 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchHhcCchh------hCCHHHHHHHHHH
Confidence 135799999999999999999999876554321 112344568899999999988888665 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+||+.+|++|||||||+|||+.++..++++|++++++|+|||+++|+. .++.++||+|++|++|++++.|+++++..
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999987799999988886 58999999999999999999999988754
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=390.48 Aligned_cols=218 Identities=24% Similarity=0.397 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|.+ .+.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.. ..
T Consensus 3 ~l~i~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYDG----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS---GEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeCC----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 4899999999831 3469999999999999999999999999999999999999975 999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++||+|++.+||++||+||+.|+...+.. ...+..++++++++.++|.++.++.+ ++|||||||||+||||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~QRvalARA 148 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGM-PKAEIEERVAEAARILELEPLLDRKP------RELSGGQRQRVAMGRA 148 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcCC-CHHHHHHHHHHHHHHcCChhHhhCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999988653321 11344567899999999999888754 5999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||++||+.++..+.+.|+++.++ |.|+|++||+. .++..+||++++|++|+++..|+++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999865 89999998887 58999999999999999999999988754
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=389.45 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|. .+.+|+|+||++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++... ..
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~---G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRFG-----AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEeC-----CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999994 3469999999999999999999999999999999999999975 999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|+..+||++||+||+.|+...+.. ...+.+++++++++.++|.++.++. +++|||||||||+||||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-~~~~~~~~~~~~l~~l~L~~~~~~~------~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGM-GRAEVAERVAELLDLVGLPGSERKY------PGQLSGGQQQRVALARA 148 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCchhhCC------hhhCCHHHHHHHHHHHH
Confidence 6799999999999999999999998654321 1234567899999999999988875 45999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999765 89999988887 58999999999999999999999988764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=368.58 Aligned_cols=216 Identities=26% Similarity=0.366 Sum_probs=185.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSFG-----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS---GEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccChhhH
Confidence 46899999984 3469999999999999999999999999999999999999875 999999986432
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+||.||+.+...........+..+++.++++.++|.+..++.+ .+|||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~ 146 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP------AELSGGMKKRVA 146 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHH
Confidence 134699999999999999999999876432211111233456888999999988777755 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999999999999999999864 89999988886 5788999999999999999999887653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=388.09 Aligned_cols=218 Identities=25% Similarity=0.432 Sum_probs=193.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (513)
..++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|.++.. .
T Consensus 5 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 5 NFVVLKNITKRFG-----SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE---GQIFIDGEDVTHRSIQ 76 (351)
T ss_pred cEEEEEeEEEEEC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHH
Confidence 3689999999994 3469999999999999999999999999999999999999975 999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++||+|+..+||++||+||+.|+...+.. ...+..++++++++.++|.++.++. +++|||||||||+|||
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~~gl~~~~~r~------~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGV-PKEERKQRVKEALELVDLAGFEDRY------VDQISGGQQQRVALAR 149 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCC-CHHHHHHHHHHHHHHcCCchhhcCC------hhhCCHHHHHHHHHHH
Confidence 36799999999999999999999998654321 1234567899999999999888774 4599999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||+.+|+||||||||++||+..+..+.+.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++++..
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999765 89999988887 58999999999999999999999988753
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=350.04 Aligned_cols=211 Identities=24% Similarity=0.315 Sum_probs=188.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++|+|+++.|.+ ++.+|+||||.+++||++-|+||||||||||||+|.+..+|+. |+|+++|.++..
T Consensus 2 I~f~~V~k~Y~~----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSKAYPG----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhhhcCC----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeeccccccccc
Confidence 689999999964 4569999999999999999999999999999999999999985 999999987421
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+++||+||||..|.+..||+||+.|+...... ...+.+++|.++|+.+||.+.++.+ |.+|||||+|||+
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~-~~~~i~~rV~~~L~~VgL~~k~~~l------P~~LSGGEQQRva 147 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK-PPREIRRRVSEVLDLVGLKHKARAL------PSQLSGGEQQRVA 147 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCC-CHHHHHHHHHHHHHHhccchhhhcC------ccccCchHHHHHH
Confidence 246899999999999999999999998765422 2256778899999999999888775 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||++.+|+|||.||||.+|||..+.+|++++.++...|+||++.||+. ..+..+-.|++.|++|+++.+..
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999999999999988875 57888889999999999987643
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=386.77 Aligned_cols=219 Identities=24% Similarity=0.326 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|. .+.+|+|+|+++.+||+++|+|||||||||||++|+|+.+|++ .+|+|.++|++... ..
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~-~~G~i~~~g~~~~~~~~~~ 78 (362)
T TIGR03258 5 GIRIDHLRVAYG-----ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHAPPHK 78 (362)
T ss_pred EEEEEEEEEEEC-----CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCEEEEECCEECCCCCHHH
Confidence 589999999994 3469999999999999999999999999999999999999862 13999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++||+|+..+||++||+||+.|+...+.. ...+.+++++++++.++|.++.++.+ ++|||||||||+||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~~~~------~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKM-PKADIAERVADALKLVGLGDAAAHLP------AQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCchhhCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999988654321 12344567899999999999888754 5999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+..+.++.+.|+++.++ |.|+|++||+. .++..+||+|++|++|+++..|+++++..
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999875 78999988886 58899999999999999999999998754
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-46 Score=385.41 Aligned_cols=219 Identities=24% Similarity=0.354 Sum_probs=191.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (513)
|.|+++||++.|. .+.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|+++|++... .
T Consensus 1 ~~L~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 1 MSIEIANIKKSFG-----RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHGTDVSRLHAR 72 (353)
T ss_pred CEEEEEEEEEEeC-----CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHH
Confidence 3589999999984 3469999999999999999999999999999999999999875 999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcC---CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+.++|++|++.+||.+||+||+.|+..... .....+..+++.++++.++|.++.++. +.+|||||||||+
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~------~~~LSgGq~QRva 146 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY------PAQLSGGQKQRVA 146 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC------hhhCCHHHHHHHH
Confidence 3579999999999999999999998754311 111134456789999999999888775 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+.+.|+++.++ |.|+|+++|+. .++..+||+|++|++|++++.|+++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 89999988886 5899999999999999999999998875
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 226 ~ 226 (353)
T PRK10851 226 R 226 (353)
T ss_pred h
Confidence 4
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-46 Score=382.57 Aligned_cols=219 Identities=26% Similarity=0.332 Sum_probs=192.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++||++.|. .+.+|+||||+|++|+++||+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 40 ~~i~i~nl~k~y~-----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~---G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 40 VAIDLAGVSKSYG-----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITVLGVPVPARARL 111 (340)
T ss_pred eeEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCc---eEEEECCEECCcchHH
Confidence 4699999999994 3469999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
..+.+||++|++.+++.+||.||+.+...+.. ....+..++++++++.++|.+..++.++ +|||||||||+||
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~L~~~~~~~~~------~LS~G~kqrv~lA 184 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFG-MSTREIEAVIPSLLEFARLESKADARVS------DLSGGMKRRLTLA 184 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhCCChh------hCCHHHHHHHHHH
Confidence 13569999999999999999999987554331 1112334567889999999988888665 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (513)
+||+.+|++|||||||+|||+.++..++++|++++++|+|||+++|+. +++.++||+|++|++|++++.|+++++...
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999999987899999988876 589999999999999999999999987653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=385.52 Aligned_cols=218 Identities=25% Similarity=0.357 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (513)
..|+++||++.|. .+.+|+++||.+++||+++|+|||||||||||++|+|+++|+. |+|.++|++... .
T Consensus 13 ~~L~l~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSFD-----GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS---GRIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHH
Confidence 4689999999984 3469999999999999999999999999999999999999975 999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+||++||.||+.|+...+.. ...+..++++++++.++|.++.++.+ .+|||||||||+|||
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~p------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKT-PAAEITPRVMEALRMVQLEEFAQRKP------HQLSGGQQQRVAIAR 157 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHHHHH
Confidence 36799999999999999999999987643311 11234567899999999999888754 599999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||+.+|+||||||||++||+..+..+.+.|+++.++ |.|+|++||+. .++..+||+|++|++|+++..|++.++..
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999865 89999988886 58999999999999999999999988754
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=343.88 Aligned_cols=213 Identities=27% Similarity=0.394 Sum_probs=185.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
+.++++.++|.. .=-.+++.|.+||++||+|||||||||||++|+|+..|.+ |+|++||.+... ..+
T Consensus 2 l~L~~V~~~y~~-------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~---G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGH-------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS---GEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCc-------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCC---ceEEEcCeecCcCCcccC
Confidence 456777777742 2345788899999999999999999999999999999975 999999987432 236
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++.+||+..||.++||.+|+-++..-.+.-. ++.+++++.++..+||.++.+++++ +|||||||||++||+|
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~------~LSGGqRQRvALARcl 144 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPG------ELSGGQRQRVALARCL 144 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccC-HHHHHHHHHHHHHhChhhHhhhCcc------ccCchHHHHHHHHHHH
Confidence 79999999999999999999977543211111 4567789999999999999999766 9999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+-+||+||||+|+|||.-+.+++.++.++++ ++.|++++|||+. ++.+++|+++++++|+|.+.|+.++.+
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999999999999999999999999985 5899999999984 799999999999999999999988765
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=369.07 Aligned_cols=227 Identities=24% Similarity=0.302 Sum_probs=193.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEeCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-H-SARMYGEVFVNGAKSE----- 178 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~-~-~~~~~G~I~i~G~~~~----- 178 (513)
|+++||++.|.... +..++++||||++++||++||+|+||||||||.++|+|+++ + ....+|+|.++|+++-
T Consensus 2 L~v~nL~v~f~~~~-g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDA-GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCC-ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 68999999996532 24579999999999999999999999999999999999998 4 3345799999998531
Q ss_pred ----CCCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCC-chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 179 ----MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 179 ----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
.+.+.++|+||++ .|.|.+||.+.+......+... ..++..+++.++|+.+||.+-.... +.||++||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~---~~YPhelSGG 157 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRL---KSYPHELSGG 157 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHH---hhCCcccCCc
Confidence 1235799999995 7899999999998776654322 2245567899999999998654332 3489999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||||.||.||+.+|+|||+||||++||...+.+|+++|++|++ .|.++|++||+. ..+.++||||+||+.|++|+.|
T Consensus 158 MrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 158 MRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeC
Confidence 99999999999999999999999999999999999999999986 599999988876 6899999999999999999999
Q ss_pred ChHHHHH
Q 010314 331 ETLACLQ 337 (513)
Q Consensus 331 ~~~~~~~ 337 (513)
++++++.
T Consensus 237 ~~~~i~~ 243 (316)
T COG0444 237 PVEEIFK 243 (316)
T ss_pred CHHHHhc
Confidence 9998764
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=374.47 Aligned_cols=218 Identities=25% Similarity=0.318 Sum_probs=189.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
+.++++||++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 3 ~~i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSYG-----DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEeC-----CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECcccHHH
Confidence 4689999999984 3469999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.++.++|++|++.+++.+||.||+.+...... ....+..++++++++.++|.+..++.++ +|||||||||+||
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~~~~~~~~------~LSgG~~qrv~la 147 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG-MSTREIEAVIPSLLEFARLESKADVRVA------LLSGGMKRRLTLA 147 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhHhcCchh------hCCHHHHHHHHHH
Confidence 13569999999999999999999986543321 1112334567889999999988877654 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++..
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999987899999988886 58889999999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=361.15 Aligned_cols=218 Identities=23% Similarity=0.340 Sum_probs=187.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (513)
|.++++||++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 1 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 1 MSIEVRNVSKRFG-----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS---GTILFGGEDATDVPVQ 72 (239)
T ss_pred CEEEEEeEEEEEC-----CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCcc
Confidence 3589999999994 2469999999999999999999999999999999999998874 999999987432 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+.++|++|++.+++.+||.||+.+....... ....+..+.++++++.++|.+..++.+ .+|||||||||+
T Consensus 73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 146 (239)
T cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP------AQLSGGQRQRVA 146 (239)
T ss_pred ccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHH
Confidence 35699999999999999999999876433211 011223456788999999988877755 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+.++|++++++ |+|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999999999865 89999988887 5788999999999999999999887653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=363.77 Aligned_cols=218 Identities=26% Similarity=0.369 Sum_probs=191.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE----- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~----- 178 (513)
+.+.++|+++.|.+. ..+|+++|+.+++|+.++|+|+||||||||+++|+|+++|.. |+|.++|.+..
T Consensus 2 ~~i~~~~l~~~y~~~----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~---G~v~~~g~~~~~~~~~ 74 (235)
T COG1122 2 RMIEAENLSFRYPGR----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS---GEVLVDGLDTSSEKSL 74 (235)
T ss_pred ceEEEEEEEEEcCCC----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC---CEEEECCeeccchhhH
Confidence 357899999999642 579999999999999999999999999999999999999975 99999998743
Q ss_pred -CCCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 179 -MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 179 -~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..++.+|||+|++ +++. -||.|.+.|+.... +...++.+++++++++.+|+.+++++ .|+.||||||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~-g~~~~e~~~rv~~~l~~vgl~~~~~r------~p~~LSGGqkqR 146 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL-GLPREEIEERVAEALELVGLEELLDR------PPFNLSGGQKQR 146 (235)
T ss_pred HHhhcceEEEEECccccccc-CcHHHHHhhchhhc-CCCHHHHHHHHHHHHHHcCchhhccC------CccccCCcceee
Confidence 2246799999986 6664 59999999986532 22224577889999999999999877 456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+||.+|+.+|++|+|||||||||+..+..+++++++|.++ |+|+|+++|+. +.+..+||++++|++|++++.|++.+
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHH
Confidence 99999999999999999999999999999999999999977 78999988886 68999999999999999999999887
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 226 i~~ 228 (235)
T COG1122 226 IFN 228 (235)
T ss_pred Hhh
Confidence 765
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=357.37 Aligned_cols=213 Identities=27% Similarity=0.366 Sum_probs=184.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKYG-----DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEEC-----CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEecCcChHHHh
Confidence 46899999984 3469999999999999999999999999999999999998875 999999976432 12
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||+||+.+....... ...+..+.++++++.++|.+..++.+ ..|||||||||+||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qr~~la~a 145 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGV-PGAERRERIDELLDFVGLLEAADRLV------KTYSGGMRRRLEIARS 145 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhCCh------hhCCHHHHHHHHHHHH
Confidence 4689999999999999999999876543211 11234456889999999988877755 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+. .++..+||++++|++|+++..|++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999999876 89999988886 57889999999999999999888764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=382.37 Aligned_cols=218 Identities=22% Similarity=0.346 Sum_probs=192.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (513)
..|+++|+++.|. ...+|+|+||++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++... .
T Consensus 18 ~~l~l~~v~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 18 PLLEIRNLTKSFD-----GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSHVPPY 89 (377)
T ss_pred ceEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHH
Confidence 4699999999984 3469999999999999999999999999999999999999975 999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.+||++|++.+||++||.||+.|+...+.. ...+..+++.++++.++|.++.++. +++|||||||||+|||
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~l~L~~~~~~~------~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKL-PKAEIASRVNEMLGLVHMQEFAKRK------PHQLSGGQRQRVALAR 162 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCC------hhhCCHHHHHHHHHHH
Confidence 35799999999999999999999987654321 1234556789999999999888774 4599999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||+.+|+||||||||++||+..+..+.+.|+++.+ .|.|+|++||+. .++..+||++++|++|+++..|+++++..
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999875 489999988886 58999999999999999999999988754
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=355.82 Aligned_cols=209 Identities=28% Similarity=0.416 Sum_probs=179.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTYG-----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEeC-----CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcCcCchhhc
Confidence 46899999984 2469999999999999999999999999999999999999875 999999987532 234
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||+||+.+....... ......+.+.++++.++|.+..++.+ ..|||||||||+|||||
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~la~al 145 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGV-PKAEIRARVRELLELVGLEGLLNRYP------HELSGGQQQRVALARAL 145 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHHHHHHH
Confidence 699999999999999999999876432211 11233456889999999988877755 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+.+|+||||||||+|||+.++..+++.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999986 489999988886 5788999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=356.20 Aligned_cols=215 Identities=29% Similarity=0.374 Sum_probs=183.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
++++|+++.|.+.. ..+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+.....+.++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGG-GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCC-cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccccCcEE
Confidence 46899999985311 11469999999999999999999999999999999999998874 999999987644446799
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
|++|++.+++.+||+||+.+....... ......+.+.++++.++|.+..++.+ ..|||||||||+|||||+.+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGV-PKAEARERAEELLELVGLSGFENAYP------HQLSGGMRQRVALARALAVD 149 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCCc------ccCCHHHHHHHHHHHHHHcC
Confidence 999999999989999999876543211 11233456889999999988877755 49999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeCh
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGET 332 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~ 332 (513)
|++|||||||+|||+.++..+++.|+++.+ .|+|||+++|++ .++..+||++++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999965 489999988887 47889999999999 7999988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=361.34 Aligned_cols=216 Identities=24% Similarity=0.328 Sum_probs=185.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|. .+.+|+++||++++|++++|+||||||||||+++|+|+++|.+ |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRFG-----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEEC-----CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEECCCCCHHHH
Confidence 46899999984 2469999999999999999999999999999999999998874 9999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCC---------chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPG---------FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~---------~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG 250 (513)
...++|++|++.+++.+||+||+.+........ ...+..+.+.++++.++|.+..++.+ ++|||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSg 146 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA------GELSY 146 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh------hhCCH
Confidence 235899999999999999999998765432111 11233456889999999988777654 49999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++.|+|||+++|+. +++..+||++++|++|++++.|
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeec
Confidence 999999999999999999999999999999999999999999987789999988887 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
+++++.
T Consensus 226 ~~~~~~ 231 (236)
T cd03219 226 TPDEVR 231 (236)
T ss_pred CHHHhc
Confidence 887653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=357.26 Aligned_cols=207 Identities=24% Similarity=0.301 Sum_probs=178.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|.+. .+.+|+++||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPGG---HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTR---GKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecCC---CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEehhhcChhHH
Confidence 6899999998421 2369999999999999999999999999999999999999875 999999986531
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+||.||+.+....... ...+..+++.++++.++|.+..++.+ .+|||||||||+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~ 148 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGV-PPRDANERVSAALEKVGLEGKAHALP------MQLSGGEQQRVA 148 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHH
Confidence 124689999999999999999999886543211 11234567889999999988877754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|++ +.+..+||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987789999988886 578889999999999974
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=382.62 Aligned_cols=217 Identities=28% Similarity=0.412 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|. .+.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAYG-----DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHhH
Confidence 489999999984 3469999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|+..+++.+||+||+.|....+.. ...+..++++++++.++|.+..++.+ .+|||||||||+||||
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~lgL~~~~~~~~------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEEINQRVNQVAEVLQLAHLLDRKP------KALSGGQRQRVAIGRT 147 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCC-CHHHHHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHH
Confidence 5699999999999999999999887643311 11234567899999999998887755 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+.++..+++.|+++.++ |.|+|+++|+. .++..+||++++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999765 89999988886 57899999999999999999999988753
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-46 Score=355.78 Aligned_cols=219 Identities=25% Similarity=0.331 Sum_probs=193.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..+++++|+++| ++-.+++||||++++||+++||||||||||||+|+|+|+++|++ |+|.++|+++...
T Consensus 3 ~lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~---G~v~~~G~~it~l~p~ 74 (250)
T COG0411 3 PLLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLPPH 74 (250)
T ss_pred ceeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC---ceEEECCcccCCCCHH
Confidence 357899999999 46789999999999999999999999999999999999999986 9999999976431
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhc--------CCCc---hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCC
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQ--------LPGF---FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~--------~~~~---~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~ 246 (513)
+..++.-||...+|+.|||.||+..++..+ .+.. ..+..++..++|+.+||.+.+++..+
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~------ 148 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG------ 148 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh------
Confidence 245788899999999999999998875422 2221 23456778899999999999999876
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+||+||||||.|||||+.+|++|+||||.+||.+....++.++|++++++ |.||+++-|+. ..++.+||||+||+.|+
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~ 227 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGE 227 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCc
Confidence 99999999999999999999999999999999999999999999999974 68999976665 68999999999999999
Q ss_pred EEEEeChHHHHH
Q 010314 326 TLFFGETLACLQ 337 (513)
Q Consensus 326 iv~~G~~~~~~~ 337 (513)
+++.|+|+++..
T Consensus 228 ~IAeG~P~eV~~ 239 (250)
T COG0411 228 VIAEGTPEEVRN 239 (250)
T ss_pred CcccCCHHHHhc
Confidence 999999999764
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=357.46 Aligned_cols=215 Identities=23% Similarity=0.361 Sum_probs=185.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|. .+.+|+|+||.+++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRYG-----KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS---GKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEeC-----CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccCCHhHH
Confidence 46899999984 3469999999999999999999999999999999999999875 999999986421
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
..+.++|++|++.+++.+||+||+.+....... ........++++++.+++.+..++.+ +.|||||||||+||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la 145 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIRGL-SKKEREEKLEELLEEFHITHLRKSKA------SSLSGGERRRVEIA 145 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHHHH
Confidence 123589999999999999999999876433211 11233456789999999988777754 49999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|+++..|+.+++.
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999999999999999999999999987789999988887 4789999999999999999999887653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=369.38 Aligned_cols=232 Identities=22% Similarity=0.292 Sum_probs=192.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|..+....+.+|+||||++.+||+++|+||||||||||+++|+|+++|++ |+|+++|.+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE---GKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECCEECcccccccc
Confidence 78999999995322122369999999999999999999999999999999999999975 999999987531
Q ss_pred ---CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHH
Q 010314 180 ---PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 ---~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqr 253 (513)
..+.++|++|++ .+++ .||.||+.|...... ....+.++++.++++.++|. ++.++. ++.||||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~~LSgGqk 150 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFG-IPKEKAEKIAAEKLEMVGLADEFWEKS------PFELSGGQM 150 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCChhhccCC------cccCCHHHH
Confidence 124689999986 5665 599999988754321 11134456789999999996 466654 459999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|+. .++..+||+|++|++|++++.|+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999987799999988886 5788999999999999999999998
Q ss_pred HHHH---HhHhcCCCCCCC
Q 010314 334 ACLQ---HFSNAGFPCPIM 349 (513)
Q Consensus 334 ~~~~---~f~~~g~~~~~~ 349 (513)
+++. .+...|+.+|..
T Consensus 230 ~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 230 DVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred HHHcCHHHHHHcCCCCChH
Confidence 8753 244556666543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=377.05 Aligned_cols=219 Identities=23% Similarity=0.299 Sum_probs=188.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++||++.|..+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 2 i~i~~l~~~y~~~~-~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~---G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQGG-RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS---GRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCCC-CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHH
Confidence 68999999995211 13569999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
++.++|++|++.+++.+||.||+.+....... ...+..+++.++++.+||.+..++.+ .+|||||||||+
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~qRv~ 150 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT-PKAEIKARVTELLELVGLSDKADRYP------AQLSGGQKQRVA 150 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHH
Confidence 24699999999999999999999887543311 11234467889999999998877754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999765 89999988886 5788999999999999999999988764
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=349.67 Aligned_cols=219 Identities=23% Similarity=0.407 Sum_probs=194.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P-- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~-- 180 (513)
..|..+||.++|. +++++++||+.+++||+++|+|||||||||.+.++.|+.+|++ |+|.++|.++.. +
T Consensus 3 ~~L~a~~l~K~y~-----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~---G~i~ld~~diT~lPm~ 74 (243)
T COG1137 3 STLVAENLAKSYK-----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDEDITKLPMH 74 (243)
T ss_pred cEEEehhhhHhhC-----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCC---ceEEECCcccccCChH
Confidence 3688999999984 5679999999999999999999999999999999999999986 999999987542 1
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc-hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~-~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
+..+||++|++.+|..+||+||+......+.... ..+.+.+++++|+.|++.++++.... .||||||+|+
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~------sLSGGERRR~ 148 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY------SLSGGERRRV 148 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc------ccccchHHHH
Confidence 2468999999999999999999987766554222 23455678899999999999988643 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
.|||||+.+|+.|+||||++|+||.+..+|-++++.|++.|..|++|-|.. .+...+|||.+++++|++++.|+++++.
T Consensus 149 EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 149 EIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHh
Confidence 999999999999999999999999999999999999999999999977765 5889999999999999999999999986
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 228 ~ 228 (243)
T COG1137 228 N 228 (243)
T ss_pred c
Confidence 4
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=368.37 Aligned_cols=264 Identities=24% Similarity=0.301 Sum_probs=222.5
Q ss_pred eeEEecccccccccCCCCcchhhccCCCCCCCCCCcchhhhhccCCceEEEEeEEEEEecccc------ccceeeeeeee
Q 010314 58 VRVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR------YSDKVVKSSNG 131 (513)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~------~~~~iL~~vs~ 131 (513)
-.++|.|.+...++.|.|||++.|..+.+...+.+... .....++.+|+.+.|+-++. ....++++||+
T Consensus 234 G~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~-----~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl 308 (534)
T COG4172 234 GEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPE-----DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISL 308 (534)
T ss_pred cEEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCC-----CCCceEEecceEEEEecCCccccccchheEEecccee
Confidence 34688999999999999999999987654332222111 13467999999999976532 12469999999
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--------CCceEEEEcCCc--ccCCCCCHHH
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--------PYGSYGFVERET--TLIGSLTVRE 201 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E 201 (513)
++++||.++|+|+||||||||-.+|.+++++. |+|.|+|+++.. .++.+-.||||+ .|.|.+||.+
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~----G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~q 384 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ 384 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCcC----ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHH
Confidence 99999999999999999999999999999875 999999987532 134677888886 7899999999
Q ss_pred HHHHHHHhcCCC-chhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010314 202 YLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (513)
Q Consensus 202 ~l~~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD 279 (513)
.+..+....-+. ...++++++.++|+.+||+. .+++ ||+++|||||||++|||||+.+|++++||||||+||
T Consensus 385 II~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~R------YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 385 IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNR------YPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred HhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhc------CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 999887765433 33678889999999999985 4444 888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 280 SVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 280 ~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
...+.+|+++|++|.+ .|.+-++++|+. ..+..+||+|+||++|+||+.|++++++.
T Consensus 459 ~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 459 RSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 9999999999999985 499999977775 68999999999999999999999998864
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=370.43 Aligned_cols=217 Identities=26% Similarity=0.336 Sum_probs=190.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
|.++++|++++|. .+.+|+|+||.+++||++||+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 1 ~~l~~~~l~~~~~-----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~---G~i~i~g~~~~~~~~~ 72 (301)
T TIGR03522 1 MSIRVSSLTKLYG-----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS---GSVQVCGEDVLQNPKE 72 (301)
T ss_pred CEEEEEEEEEEEC-----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccChHH
Confidence 3589999999994 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
++.+||++|++.+++.+||.||+.+.+.+.... ..+..++++++++.+||.+..++.++ .|||||||||+||
T Consensus 73 ~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~------~LS~G~~qrv~la 145 (301)
T TIGR03522 73 VQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK-GQLLKQRVEEMIELVGLRPEQHKKIG------QLSKGYRQRVGLA 145 (301)
T ss_pred HHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHCCCchHhcCchh------hCCHHHHHHHHHH
Confidence 246999999999999999999998766543211 12344568899999999988887654 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+||+.+|++|||||||+|||+.++..+++.|+++++ ++|||+++|+. +++.++||++++|++|++++.|+++++..
T Consensus 146 ~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 146 QALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999965 78999988886 58999999999999999999999988754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=351.69 Aligned_cols=209 Identities=24% Similarity=0.388 Sum_probs=180.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRFG-----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS---GRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEEC-----CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCcccc
Confidence 46899999984 3469999999999999999999999999999999999998875 999999987532 124
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||+||+.+...... ....+..+++.++++.++|.+..++.+ ..||||||||++|||||
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qr~~laral 145 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRK-VPKDEIDERVREVAELLQIEHLLDRKP------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHHHHhCCh------hhCCHHHHHHHHHHHHH
Confidence 69999999999999999999987643321 111234456889999999998877755 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++ .++..+||++++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999864 89999998886 5788999999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=356.79 Aligned_cols=218 Identities=23% Similarity=0.302 Sum_probs=186.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|.++. ..+.+|+++||++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS---GSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 68999999985310 01269999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+.++|++|++.+++.+|+.||+.+....... ......+.+.++++.++|.+..++.+ ..|||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 150 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGV-PKAEIEERVLELLELVGLEDKADAYP------AQLSGGQKQRVG 150 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCChhhhhcCh------hhCCHHHHHHHH
Confidence 24699999999999999999999876543211 11233456889999999988877754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++..+||++++|++|++++.|+++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999865 89999988886 578899999999999999999987765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=366.14 Aligned_cols=222 Identities=23% Similarity=0.324 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|.......+.+|+||||++.+||++||+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS---GKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEECCEECCCcCccH
Confidence 478999999995322122469999999999999999999999999999999999999975 999999987532
Q ss_pred --CCceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh--hHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 --PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.+||++|++. .+...||+||+.+..... .....+..+++.++++.+||. +..++ .++.|||||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~~LSgGq~q 151 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYEDYKDK------SPFELSGGQKR 151 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchhhccC------CcccCCHHHHH
Confidence 1246999999863 223579999998765432 112233456789999999996 55665 44599999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||+|||||+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|+. .++..+||+|++|++|++++.|+++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999865 89999988886 5788899999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=357.04 Aligned_cols=216 Identities=23% Similarity=0.335 Sum_probs=185.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS---GDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEEC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCChhHH
Confidence 68999999984 3469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+||.||+.+...........+..+.+.++++.+||.+..++.+ ..|||||||||+|
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrv~l 147 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP------SELSGGQQQRVAI 147 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh------hhcCHHHHHHHHH
Confidence 124689999999999999999999875421111111234456889999999988777754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
||||+.+|+||||||||+|||+.++..+.++|++++++|+|||+++|+. .++..+||++++|++|++++.|++.++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999999999999999999987799999999987 5788899999999999999999887654
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=356.07 Aligned_cols=214 Identities=25% Similarity=0.337 Sum_probs=180.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCC-
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~-----~~~~~~~G~I~i~G~~~~~- 179 (513)
++++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|++ +|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYYG-----DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEcC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhc
Confidence 46899999884 346999999999999999999999999999999999998 776 4999999987421
Q ss_pred ------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHH
Q 010314 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqr 253 (513)
..+.++|++|++.++ .+||+||+.+...........+..+++.++++.+||.+..++.+ .+.+||||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~~LSgG~~ 147 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRL----HALGLSGGQQ 147 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccC----CcccCCHHHH
Confidence 124699999999888 78999999876543211111123466889999999987766542 0459999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++ .|||+++|+. .++..+||++++|++|++++.|+++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCcc
Confidence 9999999999999999999999999999999999999999877 8999988886 5788999999999999999998875
Q ss_pred H
Q 010314 334 A 334 (513)
Q Consensus 334 ~ 334 (513)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 4
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=372.43 Aligned_cols=224 Identities=23% Similarity=0.272 Sum_probs=189.8
Q ss_pred ceEEEEeEEEEEecccc--------ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 104 ASVVWKDLTVTIKGKRR--------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
..|+++||++.|..+.. ....+|+||||+|++||+++|+|+||||||||+++|+|+++|++ |+|.++|.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~---G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD---GEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---cEEEECCE
Confidence 57999999999963211 12569999999999999999999999999999999999999874 99999998
Q ss_pred eCCC--------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHcCCh-hHHhhhhcCCC
Q 010314 176 KSEM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHC 243 (513)
Q Consensus 176 ~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~ 243 (513)
+... .++.++||+|++ .++|.+||.||+.+......+ ....+..+++.++++.++|. +..++
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~------ 157 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR------ 157 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC------
Confidence 7532 124699999997 689999999999886543211 12234456788999999994 45555
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
+|++|||||||||+|||||+.+|+|||+||||+|||+.++.+++++|+++.++ |.|+|+++|+. ..+.++||+|++|+
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMY 236 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 56799999999999999999999999999999999999999999999999865 89999988886 57889999999999
Q ss_pred CCeEEEEeChHHHHH
Q 010314 323 NGNTLFFGETLACLQ 337 (513)
Q Consensus 323 ~G~iv~~G~~~~~~~ 337 (513)
+|++++.|++++++.
T Consensus 237 ~G~ive~g~~~~i~~ 251 (331)
T PRK15079 237 LGHAVELGTYDEVYH 251 (331)
T ss_pred CCEEEEEcCHHHHHc
Confidence 999999999887753
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-45 Score=371.26 Aligned_cols=206 Identities=27% Similarity=0.327 Sum_probs=180.8
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CceEEEEcCCcccCCCC
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSL 197 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~~~~~yv~Q~~~l~~~l 197 (513)
.+.+|+|+||.+++||++||+||||||||||+++|+|+++|++ |+|.++|.+.... ++.+||++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 3569999999999999999999999999999999999999975 9999999875321 24699999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010314 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (513)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsg 277 (513)
||+||+.+.+.+... ...+..++++++++.++|.+..++.++ .|||||||||+||+||+.+|++|||||||+|
T Consensus 82 tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 82 TGRENLEMMGRLYGL-PKDEAEERAEELLELFELGEAADRPVG------TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred cHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhCCchh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999886554321 112344578899999999988877654 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHH
Q 010314 278 LDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (513)
Q Consensus 278 LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (513)
||+.++..++++|++++++|+|||+++|+. .++..+||+|++|++|++++.|+++++...
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999987799999988886 588999999999999999999999887553
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=371.26 Aligned_cols=229 Identities=23% Similarity=0.272 Sum_probs=191.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..|+++||++.|.... +...+|+||||+|++||+++|+|+||||||||+++|+|+++|....+|+|.++|.++...
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 4789999999996321 234699999999999999999999999999999999999988522359999999875321
Q ss_pred ------CceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH
Q 010314 181 ------YGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 181 ------~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq 252 (513)
.+.++|++|++ .++|.+|+.+++.+...........+..+++.++++.++|.+..+.. +.+|++|||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~---~~~p~~LSgG~ 166 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRM---KMYPHEFSGGM 166 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHh---cCCcccCCHHH
Confidence 13699999997 78899999999977654332222234456788999999997543321 34788999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||+|||||+.+|+|||+||||+|||+.++..|+++|++++++ |.|+|+++|+. ..+.++||+|++|++|++++.|+
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 89999988886 57888999999999999999999
Q ss_pred hHHHHH
Q 010314 332 TLACLQ 337 (513)
Q Consensus 332 ~~~~~~ 337 (513)
+++++.
T Consensus 246 ~~~i~~ 251 (330)
T PRK09473 246 ARDVFY 251 (330)
T ss_pred HHHHHh
Confidence 988753
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=358.86 Aligned_cols=217 Identities=24% Similarity=0.313 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKFH-----GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA---GTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcccccccc
Confidence 489999999984 2469999999999999999999999999999999999998875 999999976421
Q ss_pred --------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 180 --------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 --------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
..+.++|++|++.+++.+||.||+.+..............+.+.++++.+||.+..++.+ ..||||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G 148 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP------RRLSGG 148 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh------hhCChH
Confidence 124689999999999999999999875322111111233456888999999987776644 599999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|+. .++.++||++++|++|++++.|+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987789999988886 57889999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 228 ~~~~~ 232 (250)
T PRK11264 228 AKALF 232 (250)
T ss_pred HHHHh
Confidence 87653
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-45 Score=357.23 Aligned_cols=216 Identities=28% Similarity=0.405 Sum_probs=183.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++||++.|.+ .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 1 l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPN----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---GSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCC----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEeccccCHhHH
Confidence 468999998842 1469999999999999999999999999999999999998874 9999999875321
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhc-------CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQ-------LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~-------~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG 250 (513)
.+.++|++|++.+++.+||+||+.+..... .........+++.++++.++|.+..++.+ .+|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~ 147 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA------DQLSG 147 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc------ccCCH
Confidence 246899999999999999999997653210 00011223456788999999987776644 59999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|++ +++..+||++++|++|++++.
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999999999764 89999988887 578889999999999999999
Q ss_pred eChHHH
Q 010314 330 GETLAC 335 (513)
Q Consensus 330 G~~~~~ 335 (513)
|+++++
T Consensus 227 ~~~~~~ 232 (241)
T cd03256 227 GPPAEL 232 (241)
T ss_pred cCHHHh
Confidence 988765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=351.71 Aligned_cols=213 Identities=30% Similarity=0.416 Sum_probs=182.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|+++.|.++. ....+|+++||++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 2 l~~~~v~~~~~~~~-~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDVK-KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCCC-ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEEcccCHHHHH
Confidence 68899999985321 11269999999999999999999999999999999999999875 999999987532 13
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||+||+.+....... ...+..+++.++++.+||.+..++.++ .|||||||||+||||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~lara 150 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGL-KGDELTARLEELADRLGMEELLDRRVG------GFSTGMRQKVAIARA 150 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHhhhhh------hcCHHHHHHHHHHHH
Confidence 5699999999999999999999875443211 112345678899999999988887654 999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++..+||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999987799999988887 5788999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=377.28 Aligned_cols=206 Identities=26% Similarity=0.344 Sum_probs=181.7
Q ss_pred ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEEcCCc
Q 010314 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVERET 191 (513)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~Q~~ 191 (513)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++... ++.++||+|++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~---G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA---GQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 34569999999999999999999999999999999999999975 9999999875421 35799999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 010314 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (513)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLll 271 (513)
.+||.+||+||+.+...+... ...+..+++.++++.+||.++.++.+ .+|||||||||+|||||+.+|+||||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~-~~~~~~~~~~~~l~~vgL~~~~~~~p------~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGW-PEQERKEKALELLKLVGLEEYEHRYP------DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCchhhhCCh------hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999987654321 12345567899999999988887754 59999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||++||+.++..+.+.|.++.++ |+|||+++|+. .++..+||+|++|++|+++..|++++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999999999764 89999988886 57899999999999999999999988754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=353.20 Aligned_cols=212 Identities=24% Similarity=0.369 Sum_probs=181.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGYG-----KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS---GSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeecC-----CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCCCCHHHH
Confidence 46899999884 3469999999999999999999999999999999999999875 9999999865321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHc-CChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~-~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++.+++.+|++||+.+...... . .+....+.++++.+ ++.+..++.+ +.|||||||||+|
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-~--~~~~~~~~~~l~~~~~l~~~~~~~~------~~LS~G~~qrv~l 143 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARR-R--AKRKARLERVYELFPRLKERRKQLA------GTLSGGEQQMLAI 143 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcC-c--hhHHHHHHHHHHHHHhhhhhhhCch------hhCCHHHHHHHHH
Confidence 2459999999999999999999987654321 1 12344567788887 5776666644 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
||||+.+|++|||||||+|||+.++..+++.|+++++.|+|||+++|++ .++..+||++++|++|+++..|+++++
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999987789999988886 578899999999999999999987764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=366.26 Aligned_cols=220 Identities=23% Similarity=0.289 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|.+.....+.+|+||||+|++||+++|+||||||||||+++|+|+++|+. |+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS---GTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 478999999995322112469999999999999999999999999999999999999875 999999987531
Q ss_pred ----CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHH
Q 010314 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGq 252 (513)
..+.++|++|++ .++ ..||.||+.|+..... ....+..++++++++.++|. +..++. +..|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~LSgGq 150 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFG-VSEEDAKQKAREMIELVGLPEELLARS------PFELSGGQ 150 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCChhhhhCC------cccCCHHH
Confidence 124699999986 455 4699999988654321 11123345789999999996 566664 45999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||+++|+. .++.++||||++|++|++++.|+
T Consensus 151 ~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~ 229 (290)
T PRK13634 151 MRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGT 229 (290)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999765 89999988886 57889999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 230 ~~~~~ 234 (290)
T PRK13634 230 PREIF 234 (290)
T ss_pred HHHHh
Confidence 88765
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=351.86 Aligned_cols=214 Identities=28% Similarity=0.384 Sum_probs=183.3
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
|+++|+++.|.+. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKKG---TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCCC---CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccchHHHh
Confidence 4689999998421 1569999999999999999999999999999999999998875 999999987532 13
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||+||+.+........ ..+..+++.++++.++|.+..++.++ +|||||||||+||||
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~la~a 147 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLKGLP-KSEIKEEVELLLRVLGLTDKANKRAR------TLSGGMKRKLSLAIA 147 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHhChhh------hCCHHHHHHHHHHHH
Confidence 46999999999999999999998765433211 12234568899999999888777554 999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+.+|++|||||||+|||+.++..+++.|+++++ +.|||+++|++ ..+..+||++++|++|++++.|++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999976 58999988887 57888999999999999999998765
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=361.69 Aligned_cols=218 Identities=21% Similarity=0.307 Sum_probs=186.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++||++.|. .+.+|+||||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 6 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 6 NLVDMRGVSFTRG-----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFDGENIPAMSRS 77 (269)
T ss_pred ceEEEeCeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccChh
Confidence 3689999999984 3469999999999999999999999999999999999999874 999999986531
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|+..+++.+||.||+.+................+.++++.++|.+..++.+ ..||||||||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qr 151 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP------SELSGGMARR 151 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHH
Confidence 124689999999999999999999875432111111223456788999999988877754 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+. .++..+||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999765 89999988886 57889999999999999999999877
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 231 ~~ 232 (269)
T PRK11831 231 LQ 232 (269)
T ss_pred Hh
Confidence 54
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=380.19 Aligned_cols=217 Identities=27% Similarity=0.383 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.|+++||++.|. ++.+|+|+||.+++||+++|+||||||||||||+|+|+++|.+ |+|.++|++...
T Consensus 3 ~L~~~nls~~y~-----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~s---G~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEFG-----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECCEEcCcCCHHH
Confidence 589999999984 3579999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhc---CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQ---LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++.+++.+||+||+.++.... .........++++++++.++|.+..++.+ ++|||||||||
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~------~~LSgGerQRv 148 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV------TSLSGGERQRV 148 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHH
Confidence 1356999999999989999999998753211 11111234567899999999998888755 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+|||||+.+|+||||||||+|||+.++.+++++|++++++|+|||+++|+. +++.++||++++|++|++++.|++++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999987789999988886 6889999999999999999999998754
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=349.91 Aligned_cols=209 Identities=25% Similarity=0.428 Sum_probs=180.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCceE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSY 184 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ 184 (513)
++++|+++.|. .+.+|+|+||++.+|++++|+||||||||||+++|+|+++|+. |+|.++|.+... ..+.+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRFG-----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS---GEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCCchhHHHHccE
Confidence 46899999884 3469999999999999999999999999999999999998874 999999976432 23569
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
+|++|++.+++.+||+||+.+....+.. ...+..+.+.++++.+++.+..++.+ ++|||||||||+||+||+.
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la~al~~ 145 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGL-KKEEARRRIDEWLERLELSEYANKRV------EELSKGNQQKVQFIAAVIH 145 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCChHHHhCcH------hhCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999876543211 11234467889999999988777754 4999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||++++|++|++++.|
T Consensus 146 ~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999987789999988886 5788899999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=368.94 Aligned_cols=221 Identities=20% Similarity=0.244 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (513)
.|+++||++.|.++......+|+||||+|.+||++||+||||||||||+++|+|+++|+. |+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT---GTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEEeceecccccccc
Confidence 489999999996432223469999999999999999999999999999999999999975 99999986431
Q ss_pred -----------------------CCCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-
Q 010314 179 -----------------------MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS- 232 (513)
Q Consensus 179 -----------------------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~- 232 (513)
...+.+||++|++ .++ ..||+||+.|+.... .....+..+++.++++.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~ 156 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELVGLDE 156 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCCh
Confidence 0124689999985 455 469999998865432 111234456789999999996
Q ss_pred hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHH
Q 010314 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (513)
Q Consensus 233 ~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (513)
+..++. +..|||||||||+||++|+.+|+||||||||+|||+.++..+++.|+++++.|.|||+++|+. +.+.
T Consensus 157 ~~~~~~------~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~ 229 (305)
T PRK13651 157 SYLQRS------PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNVL 229 (305)
T ss_pred hhhhCC------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHHH
Confidence 677764 459999999999999999999999999999999999999999999999987799999988886 5788
Q ss_pred hcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 313 GLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 313 ~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
++||+|++|++|++++.|+++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999988753
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=349.13 Aligned_cols=205 Identities=26% Similarity=0.364 Sum_probs=179.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++|+++.|. .+.+|+++||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYG-----KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---GEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEEC-----CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCCcccchHHHHh
Confidence 46899999984 3469999999999999999999999999999999999999874 999999976432 134
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||.||+.+...... ...++++++++.++|.+..++.++ .|||||||||+|||||
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~la~al 141 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLLG-----IRKKRIDEVLDVVGLKDSAKKKVK------GFSLGMKQRLGIALAL 141 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhcC-----CcHHHHHHHHHHcCCHHHHhhhHh------hCCHHHHHHHHHHHHH
Confidence 69999999999999999999987653221 123567889999999988887654 9999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+.+|++|||||||+|||+.++..+++.|++++++|+|+|+++|++ ..+..+||++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999987789999988886 5788899999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=352.16 Aligned_cols=208 Identities=29% Similarity=0.373 Sum_probs=176.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|.+.+ ..+.+|+++||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCc---eeEEECCEehhhcchhHH
Confidence 46899999985311 01469999999999999999999999999999999999999875 999999987532
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++.+++.+||+||+.+........ .....+.+.++++.+||.+..++.+ +.|||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 149 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVP-KKERRERAEELLERVGLGDRLNHYP------SELSGGQQQRV 149 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHcCCchhhhcCh------hhcCHHHHHHH
Confidence 1246999999999999999999998865433111 1233456889999999988877754 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||+++|+.. ++. +||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999987 5899999999874 565 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=344.29 Aligned_cols=216 Identities=23% Similarity=0.338 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.|+++||+..| +..++|++|||++++||+++|+|+||+|||||||+|+|+.++.+ |+|.++|+++...
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~---G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEECCeecCCCCHHH
Confidence 68999999988 34689999999999999999999999999999999999999864 9999999986432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcC-ChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
+..++||||...+||.|||+|||..++..+.... .....++++.+.|- |.+.++++.| .|||||||.++
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~--~~~~~~e~v~~lFP~Lker~~~~aG------~LSGGEQQMLA 146 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE--AQERDLEEVYELFPRLKERRNQRAG------TLSGGEQQMLA 146 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccc--cccccHHHHHHHChhHHHHhcCccc------CCChHHHHHHH
Confidence 3579999999999999999999988764432211 11222777888875 5677777665 99999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|++|+|||||.||-|.-..+|.+.|++|+++ |.||++ ++|....+.+++||.++|.+|++++.|+++++.
T Consensus 147 iaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL-VEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 147 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE-EeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999976 778888 678788999999999999999999999998875
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 226 ~ 226 (237)
T COG0410 226 A 226 (237)
T ss_pred c
Confidence 4
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=368.20 Aligned_cols=232 Identities=20% Similarity=0.244 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|.+.....+.+|+||||++++||++||+|+||||||||+++|+|+++|++ |+|+++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~---G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY---GTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCEEccccccc
Confidence 4699999999996322122469999999999999999999999999999999999999875 999999976421
Q ss_pred -----------------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhh
Q 010314 180 -----------------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLI 239 (513)
Q Consensus 180 -----------------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~v 239 (513)
..+.++||+|++ .+++ .||+||+.++.... .....+..+++.++++.++|. +..++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~- 173 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLDDSYLERS- 173 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCChhHhcCC-
Confidence 124699999986 5675 49999998865322 111123445788999999996 566653
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEE
Q 010314 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (513)
Q Consensus 240 g~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (513)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+. +.+..+||+++
T Consensus 174 -----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri~ 247 (320)
T PRK13631 174 -----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEVI 247 (320)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEE
Confidence 459999999999999999999999999999999999999999999999987799999988886 47889999999
Q ss_pred EEeCCeEEEEeChHHHHH---HhHhcCCCCC
Q 010314 320 LLSNGNTLFFGETLACLQ---HFSNAGFPCP 347 (513)
Q Consensus 320 vL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 347 (513)
+|++|++++.|+++++.. .+...+...|
T Consensus 248 vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999987653 2334455544
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=359.51 Aligned_cols=216 Identities=26% Similarity=0.321 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.|.+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 4 ~l~~~~l~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKD----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR---GRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCC----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECCEECCCCCHHH
Confidence 5899999999842 2469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++. .++..||.||+.+....... ...+..+++.++++.++|.+..++.+ ..|||||||||+|
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgG~~qrv~l 149 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGL-DKDEVERRVEEALKAVRMWDFRDKPP------YHLSYGQKKRVAI 149 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCC-CHHHHHHHHHHHHHHCCCHHHhcCCh------hhCCHHHHHHHHH
Confidence 246999999962 34467999999876432211 11233456889999999988877754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
||||+.+|++|||||||+|||+.++..++++|++++++|+|||+++|+. +.+.++||++++|++|++++.|+++++
T Consensus 150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999999999987799999988886 578899999999999999999998643
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=357.58 Aligned_cols=216 Identities=28% Similarity=0.388 Sum_probs=182.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
+.++||++.|.. .+.+|+|+||++.+|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYPN----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSS---GSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecCC----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---cEEEECCEEhhhCCHHHH
Confidence 678999998841 3469999999999999999999999999999999999999875 999999987431
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhc------C-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQ------L-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~------~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++.+||+||+.+..... . .....+..+++.++++.++|.+..++.+ ..|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSg 148 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA------DQLSG 148 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc------ccCCH
Confidence 1246999999999999999999997642110 0 0011233456888999999988777644 49999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|+. ..+.++||++++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999764 89999988887 478899999999999999999
Q ss_pred eChHHH
Q 010314 330 GETLAC 335 (513)
Q Consensus 330 G~~~~~ 335 (513)
|+++++
T Consensus 228 ~~~~~~ 233 (243)
T TIGR02315 228 GAPSEL 233 (243)
T ss_pred CCHHHh
Confidence 987764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=368.49 Aligned_cols=224 Identities=20% Similarity=0.224 Sum_probs=189.5
Q ss_pred ceEEEEeEEEEEecccc-----ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC
Q 010314 104 ASVVWKDLTVTIKGKRR-----YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~-----~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~ 178 (513)
..|+++||++.|..+.. ....+|+||||+|++||++||+|+||||||||+++|+|+++|.+ |+|.++|.++.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~---G~i~~~g~~l~ 80 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG---GELYYQGQDLL 80 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---cEEEECCEEcC
Confidence 46899999999963211 12479999999999999999999999999999999999998864 99999998753
Q ss_pred C--------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCC
Q 010314 179 M--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKG 247 (513)
Q Consensus 179 ~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~ 247 (513)
. .++.++|++|++ .++|.+||.+++.+...........+..+++.++++.+||.+ ..++ +|++
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~------~p~~ 154 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR------YPHM 154 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcC------CCcc
Confidence 2 124699999997 689999999999776543211122344567899999999963 5554 5679
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||||||+|||||+.+|+|||+||||+|||+.++..|+++|++++++ |.|+|+++|+. ..+.++||+|++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999864 99999988886 578889999999999999
Q ss_pred EEEeChHHHHH
Q 010314 327 LFFGETLACLQ 337 (513)
Q Consensus 327 v~~G~~~~~~~ 337 (513)
++.|++++++.
T Consensus 234 ve~g~~~~~~~ 244 (327)
T PRK11308 234 VEKGTKEQIFN 244 (327)
T ss_pred EEECCHHHHhc
Confidence 99999988754
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=368.62 Aligned_cols=228 Identities=21% Similarity=0.223 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-~~~G~I~i~G~~~~~~--- 180 (513)
.|+++||++.|..+. ....+|+||||+|++||++||+|+||||||||+++|+|++++.+ ..+|+|.++|+++...
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 589999999995421 12469999999999999999999999999999999999987422 2369999999875321
Q ss_pred ------CceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH
Q 010314 181 ------YGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 181 ------~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq 252 (513)
.+.++|++|++ .++|.+||.+++.............+..+++.++++.+||.+..... +.++++|||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l---~~~p~~LSgGq 158 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL---DVYPHQLSGGM 158 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH---hCCchhCCHHH
Confidence 13599999997 58899999999876544321112234456789999999997532221 23677999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||+|||||+.+|+|||+||||+|||+.++.+++++|+++++ .|.|+|+++|+. ..+.++||+|++|++|++++.|+
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999986 489999988886 47889999999999999999999
Q ss_pred hHHHHH
Q 010314 332 TLACLQ 337 (513)
Q Consensus 332 ~~~~~~ 337 (513)
+++++.
T Consensus 238 ~~~~~~ 243 (326)
T PRK11022 238 AHDIFR 243 (326)
T ss_pred HHHHhh
Confidence 988753
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=363.92 Aligned_cols=222 Identities=21% Similarity=0.270 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
|.++++||++.|..+....+.+|+||||+|++||+++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~i~~~~~~ 77 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT---GTVTVDDITITHKTKD 77 (286)
T ss_pred CEEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECcccccc
Confidence 3589999999995322123469999999999999999999999999999999999999975 999999987532
Q ss_pred -----CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHH
Q 010314 180 -----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 -----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGG 251 (513)
..+.+||++|++ .+++ .||.||+.+...... ....+..+++.++++.+||. +..++. ++.||||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~LSgG 149 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFK-MNLDEVKNYAHRLLMDLGFSRDVMSQS------PFQMSGG 149 (286)
T ss_pred chHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHcCCChhhhhCC------cccCCHH
Confidence 124699999986 5665 599999988653321 11123456788999999996 666664 4599999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||||+|||||+.+|+||||||||+|||+.++..+.++|+++++ .|+|||+++|+. +++.++||++++|++|++++.|
T Consensus 150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999985 489999988886 5788999999999999999999
Q ss_pred ChHHHHH
Q 010314 331 ETLACLQ 337 (513)
Q Consensus 331 ~~~~~~~ 337 (513)
++.+++.
T Consensus 229 ~~~~~~~ 235 (286)
T PRK13646 229 SPKELFK 235 (286)
T ss_pred CHHHHHh
Confidence 9887654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=360.14 Aligned_cols=223 Identities=25% Similarity=0.316 Sum_probs=196.3
Q ss_pred ceEEEEeEEEEEeccc-------------------cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 010314 104 ASVVWKDLTVTIKGKR-------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~-------------------~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~ 164 (513)
..++++|+.+-|.... .+-..-++|+||+++.||++.|||-||||||||+++|+++.+|+.
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 3588999998885320 112246899999999999999999999999999999999999986
Q ss_pred CceeEEEECCEeCCC---------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHH
Q 010314 165 RMYGEVFVNGAKSEM---------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA 235 (513)
Q Consensus 165 ~~~G~I~i~G~~~~~---------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~ 235 (513)
|+|+++|.++.. +++.+++|||...|+|+.||.||..|+..++.-. ..++++++.++|+.+||.++.
T Consensus 83 ---G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~-~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 83 ---GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-KAEREERALEALELVGLEGYA 158 (386)
T ss_pred ---ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCC-HHHHHHHHHHHHHHcCchhhh
Confidence 999999987421 2457999999999999999999999987765322 256788899999999999998
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhc
Q 010314 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 236 ~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~ 314 (513)
++ ||++|||||||||.|||||+.+|+|||||||+|+|||--+.++-+.|.+|.++ ++|||+++|+. ++++++
T Consensus 159 ~~------yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlri 231 (386)
T COG4175 159 DK------YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRI 231 (386)
T ss_pred hc------CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhc
Confidence 87 56699999999999999999999999999999999999999999999999865 89999988875 699999
Q ss_pred CCEEEEEeCCeEEEEeChHHHHH
Q 010314 315 FDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 315 ~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
.|||.+|++|++|..|+|+|++.
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHc
Confidence 99999999999999999999874
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=354.26 Aligned_cols=217 Identities=23% Similarity=0.408 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAYK-----GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA---GNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEeC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 488999999984 3469999999999999999999999999999999999999875 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+||.||+.+...........+....+.++++.+++.+..++.+ +.|||||||||+|
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 148 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG------QSLSGGERRRVEI 148 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch------hhCCHHHHHHHHH
Confidence 124699999999999999999999875432211111234456889999999988776654 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
||||+.+|++|||||||+|||+.++..+.+.|+++++.|.|||+++|++ .++..+||++++|++|++++.|+++++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999999999999999999999987799999998886 5788999999999999999999887653
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=354.14 Aligned_cols=217 Identities=22% Similarity=0.326 Sum_probs=182.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~---- 179 (513)
++++||++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFYG-----EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEEC-----CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 68999999984 2469999999999999999999999999999999999998750 014999999987532
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCHHH
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSGGq 252 (513)
..+.++|++|++.+++ +|+.||+.+....+......+..+.+.++++.+||. +..++ .++.|||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSgG~ 149 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHD------SALGLSGGQ 149 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC------CcccCCHHH
Confidence 1246999999999998 999999987654321111123445688999999997 55555 455999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||||+|||||+.+|++|||||||+|||+.++..++++|+++++ ++|||+++|++ .++..+||++++|++|++++.|++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 48999988886 578899999999999999999998
Q ss_pred HHHH
Q 010314 333 LACL 336 (513)
Q Consensus 333 ~~~~ 336 (513)
+++.
T Consensus 228 ~~~~ 231 (247)
T TIGR00972 228 EQIF 231 (247)
T ss_pred HHHH
Confidence 7754
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=353.84 Aligned_cols=216 Identities=26% Similarity=0.423 Sum_probs=184.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++|+++.|.+ .+.+|+++||.+++|++++|+||||||||||+++|+|+++|+. |+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGG----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS---GEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCC----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCeEcCcCChHHh
Confidence 468999999842 1469999999999999999999999999999999999999875 999999986432 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh--HHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++.+++.+||+||+.+...+... ......+.+.++++.++|.+ ..++.+ .+|||||||||+|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~LS~G~~qrv~l 146 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKW-PKEKIRERADELLALVGLDPAEFADRYP------HELSGGQQQRVGV 146 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCCcHHHHhcCh------hhCCHHHHHHHHH
Confidence 24689999999999999999999876543211 11234456889999999985 666644 5999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++..+||++++|++|++++.|+++++.
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999865 89999999987 4788999999999999999999877653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=354.10 Aligned_cols=216 Identities=24% Similarity=0.300 Sum_probs=184.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE----- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~----- 178 (513)
|.+.++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+..
T Consensus 1 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 1 MSIQLNGINCFYG-----AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTP 72 (242)
T ss_pred CEEEEEeeEEEEC-----CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEeccccccc
Confidence 3588999999984 3469999999999999999999999999999999999998875 99999998641
Q ss_pred -C-----CCceEEEEcCCcccCCCCCHHHHHHHHH-HhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 179 -M-----PYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 179 -~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
. ..+.++|++|++.+++.+||.||+.+.. ... .....+..+.+.++++.+||.+..++.+ ..||||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G 145 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL-GLSKDQALARAEKLLERLRLKPYADRFP------LHLSGG 145 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHH
Confidence 0 1246899999999999999999996532 221 1111233456889999999988777754 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|+|+++|++ .++.++||++++|++|++++.|+
T Consensus 146 ~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~ 224 (242)
T PRK11124 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987799999988887 57788999999999999999998
Q ss_pred hHHH
Q 010314 332 TLAC 335 (513)
Q Consensus 332 ~~~~ 335 (513)
+++.
T Consensus 225 ~~~~ 228 (242)
T PRK11124 225 ASCF 228 (242)
T ss_pred HHHh
Confidence 7653
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=362.44 Aligned_cols=221 Identities=21% Similarity=0.219 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.+.++||++.|.+.....+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS---GTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 578999999995221112469999999999999999999999999999999999999975 999999987521
Q ss_pred ----CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHH
Q 010314 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGq 252 (513)
..+.++|++|++ .++ .+||.||+.+....... ...+..++++++++.+||. +..++.+ +.|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~------~~LSgGq 150 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGF-SEDEAKEKALKWLKKVGLSEDLISKSP------FELSGGQ 150 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCChhHhhCCc------ccCCHHH
Confidence 124689999996 455 57999999876433211 1123445688999999997 6777754 4999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|+. ..+.++||++++|++|++++.|++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987799999988876 578899999999999999999998
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
+++..
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 87653
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=360.94 Aligned_cols=214 Identities=25% Similarity=0.330 Sum_probs=183.3
Q ss_pred EEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 010314 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (513)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------- 179 (513)
.++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 26 ~~~~~~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~---G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKTG-----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhcC-----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccChhhhh
Confidence 5567777763 4569999999999999999999999999999999999999875 999999986431
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+||.||+.+....... ......+.+.++++.++|.+..++.+ .+|||||||||+
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qrv~ 170 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV-PRAEREERAAEALELVGLEGWEHKYP------DELSGGMQQRVG 170 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhCCc------ccCCHHHHHHHH
Confidence 124699999999999999999999886543211 11233456889999999998888755 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 171 lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 171 LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999754 89999988886 5788999999999999999999987764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=356.18 Aligned_cols=218 Identities=24% Similarity=0.261 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++||++.|. .+.+|+|+||.+++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 4 ~~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 4 NKLNVIDLHKRYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GSIVVNGQTINLVRDK 75 (257)
T ss_pred ccEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEccccccc
Confidence 3589999999984 3469999999999999999999999999999999999999875 999999976421
Q ss_pred --------------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHH-hhhhcCCCC
Q 010314 180 --------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCY 244 (513)
Q Consensus 180 --------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~vg~~~~ 244 (513)
..+.++|++|++.+++.+||+||+.+..............+++.++++.+|+.+.. ++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------ 149 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY------ 149 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC------
Confidence 12469999999999999999999977532111111123456788999999998764 553
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..++++|+++++.|+|||+++|++ .++..+||++++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 228 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 459999999999999999999999999999999999999999999999987799999988886 5788899999999999
Q ss_pred eEEEEeChHHHH
Q 010314 325 NTLFFGETLACL 336 (513)
Q Consensus 325 ~iv~~G~~~~~~ 336 (513)
++++.|++++..
T Consensus 229 ~i~~~~~~~~~~ 240 (257)
T PRK10619 229 KIEEEGAPEQLF 240 (257)
T ss_pred EEEEeCCHHHhh
Confidence 999999887653
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=347.20 Aligned_cols=206 Identities=26% Similarity=0.307 Sum_probs=177.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|.+ .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 1 l~~~~l~~~~~~----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPN----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS---GTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcccCCHHHH
Confidence 468999999842 2469999999999999999999999999999999999998875 999999986532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+|+.||+.+....... ...+..+++.++++.++|.+..++.+ .+||||||||++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 146 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGV-PPREIRKRVPAALELVGLSHKHRALP------AELSGGEQQRVA 146 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhCCh------hhcCHHHHHHHH
Confidence 124699999999999999999999876543211 11234456889999999988777754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++ ..+..+||++++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987789999988887 578889999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=346.67 Aligned_cols=205 Identities=24% Similarity=0.331 Sum_probs=176.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|.+ .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYPG----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeCC----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 689999999841 2469999999999999999999999999999999999998874 999999987532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+||.||+.+...... .......+.+.++++.++|.+..++.+ ..|||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 147 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG-KKEREIQRRVGAALRQVGLEHKADAFP------EQLSGGEQQRVA 147 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHH
Confidence 12468999999999999999999988654321 111233457889999999988777654 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999987789999988887 57888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=359.19 Aligned_cols=219 Identities=23% Similarity=0.292 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|.+. ..+.+|+|+|++|++||++||+|+||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKED--QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES---GQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCCC--CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 58999999999531 12459999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 PYGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 ~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++ .+++..||+||+.+...... ....+..+++.++++.+||.+..++.+ ..|||||||||+|
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~qrv~l 151 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG-IPHEEMKERVNEALELVGMQDFKEREP------ARLSGGQKQRVAI 151 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhCC-CCHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHHHHH
Confidence 124689999997 46677899999988643321 112234567899999999998877754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+.. ++ ..||++++|++|+++..|+++++..
T Consensus 152 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999999999999865 999999999874 56 5799999999999999999987653
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-44 Score=354.02 Aligned_cols=212 Identities=26% Similarity=0.331 Sum_probs=182.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+.......++
T Consensus 2 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYG-----GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEeC-----CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCCcEE
Confidence 68999999984 2469999999999999999999999999999999999999875 999999987643334689
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
|++|++.+++.+||.||+.+...... ....+..+++.++++.++|.+..++.+ ..|||||||||+|||||+.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAG-VEKMQRLEIAHQMLKKVGLEGAEKRYI------WQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCChhHhhCCh------hhCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999987643321 111233456889999999988777654 49999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChH
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 333 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 333 (513)
|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++..+||++++|+ +|+++..++..
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999864 589999988887 57889999999998 59999887653
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-44 Score=353.35 Aligned_cols=216 Identities=25% Similarity=0.338 Sum_probs=184.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRFG-----ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEeC-----CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 46899999984 2469999999999999999999999999999999999998875 999999986521
Q ss_pred ------------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCC
Q 010314 180 ------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (513)
Q Consensus 180 ------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~ 247 (513)
..+.++|++|++.+++.+||.||+.+..............+.+.++++.+|+.+..++.+ ..
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~ 146 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP------AQ 146 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh------hh
Confidence 134699999999999999999999875321111111233456889999999988877654 49
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ |.|+|+++|++ .++..+||++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 89999988887 578889999999999999
Q ss_pred EEEeChHHHH
Q 010314 327 LFFGETLACL 336 (513)
Q Consensus 327 v~~G~~~~~~ 336 (513)
++.|+.+++.
T Consensus 226 ~~~g~~~~~~ 235 (252)
T TIGR03005 226 VEQGKPDEIF 235 (252)
T ss_pred EEeCCHHHHh
Confidence 9999887653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=345.62 Aligned_cols=206 Identities=27% Similarity=0.342 Sum_probs=176.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|. .+.+|+++||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSFG-----DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEEC-----CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccchhHH
Confidence 46899999984 2469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+|+.||+.+...........+..+.+.++++.+++.+..++.+ ++|||||||||+|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 146 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP------AQLSGGQQQRVAI 146 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc------cccCHHHHHHHHH
Confidence 124699999999999999999999875421111111234456888999999988777754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||+++|++ .++.++||++++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999987789999988886 578899999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=348.54 Aligned_cols=215 Identities=26% Similarity=0.384 Sum_probs=183.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|+++.|. .+.+|+++||.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAYG-----ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE---GQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcccCChhhh
Confidence 67899999984 3469999999999999999999999999999999999999875 999999986432 12
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+|+.||+.+....... ......+.+.++++.+||.+..++.+ ..|||||||||+||||
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrl~lara 146 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGL-SRAEARERIAALLARLGLAERADDKV------RELNGGHRRRVEIARA 146 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHH
Confidence 4699999999888899999999876543211 11223456788999999988777754 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+.++..+.+.|+++++ +|.|+|+++|+.. .+. .||++++|++|++++.|+++++..
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999999985 5899999998874 565 599999999999999998877653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=353.48 Aligned_cols=217 Identities=22% Similarity=0.289 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.|. .+.+|+++||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRFG-----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---ceEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcC-----------C---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCC
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-----------P---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----------~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~ 244 (513)
...++|++|++.+++.+||.||+.+...... + ....+....+.++++.+||.+..++.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 2358999999999999999999987542110 0 000122346788899999988777754
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|+. .++.++||++++|++
T Consensus 152 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 152 -GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999999875 89999988886 578899999999999
Q ss_pred CeEEEEeChHHHH
Q 010314 324 GNTLFFGETLACL 336 (513)
Q Consensus 324 G~iv~~G~~~~~~ 336 (513)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987653
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=350.53 Aligned_cols=214 Identities=19% Similarity=0.288 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|. .+.+|+++||.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHYG-----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS---GRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEeeC-----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEecCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHc-CChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~-~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+||.||+.+..... . .....+.++++++.+ ++.+..++. +..|||||||||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~-~~~~~~~~~~~l~~~~~l~~~~~~~------~~~LS~G~~qrl~ 147 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA--E-RDQFQERIKWVYELFPRLHERRIQR------AGTMSGGEQQMLA 147 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc--C-hhHHHHHHHHHHHHHHHHHHHHhCc------hhhCCHHHHHHHH
Confidence 1246999999999999999999998754221 1 112234567778877 476666554 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 148 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999999999999999999999999987799999988886 5789999999999999999999988764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=355.81 Aligned_cols=208 Identities=25% Similarity=0.353 Sum_probs=181.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++||++.|. .+.+|+|+||.+.+||+++|+||||||||||+++|+|+++|++ |+|.++|.+.....+.
T Consensus 11 ~~l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYG-----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA---GELLAGTAPLAEARED 82 (257)
T ss_pred CcEEEEEEEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEHHHhhCc
Confidence 4689999999984 3469999999999999999999999999999999999999875 9999999765433457
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
++|++|++.+++.+||+||+.+... . ....++.++++.++|.+..++.+ ..|||||||||+|||+|+
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~----~---~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK----G---QWRDAALQALAAVGLADRANEWP------AALSGGQKQRVALARALI 149 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc----c---hHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHHHHh
Confidence 9999999999998999999976421 1 12356788999999988777654 499999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||+++|+. ..+..+||++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999865 589999988886 4788899999999999999887653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=345.32 Aligned_cols=207 Identities=29% Similarity=0.420 Sum_probs=177.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~ 181 (513)
++++|+++.|. .+.+|+|+||++++| +++|+||||||||||+++|+|+++|+. |+|.++|.+.... .
T Consensus 1 i~~~~~~~~~~-----~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRYG-----KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS---GTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEEC-----CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCCccccchHHHH
Confidence 46899999984 246999999999999 999999999999999999999999875 9999999764321 3
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||.||+.+....... ...+..+.+.++++.++|.+..++.+ ..|||||||||+||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~a 144 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGI-PSKEVKARVDEVLELVNLGDRAKKKI------GSLSGGMRRRVGIAQA 144 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCHHHHhCch------hhCCHHHHHHHHHHHH
Confidence 5689999999999999999999876543311 11233456889999999998877754 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+. ..+.++||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999976 58999988876 5788899999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=347.27 Aligned_cols=215 Identities=24% Similarity=0.269 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|.++. ..+.+|+++||++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS---GDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCCHHH
Confidence 589999999985321 11469999999999999999999999999999999999998874 9999999875321
Q ss_pred -----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+||+||+.+....... ...+..+++.++++.+||.+..++.+ .+||||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG~~qr 153 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK-KPAEINSRALEMLAAVGLEHRANHRP------SELSGGERQR 153 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHH
Confidence 14699999999999999999999886543211 11233457889999999988777654 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||+++|+.. ++.. +|++++|++|++++.++.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999999975 5899999999874 5655 579999999999988763
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=345.63 Aligned_cols=202 Identities=21% Similarity=0.322 Sum_probs=171.9
Q ss_pred EEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceE
Q 010314 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSY 184 (513)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ 184 (513)
+++|+++.|.+ .+.+|+++||++++||+++|+|||||||||||++|+|+++|++ |+|.++|.+... ..+.+
T Consensus 1 ~~~~l~~~~~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKK----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---GSILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCC----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEhhhHHhhcce
Confidence 36789998842 1469999999999999999999999999999999999999875 999999987521 23469
Q ss_pred EEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 185 GFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 185 ~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
+|++|++. .+..+||.||+.+..... . ...+++.++++.++|.+..++.+ ..|||||||||+|||||+
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~ 142 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKEL--D---AGNEQAETVLKDLDLYALKERHP------LSLSGGQKQRLAIAAALL 142 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhc--C---ccHHHHHHHHHHcCCchhcCCCc------hhCCHHHHHHHHHHHHHH
Confidence 99999974 234679999997754321 1 12356889999999988877754 499999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++..+||++++|++|++|
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999987799999988886 5788899999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=346.40 Aligned_cols=214 Identities=27% Similarity=0.304 Sum_probs=176.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|.++. ....+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS---GSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCCC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccchhhH
Confidence 68999999985311 11269999999999999999999999999999999999998875 999999987532
Q ss_pred --CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHH-HHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHH
Q 010314 180 --PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNV-VEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqr 253 (513)
.++.++|++|++ .+++.+||+||+.+................ +.++++.+++. ...++.+ ..||||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS~G~~ 151 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP------HELSGGQR 151 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc------hhcCHHHH
Confidence 124699999998 567789999999876443221111111122 35789999995 5666644 49999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|+. ..+..+||++++|++|+++..|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999999865 89999988887 5788899999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=345.68 Aligned_cols=207 Identities=24% Similarity=0.321 Sum_probs=178.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|.+ .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYLG----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEecC----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCChhHH
Confidence 689999999842 2469999999999999999999999999999999999999875 999999986532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+|+.||+.+....... ...+..+.+.++++.+++.+..++.+ ..|||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 147 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGA-SGDDIRRRVSAALDKVGLLDKAKNFP------IQLSGGEQQRVG 147 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCc------hhCCHHHHHHHH
Confidence 124689999999988899999999876543211 11233456788999999988777654 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
|||||+.+|++|||||||+|||+.++..++++|++++++|.|+|+++|++ .++..+||++++|++|+++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999999987789999988886 5788899999999999985
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=356.18 Aligned_cols=222 Identities=22% Similarity=0.269 Sum_probs=184.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
|.++++||++.|.+.....+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~ 77 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ---GSVRVDDTLITSTSKN 77 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccc
Confidence 3588999999995321112469999999999999999999999999999999999999875 999999987532
Q ss_pred -----CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHH
Q 010314 180 -----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 -----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGG 251 (513)
..+.++|++|++ .+++ .||+||+.+....... ...+..+.++++++.++|. ...++.+ .+||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG 149 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGV-SQEEAEALAREKLALVGISESLFEKNP------FELSGG 149 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCChhhhhCCc------ccCCHH
Confidence 124689999996 4555 6999999876432211 1123345678899999997 4566644 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+||++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~ 228 (280)
T PRK13649 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGK 228 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987789999988886 57889999999999999999999
Q ss_pred hHHHHH
Q 010314 332 TLACLQ 337 (513)
Q Consensus 332 ~~~~~~ 337 (513)
++++..
T Consensus 229 ~~~~~~ 234 (280)
T PRK13649 229 PKDIFQ 234 (280)
T ss_pred HHHHhc
Confidence 887643
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=378.69 Aligned_cols=229 Identities=25% Similarity=0.326 Sum_probs=198.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSE---- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~~---- 178 (513)
..|+++||++.|... .....+++||||++.+||++||+|.|||||||++++|.|++++. ...+|+|.++|.+..
T Consensus 4 ~lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 4 PLLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred ceEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 378999999999754 22357999999999999999999999999999999999999987 345799999997531
Q ss_pred -----CCCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 179 -----MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 179 -----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
...+.++|+||++ .+.|.+||.+.+......+......+.++++.++|+.+||.+-... ..||++||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~----~~yPheLSGG 158 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR----DRYPHQLSGG 158 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh----ccCCcccCch
Confidence 1235799999995 6788899999998776666543345677889999999999865544 3489999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|++||++ ..+.++||||+||++|++|+.|
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999985 599999988876 6899999999999999999999
Q ss_pred ChHHHHHH
Q 010314 331 ETLACLQH 338 (513)
Q Consensus 331 ~~~~~~~~ 338 (513)
++++++..
T Consensus 238 ~~~~i~~~ 245 (539)
T COG1123 238 PTEEILSN 245 (539)
T ss_pred CHHHHHhc
Confidence 99998764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=349.35 Aligned_cols=215 Identities=23% Similarity=0.337 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 2 ILYLEGLSVSFD-----GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE---GSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred eEEEEeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCeecCCCCHHH
Confidence 478999999984 3469999999999999999999999999999999999999875 999999986532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC-------CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQL-------PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-------~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
..+.++|++|++.+++.+||+||+.+...... ........++++++++.+|+.+..++.+ ..||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G 147 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA------GLLSHG 147 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHH
Confidence 12359999999999999999999987543110 0011223456889999999988777654 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ ++|||+++|+. +++.++||++++|++|++++.|+
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~ 225 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGS 225 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCC
Confidence 99999999999999999999999999999999999999999976 68999988886 57889999999999999999998
Q ss_pred hHHH
Q 010314 332 TLAC 335 (513)
Q Consensus 332 ~~~~ 335 (513)
++++
T Consensus 226 ~~~~ 229 (242)
T TIGR03411 226 LDQV 229 (242)
T ss_pred HHHH
Confidence 7765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=363.33 Aligned_cols=228 Identities=20% Similarity=0.187 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-~~~G~I~i~G~~~~~~--- 180 (513)
.|+++||++.|..+. ....+|+||||+|.+||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++...
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 589999999995321 23469999999999999999999999999999999999987421 2359999999875321
Q ss_pred ------CceEEEEcCCcc--cCCCCCHHHHHHHHHHhc-C-C---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCC
Q 010314 181 ------YGSYGFVERETT--LIGSLTVREYLYYSALLQ-L-P---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (513)
Q Consensus 181 ------~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~-~-~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~ 247 (513)
.+.++||+|++. ++|.+||.+++.+..... . . ....+..+++.++|+.+||.+..+.. +.+|++
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~---~~~p~~ 158 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM---RSFPYE 158 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH---hCCchh
Confidence 236999999975 678899999997643211 1 0 01123346788999999997532211 236779
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||||||+|||||+.+|+||||||||+|||+.++.+++++|+++.++ |.|||+++|+. ..+.++||+|++|++|++
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQT 237 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 89999988886 578899999999999999
Q ss_pred EEEeChHHHHH
Q 010314 327 LFFGETLACLQ 337 (513)
Q Consensus 327 v~~G~~~~~~~ 337 (513)
++.|++++++.
T Consensus 238 ve~g~~~~i~~ 248 (330)
T PRK15093 238 VETAPSKELVT 248 (330)
T ss_pred EEECCHHHHHh
Confidence 99999887653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=346.93 Aligned_cols=207 Identities=29% Similarity=0.425 Sum_probs=172.8
Q ss_pred EEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEE
Q 010314 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFV 187 (513)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv 187 (513)
++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+.....+.++|+
T Consensus 2 ~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYG-----GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS---GSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEEC-----CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCccHHHHHhheEEe
Confidence 678998884 2469999999999999999999999999999999999999875 99999997643223569999
Q ss_pred cCCcccC--CCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 188 ERETTLI--GSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 188 ~Q~~~l~--~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
+|++.++ ..+||.||+.+....... .......++++++++.+++.+..++.+ ..|||||||||+|||||
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~la~al 147 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI------GELSGGQQQRVLLARAL 147 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 9998763 347999999875322110 011223456889999999988777754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. +++.++||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999987789999988886 5788999999999875 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=371.28 Aligned_cols=222 Identities=26% Similarity=0.331 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeccc-------------------cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 010314 105 SVVWKDLTVTIKGKR-------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~-------------------~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~ 165 (513)
.|+++||++.|.... .+...+|+|+||++++||+++|+||||||||||+++|+|+++|++
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s- 82 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR- 82 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC-
Confidence 477788887774321 112348999999999999999999999999999999999999975
Q ss_pred ceeEEEECCEeCCCC---------CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHh
Q 010314 166 MYGEVFVNGAKSEMP---------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236 (513)
Q Consensus 166 ~~G~I~i~G~~~~~~---------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~ 236 (513)
|+|.++|.++... .+.++|++|++.+++.+||+||+.+........ ..+..+++.++++.+||.+..+
T Consensus 83 --G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~-~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 83 --GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGIN-AEERREKALDALRQVGLENYAH 159 (400)
T ss_pred --CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCChhhh
Confidence 9999999875321 246999999999999999999998876443211 1234567889999999998877
Q ss_pred hhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcC
Q 010314 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLF 315 (513)
Q Consensus 237 ~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~ 315 (513)
+. +++|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||+++|+. +++..+|
T Consensus 160 ~~------~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~ 232 (400)
T PRK10070 160 SY------PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIG 232 (400)
T ss_pred cC------cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhC
Confidence 74 459999999999999999999999999999999999999999999999975 589999988886 5788999
Q ss_pred CEEEEEeCCeEEEEeChHHHHH
Q 010314 316 DRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 316 D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|++++|++|+++..|+++++..
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999999887643
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=343.47 Aligned_cols=209 Identities=24% Similarity=0.335 Sum_probs=175.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|.++. ..+.+|+++||++++|++++|+||||||||||+++|+|+++|.. |+|.++|.+....
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEGK-LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS---GEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCCC-cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcCHhHH
Confidence 67899999985321 12469999999999999999999999999999999999999875 9999999874321
Q ss_pred ----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
.+.++|++|++.+++.+||+||+.+........ ..+..+.+.++++.+||.+..++.+ ..|||||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 150 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS-VKEAKERAYEMLEKVGLEHRINHRP------SELSGGERQRV 150 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHH
Confidence 146999999999999999999998765432111 1223456789999999988777754 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
+|||+|+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|+.. .+. .||++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999864 899999888874 554 58999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=368.64 Aligned_cols=204 Identities=26% Similarity=0.352 Sum_probs=178.4
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----CCC---------CCceEEEEc
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----SEM---------PYGSYGFVE 188 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~----~~~---------~~~~~~yv~ 188 (513)
...+|+|+||++++||+++|+|+||||||||+++|+|+++|+. |+|+++|++ ... ..+.++|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~---G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSR---GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 4578999999999999999999999999999999999999975 999999962 211 114699999
Q ss_pred CCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 010314 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (513)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~i 268 (513)
|++.++|.+||.||+.++...... ...+..+++.++++.+||.+..++.+ .+|||||||||+|||||+.+|+|
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~-~~~~~~~~a~e~le~vgL~~~~~~~~------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGM-PEAERRKRVDEQLELVGLAQWADKKP------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999987543321 11344567899999999998877754 49999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 269 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 269 LllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||||+|||+.++..+.+.|.+++++ ++|||+++|+. +++.++||+|++|++|+++..|+++++.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999865 89999988886 5789999999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=350.68 Aligned_cols=216 Identities=26% Similarity=0.345 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRLG-----GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---GEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcccCCHHH
Confidence 478999999984 3469999999999999999999999999999999999998875 999999986432
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
..+.++|++|++.+++.+||+||+.+....... ......+.+.++++.++|.+..++.+ ..|||||||||+||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGe~qrv~la 146 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL-SRAEDDALVAAALAQVDLAHLAGRDY------PQLSGGEQQRVQLA 146 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCC-CcHHHHHHHHHHHHHcCCHhHhcCCc------ccCCHHHHHHHHHH
Confidence 124689999999888889999999875422111 11223456789999999988777754 49999999999999
Q ss_pred HHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 260 RELV------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 260 raL~------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+ .+|++|||||||+|||+.++..+++.|++++ +.|.|||+++|++ .++..+||++++|++|++++.|++
T Consensus 147 ~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 225 (258)
T PRK13548 147 RVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTP 225 (258)
T ss_pred HHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCH
Confidence 9999 5999999999999999999999999999998 6689999988886 578889999999999999999988
Q ss_pred HHHH
Q 010314 333 LACL 336 (513)
Q Consensus 333 ~~~~ 336 (513)
+++.
T Consensus 226 ~~~~ 229 (258)
T PRK13548 226 AEVL 229 (258)
T ss_pred HHHh
Confidence 7654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=355.51 Aligned_cols=218 Identities=23% Similarity=0.329 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|.+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~---G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYSD----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCEECCCCcchH
Confidence 6899999999942 2469999999999999999999999999999999999999875 999999987531
Q ss_pred --CCceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 --PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++. .+...||+||+.+...... ....+..++++++++.+||.+..++.+ ..||||||||+
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qrl 150 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK-LPEDEVRKRVDNALKRTGIEHLKDKPT------HCLSFGQKKRV 150 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHCCChhhhhCCc------ccCCHHHHHHH
Confidence 1246999999973 2335799999987643221 111233467899999999998877754 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+|||||+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|+. +++..+||++++|++|++++.|++++.
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999865 89999988886 578889999999999999999999886
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 230 ~~ 231 (283)
T PRK13636 230 FA 231 (283)
T ss_pred hc
Confidence 54
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=349.54 Aligned_cols=219 Identities=21% Similarity=0.270 Sum_probs=181.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 6 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 6 AIIETENLNLFYT-----DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred ceEEEeeeEEEeC-----CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence 3689999999984 2469999999999999999999999999999999999998631 125999999986421
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++ +||+||+.+..............+.+.++++.+++. +..++ .+.+|||
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~LSg 153 (254)
T PRK14273 81 FDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNT------NALSLSG 153 (254)
T ss_pred ccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhC------CcccCCH
Confidence 1346999999988885 899999987653321111122345678889999884 33444 4569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||+|+.+|+||||||||+|||+.++..++++|+++++ +.|||+++|++ .++..+||++++|++|+++..|
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 78999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
++.++.
T Consensus 232 ~~~~~~ 237 (254)
T PRK14273 232 STDELF 237 (254)
T ss_pred CHHHHH
Confidence 988764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=353.57 Aligned_cols=215 Identities=20% Similarity=0.282 Sum_probs=182.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|. ++.+|+|+||++.+|++++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRYQ-----DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK---GAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEcC-----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---cEEEECCEEcccccCCHH
Confidence 68999999984 3469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCceEEEEcCCccc-CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 -PYGSYGFVERETTL-IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l-~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.++.++|++|++.+ +...|+.+|+.+...... ....+..+.+.++++.++|.+..++.+ ..|||||||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~ 146 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG-VPEAEITRRVDEALTLVDAQHFRHQPI------QCLSHGQKKRVA 146 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHhHhcCCc------hhCCHHHHHHHH
Confidence 12469999999753 345689999987543221 111233456788999999988877654 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999987789999988886 5788999999999999999999988764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=342.94 Aligned_cols=208 Identities=24% Similarity=0.341 Sum_probs=182.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSY 184 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~ 184 (513)
++++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|+++|+. |+|.++|.+.... .+.+
T Consensus 1 l~l~~v~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFG-----KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS---GEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEeccccccccE
Confidence 46899999884 3469999999999999999999999999999999999999875 9999999864322 2469
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
+|++|++.+++.+|++||+.+...... .....+.++++.++|.+..++.+. .||||||||++|||||+.
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~~rv~laral~~ 141 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLG-----LPDSRIDEVLNIVDLTNTGKKKAK------QFSLGMKQRLGIAIALLN 141 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcC-----CCHHHHHHHHHHcCCcHHHhhhHh------hCCHHHHHHHHHHHHHhc
Confidence 999999999999999999987653321 113457889999999988877554 999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
+|++|||||||+|||+.++..+++.|++++++|.|||+++|++ .++.++||++++|++|+++..|++.
T Consensus 142 ~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 142 HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999999999999999999999987789999999987 4788999999999999999998864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=351.68 Aligned_cols=219 Identities=25% Similarity=0.396 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|. ++.+|+++||++.+||+++|+||||||||||+++|+|+++|+...+|+|+++|.+....
T Consensus 4 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTFN-----QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEeC-----CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 689999999984 35699999999999999999999999999999999999987532359999999864210
Q ss_pred ------CceEEEEcCCcccCCCCCHHHHHHHHHHhcC-------CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCC
Q 010314 181 ------YGSYGFVERETTLIGSLTVREYLYYSALLQL-------PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (513)
Q Consensus 181 ------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-------~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~ 247 (513)
.+.++|++|++.+++.+||.||+.+...... .....+...++.++++.++|.+..++.+ ..
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~ 152 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV------ST 152 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc------cc
Confidence 2358999999999999999999977532100 0001233457889999999988777755 49
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|.|||+++|++ ..+..+||++++|++|++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHV 231 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999986 489999988887 478899999999999999
Q ss_pred EEEeChHHH
Q 010314 327 LFFGETLAC 335 (513)
Q Consensus 327 v~~G~~~~~ 335 (513)
++.|++++.
T Consensus 232 ~~~g~~~~~ 240 (262)
T PRK09984 232 FYDGSSQQF 240 (262)
T ss_pred EEeCCHHHh
Confidence 999988653
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=347.40 Aligned_cols=216 Identities=19% Similarity=0.272 Sum_probs=179.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~---- 179 (513)
++++||++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|++ +|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVE-----DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEEC-----CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHH
Confidence 46899999984 346999999999999999999999999999999999995 565 4999999986432
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC------CchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLP------GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~------~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSG 250 (513)
....++|++|++.+++.+|+.|++.+....... ....+..+++.++++.++|. +..++.+. ..|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN-----EGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc-----cCcCH
Confidence 123489999999999999999999775432110 01112345688999999997 45555332 25999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc-CCEEEEEeCCeEEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFF 329 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~ 329 (513)
||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|.|||+++|++ +.+..+ ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999987789999999987 477777 899999999999999
Q ss_pred eChHHH
Q 010314 330 GETLAC 335 (513)
Q Consensus 330 G~~~~~ 335 (513)
|+++++
T Consensus 227 g~~~~~ 232 (243)
T TIGR01978 227 GDVELA 232 (243)
T ss_pred cCHHHh
Confidence 988753
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=344.53 Aligned_cols=216 Identities=37% Similarity=0.584 Sum_probs=181.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCCCceeEEEECCEeCCC--
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~---~~~~~~G~I~i~G~~~~~-- 179 (513)
.+.|+|+++.+++.+ ..+.+|+|+||++++||+++|+||||||||||+++|+|+++ |+ +|+|.++|.+...
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHH
Confidence 468999999996421 13579999999999999999999999999999999999998 65 4999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc--hhhHHHHHHH-HHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVED-AIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~-~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++.+++.+||+||+.+......+.. .......+++ .++.+++.++.++.+ +.|||||+|||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl 152 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV------KGISGGERRRV 152 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc------cCcCHHHHHHH
Confidence 23569999999999999999999988654332211 1122234555 899999987776644 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|+...++.++||++++|++|++++.|
T Consensus 153 ~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 153 SIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998778999999998745789999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=342.16 Aligned_cols=205 Identities=27% Similarity=0.355 Sum_probs=172.2
Q ss_pred EEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----C
Q 010314 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----Y 181 (513)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~ 181 (513)
+++|+++.|.+. .+.+|+++||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+.... .
T Consensus 1 ~~~~l~~~~~~~---~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 1 ELKNLSFSYPDG---ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS---GEVLVDGKDLTKLSLKELR 74 (211)
T ss_pred CceeEEEecCCC---CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccCCHHHHH
Confidence 367899988421 1469999999999999999999999999999999999999875 9999999865321 2
Q ss_pred ceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 182 GSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 182 ~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
+.++|++|++. .++.+||.||+.+....... ......+.+.++++.++|.+..++.+ ..|||||||||+|||
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~lar 147 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEEEIEERVEEALELVGLEGLRDRSP------FTLSGGQKQRVAIAG 147 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHHHHHHHHHH
Confidence 46899999974 35678999999875432211 11233456788999999988777654 499999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++..+||++++|++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999987789999988886 57888999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=352.24 Aligned_cols=222 Identities=22% Similarity=0.279 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeccc----cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 010314 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (513)
.++++||++.|.... ...+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ---GTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccc
Confidence 478999999995310 113579999999999999999999999999999999999999875 999999987532
Q ss_pred -------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCC
Q 010314 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LS 249 (513)
..+.++|++|++ .+++.+||.||+.+..............+++.++++.++|. ...++.+ .+||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~~LS 152 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP------RQLS 152 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh------hhCC
Confidence 124699999996 46778999999976543211111123345688999999996 5666644 4999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+. ..+..+||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 89999988886 57888999999999999999
Q ss_pred EeChHHHH
Q 010314 329 FGETLACL 336 (513)
Q Consensus 329 ~G~~~~~~ 336 (513)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=350.07 Aligned_cols=216 Identities=23% Similarity=0.350 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|. .+.+|+|+||++++|++++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGYG-----TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS---GTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEEC-----CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---cEEEECCEEhHHCCHHH
Confidence 588999999984 3469999999999999999999999999999999999998875 999999986421
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHH--hc-CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSAL--LQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~--~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|+..+++.+|+.||+.++.. .. ...........+.++++.++|.+..++.+ ..|||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 147 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL------TDLSGGQRQRA 147 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc------ccCCHHHHHHH
Confidence 12459999999988888999999987421 10 11111223456889999999988777754 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..|++++.
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 999999999999999999999999999999999999987789999988887 578899999999999999999988765
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=347.88 Aligned_cols=223 Identities=21% Similarity=0.259 Sum_probs=181.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (513)
+.++++||++.|. .+.+|+++||++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 5 ~~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 5 PKMEARGLSFFYG-----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred cEEEEeeeEEEEC-----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999864 100125999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++ .||.||+.+..............++++++++.+++.+...... +..+..|||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~q 156 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL--HESALGLSGGQQQ 156 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh--hCCcccCCHHHHH
Confidence 1246999999998887 5999999876533211111223456888999999854322211 2245699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||+++|+. .++.++||++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 78999988887 57889999999999999999998876
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 235 ~~ 236 (253)
T PRK14242 235 IF 236 (253)
T ss_pred HH
Confidence 53
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=349.11 Aligned_cols=218 Identities=20% Similarity=0.298 Sum_probs=181.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 11 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 11 PQIKVENLNLWYG-----EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eeEEEeeeEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 4689999999884 3469999999999999999999999999999999999987510 125999999987421
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++ +|++||+.+...... .......+.+.++++.+++. +..++ .+..|||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSg 157 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG-ANKKDLDGVVENALRSAALWDETSDRLKS------PALSLSG 157 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCCcchhhhhcC------ChhhCCH
Confidence 1246999999998888 899999987653321 11122345678899999984 33444 4459999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ ++|||+++|+. .++.++||++++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 78999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 987764
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=348.59 Aligned_cols=223 Identities=25% Similarity=0.299 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---C
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE---M 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~---~ 179 (513)
.++++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+. ..+|+|.++|.+.. .
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEeC-----CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999988730 12599999998753 1
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++.+||.||+.+....+. ........+.+.++++.+++........ +..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~q 156 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRL--NDYPSNLSGGQRQ 156 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhh--ccChhhCCHHHHH
Confidence 12469999999999999999999987653321 1111233456788999999853211111 2245699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++..+||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 68999988886 57889999999999999999999877
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 235 ~~ 236 (253)
T PRK14267 235 VF 236 (253)
T ss_pred HH
Confidence 64
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=341.22 Aligned_cols=207 Identities=29% Similarity=0.360 Sum_probs=175.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
+.++|+++.|.+ +. .|+||++.+||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~~-----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYGE-----QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS---GRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeCC-----Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCcCCHhHc
Confidence 468999998842 12 39999999999999999999999999999999999875 999999987532 234
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||+||+.+........ ....++++.++++.++|.+..++.+ .+||||||||++|||||
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGLKL-TAEDRQAIEVALARVGLAGLEKRLP------GELSGGERQRVALARVL 143 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhcccccccCc-cHHHHHHHHHHHHHcCCHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 6999999999999999999997753221111 1233456889999999988877754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|++ .++.++||++++|++|+++..|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999975 489999988886 5788999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=352.83 Aligned_cols=215 Identities=25% Similarity=0.294 Sum_probs=182.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++||++.|.+ .+.+|+||||+|++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYPD----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQK---GKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcCC----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEECCccccHHH
Confidence 689999999842 2459999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++. .+...||.||+.+...... ....+..+.+.++++.++|.+..++.+ ..|||||||||+|
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrv~l 147 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLC-LPPIEIRKRVDRALAEIGLEKYRHRSP------KTLSGGQGQCVAL 147 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHCCCHHHhcCCc------ccCCHHHHHHHHH
Confidence 246999999975 3556899999987643321 111233456889999999998877754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
||||+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|+.. ++ ..||++++|++|++++.|+++++.
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999877999999988874 56 569999999999999999988764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-43 Score=351.53 Aligned_cols=216 Identities=26% Similarity=0.373 Sum_probs=184.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
+.++||++.|.+ .+.+|+|+||++++||+++|+||||||||||+++|+|++++.. |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYPD----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS---GEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEECccccchHH
Confidence 689999999842 2459999999999999999999999999999999999999875 999999987531
Q ss_pred -CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 -PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 -~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++ .++ ..||.||+.+...... ....+..+++.++++.++|.++.++.+ .+||||||||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LS~Gq~qrv 146 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLG-LSKEEVEKRVKEALKAVGMEGFENKPP------HHLSGGQKKRV 146 (275)
T ss_pred HHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCchhhcCCh------hhCCHHHHHHH
Confidence 124699999996 344 4699999987643211 111234456889999999998887754 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. ..+..+||++++|++|++++.|+++++.
T Consensus 147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987799999988886 5788899999999999999999998875
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 226 ~ 226 (275)
T PRK13639 226 S 226 (275)
T ss_pred c
Confidence 3
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=344.70 Aligned_cols=211 Identities=20% Similarity=0.320 Sum_probs=179.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYYG-----QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEeC-----CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHHH
Confidence 46899999984 3469999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcC-ChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+|+.||+.+....... ...+.+.++++.++ +.+..++. +..|||||||||+|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~l~~~~~l~~~~~~~------~~~LS~G~~qrv~l 142 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALPR----RSRKIPDEIYELFPVLKEMLGRR------GGDLSGGQQQQLAI 142 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc----chHHHHHHHHHHHHhHHHHhhCC------hhhCCHHHHHHHHH
Confidence 124699999999999999999999876433211 12234577788776 55666664 45999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+. +++..+||++++|++|++++.|+.+++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999999874 89999988886 578889999999999999999988765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=342.43 Aligned_cols=219 Identities=24% Similarity=0.389 Sum_probs=199.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-Cce
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGS 183 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~ 183 (513)
.+++++|+++| +.+++++|+||.+++|++++++|+|||||||++++|+|+++|+. |+|.++|.+.... ..+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~---G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccC---ceEEEcCcchhhhhhhh
Confidence 58999999999 45689999999999999999999999999999999999999975 9999999876433 467
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
|||+|.+..|+|.+||.|.|.|.+.++.-. ..+.++.+..+|+++++.....+.+. +||.|++|++.+..+++
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~LkGm~-~~e~~~~~~~wLer~~i~~~~~~kIk------~LSKGnqQKIQfisavi 146 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMP-KAEIQKKLQAWLERLEIVGKKTKKIK------ELSKGNQQKIQFISAVI 146 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhcCCc-HHHHHHHHHHHHHhccccccccchHH------HhhhhhhHHHHHHHHHh
Confidence 999999999999999999999988876322 24667789999999999988877665 99999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
++|+++|||||+|||||.+.+.+-+.+.+++++|.|||+++|.. +.+.++||++++|++|+.|.+|+..++...|
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999999999999999999999999999999988876 6899999999999999999999999887644
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=352.94 Aligned_cols=218 Identities=22% Similarity=0.267 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|.+ ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA---GTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 5899999999842 12459999999999999999999999999999999999999975 9999999875321
Q ss_pred -CceEEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 -YGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 -~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++ .+++..||.||+.+...... ....+..+++.++++.+||.+..++.+ ..|||||||||+|
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qrv~l 151 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG-VPREEMVERVDQALRQVGMEDFLNREP------HRLSGGQKQRVAI 151 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCC-CCHHHHHHHHHHHHHHcCChhhhhCCc------ccCCHHHHHHHHH
Confidence 24699999997 36667899999987643321 111234567899999999998888755 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|++. ++. .||++++|++|++++.|+++++..
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999875 899999999874 565 599999999999999999887653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=351.40 Aligned_cols=218 Identities=22% Similarity=0.326 Sum_probs=185.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 10 ~~l~i~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 10 TTFALRNVSFRVP-----GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE---GEILLDAQPLESWSSK 81 (265)
T ss_pred ceEEEeeEEEEEC-----CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEehhhCCHH
Confidence 3689999999984 2469999999999999999999999999999999999998875 999999986421
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|+..+++.+||.||+.+....... .......+++.++++.++|.+..++.+ ..||||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qr 155 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV------DSLSGGERQR 155 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc------ccCCHHHHHH
Confidence 124699999998888899999999775321100 001123456889999999988777754 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||+++|+. .++.++||++++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999765 89999988886 57889999999999999999998876
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 235 ~~ 236 (265)
T PRK10575 235 LM 236 (265)
T ss_pred hc
Confidence 53
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=350.67 Aligned_cols=222 Identities=21% Similarity=0.298 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeccc----cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 010314 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (513)
.++++||+++|..+. ...+.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCC
Confidence 589999999995211 012469999999999999999999999999999999999999875 999999987532
Q ss_pred ----CCceEEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHH
Q 010314 180 ----PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGq 252 (513)
..+.++|++|++. +++.+||.+++.+...........+..+.+.++++.++|. +..++. +..|||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~ 154 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY------PHMLAPGQ 154 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC------chhcCHHH
Confidence 1246999999974 6778899999987654332111123345688999999994 566654 45999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|+. +++..+||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999864 89999988887 57888999999999999999998
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 87654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=351.23 Aligned_cols=218 Identities=26% Similarity=0.352 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.|.+ .+.+|+||||++.+||+++|+|+||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 3 ~l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYSG----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---GSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeCC----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 4789999999842 2359999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++. .+...||.||+.+...... .......++++++++.++|.+..++.+ +.|||||||||+|
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qrl~l 148 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG-LDEETVAHRVSSALHMLGLEELRDRVP------HHLSGGEKKRVAI 148 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHCCChhHhcCCc------ccCCHHHHHHHHH
Confidence 246899999963 2335799999987653221 111233456889999999988877754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+||||||||+|||+.++..++++|++++++ |.|||+++|++ +++.++||++++|++|++++.|+++++..
T Consensus 149 araL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999999999999875 89999988887 57889999999999999999999988753
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=350.66 Aligned_cols=218 Identities=22% Similarity=0.330 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..+.++||++.|. .+.+|+|+||++.+||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 6 ~~l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGYG-----KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH---GHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEEC-----CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEEhhhCCHH
Confidence 4789999999994 3469999999999999999999999999999999999998875 9999999864321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcC---CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+||+||+.+...... ........+.+.++++.++|.+..++.+ ..||||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qr 151 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV------DTLSGGQRQR 151 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc------ccCChHHHHH
Confidence 2468999999999989999999976421110 0011223456889999999988777754 5999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|++|++++.|++.+
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999864 89999988887 57899999999999999999999877
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 54
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=345.65 Aligned_cols=223 Identities=25% Similarity=0.295 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFG-----QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEEC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 589999999984 246999999999999999999999999999999999998742 0135999999987532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++.+++.+||.||+.+...... .....+..+.+.++++.++|.+...... +..+.+|||||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgG~~qrv 155 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRL--DAPAGKLSGGQQQRL 155 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhh--cCCcccCCHHHHHHH
Confidence 12469999999988889999999987643221 1111233456889999999864211111 224569999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ |+|+|+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999864 78999988886 4788899999999999999999987764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=342.79 Aligned_cols=213 Identities=24% Similarity=0.314 Sum_probs=182.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++||++.|.+ + ..|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 2 l~~~~l~~~~~~-----~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYHH-----L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS---GSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEECC-----c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCeecCcCChhhc
Confidence 689999999842 1 238999999999999999999999999999999999875 999999987532 124
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+|+.||+.+....... ......+++.++++.+||.+..++.+ ..|||||||||+|||||
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral 144 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLK-LNAAQREKLHAIARQMGIEDLLARLP------GQLSGGQRQRVALARCL 144 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccC-CCHHHHHHHHHHHHHcCcHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 699999999999999999999765321111 11233456889999999998887755 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+|++|||||||+|||+.++..+.++|+++.++ |+|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999764 89999988887 5788999999999999999999887654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=345.19 Aligned_cols=212 Identities=25% Similarity=0.411 Sum_probs=182.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
+.++++|+++.|. .+.+|+|+||++.+|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 ~~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 2 NEIEFKEVSYSSF-----GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE---GSILIDGVDIKTIDVI 73 (241)
T ss_pred ceEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcChH
Confidence 3589999999984 3469999999999999999999999999999999999998875 999999986421
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++ .||+||+.+..... . ....++.++++.++|. +..++. +..|||||||||+
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~~qrl~ 141 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK--G---EKNVDVEYYLSIVGLNKEYATRD------VKNLSGGEAQRVS 141 (241)
T ss_pred HhhhcEEEEecCchhch-hhHHHHHhcchhhc--C---cHHHHHHHHHHHcCCCHHHhhCC------cccCCHHHHHHHH
Confidence 1346999999998887 69999997643221 1 1234678899999996 566664 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+. .++.++||++++|++|+++..|++.++.
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999864 89999988887 5788899999999999999999987754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=340.36 Aligned_cols=211 Identities=28% Similarity=0.287 Sum_probs=178.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|.+.. ....+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 6 ~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eeEEECCEEcccCCHHH
Confidence 689999999985311 01359999999999999999999999999999999999998875 9999999875321
Q ss_pred -----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+||.||+.+....... ...+..+++.++++.++|.+..++.+ ..||||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Ge~qr 154 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGE-SSRQSRNGAKALLEQLGLGKRLDHLP------AQLSGGEQQR 154 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhCCh------hhCCHHHHHH
Confidence 24699999999999999999999876433211 11234567889999999988777754 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|+.. .+ ..||++++|++|++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999764 899999888874 55 4599999999999875
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=344.48 Aligned_cols=223 Identities=22% Similarity=0.312 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 589999999984 3469999999999999999999999999999999999986 321135999999987531
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++.+|+.||+.+...........+..+++.++++.+++........ ...+..||||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL--KSNAMELSGGQQQR 156 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh--hCCcCcCCHHHHHH
Confidence 134699999999999999999999765432211111223456788999999864221111 12456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999975 58999988886 578899999999999999999998775
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 235 ~ 235 (252)
T PRK14256 235 F 235 (252)
T ss_pred H
Confidence 4
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=347.72 Aligned_cols=215 Identities=29% Similarity=0.420 Sum_probs=183.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
+.++|+++.|. .+.+|+|+||.+++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSAG-----GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEEcccCCHHHH
Confidence 67899999984 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHh--cC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+.++|++|++.+++.+||.||+.+.... .. .....+..+++.++++.+++.+..++.+ ..|||||||||+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 147 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM------STLSGGERQRVH 147 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHHHHHHH
Confidence 23589999998888889999999774211 00 0011123456889999999988777754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ ..+.++||++++|++|++++.|+.+++
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 99999999999999999999999999999999999987789999988887 578899999999999999999988765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=346.45 Aligned_cols=219 Identities=22% Similarity=0.279 Sum_probs=181.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++ |....+|+|.++|.+...
T Consensus 12 ~~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 12 SKIQVRNLNFYYG-----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred ceEEEEEEEEEeC-----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999986 211135999999987521
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++ .||+||+.+...........+..++++++++.+++.+ ..++ .+..|||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~ 159 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQ------SGYSLSG 159 (260)
T ss_pred cchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhc------CCCCCCH
Confidence 1346999999998887 7999999876432211111233456889999999843 3343 4569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||||+.+|+||||||||+|||+.++..+++.|++++ ++.|||+++|++ ..+..+||++++|++|+++..|
T Consensus 160 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 237 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFG 237 (260)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999996 478999988886 5788899999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
+++++.
T Consensus 238 ~~~~~~ 243 (260)
T PRK10744 238 NTDTIF 243 (260)
T ss_pred CHHHHH
Confidence 987764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=337.37 Aligned_cols=208 Identities=26% Similarity=0.372 Sum_probs=177.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++||++.|. .+++|+|+++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPAS---GSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEcccCChhcc
Confidence 46899999884 24689999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+|+.||+.+......... ...+.++.++++.++|.+..++.+ +.|||||||||+|||||
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLN-AEQQEKVVDAAQQVGIADYLDRLP------EQLSGGQRQRVALARCL 143 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCCcc-HHHHHHHHHHHHHcCcHHHhhCCc------ccCCHHHHHHHHHHHHH
Confidence 69999999999999999999976532211111 123456788999999988877754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
+.+|+||||||||+|||+.++..+.++|+++.++ |.|||+++|+. .++.++||++++|++|++++.|+
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999864 89999988886 57788999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=353.08 Aligned_cols=220 Identities=18% Similarity=0.275 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|.++......+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET---GQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccccccc
Confidence 589999999995321112359999999999999999999999999999999999999875 999999976421
Q ss_pred -----CCceEEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHH
Q 010314 180 -----PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGG 251 (513)
.++.++|++|++. +++ .||+||+.+..... .....+..+.+.++++.++|. +..++.+ ..||||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~~~~------~~LS~G 154 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPEDYVKRSP------FELSGG 154 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHhcCCh------hhCCHH
Confidence 1246899999963 444 59999998764322 111123345678899999994 6766644 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||+++|+. +++.++||++++|++|++++.|
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999764 89999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
+++++.
T Consensus 234 ~~~~~~ 239 (289)
T PRK13645 234 SPFEIF 239 (289)
T ss_pred CHHHHh
Confidence 987764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=345.97 Aligned_cols=219 Identities=23% Similarity=0.321 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~i~~v~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYG-----SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEEC-----CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 589999999984 2469999999999999999999999999999999999986410 125999999986521
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCCCHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~LSGG 251 (513)
..+.++|++|++.+++.+||+||+.+.............++.++++++.++|.+ ..++ .+.+||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~G 152 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDK------PGGGLSGG 152 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhC------CcccCCHH
Confidence 124699999999999999999999876543211111233456788999999842 3333 45699999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe------CCe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGN 325 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~ 325 (513)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+. .++.++||++++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999964 68999988886 57889999999997 799
Q ss_pred EEEEeChHHHH
Q 010314 326 TLFFGETLACL 336 (513)
Q Consensus 326 iv~~G~~~~~~ 336 (513)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 99999987764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=346.06 Aligned_cols=223 Identities=20% Similarity=0.273 Sum_probs=181.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|.+...
T Consensus 11 ~~l~i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 11 EVYQINGMNLWYG-----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred ceEEEeeEEEEEC-----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 4689999999984 3469999999999999999999999999999999999986 321125999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++. ||+||+.+...........+..++++++++.+++.+...... +..+.+|||||||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l--~~~~~~LS~Gq~q 162 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRL--HTQALSLSGGQQQ 162 (259)
T ss_pred cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhh--hCCcccCCHHHHH
Confidence 12469999999988875 999999876433211111233456788899999854211111 1245699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|+|+++|+. ..+.++||++++|++|+++..|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999965 78999988887 57889999999999999999999887
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 241 ~~ 242 (259)
T PRK14274 241 MF 242 (259)
T ss_pred Hh
Confidence 64
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=346.68 Aligned_cols=218 Identities=20% Similarity=0.267 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.|.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 6 ~~l~i~~l~~~~~~~---~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 6 SIIVFKNVSFQYQSD---ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS---GEIFYNNQAITDDNFE 79 (269)
T ss_pred ceEEEEEEEEEcCCC---CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHH
Confidence 368999999998531 2359999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 --YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 --~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+.++|++|++. +++..|+.+|+.+....... ......+.+.++++.+++.+..++. +..|||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~------~~~LS~G~~qrl~ 152 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAV-PYDEMHRRVSEALKQVDMLERADYE------PNALSGGQKQRVA 152 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCC-CHHHHHHHHHHHHHHcCCchhhhCC------cccCCHHHHHHHH
Confidence 246899999974 67778999999876432211 1123345678899999998877764 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|++. ++.. ||++++|++|++++.|+++++.
T Consensus 153 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999764 899999999874 5664 9999999999999999988764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-43 Score=362.16 Aligned_cols=207 Identities=23% Similarity=0.355 Sum_probs=180.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
|.+ ||+++|.+ + .+ |+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 l~~-~l~k~~~~-----~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLGD-----L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK---GRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeCC-----E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 556 88888842 2 23 8999999999999999999999999999999999875 999999986421
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|+..+|+.+||+||+.++.. ....++++++++.++|.+..++.+ ++|||||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qRv 137 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLLDRYP------GSLSGGEKQRV 137 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhhhCCc------ccCCHHHHHHH
Confidence 13579999999999999999999987532 123456889999999998887754 59999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|+|+++|+. .++..+||++++|++|+++..|+++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999865 89999988886 588999999999999999999999887
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 217 ~~ 218 (352)
T PRK11144 217 WA 218 (352)
T ss_pred Hh
Confidence 54
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=348.23 Aligned_cols=218 Identities=21% Similarity=0.295 Sum_probs=184.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..+.++|+++.|.+ ..+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 6 ~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 6 VMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS---GEIKIDGITISKENLK 79 (271)
T ss_pred eEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEecCcCCHH
Confidence 46899999999842 13469999999999999999999999999999999999999875 999999987532
Q ss_pred -CCceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 -PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 -~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.++.++|++|++. .++.+||+||+.+....... ...+....+.++++.++|.+..++.+ ..||||||||++
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 152 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKV-PPKKMKDIIDDLAKKVGMEDYLDKEP------QNLSGGQKQRVA 152 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhCCc------ccCCHHHHHHHH
Confidence 1346899999974 56778999999876432211 11233456889999999998887754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..++++|++++++ ++|||+++|++. ++. .||++++|++|+++..|+++++.
T Consensus 153 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 153 IASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EAI-LADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HHh-hCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999866 589999999874 554 79999999999999999887654
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=340.40 Aligned_cols=215 Identities=28% Similarity=0.379 Sum_probs=185.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
+.++|+++.|. .+.+++|+|+++++|++++|+|+||||||||+++|+|+++|.. |+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFYG-----GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS---GEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 46899999984 3469999999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+|+.||+.+........ .....+.+.++++.++|.+..++.+ ..|||||||||+|||||
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrl~laral 145 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLP-KAEIKERVAEALDLVQLEGYANRKP------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHHH
Confidence 6999999999998999999998765433211 1233456788999999988887754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+..+..
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999865 89999988887 5788999999999999999999876653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=350.14 Aligned_cols=222 Identities=20% Similarity=0.276 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.|.+. .+.+|++|||++.+||+++|+||||||||||+++|+|+++|+...+|+|.++|.+....
T Consensus 4 ~~l~i~~l~~~~~~~---~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 4 NIVEFKHVSFTYPDS---KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred ceEEEEEEEEEcCCC---CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH
Confidence 468999999998531 23599999999999999999999999999999999999988632348999999875321
Q ss_pred --CceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 --YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 --~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+.++|++|++. +++..||.||+.+...... ....+..+++.++++.++|.+..++. ++.|||||||||+
T Consensus 81 ~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~------~~~LS~G~~qrv~ 153 (282)
T PRK13640 81 DIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA-VPRPEMIKIVRDVLADVGMLDYIDSE------PANLSGGQKQRVA 153 (282)
T ss_pred HHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC-CCHHHHHHHHHHHHHHCCChhHhcCC------cccCCHHHHHHHH
Confidence 246899999974 5677899999987543221 11123456788999999999887774 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+.. .+ ..||++++|++|++++.|+++++.
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999865 899999999874 55 579999999999999999988765
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 3
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=343.09 Aligned_cols=222 Identities=19% Similarity=0.265 Sum_probs=180.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCCC-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~---~~~~~~~~G~I~i~G~~~~~- 179 (513)
+.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+ .++. ..+|+|.++|.+...
T Consensus 2 ~~l~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYG-----DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEEC-----CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccc
Confidence 3689999999984 34699999999999999999999999999999999997 3442 125999999987532
Q ss_pred ------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHH
Q 010314 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqr 253 (513)
..+.++|++|++.+++ .|+.||+.+....+.........+.++++++.++|.+...... +..+..||||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~ 152 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKL--KESAFALSGGQQ 152 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhh--hCCcccCCHHHH
Confidence 1246999999998887 5999999876543211111223456788999999864321111 124569999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++. +++|||+++|++ ..+.++||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999995 478999988887 4788999999999999999999988
Q ss_pred HHH
Q 010314 334 ACL 336 (513)
Q Consensus 334 ~~~ 336 (513)
++.
T Consensus 231 ~~~ 233 (250)
T PRK14245 231 KIF 233 (250)
T ss_pred HHh
Confidence 764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=342.92 Aligned_cols=222 Identities=26% Similarity=0.327 Sum_probs=180.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYYN-----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 589999999984 3469999999999999999999999999999999999853 531125999999987521
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++ +||.||+.+..............+.+.++++.+++.+...... +..+..||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRL--HDSALGLSGGQQQR 156 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHH--hcCcccCCHHHHHH
Confidence 1346999999998887 7999999876433211111223456788899998853211111 22456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|+||||||||+|||+.++..+.++|+++.+ ++|||+++|+. +++..+||++++|++|++++.|+..++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999965 68999988886 578899999999999999999998876
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 235 ~ 235 (252)
T PRK14239 235 F 235 (252)
T ss_pred H
Confidence 4
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=340.77 Aligned_cols=215 Identities=28% Similarity=0.406 Sum_probs=185.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++|+++.|. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|.. |+|.++|.+... ..+
T Consensus 1 i~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS---GRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 46899999984 3469999999999999999999999999999999999998875 999999987532 135
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+|+.||+.+........ .....+.+.++++.+++.+..++.+ ..|||||+||++|||+|
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrl~laral 145 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHP-KAKIKARVEELLELVQLEGLGDRYP------NQLSGGQRQRVALARAL 145 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhcCCC-HHHHHHHHHHHHHHcCCHhHhhCCh------hhCCHHHHHHHHHHHHH
Confidence 6999999999999999999998765432111 1223456789999999988877755 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+|+++||||||+|||+.++..+++.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999875 89999988887 5788999999999999999999987654
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=362.06 Aligned_cols=208 Identities=27% Similarity=0.390 Sum_probs=179.9
Q ss_pred eEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 010314 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (513)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---------~ 180 (513)
||++.|.+ + .+ |+||.+++||+++|+|||||||||||++|+|+++|++ |+|.++|++... .
T Consensus 4 ~l~~~~~~-----~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRLGD-----F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEECC-----E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccCccccccchh
Confidence 78888732 2 34 9999999999999999999999999999999999875 999999987421 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+|+.+||+||+.++.... . ..+..++++++++.++|.+..++.+ .+|||||||||+|||
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~--~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGqkqRvalAr 144 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA-R--PSERRISFERVIELLGIGHLLGRLP------GRLSGGEKQRVAIGR 144 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc-C--hhHHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHH
Confidence 356999999999999999999998865321 1 1233456889999999998887754 499999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|+. +++..+||++++|++|+++..|+++++..
T Consensus 145 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 145 ALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999999999999999999999999865 89999988887 57889999999999999999999887653
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=344.93 Aligned_cols=217 Identities=23% Similarity=0.281 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-----~~~ 179 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+ ...
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA---GEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCcccccccccc
Confidence 589999999984 2469999999999999999999999999999999999999875 999999976 321
Q ss_pred C---------CceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCC
Q 010314 180 P---------YGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKG 247 (513)
Q Consensus 180 ~---------~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~ 247 (513)
. .+.++|++|++ .+++.+|+.||+.+...........+....+.++++.+++.+ ..++. +..
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~ 151 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL------PTT 151 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC------Ccc
Confidence 1 23589999997 467788999999764322111111233456788999999964 56664 459
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||+++|+. ..+..+||++++|++|++
T Consensus 152 LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGRV 230 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999765 89999988886 578889999999999999
Q ss_pred EEEeChHHHH
Q 010314 327 LFFGETLACL 336 (513)
Q Consensus 327 v~~G~~~~~~ 336 (513)
++.|+++++.
T Consensus 231 ~~~~~~~~~~ 240 (258)
T PRK11701 231 VESGLTDQVL 240 (258)
T ss_pred EEeCCHHHHh
Confidence 9999987754
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=342.31 Aligned_cols=219 Identities=21% Similarity=0.281 Sum_probs=181.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWYG-----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEEC-----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 3689999999984 246999999999999999999999999999999999998651 0135999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++ +|++||+.+...........+..+++.++++.++|.+ ..++ .+..|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~ 150 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK------SALKLSG 150 (251)
T ss_pred ccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhC------CcccCCH
Confidence 1346999999999887 8999999876533211111233456788999998853 3333 4569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||+++|+. .++.++||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999976 58999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14270 229 KTEKIF 234 (251)
T ss_pred CHHHHh
Confidence 988764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=346.00 Aligned_cols=223 Identities=20% Similarity=0.285 Sum_probs=182.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (513)
..++++||++.|. .+.+|+|+||.|++|++++|+||||||||||+++|+|+++|. ...+|+|+++|.+...
T Consensus 18 ~~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFYG-----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEEC-----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 4799999999984 346999999999999999999999999999999999998741 0125999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqr 253 (513)
..+.++|++|++.+++. ||.||+.+....+.. ....+..+++.++++.++|.+...... +..+..||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~ 169 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL--HEPGTGLSGGQQ 169 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHh--hCCcccCCHHHH
Confidence 12468999999988875 999999876543211 111223456788999999964221111 124569999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|+. ..+..+||++++|++|+++..|+++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999975 68999988886 5788999999999999999999887
Q ss_pred HHH
Q 010314 334 ACL 336 (513)
Q Consensus 334 ~~~ 336 (513)
++.
T Consensus 248 ~~~ 250 (267)
T PRK14235 248 KMF 250 (267)
T ss_pred HHH
Confidence 754
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=341.78 Aligned_cols=222 Identities=20% Similarity=0.279 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|++++....+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYG-----KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEEC-----CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 578999999994 2469999999999999999999999999999999999975311125999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++ .||+||+.+....+.. .......+++.++++.++|.+...... +..+..|||||||||+|
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL--KQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh--cCCcccCCHHHHHHHHH
Confidence 1346999999998887 6999999876433211 011223456788999999954322211 22456999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||+++|+. .++..+||++++|++|++++.|++.+..
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999864 88999988886 5788999999999999999999987754
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=348.82 Aligned_cols=220 Identities=22% Similarity=0.320 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEecccc-ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 105 SVVWKDLTVTIKGKRR-YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
.++++||+++|.+... ..+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE---GKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeccccccH
Confidence 5899999999963211 13469999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 --PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 --~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++. ++ ..||.+|+.|...... ....+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qr 152 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLG-IPPEEIRERVDESLKKVGMYEYRRHAP------HLLSGGQKQR 152 (280)
T ss_pred HHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcC-CCHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHH
Confidence 1346899999973 44 4699999988654321 111234567899999999998888755 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|++. ++.. ||++++|++|++++.|++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 999999999875 5655 99999999999999999988
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
+..
T Consensus 231 ~~~ 233 (280)
T PRK13633 231 IFK 233 (280)
T ss_pred Hhc
Confidence 754
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=339.31 Aligned_cols=214 Identities=26% Similarity=0.377 Sum_probs=184.3
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
+.++|+++.|. . ++|+|+|+++.+||+++|+|+||||||||+++|+|+++|+. |+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~---G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS---GKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcCcCChhHc
Confidence 46889999884 2 38999999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+|+.||+.+...... ....+..+.+.++++.++|.+..++.+ +.|||||||||+|||||
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~laral 144 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKRK-VDKKEIERKVLEIAEMLGIDHLLNRKP------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhHHhcCc------ccCCHHHHHHHHHHHHH
Confidence 79999999999999999999987643321 111234456788999999988887754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+|++++|||||+|||+.++..+.+.|++++.+ |+|+|+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999765 89999999987 5788899999999999999999876653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=341.20 Aligned_cols=222 Identities=23% Similarity=0.338 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (513)
.++++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 589999999984 24699999999999999999999999999999999998753 11135999999987531
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.++.++|++|++.+++ +|+.||+.+.............++.+.++++.+++.+...... +..+..||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 154 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRL--KKSALGLSGGQQQR 154 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHH--hcCCCCCCHHHHHH
Confidence 1346899999998887 8999999876533211111233456788899998753211111 12456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|+. ..+..+||++++|++|+++..|+++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 78999988886 578899999999999999999988775
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 233 ~ 233 (250)
T PRK14240 233 F 233 (250)
T ss_pred H
Confidence 4
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=341.33 Aligned_cols=222 Identities=22% Similarity=0.290 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (513)
.++++||++.|. .+.+|+|+||++.+|++++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFYH-----KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEEC-----CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 588999999984 3469999999999999999999999999999999999998751 124999999986421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++. |+.||+.+....+.........+.++++++.++|.+...... +..+..||||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~Gq~qr 155 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNL--HKSGLALSGGQQQR 155 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHh--hCCcccCCHHHHHH
Confidence 13569999999998875 999999876543211111123355777888888754222211 23556999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|++|||||||+|||+.++..+.++|+++. ++.|||+++|+. ..+..+||++++|++|++++.|+++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 999999999999999999999999999999999999985 588999999887 578899999999999999999998776
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 234 ~ 234 (251)
T PRK14249 234 F 234 (251)
T ss_pred H
Confidence 4
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=344.77 Aligned_cols=219 Identities=22% Similarity=0.297 Sum_probs=179.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 20 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 20 HILEVKDLSIYYG-----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred ceEEEEEEEEEeC-----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 3689999999984 3469999999999999999999999999999999999864 210125999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++. |+.||+.+.............++.+.++++.+++. +..++ .+..|||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSg 167 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHS------SALSLSG 167 (268)
T ss_pred ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhc------CcccCCH
Confidence 13469999999988875 99999987643221111112345577888888884 33444 4459999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|++++.|
T Consensus 168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 68999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
+++++.
T Consensus 246 ~~~~~~ 251 (268)
T PRK14248 246 QTEQIF 251 (268)
T ss_pred CHHHHH
Confidence 987754
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=340.66 Aligned_cols=222 Identities=21% Similarity=0.330 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+++||++++||+++|+||||||||||+++|+|++++ ....+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYG-----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeC-----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 589999999984 34699999999999999999999999999999999999874 10125999999986531
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++ .||+||+.+.............++.++++++.+++.+...... +..+.+||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~qr 154 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL--NKPGTRLSGGQQQR 154 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHH--hCChhhcCHHHHHH
Confidence 1346999999999887 8999999876432211111223455788899999854221111 22456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++ +.+..+||++++|++|+++..|+++++
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999975 78999988886 478899999999999999999998776
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 233 ~ 233 (250)
T PRK14262 233 V 233 (250)
T ss_pred H
Confidence 4
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=343.44 Aligned_cols=223 Identities=21% Similarity=0.282 Sum_probs=182.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (513)
..++++||++.|. .+.+|+|+||++.+||+++|+||||||||||+++|+|+++|. ...+|+|.++|.+...
T Consensus 19 ~~l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 19 IALSTKDLHVYYG-----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred eEEEEeeEEEEEC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 4799999999984 346999999999999999999999999999999999998641 0135999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++ .||+||+.++..............++.++++.++|.+...... ...++.|||||||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~G~~q 170 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDL--HKSALTLSGGQQQ 170 (267)
T ss_pred CChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhh--cCCcccCCHHHHH
Confidence 1346999999998887 5999999876432211111233456788999999854322221 2356799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|++|||||||+|||+.++..+.++|+++. ++.|||+++|++ .++.++||++++|++|++++.|++.+
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999996 478999988887 47889999999999999999999877
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 249 ~~ 250 (267)
T PRK14237 249 IF 250 (267)
T ss_pred Hh
Confidence 64
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=333.22 Aligned_cols=195 Identities=31% Similarity=0.539 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (513)
.+.|+||+|.|+.++ .++.+|+++||.+++||+++|+||||||||||+++|+|+++|....+|+|.++|.+... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 579999999997643 45679999999999999999999999999999999999998311125999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+++.+||+||+.+..... .++ .+..||||||||++|||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------------~~~------~~~~LS~Ge~qrl~lar 131 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------GNE------FVRGISGGERKRVSIAE 131 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc------------------------ccc------chhhCCHHHHHHHHHHH
Confidence 356999999999999999999997643110 222 44589999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||+.+|+||||||||+|||+.++..+++.|++++++ +.|+|+++||..+++.++||++++|++|++++.|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999865 6788887888767889999999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=340.73 Aligned_cols=199 Identities=31% Similarity=0.414 Sum_probs=169.7
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHH
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (513)
|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+........+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS---GGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 578999999999999999999999999999999999875 99999998754322235899999999999999999987
Q ss_pred HHHhcCCC-chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 010314 206 SALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284 (513)
Q Consensus 206 ~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~ 284 (513)
......+. ...+..+.+.++++.++|.+..++.+ .+|||||||||+|||+|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 53211111 11233456789999999988777754 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 285 LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 285 ~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
.+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|+..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999764 89999988886 57889999999999999998886543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=340.41 Aligned_cols=219 Identities=22% Similarity=0.280 Sum_probs=180.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (513)
.+.++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 4 LLSAQDVNIYYG-----DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred EEEEeeeEEEEC-----CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence 588999999984 3469999999999999999999999999999999999987631 125999999987531
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCCCHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~LSGG 251 (513)
..+.++|++|++.+++.+|+.||+.+...........+..+.+.++++.+++.. ..++ .++.||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~LS~G 152 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKT------PATGLSGG 152 (252)
T ss_pred CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcC------CcccCCHH
Confidence 124699999999999999999999875432211111223445667777777642 3333 45699999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|+. ..+..+||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 68999988887 57888999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 87764
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=326.82 Aligned_cols=217 Identities=26% Similarity=0.353 Sum_probs=186.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
|+.+||+++.. ++.+|++||++++|||++||+||||||||||||+|+|.+.|++ |++.++|.+...+
T Consensus 2 i~a~nls~~~~-----Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~---G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 2 IRAENLSYSLA-----GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred eeeeeeEEEee-----cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC---CeEeeCCcChhhCCHHHH
Confidence 68899999984 5679999999999999999999999999999999999999885 9999999875433
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.+..+.++|+..+-...||.|.+.++..-.. +....+..+.++++|...++.+++.+.. ..|||||||||.+|
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y------~~LSGGEqQRVqlA 147 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY------RTLSGGEQQRVQLA 147 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch------hhcCchHHHHHHHH
Confidence 2456889999888667899999988753221 1211244456889999999999988754 39999999999999
Q ss_pred HHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 260 RELVM------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 260 raL~~------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|.|+. ++++||||||||+||...+..++++.++++++|..|+++.|+. ..+..+||||++|++||++..|++.
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHH
Confidence 99986 4569999999999999999999999999999999999988886 5788999999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 227 ~vlt 230 (259)
T COG4559 227 DVLT 230 (259)
T ss_pred HhcC
Confidence 8763
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=340.24 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYG-----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEEC-----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 578999999984 3469999999999999999999999999999999999988630 125999999986521
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++.+++ .||.||+.+..............+++.++++.+++.+...... +..+.+|||||||||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~LS~G~~qrv 154 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL--KSHAFGLSGGQQQRL 154 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHh--hcCcccCCHHHHHHH
Confidence 1246999999999887 8999999876432211111223456778888888853221111 224569999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+|||||+.+|+||||||||+|||+.++..++++|+++++ +.|||+++|++ .++..+||++++|++|++++.|+++++
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999975 58999988887 578999999999999999999987765
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=339.72 Aligned_cols=198 Identities=26% Similarity=0.351 Sum_probs=169.2
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CCceEEEEc-CCcccCCC
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVE-RETTLIGS 196 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~-Q~~~l~~~ 196 (513)
.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+... ..+.++|++ |.+.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS---GEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 4579999999999999999999999999999999999999875 999999976421 134689997 55778889
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
+||+||+.+........ ..+..+.+.++++.++|.+..++.+. .||||||||++||+||+.+|+||||||||+
T Consensus 110 ~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~------~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 110 LPVIDSFYLLAAIYDLP-PARFKKRLDELSELLDLEELLDTPVR------QLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred CcHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCChhHhcCChh------hCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99999998765432111 12334567889999999888877554 999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 277 HLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||+.++..+.+.|++++++ ++|||+++|++ +++..+||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999765 88999988887 5788999999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=334.05 Aligned_cols=200 Identities=27% Similarity=0.394 Sum_probs=171.5
Q ss_pred eEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 010314 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (513)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---------~ 180 (513)
||+++|.+ +.+ |+||++++ |+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 5 ~l~~~~~~-----~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLPD-----FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDG---GTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecCC-----eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEecccccchhhhhhH
Confidence 88888842 334 99999999 9999999999999999999999999875 999999976421 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+++.+|+.||+.+..... .....++++.++++.+++.+..++.+ ..|||||||||+|||
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~ 144 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNRYP------AQLSGGEKQRVALAR 144 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhhcCc------ccCCHHHHHHHHHHH
Confidence 246999999999999999999998764321 11223456889999999988777654 499999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||+.+|+||||||||+|||+.++..+.++|++++++ |+|||+++|+. .++..+||++++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999865 89999988886 5788899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=345.50 Aligned_cols=218 Identities=20% Similarity=0.228 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|.+. ....+|+|+||++.+||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEKE--SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE---GKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCCC--CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEECCcCCHHH
Confidence 58999999999532 12359999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++. .++..||.||+.+....... ...+..++++++++.++|.+..++.+ ..|||||||||+|
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 151 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGI-PREEMIKRVDEALLAVNMLDFKTREP------ARLSGGQKQRVAV 151 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCC-CHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHHHHH
Confidence 1346999999974 56678999999876432211 11233456889999999988877744 5999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||+++|+.. .+. .||++++|++|+++..|+++++.
T Consensus 152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999875 999999888874 555 69999999999999999988765
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=345.74 Aligned_cols=218 Identities=22% Similarity=0.316 Sum_probs=181.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMP 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-----~~~G~I~i~G~~~~~~ 180 (513)
|+++||++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+. ..+|+|.++|.+....
T Consensus 2 l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVARR-----HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEEC-----CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 78999999984 3469999999999999999999999999999999999998850 0149999999875321
Q ss_pred -----CceEEEEcCCcccCCCCCHHHHHHHHHHhcC---CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH
Q 010314 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq 252 (513)
.+.++|++|++.+++.+||.||+.+...... .....+..+.+.++++.++|.+..++.+ ..|||||
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~ 150 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV------TTLSGGE 150 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHH
Confidence 2357999999876667899999977532110 0001223456788999999988776644 5999999
Q ss_pred HHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 253 RRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 253 rqRv~IAraL~---------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
||||+|||||+ .+|++|||||||+|||+.++..++++|+++.++ |.|||+++|++ .++..+||++++|+
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~ 229 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLA 229 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEE
Confidence 99999999999 599999999999999999999999999999875 89999988886 57888999999999
Q ss_pred CCeEEEEeChHHH
Q 010314 323 NGNTLFFGETLAC 335 (513)
Q Consensus 323 ~G~iv~~G~~~~~ 335 (513)
+|++++.|+++++
T Consensus 230 ~G~i~~~g~~~~~ 242 (272)
T PRK13547 230 DGAIVAHGAPADV 242 (272)
T ss_pred CCeEEEecCHHHH
Confidence 9999999988765
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=338.13 Aligned_cols=219 Identities=21% Similarity=0.278 Sum_probs=179.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++.+||+++|+|+||||||||+++|+|+.+ |+...+|+|.++|.+...
T Consensus 4 ~~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYG-----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEEC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 3689999999984 2469999999999999999999999999999999999865 421125999999986521
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++ .||.||+.+.............++.+.+.++.+++. +..++ .+.+|||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~------~~~~LS~ 151 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHE------SALSLSG 151 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhc------CcccCCH
Confidence 1346999999998888 699999987643321111112234567788888774 23333 4569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||+++|++ ..+.++||+|++|++|+++..|
T Consensus 152 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 152 GQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFA 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976 58999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
++.+..
T Consensus 230 ~~~~~~ 235 (252)
T PRK14255 230 DTKQMF 235 (252)
T ss_pred CHHHHh
Confidence 887764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=342.27 Aligned_cols=223 Identities=22% Similarity=0.294 Sum_probs=181.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 24 ~~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 24 TALEVRNLNLFYG-----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred cEEEEEEEEEEEC-----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 4689999999984 2469999999999999999999999999999999999987410 125999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
.++.++|++|++.+++. ||+||+.+.............++.++++++.+++.+...... +..+..|||||||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~q 175 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRL--HENAFGLSGGQQQ 175 (272)
T ss_pred cCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHh--hCCcccCCHHHHH
Confidence 13569999999988886 999999876433211111223456788899999864211111 2245699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|+||||||||+|||+.++..+.++|+++++ +.|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999976 68999988886 57889999999999999999998876
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
..
T Consensus 254 ~~ 255 (272)
T PRK14236 254 LF 255 (272)
T ss_pred Hh
Confidence 53
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=338.36 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=179.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+++||++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSYG-----NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999986 210125999999987421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSGG 251 (513)
..+.++|++|++.+++ .||+||+.+..............+.+.++++.+++. +..++ .+.+||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~G 151 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDR------NAQAFSGG 151 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhcc------ChhhCCHH
Confidence 1346999999998886 799999987543221111112335678889999984 23343 45699999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||+++|++ .++.++||++++|++|+++..|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 68999988886 57889999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 87754
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=340.18 Aligned_cols=224 Identities=22% Similarity=0.303 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. ...+|+|+||++++|++++|+|+||||||||+++|+|+++|++ ..+|+|.++|.+...
T Consensus 7 ~l~~~nl~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYYD-----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEeC-----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 689999999984 2369999999999999999999999999999999999998742 125999999976421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++ +|+.||+.+...........+..+.+.++++.+++.+..+... ...+..||||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~qr 158 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKI--HKSALDLSGGQQQR 158 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHh--cCCcccCCHHHHHH
Confidence 1346999999998888 8999999876432211111223456788999999854322221 23456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeC-----CeEEEE
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN-----GNTLFF 329 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~-----G~iv~~ 329 (513)
|+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ .|.|||+++|++ .++.++||+|++|++ |++++.
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999999875 489999988886 578999999999999 999999
Q ss_pred eChHHHHH
Q 010314 330 GETLACLQ 337 (513)
Q Consensus 330 G~~~~~~~ 337 (513)
|+++++..
T Consensus 238 ~~~~~~~~ 245 (261)
T PRK14258 238 GLTKKIFN 245 (261)
T ss_pred CCHHHHHh
Confidence 99988643
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=344.18 Aligned_cols=222 Identities=21% Similarity=0.306 Sum_probs=179.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (513)
..++++||++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 12 ~~l~i~nl~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISYG-----TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEEC-----CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4699999999984 3469999999999999999999999999999999999987310 125999999986421
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
.++.++|++|++.+++. ||+||+.+.+...... ....+.+.++++.+++........ +..+..|||||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~q 161 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT--GDMDELVERSLRKAAVWDECKDKL--NESGYSLSGGQQQ 161 (269)
T ss_pred CCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc--HHHHHHHHHHHHHhCCcchhhhhh--CCCcccCCHHHHH
Confidence 12469999999988884 9999998765432111 123456778888888742111111 2345699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC-----------
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN----------- 323 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~----------- 323 (513)
||+|||||+.+|+||||||||+|||+.++..++++|+++++ +.|||+++|++ .++..+||++++|++
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999999964 78999988886 578999999999996
Q ss_pred CeEEEEeChHHHHH
Q 010314 324 GNTLFFGETLACLQ 337 (513)
Q Consensus 324 G~iv~~G~~~~~~~ 337 (513)
|++++.|++.++..
T Consensus 240 g~~~~~~~~~~~~~ 253 (269)
T PRK14259 240 GYLVEFNETKKIFN 253 (269)
T ss_pred ceEEEeCCHHHHHh
Confidence 67899999988753
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=341.16 Aligned_cols=222 Identities=22% Similarity=0.291 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR--MYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~--~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++++.. .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYYN-----TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEEC-----CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 689999999984 24699999999999999999999999999999999999875311 35999999986521
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
....++|++|++.+++ +||+||+.+....+.........+.+.++++.+++.+...... +.++..||||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 158 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKL--NKSALGLSGGQQQR 158 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHh--cCCcccCCHHHHHH
Confidence 1246999999999887 8999999876543211111223456788899998843211111 23566999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe-----CCeEEEEe
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-----NGNTLFFG 330 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-----~G~iv~~G 330 (513)
|+|||||+.+|++|||||||+|||+.++..+++.|+++++ ++|||+++|++ +++.++||++++|+ +|++++.|
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999975 68999988887 58899999999998 59999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
++.++.
T Consensus 237 ~~~~~~ 242 (259)
T PRK14260 237 VTTQIF 242 (259)
T ss_pred CHHHHh
Confidence 998764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=337.92 Aligned_cols=222 Identities=20% Similarity=0.271 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (513)
.+.++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|.+...
T Consensus 6 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWYG-----EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEEC-----CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 689999999984 34699999999999999999999999999999999999753 11125999999987532
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++. ||+||+.+.............+..+.++++.+++.+...... +..+..||||||||
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 157 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRL--HDSALSLSGGQQQR 157 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHh--hcChhhCCHHHHHH
Confidence 12468999999988875 999999886543211111233456788889988853211111 22456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|+. .++.++||++++|++|+++..|+++++
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999975 58999988886 578889999999999999999998775
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 236 ~ 236 (253)
T PRK14261 236 F 236 (253)
T ss_pred H
Confidence 4
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=344.55 Aligned_cols=220 Identities=23% Similarity=0.296 Sum_probs=179.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC-
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~- 179 (513)
...+.++|+++.|. .+.+|+|+||.|++||+++|+||||||||||+++|+|+.+ |....+|+|.++|.+...
T Consensus 37 ~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 37 KPHVVAKNFSIYYG-----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred ceEEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 34689999999984 2459999999999999999999999999999999999854 300024999999986421
Q ss_pred ------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCC
Q 010314 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LS 249 (513)
.++.++|++|++.+++. ||.||+.+.............++.+.++++.+++. +..++ .+..||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~LS 184 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDK------NALGLS 184 (286)
T ss_pred ccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhC------ChhhCC
Confidence 13469999999988875 99999988643321111122345677888988874 33444 456999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|+. .++.++||++++|++|+++..
T Consensus 185 gGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 68999988886 578899999999999999999
Q ss_pred eChHHHH
Q 010314 330 GETLACL 336 (513)
Q Consensus 330 G~~~~~~ 336 (513)
|++.++.
T Consensus 263 g~~~~~~ 269 (286)
T PRK14275 263 APTAQLF 269 (286)
T ss_pred CCHHHHH
Confidence 9987764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=317.31 Aligned_cols=211 Identities=28% Similarity=0.317 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++++++++... .....||++|++.|++||.+||+|||||||||||-+|+|+..|++ |+|.+.|++...
T Consensus 6 ii~~~~l~ktvg~~-~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ss---GeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQG-EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS---GEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCC-CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCC---ceEEEcCcchhhcCHHH
Confidence 68889999887543 245679999999999999999999999999999999999999875 999999987421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
+.+.+|||||...++|+||..||+..++.++.... .+......+.|+.+||.+..+. ||.+|||||+||
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~-~~~~~~A~~lL~~vGLg~Rl~H------yP~qLSGGEQQR 154 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS-ADSRAGAKALLEAVGLGKRLTH------YPAQLSGGEQQR 154 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCCcc-ccHHHHHHHHHHHhCccccccc------CccccCchHHHH
Confidence 23679999999999999999999999887764321 2345567889999999876654 677999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|+||||++..|+|||.||||-+||..+..+|.++|-.+.. .|.|.|++||++ .+..-|||++-|.+|+++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999975 599999999987 4677899999999999874
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=342.07 Aligned_cols=223 Identities=19% Similarity=0.229 Sum_probs=182.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (513)
..+.++||++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. ...+|+|.++|.+...
T Consensus 20 ~~l~i~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 20 PAMAAVNLTLGFA-----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cEEEEeeEEEEEC-----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 4789999999994 346999999999999999999999999999999999998862 0135999999987532
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++ .||+||+.+...........+....+.++++.++|.+...... ...+..||||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l--~~~~~~LSgGq~qr 171 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRL--SDSPFRLSGGQQQL 171 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHh--hCCcccCCHHHHHH
Confidence 1346899999998887 7999999876432211111233345678899999975332211 12456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|+. .++.++||++++|++|++++.|+++++
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999988886 578899999999999999999998876
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 250 ~ 250 (276)
T PRK14271 250 F 250 (276)
T ss_pred H
Confidence 4
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=338.29 Aligned_cols=217 Identities=22% Similarity=0.285 Sum_probs=179.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-----~~~ 179 (513)
.++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+.+|.. |+|.++|.+ ...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSYG-----GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH---GTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEeC-----CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEEeccccccccccc
Confidence 589999999984 2468999999999999999999999999999999999998874 999999865 321
Q ss_pred -C--------CceEEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCC
Q 010314 180 -P--------YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKG 247 (513)
Q Consensus 180 -~--------~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~ 247 (513)
. .+.++|++|++. +++.+|+.+|+.+................+.++++.+++. ...++.+ ..
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~ 148 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLP------RA 148 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCc------hh
Confidence 1 135899999974 4566799999865432111111112345678999999996 4666644 59
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.++ |.|||+++|+. ..+..+||++++|++|++
T Consensus 149 LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGRV 227 (253)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998754 89999988876 578889999999999999
Q ss_pred EEEeChHHHH
Q 010314 327 LFFGETLACL 336 (513)
Q Consensus 327 v~~G~~~~~~ 336 (513)
++.|+++++.
T Consensus 228 ~~~~~~~~~~ 237 (253)
T TIGR02323 228 VESGLTDQVL 237 (253)
T ss_pred EEECCHHHHh
Confidence 9999887654
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=379.24 Aligned_cols=223 Identities=21% Similarity=0.233 Sum_probs=188.2
Q ss_pred ceEEEEeEEEEEecccc------ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010314 104 ASVVWKDLTVTIKGKRR------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (513)
..|+++||++.|..... ..+.+|+||||.|++||+++|+|+||||||||+++|+|+++|++ |+|.++|.++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG---GEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---cEEEECCEEC
Confidence 46999999999952110 12469999999999999999999999999999999999999875 9999999865
Q ss_pred CC--------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCC
Q 010314 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMK 246 (513)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~ 246 (513)
.. .++.++|++|++ .+++.+||.|++.+...........+..+++.++|+.+||. +..++ +++
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~------~~~ 462 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR------YPH 462 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC------Ccc
Confidence 32 124699999997 58999999999987643321111123446788999999995 56666 455
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+|||||||||+|||||+.+|+||||||||+|||+.++..|+++|++++++ |.|||+++|+. ..+..+||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999865 89999988876 58889999999999999
Q ss_pred EEEEeChHHHH
Q 010314 326 TLFFGETLACL 336 (513)
Q Consensus 326 iv~~G~~~~~~ 336 (513)
+++.|++++++
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999998875
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=338.34 Aligned_cols=222 Identities=19% Similarity=0.290 Sum_probs=179.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (513)
.-+++|+++.|. .+.+|+|+||++.+||+++|+|+||||||||+++|+|+.+ |....+|+|.++|.+...
T Consensus 5 ~~~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 5 HASVKNLNLWYG-----SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEEeeeEEEEEC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 357899999884 3469999999999999999999999999999999999976 210125999999986421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++. ||.||+.+....+. .......++.+.++++.++|.+...... +..+..|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~q 156 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRL--KDSAFELSGGQQQ 156 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHh--hcChhhCCHHHHH
Confidence 13468999999988875 99999987643321 1111223456788999999965321111 1245699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|+||||||||+|||+.++..+.+.|+++. +|+|||+++|+. .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999986 489999999987 47889999999999999999998876
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 235 ~~ 236 (251)
T PRK14244 235 IF 236 (251)
T ss_pred Hh
Confidence 54
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=319.01 Aligned_cols=216 Identities=28% Similarity=0.379 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.+.+++++.+|.++ ...+|+|||+.+.+||.++++||||||||||||+++|+.+|.. |+|.+||+++..+...-
T Consensus 3 ~l~~~~~sl~y~g~---~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~---G~i~l~~r~i~gPgaer 76 (259)
T COG4525 3 MLNVSHLSLSYEGK---PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAER 76 (259)
T ss_pred eeehhheEEecCCc---chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCccc---ceEEECCEeccCCCccc
Confidence 46778899999653 2569999999999999999999999999999999999999975 99999999987776667
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
|.|+|++.++|.+||.+|+.|+..++.-. ..++.+.+.+.+..+||.+..++ ++.+|||||||||.|||||+.
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~-k~~R~~~a~q~l~~VgL~~~~~~------~i~qLSGGmrQRvGiARALa~ 149 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIE-KAQRREIAHQMLALVGLEGAEHK------YIWQLSGGMRQRVGIARALAV 149 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhCccccccc------ceEeecchHHHHHHHHHHhhc
Confidence 99999999999999999999998876433 24677789999999999988776 455999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChHH
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETLA 334 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~~ 334 (513)
+|++|+||||+++||.-+++++-.+|-++.+ .|+.++++||+. +++.-+++++++|+ .|+++..-+++-
T Consensus 150 eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~df 221 (259)
T COG4525 150 EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLDF 221 (259)
T ss_pred CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCCH
Confidence 9999999999999999999999999999874 599999988876 57888999999997 589998777763
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=374.57 Aligned_cols=218 Identities=20% Similarity=0.332 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|. ++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ ..+|+|.++|.+....
T Consensus 5 ~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTFG-----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEeC-----CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 589999999984 346999999999999999999999999999999999999862 0249999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcC-C-CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-P-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~-~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
.+.++|++|++.+++.+||+||+.+...... . ....+..++++++++.++|.+..++.++ +|||||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgGqkqrv 152 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG------NLGLGQQQLV 152 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh------hCCHHHHHHH
Confidence 2459999999999999999999987643221 1 1112334568899999999877777554 9999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. ..+..+||++++|++|++++.|+++++
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999999999987799999988876 578899999999999999999988654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=374.29 Aligned_cols=216 Identities=20% Similarity=0.356 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||+++|. ++.+|+|+||++.+||+++|+||||||||||+|+|+|+++|+. |+|.++|.+....
T Consensus 4 ~i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAFP-----GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEeC-----CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 589999999994 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcC--CC-chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL--PG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~--~~-~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+||+||+.++..... .. ...+.++++.++++.+||.+..++.++ +||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qr 149 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG------ELSIGEQQM 149 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh------hCCHHHHHH
Confidence 2469999999999999999999987543210 11 112234568899999999887777554 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. .++..+||+|++|++|+++..|+++++
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999999999999999987789999988886 578899999999999999999987654
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=337.95 Aligned_cols=216 Identities=18% Similarity=0.216 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCC---C
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-~~~G~I~i~G~~~~~---~ 180 (513)
.++++|+++.| + +.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|++... .
T Consensus 4 ~l~~~~l~~~~-~-----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A-----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-c-----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 68999999988 2 359999999999999999999999999999999999998810 024999999987532 1
Q ss_pred CceEEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh---HHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++. +.+.+|+.+++.+.+...... ...+.+.++++.++|.+ ..++. +..||||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~------~~~LS~Gq~qr 148 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP---ADDATLTAALEAVGLENAARVLKLY------PFEMSGGMLQR 148 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCC---hHHHHHHHHHHHcCCCChhhhhhcC------CcccCHHHHHH
Confidence 246999999974 556689999986643221111 22356889999999976 34553 45999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++..+||++++|++|++++.|++++
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 89999988886 57888999999999999999999877
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 228 ~~ 229 (254)
T PRK10418 228 LF 229 (254)
T ss_pred Hh
Confidence 64
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=332.64 Aligned_cols=209 Identities=28% Similarity=0.403 Sum_probs=177.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|..+. ..+.+|+|+||++++|++++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCC-cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEhHhcCHhHH
Confidence 68999999985321 12569999999999999999999999999999999999999875 999999987531
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+|+.||+.+...........+..+.+.++++.+||.+..++.+ +.||||||||++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrv~ 151 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP------HNLSGGQKQRVA 151 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHH
Confidence 125699999999999989999999886543211111234457889999999988877754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||+|+.+|++|||||||+|||+.++..+++.|+++.+ .++|||+++|+.. +.++||++++|++|++
T Consensus 152 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 152 IARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999986 4899999999873 4689999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=321.40 Aligned_cols=218 Identities=25% Similarity=0.295 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..|+++||.++| +...+|++||+..+.|+++.|||.|||||||+|+||.-+..|.. |.|.++|+.+..
T Consensus 5 ~~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~---G~I~v~geei~~k~~~ 76 (256)
T COG4598 5 NALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA---GSIRVNGEEIRLKRDK 76 (256)
T ss_pred cceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCC---ceEEECCeEEEeeeCC
Confidence 368889998888 45679999999999999999999999999999999999999975 999999975311
Q ss_pred -------C-------CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC
Q 010314 180 -------P-------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (513)
Q Consensus 180 -------~-------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~ 245 (513)
. +.+.++|+|+..|+.++||.||+..+..--+.....+..++.+.+|..+|+.+..+. ||
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~------YP 150 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADA------YP 150 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhc------Cc
Confidence 0 124799999999999999999997654322222334566778899999999887765 67
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.. ..+.+.+.+|++|++|.
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGK 229 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeecce
Confidence 79999999999999999999999999999999999999999999999999999999989886 58889999999999999
Q ss_pred EEEEeChHHHH
Q 010314 326 TLFFGETLACL 336 (513)
Q Consensus 326 iv~~G~~~~~~ 336 (513)
+-+.|+|++++
T Consensus 230 iEE~G~P~qvf 240 (256)
T COG4598 230 IEEEGPPEQVF 240 (256)
T ss_pred ecccCChHHHh
Confidence 99999999875
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=340.25 Aligned_cols=219 Identities=19% Similarity=0.275 Sum_probs=178.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|.+...
T Consensus 23 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 23 VVFDTQNLNLWYG-----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred eEEEEeeeEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 3689999999984 2469999999999999999999999999999999999986 211125999999987521
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++ .||.||+.+................+.++++.+++. +..++ .+..|||
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~------~~~~LSg 170 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHD------NAYGLSG 170 (271)
T ss_pred ccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhc------CcccCCH
Confidence 1346999999998887 499999987653321111112234567777777653 23333 4569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||+++|+. ..+..+||++++|++|++++.|
T Consensus 171 Ge~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999975 78999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
++.++.
T Consensus 249 ~~~~~~ 254 (271)
T PRK14238 249 DTDKIF 254 (271)
T ss_pred CHHHHH
Confidence 987753
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=372.13 Aligned_cols=211 Identities=21% Similarity=0.322 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|. .+.+|+|+||.+++|++++|+|||||||||||++|+|+++|+. |+|.++|.+....
T Consensus 11 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQYS-----GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEeC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999994 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
...++|++|++.+++.+||+||+.+... . ....++++.++++.++|.+..++.++ +|||||||||+|
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~---~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~l 151 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLP--K---RQASMQKMKQLLAALGCQLDLDSSAG------SLEVADRQIVEI 151 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhcccc--c---chHHHHHHHHHHHHcCCCccccCChh------hCCHHHHHHHHH
Confidence 1358999999999999999999977431 1 12334668899999999887777554 999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. ..+..+||++++|++|++++.|++++.
T Consensus 152 a~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 152 LRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999999999999999987899999988886 578899999999999999999988765
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=339.73 Aligned_cols=222 Identities=23% Similarity=0.236 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEecc----ccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 010314 105 SVVWKDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (513)
.++++||++.|... ....+.+|+|+||++++|++++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s---G~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ---GNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccc
Confidence 47899999998520 0013569999999999999999999999999999999999998874 999999986431
Q ss_pred -------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCC
Q 010314 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LS 249 (513)
..+.++|++|++ .+++..|+.|++.+................++++++.+++. ...++. +..||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~~LS 153 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKR------PPQLS 153 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCC------CccCC
Confidence 124699999997 46778999999876432111111123345688999999996 566664 45999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|+|+++|++ ..+..+||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999865 89999988886 57888999999999999999
Q ss_pred EeChHHHH
Q 010314 329 FGETLACL 336 (513)
Q Consensus 329 ~G~~~~~~ 336 (513)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99987754
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=347.59 Aligned_cols=226 Identities=19% Similarity=0.235 Sum_probs=183.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|.+ ..+.+|+|+||+|++||++||+|+||||||||+++|+|+.++. ...+|+|.++|.++..
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 47899999999953 2346999999999999999999999999999999999998631 0125999999987631
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
.++.++|++|++.+++ .|++||+.|+.............+.+.++++.++|.+..+..+ ..++..|||||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~--~~~~~~LSgGqkq 232 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDL--DKAGNALSGGQQQ 232 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhh--hCCcccCCHHHHH
Confidence 2357999999999885 7999999886433211111112344678889998854333322 2356799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||+++|+. ..+.++||+|++|++|++++.|++.+
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGETKT 310 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 68999988887 57888999999999999999999998
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 311 l~~ 313 (329)
T PRK14257 311 IFI 313 (329)
T ss_pred Hhc
Confidence 753
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=341.13 Aligned_cols=218 Identities=22% Similarity=0.291 Sum_probs=179.4
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC-
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~- 179 (513)
...++++||++.|. .+.+|+|+||.|.+||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 37 ~~~l~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 37 ETVIEARDLNVFYG-----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CceEEEEEEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 34689999999984 2469999999999999999999999999999999999986310 125999999986421
Q ss_pred ------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCCC
Q 010314 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~LS 249 (513)
..+.++|++|++.+++. ||.||+.+........ ....++++++++.++|.. ..++ .+.+||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~i~~~~~~------~~~~LS 182 (285)
T PRK14254 112 DVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYD--GDIDERVEESLRRAALWDEVKDQLDS------SGLDLS 182 (285)
T ss_pred ccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCc--HHHHHHHHHHHHHcCCCchhHHHHhC------CcccCC
Confidence 13569999999988875 9999998765432111 123456889999999853 3344 456999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEE-EEeCCeEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC-LLSNGNTLF 328 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~-vL~~G~iv~ 328 (513)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ .|||+++|+. ..+..+||+++ +|++|++++
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999764 7999988886 57888999975 679999999
Q ss_pred EeChHHHH
Q 010314 329 FGETLACL 336 (513)
Q Consensus 329 ~G~~~~~~ 336 (513)
.|++.++.
T Consensus 261 ~g~~~~~~ 268 (285)
T PRK14254 261 FDDTDKIF 268 (285)
T ss_pred eCCHHHHH
Confidence 99887653
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=333.88 Aligned_cols=201 Identities=22% Similarity=0.256 Sum_probs=170.3
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC----CCCceeEEEECCEeCCC---CCceEEEEcCCcc--cCC
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH----SARMYGEVFVNGAKSEM---PYGSYGFVERETT--LIG 195 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~----~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~--l~~ 195 (513)
+|+|+|+++++|++++|+||||||||||+++|+|+++| + +|+|.++|++... ..+.++|++|++. +++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57899999999999999999999999999999999988 5 4999999987532 1246999999974 567
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh---hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~---~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllD 272 (513)
.+|+.|++.+......... ....+++.++++.++|. +..++.+ ..|||||||||+|||||+.+|+|||||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~------~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS-KQARALILEALEAVGLPDPEEVLKKYP------FQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred ccCHHHHHHHHHHHcCccH-HHHHHHHHHHHHHcCCCchHHHHhCCh------hhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 7899999976543221111 23345688999999997 4555544 499999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 273 EPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||+|||+.++..+.+.|++++++ |+|||+++|+. +++..+||++++|++|+++..|+++++.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999864 89999988886 5788999999999999999999987764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=328.63 Aligned_cols=197 Identities=24% Similarity=0.306 Sum_probs=167.6
Q ss_pred EEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---C-----
Q 010314 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---M----- 179 (513)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~----- 179 (513)
++|+++.|. ++.+|+|+||.+++||+++|+||||||||||+++|+|+++|+. |+|.++|.+.. .
T Consensus 1 i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKFG-----DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEEC-----CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccchhhHHH
Confidence 468888884 3469999999999999999999999999999999999999875 99999998732 1
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+|++||+.+...... ....+..+.+.++++.++|.+..++.+ .+||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qr~~l 145 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKK-LSKKEKREKKKEALEKVGLNLKLKQKI------YELSGGEQQRVAL 145 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCchhhhcCCh------hhCCHHHHHHHHH
Confidence 12469999999999999999999988654321 111234457889999999988877754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
||||+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|++. . ..+||++++|
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 146 ARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred HHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 99999999999999999999999999999999999877899999888874 4 4689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=372.28 Aligned_cols=216 Identities=19% Similarity=0.331 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+. |+|.++|.+....
T Consensus 5 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSFG-----PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK---GTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCc---cEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhc--CCC----chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQ--LPG----FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~--~~~----~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq 252 (513)
.+.++|++|++.+++.+||+||+.++.... ... ...+..+++.++++.+||.+..++.+ .+|||||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG~ 150 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV------ANLSISH 150 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch------hhCCHHH
Confidence 235999999999999999999997653210 001 11233456889999999987777755 4999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. ..+..+||++++|++|++++.|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecch
Confidence 9999999999999999999999999999999999999999987899999988875 578899999999999999999988
Q ss_pred HHH
Q 010314 333 LAC 335 (513)
Q Consensus 333 ~~~ 335 (513)
+++
T Consensus 230 ~~~ 232 (510)
T PRK09700 230 SDV 232 (510)
T ss_pred hhC
Confidence 764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=333.65 Aligned_cols=217 Identities=18% Similarity=0.256 Sum_probs=178.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~--~~~~~~~~G~I~i~G~~~~~-- 179 (513)
..++++||++.|. .+.+|+||||++++||++||+|+||||||||+++|+|+ ++|. +|+|.++|.+...
T Consensus 6 ~~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 6 PILEIKNLHASVN-----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLE 77 (252)
T ss_pred ceEEEEeEEEEeC-----CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCC
Confidence 3689999999984 24699999999999999999999999999999999998 4565 4999999987432
Q ss_pred ---CC-ceEEEEcCCcccCCCCCHHHHHHHHHHhcC-----CC-chhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCC
Q 010314 180 ---PY-GSYGFVERETTLIGSLTVREYLYYSALLQL-----PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (513)
Q Consensus 180 ---~~-~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----~~-~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~L 248 (513)
.. ..++|++|++.+++.+|+.+++.+...... .. ...+..+.+.++++.+++. ...++.+. ..|
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~L 152 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN-----EGF 152 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc-----cCC
Confidence 11 247899999999999999999876532110 00 0012235678899999997 45555432 259
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc-CCEEEEEeCCeEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTL 327 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv 327 (513)
||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|++ ..+..+ ||++++|++|+++
T Consensus 153 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~ 231 (252)
T CHL00131 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ-RLLDYIKPDYVHVMQNGKII 231 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999987789999988886 456666 8999999999999
Q ss_pred EEeChHH
Q 010314 328 FFGETLA 334 (513)
Q Consensus 328 ~~G~~~~ 334 (513)
+.|+++.
T Consensus 232 ~~~~~~~ 238 (252)
T CHL00131 232 KTGDAEL 238 (252)
T ss_pred EecChhh
Confidence 9998874
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=333.46 Aligned_cols=215 Identities=25% Similarity=0.359 Sum_probs=171.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++|+++.|.+. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKPD---GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN---GRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCCC---CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCeehHhcCHHHH
Confidence 4689999988421 2469999999999999999999999999999999999999875 999999986421 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++ .||.||+.+... .. ....+.+.++..++.+..+....+ +..+.+||||||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr 146 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADP----GM---SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR 146 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCC----CC---CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH
Confidence 346999999998875 699999976321 10 112233444445554443322100 12457999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. ++ ..||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~ 223 (237)
T cd03252 147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDEL 223 (237)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999974 899999999874 56 46999999999999999998776
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 224 ~~ 225 (237)
T cd03252 224 LA 225 (237)
T ss_pred Hh
Confidence 53
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=377.31 Aligned_cols=222 Identities=21% Similarity=0.225 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE----- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~----- 178 (513)
..++++||++.|.... ....+|+||||++.+||++||+||||||||||+++|+|+++|+. |+|.++|....
T Consensus 11 ~~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~---G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 11 DVLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG---GLVQCDKMLLRRRSRQ 86 (623)
T ss_pred ceEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---eEEEECCEEecccccc
Confidence 3689999999995321 12469999999999999999999999999999999999998875 99999885320
Q ss_pred -----C---------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh---HHhhhh
Q 010314 179 -----M---------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLI 239 (513)
Q Consensus 179 -----~---------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---~~~~~v 239 (513)
. ..+.+|||+|++ .+++.+||.||+.+...........+.++++.++++.+||.+ ..++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-- 164 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR-- 164 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC--
Confidence 0 113699999997 688999999999987654211112234567889999999953 4454
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEE
Q 010314 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 240 g~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v 318 (513)
++++|||||||||+|||||+.+|+||||||||++||+.++.+++++|++++++ |+|||+++|+. ..+..+||+|
T Consensus 165 ----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri 239 (623)
T PRK10261 165 ----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRV 239 (623)
T ss_pred ----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEE
Confidence 55699999999999999999999999999999999999999999999999865 89999988876 5788999999
Q ss_pred EEEeCCeEEEEeChHHHH
Q 010314 319 CLLSNGNTLFFGETLACL 336 (513)
Q Consensus 319 ~vL~~G~iv~~G~~~~~~ 336 (513)
++|++|++++.|++.+++
T Consensus 240 ~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEeeCCeecccCCHHHhh
Confidence 999999999999987764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=379.96 Aligned_cols=218 Identities=22% Similarity=0.350 Sum_probs=188.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++|+|.. ....+|+|+|++|++||.+||+|+||||||||+|+|+|+++|.. |+|++||.+...
T Consensus 470 g~I~~~nvsf~y~~---~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~---G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 470 GEIEFENVSFRYGP---DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLDGVDLNDIDLA 543 (709)
T ss_pred ceEEEEEEEEEeCC---CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEeHHhcCHH
Confidence 47999999999963 22369999999999999999999999999999999999999975 999999988532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC-----CCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM-----KGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~-----~~LSGGqr 253 (513)
.++.+|||+|++.+|. -|++||+.++ .|. ...+.+.++++..|..++....+.|+.++ .+||||||
T Consensus 544 ~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~----~p~---~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 544 SLRRQVGYVLQDPFLFS-GSIRENIALG----NPE---ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred HHHhheeEEcccchhhc-CcHHHHHhcC----CCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 2468999999999995 4999999653 222 23466788888899988877766655443 56999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+.+.|++.|.++. .|+|+|+++|+++ ..+.||+|++|++|+++..|+.+
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ 692 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHE 692 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEccCCceeccCCHH
Confidence 99999999999999999999999999999999999999986 4789999999974 67889999999999999999999
Q ss_pred HHHHH
Q 010314 334 ACLQH 338 (513)
Q Consensus 334 ~~~~~ 338 (513)
+++..
T Consensus 693 ell~~ 697 (709)
T COG2274 693 ELLAQ 697 (709)
T ss_pred HHHHh
Confidence 88753
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=334.54 Aligned_cols=221 Identities=20% Similarity=0.238 Sum_probs=182.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (513)
..+.++++++.|. .+.+|+|+||.+++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 7 ~~~~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 81 (261)
T PRK14263 7 IVMDCKLDKIFYG-----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81 (261)
T ss_pred ceEEEEeEEEEeC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc
Confidence 4689999998883 3469999999999999999999999999999999999997621 135999999987521
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.++ .+|+.||+.+........ ....+.+.++++.++|.+...... ..+++.|||||+|
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~G~~q 156 (261)
T PRK14263 82 VDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK--GDLGDRVKHALQGAALWDEVKDKL--KVSGLSLSGGQQQ 156 (261)
T ss_pred cchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch--HHHHHHHHHHHHHcCCchhhhhhh--hCCcccCCHHHHH
Confidence 134699999999888 589999998875432211 223456889999999865332222 2356799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe--------CCeE
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS--------NGNT 326 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~--------~G~i 326 (513)
|++|||||+.+|+||||||||+|||+.++..+++.|++++ +++|+|+++|++ .++.++||++++|+ +|++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceE
Confidence 9999999999999999999999999999999999999996 478999988886 57889999999996 8999
Q ss_pred EEEeChHHHH
Q 010314 327 LFFGETLACL 336 (513)
Q Consensus 327 v~~G~~~~~~ 336 (513)
++.|+.+++.
T Consensus 235 ~~~g~~~~~~ 244 (261)
T PRK14263 235 VEMGPTAQIF 244 (261)
T ss_pred EEeCCHHHHH
Confidence 9999988764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=336.86 Aligned_cols=217 Identities=22% Similarity=0.292 Sum_probs=180.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC------EeC
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKS 177 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G------~~~ 177 (513)
..+.++|++++|. .+.+|+|+||.+.+||+++|+|+||||||||+++|+|+.+|+. |+|.++| .+.
T Consensus 9 ~~i~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~---G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 9 DVFNISRLYLYIN-----DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD---SKIKVDGKVLYFGKDI 80 (257)
T ss_pred hheeeeeEEEecC-----CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---CceeEcCEEEECCccc
Confidence 4689999999984 4569999999999999999999999999999999999998864 5555554 433
Q ss_pred CC-----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCC
Q 010314 178 EM-----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGL 248 (513)
Q Consensus 178 ~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~L 248 (513)
.. ....++|++|++.+++.+||+||+.+...........+..+.+.++++.+++.+ ..++ .+..|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~L 154 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNS------PASQL 154 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcC------CcccC
Confidence 21 134689999999999999999999876433211111233456889999999964 3333 45699
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++++ +.|||+++|+. ..+..+||++++|++|+++.
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVE 232 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999965 68999988886 57889999999999999999
Q ss_pred EeChHHHH
Q 010314 329 FGETLACL 336 (513)
Q Consensus 329 ~G~~~~~~ 336 (513)
.|+.++..
T Consensus 233 ~g~~~~~~ 240 (257)
T PRK14246 233 WGSSNEIF 240 (257)
T ss_pred ECCHHHHH
Confidence 99988764
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=331.26 Aligned_cols=222 Identities=20% Similarity=0.273 Sum_probs=180.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (513)
.++++||++.|. .+.+|+|+||++.+||+++|+||||||||||+++|+|+.+ |....+|+|.++|.+...
T Consensus 3 ~l~~~~v~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 588999999884 3469999999999999999999999999999999999864 210125999999987532
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++. |+.||+.+..............+++.++++.++|.+...... +..+..||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~Gq~qr 154 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKL--DKSALGLSGGQQQR 154 (250)
T ss_pred cHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHH--hCCcccCCHHHHHH
Confidence 13469999999988875 999999876432211111223466888999999854322221 23456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
++|||||+.+|+||||||||+|||+.++..+.++|+++++ +.|||+++|+. .++..+||++++|++|++++.|+++++
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 78999988887 578999999999999999999998876
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 233 ~ 233 (250)
T PRK14266 233 F 233 (250)
T ss_pred H
Confidence 4
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=337.41 Aligned_cols=222 Identities=18% Similarity=0.217 Sum_probs=179.9
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC-
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~- 179 (513)
...+.++||++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|++++. ...+|+|.++|.+...
T Consensus 18 ~~~l~~~nl~~~~~-----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 18 HSVFEVEGVKVFYG-----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred CceEEEeeEEEEeC-----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 34799999999984 346999999999999999999999999999999999997531 1125999999986521
Q ss_pred ------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHH
Q 010314 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqr 253 (513)
..+.++|++|++.+++. ||.||+.+........ ...++.+.++++.+++........ ..++..||||||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LSgGq~ 167 (274)
T PRK14265 93 QINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK--GNLDELVEDSLRRAAIWEEVKDKL--KEKGTALSGGQQ 167 (274)
T ss_pred cchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCch--HHHHHHHHHHHHHcccchhhHHHh--cCCcccCCHHHH
Confidence 13469999999988875 9999998764322111 122345677888888743221111 235569999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe---------CC
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NG 324 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~---------~G 324 (513)
|||+|||||+.+|+||||||||+|||+.++..+.++|+++++ +.|||+++|+. ..+.++||++++|+ +|
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G 245 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRG 245 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCc
Confidence 999999999999999999999999999999999999999975 68999988887 57889999999998 89
Q ss_pred eEEEEeChHHHH
Q 010314 325 NTLFFGETLACL 336 (513)
Q Consensus 325 ~iv~~G~~~~~~ 336 (513)
++++.|++.++.
T Consensus 246 ~~~~~g~~~~~~ 257 (274)
T PRK14265 246 KLVEFSPTEQMF 257 (274)
T ss_pred eEEEeCCHHHHH
Confidence 999999998874
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=338.77 Aligned_cols=216 Identities=20% Similarity=0.335 Sum_probs=178.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--Cc
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--YG 182 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--~~ 182 (513)
.++++|+++.|.+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+.... ..
T Consensus 6 ~l~~~~l~~~~~~----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRN----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS---GKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecC----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEhHHhhccc
Confidence 5899999999842 2469999999999999999999999999999999999999875 9999999875321 23
Q ss_pred eEEEEcCCcccC--CCCCHHHHHHHHHHh--cC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 183 SYGFVERETTLI--GSLTVREYLYYSALL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 183 ~~~yv~Q~~~l~--~~lTV~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.++|++|++.+. ...++++++.+.... .. ........+.+.++++.+||.+..++.+ ..|||||||||+
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG~~qrv~ 152 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI------GELSGGQKKRVF 152 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHH
Confidence 599999997652 234788988653211 00 0011123456788999999988877755 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||+++++ +|++++.|+++++
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 99999999999999999999999999999999999987789999988886 5788999999877 8999999988765
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=328.63 Aligned_cols=209 Identities=26% Similarity=0.394 Sum_probs=173.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|.+. .+.+|+|+||++++|++++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~---~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 2 RIEFRNVSFSYPNQ---EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS---GSVLLDGTDIRQLDPAD 75 (220)
T ss_pred eEEEEEEEEEcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CeEEECCEEhHHCCHHH
Confidence 37899999998421 2469999999999999999999999999999999999998875 999999986422
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++ .||.||+.+.. .. .....+.++++.+++.+..++.+.+. ..+..|||||||
T Consensus 76 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~----~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q 147 (220)
T cd03245 76 LRRNIGYVPQDVTLFY-GTLRDNITLGA----PL---ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ 147 (220)
T ss_pred HHhhEEEeCCCCcccc-chHHHHhhcCC----CC---CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence 1246899999998886 69999996531 11 11245678899999988877654211 134699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ +|||+++|+.. .+ ++||++++|++|++++.|
T Consensus 148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999764 89999898874 44 799999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=335.02 Aligned_cols=221 Identities=21% Similarity=0.260 Sum_probs=179.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~-- 179 (513)
..+.++||++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+.++ ....+|+|.++|.+...
T Consensus 9 ~~l~i~~v~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 9 TVLRTENLNVYYG-----SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred eEEEEeeeEEEEC-----CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 3689999999984 24699999999999999999999999999999999999753 10125999999986521
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++ .||.||+.+........ ....+.+.++++.+++.+...... ...+..|||||||
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LSgGq~q 158 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYK--GDMDELVERSLRQAALWDEVKDKL--KQSGLSLSGGQQQ 158 (264)
T ss_pred cChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcc--hHHHHHHHHHHHHhCchhhHHHHh--cCCcccCCHHHHH
Confidence 1346999999998887 49999998765332111 123355677888888853222111 2355699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe---------CCe
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NGN 325 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~---------~G~ 325 (513)
||+|||||+.+|+||||||||+|||+.++..++++|+++++ ++|||+++|+. +++.++||++++|+ +|+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999999975 58999988886 58899999999998 899
Q ss_pred EEEEeChHHHH
Q 010314 326 TLFFGETLACL 336 (513)
Q Consensus 326 iv~~G~~~~~~ 336 (513)
+++.|+++++.
T Consensus 237 i~~~~~~~~~~ 247 (264)
T PRK14243 237 LVEFDRTEKIF 247 (264)
T ss_pred EEEeCCHHHHH
Confidence 99999988874
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=358.71 Aligned_cols=216 Identities=25% Similarity=0.358 Sum_probs=186.0
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC----
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---- 178 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---- 178 (513)
+..+..+||++.|++ ++++++|+|+++++|+.+||+|+||||||||+++|+|+.+|+. |+|.+||.+..
T Consensus 318 ~~ei~~~~l~~~y~~----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~---G~I~vng~~l~~l~~ 390 (559)
T COG4988 318 PIEISLENLSFRYPD----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVNGIDLRDLSP 390 (559)
T ss_pred CceeeecceEEecCC----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCccccccCH
Confidence 456677799999964 3479999999999999999999999999999999999999875 99999997643
Q ss_pred -CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHH
Q 010314 179 -MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGE 252 (513)
Q Consensus 179 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGq 252 (513)
.++++++||+|++.+|+. |++||+.++. + ...++.+.++++..+|.++.+. ++|.+ ...+|||||
T Consensus 391 ~~~~k~i~~v~Q~p~lf~g-TireNi~l~~----~---~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ 461 (559)
T COG4988 391 EAWRKQISWVSQNPYLFAG-TIRENILLAR----P---DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQ 461 (559)
T ss_pred HHHHhHeeeeCCCCccccc-cHHHHhhccC----C---cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHH
Confidence 245789999999999976 9999997642 2 1345678999999999988766 33333 346799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
+|||++||||+.+++|+|+||||++||.++...|++.|.+++++ +|+++++|++ ....-+|+|++|++|++++.|..
T Consensus 462 ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~ 538 (559)
T COG4988 462 AQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTH 538 (559)
T ss_pred HHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCH
Confidence 99999999999999999999999999999999999999999864 8999989986 45667999999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
+++..
T Consensus 539 ~~L~~ 543 (559)
T COG4988 539 EELSE 543 (559)
T ss_pred HHHhh
Confidence 88754
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=334.10 Aligned_cols=198 Identities=23% Similarity=0.320 Sum_probs=170.0
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CceEEEEcCCcccCCCCCH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV 199 (513)
+|+|+||++++|++++|+||||||||||+++|+|+.++ +|+|.++|++.... .+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999864 39999999875321 2358999999888888999
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 010314 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM-------RPHVLFID 272 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~-------~P~iLllD 272 (513)
.||+.+...... ...+..+.++++++.++|.+..++.+ ..|||||||||+|||||+. +|++||||
T Consensus 87 ~~nl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 87 FQYLTLHQPDKT--RTEAVASALNEVAEALGLDDKLGRSV------NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHHhcCccCC--CcHHHHHHHHHHHHHcCCHhHhcCCc------ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999977532111 11223456889999999987777654 4999999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|||+|||+.++..+.++|++++++|.|||+++|+. .++..+||++++|++|++++.|+.+++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999987789999988886 478899999999999999999987765
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=329.53 Aligned_cols=214 Identities=24% Similarity=0.343 Sum_probs=175.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|.+ .+.+++|+||++++|++++|+||||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYDE----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecCC----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEeHHHcCHHH
Confidence 4789999999842 2359999999999999999999999999999999999999875 999999976432
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++. ||.||+.+... . .....+.++++.+++.+..++...+ ...+..|||||||
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~----~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~ 146 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRP----N---ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ 146 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCC----C---CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence 13468999999988875 99999976421 1 1123455667777776655543210 1245799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||+|+.+|++|||||||+|||+.++..+++.|+++. +|+|||+++|++. ++. .||++++|++|++++.|+.++
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TIK-NADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999986 5899999999874 554 599999999999999988766
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
..
T Consensus 224 ~~ 225 (229)
T cd03254 224 LL 225 (229)
T ss_pred HH
Confidence 54
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=367.03 Aligned_cols=222 Identities=23% Similarity=0.305 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---CC-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAK---SE- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~-G~~---~~- 178 (513)
..++++||++.|.+.....+.+|+|+||.+++||+++|+||||||||||+++|+|+++|+. |+|.++ |.+ ..
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS---GEVNVRVGDEWVDMTK 354 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEecCCccccccc
Confidence 3699999999985211122469999999999999999999999999999999999998874 999996 532 11
Q ss_pred -------CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-----HHhhhhcCCCCCC
Q 010314 179 -------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-----YANKLIGGHCYMK 246 (513)
Q Consensus 179 -------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----~~~~~vg~~~~~~ 246 (513)
...+.++|++|++.+++.+||.||+.+...+..+. ...++++.++++.++|.+ ..++. +.
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~------~~ 426 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPD--ELARMKAVITLKMVGFDEEKAEEILDKY------PD 426 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCCCCCccchhhhhCC------hh
Confidence 01245899999998999999999998754322211 223456889999999964 45554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||+++|+. ..+.++||++++|++|+
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGK 505 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999765 89999988886 57889999999999999
Q ss_pred EEEEeChHHHHH
Q 010314 326 TLFFGETLACLQ 337 (513)
Q Consensus 326 iv~~G~~~~~~~ 337 (513)
+++.|+++++..
T Consensus 506 i~~~g~~~~~~~ 517 (520)
T TIGR03269 506 IVKIGDPEEIVE 517 (520)
T ss_pred EEEECCHHHHHh
Confidence 999998877643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=366.17 Aligned_cols=216 Identities=20% Similarity=0.357 Sum_probs=182.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++||++.|. .+.+|+||||++++|++++|+||||||||||+++|+|+++|+ ..+|+|.++|++....
T Consensus 2 l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFG-----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeC-----CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 68999999984 346999999999999999999999999999999999998862 0249999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCChhHH-hhhhcCCCCCCCCCHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~-~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+||.||+.+....... ....+..++++++++.++|.+.. ++.+ .+||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~~qr 149 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV------GDYGGGQQQL 149 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch------hhCCHHHHHH
Confidence 24699999999999999999999876432211 11123345688999999997654 3434 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|+. .++..+||+|++|++|+++..|++.+
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 9999999999999999999999999999999999999988899999988876 57889999999999999999988754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=321.56 Aligned_cols=197 Identities=22% Similarity=0.286 Sum_probs=169.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|++++|. .+.+|+|+||.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACERD-----ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEEC-----CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccchHHhh
Confidence 68899999984 3469999999999999999999999999999999999999875 999999987532 13
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||.||+.+...... . ...+.++++++.+||.+..++.+ ..||||||||++||||
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-~---~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrl~la~a 143 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHG-P---GDDEALWEALAQVGLAGFEDVPV------RQLSAGQQRRVALARL 143 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcC-c---cHHHHHHHHHHHcCCHHHhhCCh------hhcCHHHHHHHHHHHH
Confidence 468999999999999999999987653321 1 23456889999999988777754 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|+. ..+....+|++++
T Consensus 144 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 144 WLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh-hhhccCCceEEec
Confidence 9999999999999999999999999999999987789999999987 4676767777766
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=332.67 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=179.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE--- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~--- 178 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYG-----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 4689999999984 3469999999999999999999999999999999999987521 13699999986532
Q ss_pred ------CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCC
Q 010314 179 ------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGL 248 (513)
Q Consensus 179 ------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~L 248 (513)
...+.++|++|++.+++. ||+||+.+.............++.+.++++.+++.+ ..++ .+..|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGD------LAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhC------CcccC
Confidence 113468999999999986 999999876432211111122456788888888742 3333 44599
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|+. +++.++||++++|++|+++.
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 68999988876 57889999999999999999
Q ss_pred EeChHHHH
Q 010314 329 FGETLACL 336 (513)
Q Consensus 329 ~G~~~~~~ 336 (513)
.|+.+++.
T Consensus 241 ~g~~~~~~ 248 (265)
T PRK14252 241 FGATDTIF 248 (265)
T ss_pred eCCHHHHH
Confidence 99987754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=372.55 Aligned_cols=215 Identities=23% Similarity=0.336 Sum_probs=182.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.+.+ ++.+|+|+|+++++|+.+||+||||||||||+++|+|++ |. +|+|.+||.+...
T Consensus 348 ~~i~~~~vsf~~~~----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 348 VTIEAEDLEILSPD----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPE 419 (588)
T ss_pred ceEEEEeeEEeccC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHH
Confidence 35999999986642 356999999999999999999999999999999999999 75 4999999987543
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|.. |++|||.++. +. ..++++.++++..++.++..+++.|.+. ...||||||
T Consensus 420 ~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~~---~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 420 SWRKHLSWVGQNPQLPHG-TLRDNVLLGN----PD---ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred HHHhheEEecCCCcCCCc-CHHHHhhcCC----CC---CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 13579999999999965 9999997641 21 2346788899999998877666554443 356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.++..|.+.|+++. +++|+|+++|++. ....||+|++|++|++++.|+.+
T Consensus 492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~ 568 (588)
T PRK11174 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYA 568 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHH
Confidence 99999999999999999999999999999999999999885 5789999999973 45679999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 569 eL~~ 572 (588)
T PRK11174 569 ELSQ 572 (588)
T ss_pred HHHh
Confidence 7754
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=366.05 Aligned_cols=213 Identities=17% Similarity=0.295 Sum_probs=181.1
Q ss_pred EEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------C
Q 010314 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP------Y 181 (513)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~------~ 181 (513)
++|+++.|. ++.+|+|+||.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++.... .
T Consensus 1 ~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 1 MSNISKSFP-----GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS---GSILFQGKEIDFKSSKEALE 72 (491)
T ss_pred CCceEEEeC-----CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCEECCCCCHHHHHh
Confidence 368888884 3469999999999999999999999999999999999999875 9999999875321 2
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCC--CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLP--GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
+.++|++|++.+++.+||+||+.+....... ....+..++++++++.+++.+..++.+ .+|||||||||+||
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lA 146 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV------ATLSVSQMQMIEIA 146 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch------hhCCHHHHHHHHHH
Confidence 4699999999899999999999875321101 111223456889999999987776654 49999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|||+.+|+||||||||+|||+.++..+++.|+++++.|.|||+++|+. +++..+||++++|++|+++..|++++.
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 999999999999999999999999999999999987899999988876 578899999999999999999987654
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=319.24 Aligned_cols=188 Identities=46% Similarity=0.734 Sum_probs=163.0
Q ss_pred ceEEEEeEEEEEeccc-cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC-
Q 010314 104 ASVVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~- 179 (513)
..++++|+++.|.+.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|++ +|.. |+|.++|++...
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~---G~i~~~g~~~~~~ 78 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS---GEVLINGRPLDKR 78 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc---eEEEECCEeCchH
Confidence 3589999999995310 01246999999999999999999999999999999999999 8764 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+|++||+.+...+ ..|||||||||+|
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------------------------~~LS~G~~qrv~l 122 (194)
T cd03213 79 SFRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------------------RGLSGGERKRVSI 122 (194)
T ss_pred hhhheEEEccCcccCCCCCcHHHHHHHHHHh------------------------------------ccCCHHHHHHHHH
Confidence 235699999999999999999999653210 0699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.++||++++|++|++++.|
T Consensus 123 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 123 ALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998779999999998754688899999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=327.45 Aligned_cols=207 Identities=19% Similarity=0.319 Sum_probs=172.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++||++.|. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 6 ~~i~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~ 77 (225)
T PRK10247 6 PLLQLQNVGYLAG-----DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDISTLKPE 77 (225)
T ss_pred ceEEEeccEEeeC-----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEcCcCCHH
Confidence 3689999999984 3469999999999999999999999999999999999998875 999999986532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++. ||+||+.+....... ....+.++++++.+++. ...++. +..|||||||||+
T Consensus 78 ~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~~qrv~ 147 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQ---QPDPAIFLDDLERFALPDTILTKN------IAELSGGEKQRIS 147 (225)
T ss_pred HHHhccEEEecccccccc-cHHHHHHhHHhhcCC---ChHHHHHHHHHHHcCCChHHhcCC------cccCCHHHHHHHH
Confidence 12468999999988874 999999875433211 11234578899999995 456654 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEe-CCeEEEEe
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFG 330 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~G 330 (513)
|||||+.+|+||||||||+|||+.++..+.++|+++.++ |.|||+++|+.. .+ ..||++++|+ ++..+..|
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEA 220 (225)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhh
Confidence 999999999999999999999999999999999999764 899999888874 56 4699999994 55555444
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=365.25 Aligned_cols=224 Identities=22% Similarity=0.262 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCCC--
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~~-- 180 (513)
.++++|+++.|.+.. ..+.+|+|+||++.+||++||+||||||||||+++|+|+++|. ...+|+|.++|.++...
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQQ-TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCCC-CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 589999999995211 1246999999999999999999999999999999999999862 01259999999874211
Q ss_pred -------CceEEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh---HHhhhhcCCCCCCCC
Q 010314 181 -------YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLIGGHCYMKGL 248 (513)
Q Consensus 181 -------~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---~~~~~vg~~~~~~~L 248 (513)
.+.++|++|++. +++.+||.+++.+...........+..++++++++.+||.+ ..++. +.+|
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------~~~L 157 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDY------PHQL 157 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhC------Cccc
Confidence 136999999974 67778999998765322111111234567899999999975 34554 4599
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||+++|+. ..+..+||+|++|++|+++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 89999988886 5788899999999999999
Q ss_pred EEeChHHHH
Q 010314 328 FFGETLACL 336 (513)
Q Consensus 328 ~~G~~~~~~ 336 (513)
+.|++.+++
T Consensus 237 ~~g~~~~~~ 245 (529)
T PRK15134 237 EQNRAATLF 245 (529)
T ss_pred EeCCHHHHh
Confidence 999987764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=333.25 Aligned_cols=216 Identities=23% Similarity=0.336 Sum_probs=173.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|.+. .++.+|+|+||++++|++++|+|+||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 1 l~i~~l~~~~~~~--~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPSR--PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS---GEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCCC--CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCC---CEEEECCEehhhcCHHHH
Confidence 4689999988531 12469999999999999999999999999999999999998875 9999999864311
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++ .||+||+.+.... .. ...+.+.++..++.++.+.+..+ ...++.||||||||
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~---~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 147 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPD---AT----DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR 147 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCC---CC----HHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence 245999999998886 6999999764211 11 12234555656665544433210 23467999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||+|+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|+.. ++. .||++++|++|++++.|+.+++
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999997 7899999998874 565 8999999999999999987766
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 225 ~~ 226 (238)
T cd03249 225 MA 226 (238)
T ss_pred hh
Confidence 44
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=366.40 Aligned_cols=222 Identities=23% Similarity=0.294 Sum_probs=184.9
Q ss_pred ceEEEEeEEEEEecccc------ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010314 104 ASVVWKDLTVTIKGKRR------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (513)
..++++|+++.|..... ..+.+|+|+||++++||+++|+||||||||||+|+|+|+++ . +|+|+++|+++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEc
Confidence 35899999999952110 13569999999999999999999999999999999999985 4 49999999764
Q ss_pred CC--------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCC
Q 010314 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYM 245 (513)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~ 245 (513)
.. ..+.++|++|++ .+++.+||.||+.++...... ....+.++++.++++.++|. +..++. +
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~ 423 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY------P 423 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC------C
Confidence 21 124589999996 588889999999886533211 11123346688999999997 466664 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
..|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|+. ..+..+||++++|++|
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQG 502 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECC
Confidence 599999999999999999999999999999999999999999999999865 89999988876 5788999999999999
Q ss_pred eEEEEeChHHHH
Q 010314 325 NTLFFGETLACL 336 (513)
Q Consensus 325 ~iv~~G~~~~~~ 336 (513)
++++.|++++++
T Consensus 503 ~i~~~~~~~~~~ 514 (529)
T PRK15134 503 EVVEQGDCERVF 514 (529)
T ss_pred EEEEEcCHHHHh
Confidence 999999987764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=364.59 Aligned_cols=213 Identities=21% Similarity=0.326 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTFP-----GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA---GSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEEC-----CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC-C-CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQL-P-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~-~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++.+++.+||.||+.++..... . ....+..+++.++++.++|.+..++.+ .+|||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv 149 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL------KYLSIGQRQMV 149 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch------hhCCHHHHHHH
Confidence 12469999999999999999999987532111 1 011233457889999999986666644 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|++ .++..+||++++|++|+++..++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999999999987899999988886 578899999999999999877653
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=328.78 Aligned_cols=202 Identities=24% Similarity=0.270 Sum_probs=169.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
+.++++++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 23 l~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~------ 88 (224)
T cd03220 23 LGILGRKGEVG-----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSL------ 88 (224)
T ss_pred hhhhhhhhhcC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEchh------
Confidence 67788888773 4579999999999999999999999999999999999999875 999999986421
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
..+...+++.+||+||+.+....... .....++.+.++++.++|.+..++.++ +|||||||||+|||+|+.+
T Consensus 89 -~~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 89 -LGLGGGFNPELTGRENIYLNGRLLGL-SRKEIDEKIDEIIEFSELGDFIDLPVK------TYSSGMKARLAFAIATALE 160 (224)
T ss_pred -hcccccCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCChh------hCCHHHHHHHHHHHHHhcC
Confidence 11223456789999999876543211 112334567889999999888777554 9999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++..+||++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999987789999988886 5788899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=318.55 Aligned_cols=187 Identities=41% Similarity=0.667 Sum_probs=161.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCC-CC
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSE-MP 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~-~~ 180 (513)
..++++|+++.|.+.. ..+.+|+++||++++|++++|+||||||||||+++|+|+.+ ++ +|+|.++|++.. ..
T Consensus 2 ~~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~~~~ 77 (192)
T cd03232 2 SVLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLDKNF 77 (192)
T ss_pred cEEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehHHHh
Confidence 3689999999995311 12469999999999999999999999999999999999863 44 599999998753 22
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+++.+||+||+.+...+ + .|||||||||+|||
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----------------~-------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALL-----------------R-------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHH-----------------h-------------------cCCHHHhHHHHHHH
Confidence 35689999999999999999999763210 0 69999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC-CeEEEEe
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFFG 330 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv~~G 330 (513)
||+.+|++|||||||+|||+.++..+++.|+++++.|+|||+++|++..++...||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877899999999874357889999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=322.89 Aligned_cols=201 Identities=20% Similarity=0.281 Sum_probs=174.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CC
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PY 181 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~ 181 (513)
..+.++|+++.|. .+.+++++||.+++||+++|+|+||||||||+++|+|+++|+. |+|.++|++... ..
T Consensus 10 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRN-----EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES---GQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEecC-----CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---eeEEECCEEccchhhh
Confidence 4689999999884 3469999999999999999999999999999999999999875 999999987532 12
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+|+.||+.+...... . ...+.+.++++.++|.+..++.+ ..|||||||||+|||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~lara 151 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHG--R--RAKQMPGSALAIVGLAGYEDTLV------RQLSAGQKKRLALARL 151 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcC--C--cHHHHHHHHHHHcCChhhccCCh------hhCCHHHHHHHHHHHH
Confidence 458999999999999999999987643321 1 12345778899999988777754 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
|+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|+. .++.++||++++|+.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 152 WLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 9999999999999999999999999999999988889999988887 588999999999864
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=330.95 Aligned_cols=215 Identities=26% Similarity=0.344 Sum_probs=170.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++|+++.|.++ .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPGD---GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS---GRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCCC---CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCC---CEEEECCEEhhhCCHHHH
Confidence 4689999998532 1369999999999999999999999999999999999999875 999999986432 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhc-----CCCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG-----GHCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg-----~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++ .||+||+.+.... . ....+.+.++..++.+..+.... -+..+..||||||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~---~----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPG---A----TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCC---C----CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 246899999998886 6999999764211 0 01123333444444333322110 012456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||+++|+.. ++.. ||++++|++|+++..|+++++
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHHH
Confidence 9999999999999999999999999999999999999964 889999999874 5655 999999999999999988776
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 224 ~~ 225 (234)
T cd03251 224 LA 225 (234)
T ss_pred HH
Confidence 44
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=304.92 Aligned_cols=215 Identities=26% Similarity=0.319 Sum_probs=186.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
+.+.++|+++.| +..++|.|+++..+.||.+.++||||+|||||++.|.=+.-|.+ |+..+.|.....
T Consensus 1 msirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~s---g~l~ia~~~fd~s~~~ 72 (242)
T COG4161 1 MSIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTP 72 (242)
T ss_pred CceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCC---CeEEecccccccccCc
Confidence 357899999988 45679999999999999999999999999999999998877764 999998753211
Q ss_pred -------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH
Q 010314 180 -------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq 252 (513)
.++.+|+|+|...++|++||.|||..+...-+.....+.+.+..++|+.+.|.+++|+ +|-.|||||
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr------~plhlsggq 146 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADR------YPLHLSGGQ 146 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccccc------Cceecccch
Confidence 1346899999999999999999997664322222224566778899999999999988 566999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
+|||+|||||+.+|++|++||||++|||+-..++.+.|++|+..|.|-++++|.. +.+...+.+|+.|.+|+||+.|+.
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecch
Confidence 9999999999999999999999999999999999999999999999988888886 577889999999999999999986
Q ss_pred H
Q 010314 333 L 333 (513)
Q Consensus 333 ~ 333 (513)
+
T Consensus 226 ~ 226 (242)
T COG4161 226 S 226 (242)
T ss_pred h
Confidence 5
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=329.45 Aligned_cols=215 Identities=23% Similarity=0.245 Sum_probs=182.0
Q ss_pred ceEEEEeEEEEEeccc---------------cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee
Q 010314 104 ASVVWKDLTVTIKGKR---------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~---------------~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G 168 (513)
+.+.++||+++|...+ ...+.+|+++||++++|++++|+||||||||||+++|+|+++|+. |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~---G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV---G 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---e
Confidence 4789999999986421 123469999999999999999999999999999999999999875 9
Q ss_pred EEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCC
Q 010314 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (513)
Q Consensus 169 ~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~L 248 (513)
+|.++|. ++++.|+..+.+.+|+.||+.+....... ...+....++++++.++|.+..++.+ ..|
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~L 144 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCMGF-KRKEIKAMTPKIIEFSELGEFIYQPV------KKY 144 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCCc------ccC
Confidence 9999985 35677777778889999999775433211 11233445678889999988777654 499
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||||+||+||+.+|+||||||||+|||+.++..+++.|.++++.|+|||+++|+. .++..+||++++|++|+++.
T Consensus 145 S~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999987799999988886 57889999999999999999
Q ss_pred EeChHHHHH
Q 010314 329 FGETLACLQ 337 (513)
Q Consensus 329 ~G~~~~~~~ 337 (513)
.|+.+++..
T Consensus 224 ~g~~~~~~~ 232 (264)
T PRK13546 224 YGELDDVLP 232 (264)
T ss_pred eCCHHHHHH
Confidence 999887654
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=376.15 Aligned_cols=214 Identities=25% Similarity=0.326 Sum_probs=183.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++++|++. .+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 450 ~~I~~~nvsf~Y~~~---~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~ 523 (686)
T TIGR03797 450 GAIEVDRVTFRYRPD---GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES---GSVFYDGQDLAGLDVQ 523 (686)
T ss_pred ceEEEEEEEEEcCCC---CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcCcCCHH
Confidence 369999999999532 3569999999999999999999999999999999999999975 999999988643
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|+. |++|||.++. + ..++.+.++++..++.+..+.++.|.+. ...||||||
T Consensus 524 ~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 524 AVRRQLGVVLQNGRLMSG-SIFENIAGGA----P----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred HHHhccEEEccCCccCcc-cHHHHHhcCC----C----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 23579999999999965 9999997631 1 1245688999999999877666544332 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+.+++++.|+++ ++|+|+++|++. ....||+|++|++|++++.|+.+
T Consensus 595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~ 669 (686)
T TIGR03797 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYD 669 (686)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999886 579999999873 45679999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 670 ~Ll~ 673 (686)
T TIGR03797 670 ELMA 673 (686)
T ss_pred HHHh
Confidence 8654
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=330.26 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=173.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++||++.|. .+.+|+++||++++||+++|+||||||||||+++|+|+++|++ |+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSFG-----QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE---GVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEEC-----CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCc------cCE
Confidence 589999999984 3469999999999999999999999999999999999999875 99999873 359
Q ss_pred EEEcCCcccCCCC--CHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 185 GFVERETTLIGSL--TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 185 ~yv~Q~~~l~~~l--TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
+|++|++.+++.+ |+.+++.+. +. ...+.+.++++.++|.+..++.+ ..|||||||||+|||||
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-----~~---~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrv~laral 135 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-----PG---TKKEDILPALKRVQAGHLIDAPM------QKLSGGETQRVLLARAL 135 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-----cc---ccHHHHHHHHHHcCChHHHhCCh------hhCCHHHHHHHHHHHHH
Confidence 9999998877753 777776431 11 12345788999999998887754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+. +++..+||++++|+ |+++..|+++++.
T Consensus 136 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 136 LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 9999999999999999999999999999999865 89999988886 57889999999996 4799999887753
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=363.92 Aligned_cols=218 Identities=22% Similarity=0.255 Sum_probs=182.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEEC----------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVN---------- 173 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~~~~G~I~i~---------- 173 (513)
++++|+++.|. .+.+|+|+||.+.+|++++|+||||||||||+++|+|++ +|+ +|+|.++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKFD-----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEEC-----CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEecccccccccc
Confidence 46899999984 346999999999999999999999999999999999997 565 4999997
Q ss_pred -------------CEeC--------C-------CCCceEEEEcCC-cccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHH
Q 010314 174 -------------GAKS--------E-------MPYGSYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED 224 (513)
Q Consensus 174 -------------G~~~--------~-------~~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~ 224 (513)
|.++ . ..++.++|++|+ +.+++.+||.||+.+....... ...+..+++.+
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~ 151 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGY-EGKEAVGRAVD 151 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 2111 0 012458999997 6788889999999886543211 11234567899
Q ss_pred HHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEE
Q 010314 225 AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFT 303 (513)
Q Consensus 225 ~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t 303 (513)
+++.+||.+..++.+ .+|||||||||+|||||+.+|+||||||||+|||+.++..++++|+++++ .|+|||++
T Consensus 152 ~l~~~gl~~~~~~~~------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 152 LIEMVQLSHRITHIA------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT 225 (520)
T ss_pred HHHHcCChhhhhcCc------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 999999988877754 49999999999999999999999999999999999999999999999975 48999998
Q ss_pred EeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 304 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 304 ~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
+|+. ..+.++||++++|++|++++.|++++....+
T Consensus 226 tHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 226 SHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred eCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 8886 5788899999999999999999988776543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=320.85 Aligned_cols=194 Identities=24% Similarity=0.320 Sum_probs=168.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++||++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 1 l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCERD-----GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEeC-----CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccccHHhh
Confidence 46899999984 3469999999999999999999999999999999999999875 999999977432 12
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||+||+.+... . ...++++++++.++|.+..++.+ ..||||||||++||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~----~---~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~lara 139 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHA----D---HSDEQVEEALARVGLNGFEDRPV------AQLSAGQQRRVALARL 139 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhcc----c---ccHHHHHHHHHHcCChhhhcCch------hhCCHHHHHHHHHHHH
Confidence 469999999999989999999976421 1 12356789999999988777654 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
|+.+|++|||||||+|||+.++..+++.|+++.++|.|+|+++|++. +....|++++++
T Consensus 140 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999999999999877899999999885 677899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=373.86 Aligned_cols=219 Identities=26% Similarity=0.398 Sum_probs=184.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...++|+|+.|+|+.+ .+..+|+|+||.|++|+.+||+|||||||||++++|.+++.|+. |+|+++|.++..
T Consensus 348 ~g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~---G~V~idG~di~~~~~ 422 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSR--PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS---GEVLIDGEDIRNLNL 422 (1228)
T ss_pred ccceEEEEEEecCCCC--CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---ceEEEcCccchhcch
Confidence 3579999999999864 45689999999999999999999999999999999999999985 999999987543
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGE 252 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGq 252 (513)
.+..+|.|.|+|.|| ..|++||+.|+ .+. ..++.+.++.+..+..++..+++.|.+ ...+|||||
T Consensus 423 ~~lr~~iglV~QePvlF-~~tI~eNI~~G----~~d---at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQ 494 (1228)
T KOG0055|consen 423 KWLRSQIGLVSQEPVLF-ATTIRENIRYG----KPD---ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQ 494 (1228)
T ss_pred HHHHhhcCeeeechhhh-cccHHHHHhcC----CCc---ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHH
Confidence 235799999999888 56999999774 221 334567777777777666655544332 223599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||++|||||+.+|+|||||||||+||+.+...|.+.|.++. .|+|.|+++|..+ .+.. +|+|++|++|++|+.|+.
T Consensus 495 KQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 495 KQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999876 5778888789874 5655 999999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
+|++.
T Consensus 572 ~ELi~ 576 (1228)
T KOG0055|consen 572 DELIA 576 (1228)
T ss_pred HHHHh
Confidence 99875
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=335.09 Aligned_cols=214 Identities=20% Similarity=0.294 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|... ...+|+|+||.|++||+++|+|+||||||||+++|+|+++ . +|+|+++|.++..
T Consensus 2 ~i~~~nls~~~~~~---~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTEG---GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCCC---CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHH
Confidence 47899999999532 2459999999999999999999999999999999999987 4 3999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqrq 254 (513)
.++.++|++|++.+|+. ||++|+.... . ...+.+.++++.+||.+..++++++.. ....|||||||
T Consensus 75 lr~~i~~v~q~~~lf~~-tv~~nl~~~~----~----~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q 145 (275)
T cd03289 75 WRKAFGVIPQKVFIFSG-TFRKNLDPYG----K----WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ 145 (275)
T ss_pred HhhhEEEECCCcccchh-hHHHHhhhcc----C----CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 13469999999999975 9999995321 1 122457788999999988887664211 12349999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|++|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|+. ..+. .||+|++|++|+++++|++++
T Consensus 146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~ 222 (275)
T cd03289 146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQK 222 (275)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHH
Confidence 9999999999999999999999999999999999999875 489999988887 4565 599999999999999999998
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 223 l~~ 225 (275)
T cd03289 223 LLN 225 (275)
T ss_pred Hhh
Confidence 764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=326.21 Aligned_cols=213 Identities=24% Similarity=0.342 Sum_probs=172.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++|+++.|.+ .+.+|+|+|+.+++|++++|+||||||||||+++|+|+.+|.. |+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDP----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS---GSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEhhhCCHHHH
Confidence 468999998842 2459999999999999999999999999999999999998875 999999986432 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++ .||.||+.+... . . ....+.+.++.+++.+..+....+ ...++.||||||||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~-~--~----~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r 145 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRP-D--A----TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCC-C--C----CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 246899999998886 699999976421 1 1 112244556666665544433111 12456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|++|||||||+|||+.++..+++.|+++++ |.|||+++|+.. .+. .||++++|++|++++.|+.++.
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999999977 899999888874 564 4999999999999999887765
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 223 ~ 223 (236)
T cd03253 223 L 223 (236)
T ss_pred h
Confidence 4
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=352.60 Aligned_cols=214 Identities=22% Similarity=0.386 Sum_probs=187.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|++++|. ..++|++|||++++||++||+|.||||||||+|+|+|.++|++ |+|+++|++....
T Consensus 7 ~ll~~~~i~K~Fg-----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~---G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSFG-----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEcC-----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCC---ceEEECCEEccCCCHH
Confidence 4689999999994 5689999999999999999999999999999999999999985 9999999875421
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCC-C--chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLP-G--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~--~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
...|+.|+|+..|+|++||.||++++.....+ . +.....++..++|+.+++....++.++ .||+||||
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~------~LsiaqrQ 152 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG------DLSIAQRQ 152 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh------hCCHHHHH
Confidence 24699999999999999999999876543321 1 113445678899999999633677665 99999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
.|+|||||..+++|||||||||.|+......+++.+++|+++|.+||+++|.. ++++++||||.||++|+++..++.
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999999999999999999988865 799999999999999999998873
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=334.87 Aligned_cols=223 Identities=23% Similarity=0.308 Sum_probs=179.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (513)
..+.++||++.|. .+.+|+++||++.+||+++|+|+||||||||+++|+|++++. ...+|+|.++|.+...
T Consensus 44 ~~l~i~nl~~~~~-----~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 44 AKLSVEDLDVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred ceEEEEEEEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3689999999984 346999999999999999999999999999999999998521 0125999999986531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC------------CCchhhHHHHHHHHHHHcCChhHHhhhhcCC
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQL------------PGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~------------~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~ 242 (513)
..+.++|++|++.+++ .||+||+.+...... .......++.+.++++.+++.+...... +
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~ 195 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL--D 195 (305)
T ss_pred ccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh--c
Confidence 1246999999998887 499999987643210 0001122456788999998853222221 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEE-EEE
Q 010314 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI-CLL 321 (513)
Q Consensus 243 ~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v-~vL 321 (513)
.++++|||||||||+|||||+.+|+||||||||+|||+.++..++++|+++++ +.|||+++|+. ..+..+||++ ++|
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~i~~~~d~i~~~l 273 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM-QQAARISDQTAVFL 273 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhcCEEEEEe
Confidence 35679999999999999999999999999999999999999999999999976 48999988887 5788999997 578
Q ss_pred eCCeEEEEeChHHHH
Q 010314 322 SNGNTLFFGETLACL 336 (513)
Q Consensus 322 ~~G~iv~~G~~~~~~ 336 (513)
++|++++.|+++++.
T Consensus 274 ~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 274 TGGELVEYDDTDKIF 288 (305)
T ss_pred cCCEEEEeCCHHHHH
Confidence 999999999987654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=369.24 Aligned_cols=218 Identities=22% Similarity=0.294 Sum_probs=185.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|++. .+.+|+|+|+++++||.+||+|+||||||||+++|+|+++|+. |+|.+||.+...
T Consensus 340 ~~i~~~~vsf~y~~~---~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 340 GDIEFRNVTFTYPGK---EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE---GEILLDGHDLRDYTLA 413 (582)
T ss_pred CeEEEEEEEEecCCC---CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCC---ceEEECCEEhhhcCHH
Confidence 369999999999532 3469999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++|++|++.+|+ .|++|||.++. +. ...+++++++++.+++.+..++++.|.+. ...||||||
T Consensus 414 ~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~--~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr 486 (582)
T PRK11176 414 SLRNQVALVSQNVHLFN-DTIANNIAYAR----TE--QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR 486 (582)
T ss_pred HHHhhceEEccCceeec-chHHHHHhcCC----CC--CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence 2357999999999996 59999996531 11 12356788899999998876665544332 356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+++|+|||||||||+||+.++..+++.|+++. +++|+|+++|++ ...+.||+|++|++|++++.|+.+
T Consensus 487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999985 478999999987 356779999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 564 ~l~~ 567 (582)
T PRK11176 564 ELLA 567 (582)
T ss_pred HHHh
Confidence 7754
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=368.32 Aligned_cols=215 Identities=20% Similarity=0.288 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|++ .+.+|+|+|+++++||.+||+|+||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 339 ~~i~~~~v~f~y~~----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~ 411 (592)
T PRK10790 339 GRIDIDNVSFAYRD----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE---GEIRLDGRPLSSLSHS 411 (592)
T ss_pred CeEEEEEEEEEeCC----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEhhhCCHH
Confidence 35999999999953 2469999999999999999999999999999999999999975 999999987542
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++|++|++.+|+. |++|||.++. + ..++++.++++.+|+.+..++++.|.+. ...||||||
T Consensus 412 ~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~----~----~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLAD-TFLANVTLGR----D----ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred HHHhheEEEccCCccccc-hHHHHHHhCC----C----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 23679999999999976 9999997742 1 2345688999999999887776654443 356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ ++|+|+++|++. ....||+|++|++|++++.|+.+
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999864 689999999973 45679999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++.+
T Consensus 560 ~L~~ 563 (592)
T PRK10790 560 QLLA 563 (592)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=325.10 Aligned_cols=216 Identities=20% Similarity=0.246 Sum_probs=174.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~---- 179 (513)
++++||++.|. .+.+|+|+||.+++|++++|+|+||||||||+++|+|+. +|+ +|+|.++|.+...
T Consensus 2 i~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHH
Confidence 68999999984 346999999999999999999999999999999999995 465 4999999976421
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHH-hc-C-CC---chhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-LQ-L-PG---FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-~~-~-~~---~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSG 250 (513)
....++|++|++.+++.+|+.+++.+... +. . .. ......+.++++++.+++. +..++.+. +.|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS~ 148 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN-----VGFSG 148 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC-----CCCCH
Confidence 11358999999988888887776543211 11 0 00 0012245678889999995 44444321 37999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc-CCEEEEEeCCeEEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFF 329 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~ 329 (513)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++.|+|||+++|++. .+... ||++++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999877899999888864 66666 899999999999999
Q ss_pred eChHHH
Q 010314 330 GETLAC 335 (513)
Q Consensus 330 G~~~~~ 335 (513)
|+.+.+
T Consensus 228 g~~~~~ 233 (248)
T PRK09580 228 GDFTLV 233 (248)
T ss_pred CCHHHH
Confidence 988754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=397.18 Aligned_cols=223 Identities=22% Similarity=0.307 Sum_probs=196.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++||++.|.+ ..+.+|+||||.|++||++||+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts---G~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS---GDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEECCEECcchHHH
Confidence 46999999999952 12569999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.++.+||++|++.+++.+||+|+|.+.+.++... ..+.++.++++++.++|.+++++.++ .|||||||||+||
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~-~~~~~~~v~~lLe~lgL~~~~dk~~~------~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP-AEEIEKVANWSIQSLGLSLYADRLAG------TYSGGNKRKLSTA 2082 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCHHHhcCChh------hCCHHHHHHHHHH
Confidence 2356999999999999999999998866554211 12345668899999999998888665 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+++|+. +++..+||||++|++|+++..|+++++...|
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 999999999999999999999999999999999987899999988876 6899999999999999999999999987766
Q ss_pred H
Q 010314 340 S 340 (513)
Q Consensus 340 ~ 340 (513)
.
T Consensus 2162 g 2162 (2272)
T TIGR01257 2162 G 2162 (2272)
T ss_pred C
Confidence 4
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=363.68 Aligned_cols=220 Identities=18% Similarity=0.261 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~-~~~~~~G~I~i~G~~~~~~-- 180 (513)
..++++||++.|... .++.+|+|+||++++||+++|+||||||||||+|+|+|+++ |++ |+|.++|++....
T Consensus 258 ~~l~~~~l~~~~~~~--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~---G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 258 VILEVRNLTAWDPVN--PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE---GEIFIDGKPVKIRNP 332 (506)
T ss_pred ceEEEecCccccccc--cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---cEEEECCEECCCCCH
Confidence 368999999988421 12469999999999999999999999999999999999988 454 9999999875321
Q ss_pred ----CceEEEEcCCc---ccCCCCCHHHHHHHHHHhcCC----CchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCC
Q 010314 181 ----YGSYGFVERET---TLIGSLTVREYLYYSALLQLP----GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (513)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~L 248 (513)
...++|++|++ .+++.+||.||+.+....... .......+.++++++.++|. +..++.+ ..|
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~L 406 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI------ARL 406 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc------ccC
Confidence 23589999985 478889999999875321110 01122345688999999996 4666654 499
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. .++.++||++++|++|+++.
T Consensus 407 SgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKG 485 (506)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999988886 58899999999999999999
Q ss_pred EeChHHH
Q 010314 329 FGETLAC 335 (513)
Q Consensus 329 ~G~~~~~ 335 (513)
.|+++++
T Consensus 486 ~~~~~~~ 492 (506)
T PRK13549 486 DLINHNL 492 (506)
T ss_pred EeccccC
Confidence 9877653
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=322.22 Aligned_cols=206 Identities=19% Similarity=0.245 Sum_probs=169.1
Q ss_pred EEEEeEEEEEeccccc--cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--eCCC
Q 010314 106 VVWKDLTVTIKGKRRY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN--GA--KSEM 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~--G~--~~~~ 179 (513)
++++||++.|...+.. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++ |. +...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS---GRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEEecCCCccchhh
Confidence 6899999999532111 2469999999999999999999999999999999999999875 999998 42 2211
Q ss_pred ---------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCC
Q 010314 180 ---------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 ---------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LS 249 (513)
..+.++|++|++.+++.+||.||+.+...... .......+.+.++++.++|.+ ..++. +.+||
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS 151 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG-VPREAARARARELLARLNIPERLWHLP------PATFS 151 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhhhCC------cccCC
Confidence 12458999999999999999999987543221 111233456788999999975 34543 45999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. ..+..+||+++.+.
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999987799999988885 56778999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=361.21 Aligned_cols=219 Identities=23% Similarity=0.359 Sum_probs=183.3
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...++|+||+|.|+.+ +...+|+|+||+++|||++||+||||+||||+.++|..++.|++ |+|++||.++..
T Consensus 463 ~G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts---G~IllDG~~i~~~~~ 537 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR--PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS---GRILLDGVPISDINH 537 (716)
T ss_pred cceEEEEEeeeecCCC--CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCeehhhcCH
Confidence 3479999999999864 56689999999999999999999999999999999999999985 999999998643
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGE 252 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGq 252 (513)
.++.||+|.|+|.||.. ||+|||.|+.. . ..++.++.+.+..+-.++....+.|+ +...+|||||
T Consensus 538 ~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~----~---~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 538 KYLRRKIGLVGQEPVLFSG-SIRENIAYGLD----N---ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred HHHHHHeeeeeccceeecc-cHHHHHhcCCC----C---CCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 24679999999999965 99999988643 1 23345666666665555444333322 2335799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+||||||+++|.||||||.||+||+++...|-+.|.++.+ ++|||++.|..+ ..+.+|+|+++++|++++.|+-
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccH
Confidence 9999999999999999999999999999999999999999875 589999788763 4577999999999999999988
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
+|++.
T Consensus 687 ~eLl~ 691 (716)
T KOG0058|consen 687 DELLS 691 (716)
T ss_pred HHHhh
Confidence 88764
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=311.06 Aligned_cols=169 Identities=29% Similarity=0.434 Sum_probs=152.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|+++.|. .+.+|+++||++.+||+++|+||||||||||+++|+|+++|.. |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---GEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcccchHhhh
Confidence 46899999884 2369999999999999999999999999999999999998874 999999986532 13
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+|+.||+. |||||||||+||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~-------------------------------------------LS~G~~qrv~lara 109 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK-------------------------------------------LSGGMKQRLALAQA 109 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh-------------------------------------------cCHHHHHHHHHHHH
Confidence 56999999999999899999872 89999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|+.+|+||||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++..+||++++|++|++
T Consensus 110 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999987789999988886 478889999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=323.25 Aligned_cols=209 Identities=22% Similarity=0.349 Sum_probs=172.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|.+. .+.+|+|+||++++|++++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRPN---LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS---GSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCCC---CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhHhCCHHH
Confidence 47899999998531 2469999999999999999999999999999999999999875 999999987432
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++ .||+||+.+.. . ...+.+.++++.+++.+..+++..| ...+..|||||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~----~----~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q 146 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFG----E----YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ 146 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCC----C----CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence 1356999999998876 59999985421 1 1124567778888887766542111 1256799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++. .||++++|++|++++.|+
T Consensus 147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999864 689999888874 565 499999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=317.84 Aligned_cols=197 Identities=25% Similarity=0.314 Sum_probs=168.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~ 182 (513)
.++++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ..+
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRG-----GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEEC-----CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeCcchhhHh
Confidence 589999999984 3469999999999999999999999999999999999998875 999999976432 234
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||.||+.+...... ...+.+.++++.+||.+..++.+ +.||||||||++|||||
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la~al 142 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLG-----GEELDIAAALEAVGLAPLAHLPF------GYLSAGQKRRVALARLL 142 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcC-----CcHHHHHHHHHHcCCHHHHcCCh------hhcCHHHHHHHHHHHHH
Confidence 68999999888889999999977543321 11245789999999987766644 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++.. |+++.+..
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 999999999999999999999999999999987799999999987 45654 88887743
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=316.10 Aligned_cols=193 Identities=25% Similarity=0.310 Sum_probs=164.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|+++.|. .+.+|+|+||.+.+|++++|+||||||||||+++|+|+++|+. |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSRG-----ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccchHHhh
Confidence 46899999884 3469999999999999999999999999999999999998875 999999986432 12
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||.||+.+...... ...+.+.++++.++|.+..++.+ ..|||||||||+||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~a 141 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHG-----GAQRTIEDALAAVGLTGFEDLPA------AQLSAGQQRRLALARL 141 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcC-----CcHHHHHHHHHHcCCHHHhcCCh------hhcCHHHHHHHHHHHH
Confidence 468999999989988999999977543221 11345788999999998877755 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEE
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 320 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v 320 (513)
|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|++.. -.|++++.
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999998779999999998742 34677764
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=375.66 Aligned_cols=215 Identities=25% Similarity=0.325 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++++|++. .+.+|+|+|+++++||.+||+|+||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 476 ~~I~~~~vsf~y~~~---~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~ 549 (710)
T TIGR03796 476 GYVELRNITFGYSPL---EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDGIPREEIPRE 549 (710)
T ss_pred CeEEEEEEEEecCCC---CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEeHHHCCHH
Confidence 369999999999632 3569999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|+ .|++|||.++ .+. ..++.+.++++..++.+..++++.|.+. ...||||||
T Consensus 550 ~lr~~i~~v~Q~~~lf~-gTi~eNi~l~----~~~---~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQr 621 (710)
T TIGR03796 550 VLANSVAMVDQDIFLFE-GTVRDNLTLW----DPT---IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQR 621 (710)
T ss_pred HHHhheeEEecCChhhh-ccHHHHhhCC----CCC---CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHH
Confidence 2467999999999996 5999999653 121 2345688899999998877766554332 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.++..+++.|++ .++|+|+++|++. ....||+|++|++|++++.|+.+
T Consensus 622 QRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 622 QRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999976 4789999999873 45669999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 697 ~Ll~ 700 (710)
T TIGR03796 697 ELWA 700 (710)
T ss_pred HHHH
Confidence 8764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=327.50 Aligned_cols=193 Identities=26% Similarity=0.387 Sum_probs=171.2
Q ss_pred eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---------CCCCceEEEEcCCcccCCCCC
Q 010314 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---------EMPYGSYGFVERETTLIGSLT 198 (513)
Q Consensus 128 ~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~---------~~~~~~~~yv~Q~~~l~~~lT 198 (513)
+++|.++.-.++||.|+||||||||+|+|+|+.+|+. |.|.+||+.. ...++++|||||+..|||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPde---G~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDE---GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccc---cEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 4666666658999999999999999999999999985 9999999642 122478999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 010314 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278 (513)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgL 278 (513)
|+.||.|+.+.. .....+++.+.+|+.++++++ |..|||||||||+|+|||++.|++|+||||.+.|
T Consensus 93 VrgNL~YG~~~~-------~~~~fd~iv~lLGI~hLL~R~------P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 93 VRGNLRYGMWKS-------MRAQFDQLVALLGIEHLLDRY------PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred Eecchhhhhccc-------chHhHHHHHHHhCcHHHHhhC------CCccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 999999986432 234578899999999999984 5599999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 279 D~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|...+.+++-+|.+|+++ ...|+.++|.. +++.+++|+|++|++|++.++|+.+++..
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999976 78899987775 79999999999999999999999998864
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=315.04 Aligned_cols=186 Identities=24% Similarity=0.318 Sum_probs=159.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC---
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~~--- 180 (513)
++++|+++.|. ++.+|+|+||.+++||+++|+|+||||||||+++|+|+. +|+ +|+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHH
Confidence 46899999984 246999999999999999999999999999999999994 565 49999999875321
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
...++|++|++.+++.+|+++++ +. .+..||||||||++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l--------------------------------~~------~~~~LS~G~~qrv~ 114 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFL--------------------------------RY------VNEGFSGGEKKRNE 114 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHH--------------------------------hh------ccccCCHHHHHHHH
Confidence 23499999999888888887765 01 11389999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHh-cCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG-LFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~-~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||+|+.+|+||||||||+|||+.++..+++.|++++++++|||+++|++. .+.+ +||++++|++|++++.|+. ++.
T Consensus 115 laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~~ 192 (200)
T cd03217 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-ELA 192 (200)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HHH
Confidence 999999999999999999999999999999999999877899999999874 6666 7999999999999999944 454
Q ss_pred HHh
Q 010314 337 QHF 339 (513)
Q Consensus 337 ~~f 339 (513)
..+
T Consensus 193 ~~~ 195 (200)
T cd03217 193 LEI 195 (200)
T ss_pred hhh
Confidence 444
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=313.62 Aligned_cols=217 Identities=24% Similarity=0.368 Sum_probs=191.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|++++| +.+.+|+++|+.+++|.+++|+|||||||||||.+++.+++.++ |+|+++|.+....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~---G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccC---ceEEEeeeecccCChHHH
Confidence 5788999988 45689999999999999999999999999999999999999875 9999999886432
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.+.++.+-|+..+...+||+|.+.|+..-. ..+...+.+..++++++.++|.++.++.+. +||||||||.-||
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd------~LSGGQrQRAfIA 147 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD------ELSGGQRQRAFIA 147 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH------hcccchhhhhhhh
Confidence 245788899999999999999998863211 111114567789999999999999999765 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+.|+.+.+.++||||.++||...+.++|+.|++++++ |+|||++.|+.. .+..++|+|+-|++|+++..|+++++..
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999999999999999976 999999999874 7889999999999999999999998763
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=370.48 Aligned_cols=218 Identities=24% Similarity=0.391 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++|+|++ ..+.+|+|+|+++++||.+||+|+||||||||+++|+|+++|+. |+|.+||.+...
T Consensus 462 ~~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 462 GEIEFRNVSFAYPG---QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDGVDIRQIDPA 535 (694)
T ss_pred ceEEEEEEEEEeCC---CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHH
Confidence 36999999999953 23469999999999999999999999999999999999999975 999999987542
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
.++.++||+|++.+|+. |++|||.++ .+. ..++++.++++.+++.+..++++.|.+ ....||||||
T Consensus 536 ~lr~~i~~v~Q~~~lf~~-TI~eNi~~~----~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr 607 (694)
T TIGR03375 536 DLRRNIGYVPQDPRLFYG-TLRDNIALG----APY---ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607 (694)
T ss_pred HHHhccEEECCChhhhhh-hHHHHHhCC----CCC---CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence 23579999999999975 999999653 121 234668889999999887766654433 2357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+...+.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.+
T Consensus 608 QRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~ 684 (694)
T TIGR03375 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKD 684 (694)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHH
Confidence 99999999999999999999999999999999999999986 4789999999974 45789999999999999999998
Q ss_pred HHHHH
Q 010314 334 ACLQH 338 (513)
Q Consensus 334 ~~~~~ 338 (513)
+++..
T Consensus 685 eLl~~ 689 (694)
T TIGR03375 685 QVLEA 689 (694)
T ss_pred HHHHH
Confidence 87654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=357.14 Aligned_cols=208 Identities=22% Similarity=0.242 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P--- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~--- 180 (513)
.++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+|+|+|+++|++ |+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~---G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRLS-----DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS---GERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEcC-----CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---ceEEECCcccccCCHHH
Confidence 489999999984 2459999999999999999999999999999999999999875 999999865321 1
Q ss_pred -CceEEEEcCCccc--C-C-----CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 181 -YGSYGFVERETTL--I-G-----SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 181 -~~~~~yv~Q~~~l--~-~-----~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
.+.++|++|++.+ + + .+||+|++.+. ....++++++++.++|.+..++.++ +||||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG 139 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITALLDRRFK------YLSTG 139 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHhhhhCCcc------cCCHH
Confidence 2348999998642 1 1 46888877431 1234568899999999888877554 99999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|||||+||+||+.+|++|||||||+|||+.++..++++|++++++|.|||+++|+. ..+.++||++++|++|+++..|+
T Consensus 140 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~ 218 (490)
T PRK10938 140 ETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETGE 218 (490)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987799999988886 57889999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 219 ~~~~~ 223 (490)
T PRK10938 219 REEIL 223 (490)
T ss_pred HHHHh
Confidence 87653
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=391.31 Aligned_cols=222 Identities=25% Similarity=0.315 Sum_probs=194.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|.+ +++.+|+|+|+.+.+||+++|+||||||||||+++|+|+++|++ |+|.++|.++...
T Consensus 927 ~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pts---G~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTS---GTVLVGGKDIETNLDA 1000 (2272)
T ss_pred ceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCc---eEEEECCEECcchHHH
Confidence 46999999999942 13569999999999999999999999999999999999999975 9999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
++.+||++|++.+++.+||+|++.+.+.++... ..+.+++++++++.+||.+.+++.++ +|||||||||+||
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~-~~~~~~~v~~lL~~vgL~~~~~~~~~------~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS-WEEAQLEMEAMLEDTGLHHKRNEEAQ------DLSGGMQRKLSVA 1073 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCchhhcCChh------hCCHHHHHHHHHH
Confidence 356999999999999999999999876654211 12345678999999999988887554 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
+||+.+|+||||||||+|||+.++..++++|++++ +|+|||+++|+. +++..+||||++|++|+++..|++..+...|
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999999995 589999988886 5888999999999999999999998887655
Q ss_pred H
Q 010314 340 S 340 (513)
Q Consensus 340 ~ 340 (513)
.
T Consensus 1152 g 1152 (2272)
T TIGR01257 1152 G 1152 (2272)
T ss_pred C
Confidence 3
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=360.15 Aligned_cols=212 Identities=18% Similarity=0.272 Sum_probs=178.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.+ ..+|+|+||++++|++++|+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 264 ~~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~~~~~~~~ 333 (510)
T PRK09700 264 TVFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG---GEIRLNGKDISPRSPL 333 (510)
T ss_pred cEEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCEECCCCCHH
Confidence 368999999753 138999999999999999999999999999999999999875 9999999865321
Q ss_pred ---CceEEEEcCC---cccCCCCCHHHHHHHHHHhc---C----CC-chhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCC
Q 010314 181 ---YGSYGFVERE---TTLIGSLTVREYLYYSALLQ---L----PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYM 245 (513)
Q Consensus 181 ---~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~~~---~----~~-~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~ 245 (513)
.+.++|++|+ ..+++.+||.||+.+..... . .. ......+.++++++.++|. +..++.+
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 407 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI------ 407 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc------
Confidence 2468999998 46889999999997653211 0 00 0112234578999999996 6667654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
.+|||||||||+|||+|+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. ..+..+||++++|++|+
T Consensus 408 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGR 486 (510)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCE
Confidence 49999999999999999999999999999999999999999999999987899999988886 57889999999999999
Q ss_pred EEEEeCh
Q 010314 326 TLFFGET 332 (513)
Q Consensus 326 iv~~G~~ 332 (513)
+++.++.
T Consensus 487 i~~~~~~ 493 (510)
T PRK09700 487 LTQILTN 493 (510)
T ss_pred EEEEecC
Confidence 9988765
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=310.17 Aligned_cols=170 Identities=26% Similarity=0.402 Sum_probs=152.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.| +|+++||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccCHHH
Confidence 58999999875 8999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCc---ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++ .+++.+|++||+.+... ||||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------LS~G~~qr 112 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------LSGGNQQK 112 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh---------------------------------------cCHHHHHH
Confidence 24699999984 57888999999965310 89999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|+|+++|+. .++.++||++++|++|++
T Consensus 113 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999987789999988886 578899999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=361.88 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=185.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|++. .+.+|+|+|+++++|+.+||+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 337 ~~i~~~~v~f~y~~~---~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~---G~I~i~g~~i~~~~~~ 410 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ---PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ---GEILLNGQPIADYSEA 410 (574)
T ss_pred CeEEEEEEEEECCCC---CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHH
Confidence 469999999999532 2469999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|+. |++||+.++. +. ..++.+.++++.+++.++.++ +.|.+. ...||||||
T Consensus 411 ~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~~---~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 411 ALRQAISVVSQRVHLFSA-TLRDNLLLAA----PN---ASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred HHHhheeEEcccchhhcc-cHHHHhhcCC----Cc---cCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHH
Confidence 23569999999999965 9999997642 21 234668899999999988766 544443 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+||||||||++||+.++..+.+.|+++. +++|+|+++|++. .+ ..||+|++|++|++++.|+.+
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999986 4889999999984 44 569999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 559 ~l~~ 562 (574)
T PRK11160 559 ELLA 562 (574)
T ss_pred HHHh
Confidence 7654
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=345.41 Aligned_cols=215 Identities=21% Similarity=0.262 Sum_probs=179.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..+.++||++.+.++ ..+.+|+|+||.+++|++++|+||||||||||+++|+|+++|+. |+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~--~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s---GeI~I~G~~~------ 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDG--EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK---GTVDIKGSAA------ 88 (549)
T ss_pred ceeEEEEEEEecCCC--ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc---eEEEECCEee------
Confidence 368899999887532 12469999999999999999999999999999999999999875 9999999641
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
++.+...+++.+||+||+.+...+... ...+..+.+.++++.++|.+..++.+ +.|||||||||+|||||+
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~~~-~~~e~~e~i~elLe~lgL~~~ld~~~------~~LSGGQrQRVaLArAL~ 159 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMMGL-TKEKIKEIIPEIIEFADIGKFIYQPV------KTYSSGMKSRLGFAISVH 159 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHcCChhHhhCCc------ccCCHHHHHHHHHHHHHH
Confidence 122234567778999999875432211 11233456788999999998887755 499999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+. ..+..+||++++|++|++++.|+++++...+
T Consensus 160 ~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 99999999999999999999999999999987799999988886 5788999999999999999999998876543
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=309.32 Aligned_cols=170 Identities=31% Similarity=0.471 Sum_probs=151.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|. .+.+++++||++++||+++|+||||||||||+++|+|+++++. |+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRYG-----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEEC-----CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccchhHH
Confidence 46899999884 2469999999999999999999999999999999999999874 999999976432
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+|++||+.+. ||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~-----------------------------------------lS~G~~qr~~l 111 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG-----------------------------------------LSGGQQQRVAL 111 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec-----------------------------------------CCHHHHHHHHH
Confidence 125699999999999889999987431 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
||||+.+|++|||||||+|||+.++..+++.|++++++ |+|+|+++|++ .++..+||++++|++|+
T Consensus 112 a~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 112 ARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999877 89999988886 57888999999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=371.03 Aligned_cols=216 Identities=23% Similarity=0.340 Sum_probs=181.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++++|++. .++.+|+|+|+++++||.+||+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 477 ~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR--PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG---GQVLLDGVPLVQYDHH 551 (711)
T ss_pred CeEEEEEEEEECCCC--CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHH
Confidence 369999999999642 23579999999999999999999999999999999999999975 999999988532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|. .|++|||.++. +. ..++.+.++++.+++.++.+++..|.+. ...||||||
T Consensus 552 ~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQk 623 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFS-GSVRENIAYGL----TD---TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK 623 (711)
T ss_pred HHHhhceEEecCccccc-cCHHHHHhcCC----CC---CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHH
Confidence 2357999999999996 59999997642 21 2346688899999998887766544332 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+++|+|||||||||+||+.+...+.+ .. ...++|+|+++|++. ....||+|++|++|++++.|+.+
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999988 22 235889999999874 45679999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++.+
T Consensus 699 eL~~ 702 (711)
T TIGR00958 699 QLME 702 (711)
T ss_pred HHHh
Confidence 8764
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=343.54 Aligned_cols=216 Identities=25% Similarity=0.371 Sum_probs=186.4
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
+..++|+|+++.|. .++++|+++||+|++||-+||+|+|||||||++|+|.++.. . +|+|++||.++..
T Consensus 349 ~~~I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSL 420 (591)
T ss_pred CCcEEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhCh
Confidence 44699999999995 34569999999999999999999999999999999999987 4 4999999987532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGE 252 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGq 252 (513)
.++.||||||+..||.. ||.+|+.|+. +. ...++|.++.+..++.+...++++|+ .....|||||
T Consensus 421 ~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn----~s---as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGe 492 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFND-TILYNIKYGN----PS---ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGE 492 (591)
T ss_pred HHhhhheeEeCCcccccch-hHHHHhhcCC----CC---cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccch
Confidence 24579999999999965 9999998753 11 34566888999999998877775542 2446699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||||+||||++.+|+|+++|||||+||..+..++++.+... ..++|+|++.|.. ....-||+|++|++|++...|+.
T Consensus 493 kQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTH 569 (591)
T ss_pred HHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccH
Confidence 99999999999999999999999999999999999999994 4589999999986 45678999999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
++++.
T Consensus 570 ~ell~ 574 (591)
T KOG0057|consen 570 SELLA 574 (591)
T ss_pred HHHhh
Confidence 98875
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=371.42 Aligned_cols=216 Identities=21% Similarity=0.295 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++|.|+. .+.+|+|+|+++++|+.+||+|+||||||||+++|+|+++|+. |+|++||.+...
T Consensus 472 ~~I~~~~vsf~y~~----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 472 GDIVINDVSYSYGY----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS---GEILLNGFSLKDIDRH 544 (708)
T ss_pred CcEEEEEEEEEcCC----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC---cEEEECCEEHHHcCHH
Confidence 36999999999952 3469999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
.++.++||+|++.+|+. |++|||.++. .+. ..++.+.++++..++.+..+.++.|.+ ....||||||
T Consensus 545 ~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~---~~~---~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr 617 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSG-SILENLLLGA---KEN---VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617 (708)
T ss_pred HHHHheEEEecCceehhH-HHHHHHhccC---CCC---CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence 23579999999999965 9999997641 111 234568889999999887766554433 2356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+...+++.|+++ .++|+|+++|++. ....||+|++|++|++++.|+.+
T Consensus 618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~ 693 (708)
T TIGR01193 618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHD 693 (708)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999985 4789999999874 45789999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 694 ~L~~ 697 (708)
T TIGR01193 694 ELLD 697 (708)
T ss_pred HHHh
Confidence 8754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=361.87 Aligned_cols=216 Identities=28% Similarity=0.413 Sum_probs=183.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++|+|+++.|++ ++++|+|+||++++||.+||+||||||||||+++|+|++.|+. |+|.+||.++..
T Consensus 327 ~~I~f~~vsf~y~~----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~---G~I~idg~dI~~i~~~ 399 (567)
T COG1132 327 GSIEFENVSFSYPG----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS---GEILIDGIDIRDISLD 399 (567)
T ss_pred CeEEEEEEEEEcCC----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCEehhhcCHH
Confidence 35999999999952 4579999999999999999999999999999999999999964 999999988643
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
.++.++||+|++.+|. .||+||+.++. +. ..++.+.++++..++.++..+++.|.+ ....||||||
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~----~~---at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-GTIRENIALGR----PD---ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred HHHHhccEEcccceeec-ccHHHHHhcCC----CC---CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 2467999999999997 69999997752 21 234567888888887776555443333 3356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+||+||||||+||+.+...+.+.++++. +++|+|+++|+++ .+.. ||+|++|++|++++.|+.+
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999887 5678888889874 4555 9999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 549 eLl~ 552 (567)
T COG1132 549 ELLA 552 (567)
T ss_pred HHHH
Confidence 8865
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=319.71 Aligned_cols=195 Identities=30% Similarity=0.439 Sum_probs=163.4
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCC--CCCHHHHHHHHHH
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG--SLTVREYLYYSAL 208 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~--~lTV~E~l~~~~~ 208 (513)
|.+++||+++|+|+||||||||+++|+|+++|++ |+|.++|++.....+.++|++|++.+++ .+|+.||+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4678999999999999999999999999999875 9999999865333456999999987643 4799999977532
Q ss_pred hc---CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010314 209 LQ---LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (513)
Q Consensus 209 ~~---~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~ 285 (513)
.. .........+.+.++++.+++.+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 11 00111123456889999999988777654 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 286 i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+.|++++++|.|+|+++|+. .++.++||++++| +|++++.|+++++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999987799999998887 4788999999999 89999999887653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=360.74 Aligned_cols=215 Identities=23% Similarity=0.341 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.|++ .+.+|+|+|+++++|+.++|+|+||||||||+|+|+|+++|.. |+|.+||.+....
T Consensus 334 ~I~~~~vsf~y~~----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~---G~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 334 AVEFDDVSFSYDN----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS---GRILIDGTDIRTVTRAS 406 (588)
T ss_pred eEEEEEEEEEeCC----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEEhhhCCHHH
Confidence 6999999999953 2459999999999999999999999999999999999999975 9999999875432
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqrq 254 (513)
++.++|++|++.+|+. |++||+.++. +. ..++.+.++++.+++.+..+++..|.+. ...|||||||
T Consensus 407 ~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~---~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~Q 478 (588)
T PRK13657 407 LRRNIAVVFQDAGLFNR-SIEDNIRVGR----PD---ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ 478 (588)
T ss_pred HHhheEEEecCcccccc-cHHHHHhcCC----CC---CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHH
Confidence 3579999999999964 9999997631 21 2245678889999988776655433332 3569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|++|||||+.+|+||+||||||+||+.++..+++.|+++. .++|+|+++|++. ..+.||+|++|++|+++..|+.++
T Consensus 479 RialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999875 4789999999973 467899999999999999999877
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
...
T Consensus 556 l~~ 558 (588)
T PRK13657 556 LVA 558 (588)
T ss_pred HHH
Confidence 653
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=321.71 Aligned_cols=207 Identities=23% Similarity=0.296 Sum_probs=167.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|.++ ....+|+++|+.+++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 10 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 10 GIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG---GQVLLDGKPISQYEHK 84 (226)
T ss_pred ceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---cEEEECCCchHHcCHH
Confidence 468999999999532 12369999999999999999999999999999999999999875 999999976421
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch-hh--HHHHHHHHHHHc--CChhHHhhhhcCCCCCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQ--RKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-~~--~~~~v~~~l~~~--~L~~~~~~~vg~~~~~~~LSGGqr 253 (513)
..+.++|++|++.+++ .||+||+.+..... .... .+ ....++++++.+ |+.+..++. +..||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~------~~~LSgG~~ 156 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC-SFECVKEAAQKAHAHSFISELASGYDTEVGEK------GSQLSGGQK 156 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCC-CHHHHHHHHHHcCcHHHHHhccccccchhhcC------CCcCCHHHH
Confidence 1246999999998886 59999997643211 1000 01 112246677777 676665553 459999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++. ++. .||++++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999875 689999899874 564 5999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=311.61 Aligned_cols=192 Identities=21% Similarity=0.284 Sum_probs=163.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~ 181 (513)
+.++|+++.|. .+.+|+++|+++++||+++|+||||||||||+++|+|+.+|+. |+|+++|.+.... .
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYH-----DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK---GEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEeC-----CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eeEEECCCccccCHHHHH
Confidence 68999999984 3469999999999999999999999999999999999999875 9999999764321 2
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|+..+++.+||+||+.+.... .. ....+.++++.+++.+..++.+ ..||||||||++||||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~~rv~lara 141 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHF--SP----GAVGITELCRLFSLEHLIDYPC------GLLSSGQKRQVALLRL 141 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhc--Cc----chHHHHHHHHHcCCchhhhCCh------hhcCHHHHHHHHHHHH
Confidence 4689999999888899999999875421 11 1246789999999987766654 4899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEE
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (513)
|+.+|++|||||||+|||+.++..+.+.|+++++.|.|||+++|++. ....||..+
T Consensus 142 l~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999999999999999999999999999999777999999999863 345577544
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=312.79 Aligned_cols=198 Identities=25% Similarity=0.340 Sum_probs=159.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
++++||++.|.++....+.+|+++||++++|++++|+||||||||||+++|+|+.+|+. |+|.++| .++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~---G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---GSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---CeEEEcC--------EEE
Confidence 46899999985321001369999999999999999999999999999999999999875 9999998 589
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHHHHHHH
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqRv~IAr 260 (513)
|++|++.++ ..|++||+.+... . ..+.+.++++.+++.+..+....| ...+..||||||||++|||
T Consensus 70 ~~~q~~~l~-~~t~~enl~~~~~--~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lar 140 (204)
T cd03250 70 YVSQEPWIQ-NGTIRENILFGKP--F------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLAR 140 (204)
T ss_pred EEecCchhc-cCcHHHHhccCCC--c------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHH
Confidence 999999888 4699999976321 1 112345566677776554433211 1245789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+|+.+|+++||||||+|||+.++..+++ +++.+.+.|.|||+++|++ ..+.. ||++++|++|+
T Consensus 141 al~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999998 5676766689999999987 45666 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=356.61 Aligned_cols=217 Identities=25% Similarity=0.371 Sum_probs=181.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++++|++. .+.+|+|+|+++++|+.++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 315 ~~i~~~~v~~~y~~~---~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 315 GHLSVENVTIVPPGG---KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS---GSVRLDGADLKQWDRE 388 (544)
T ss_pred CeEEEEEEEEEcCCC---CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEehhhCCHH
Confidence 369999999999531 3469999999999999999999999999999999999999875 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
.++.++|++|++.+|+. |++||+.+.. +. ..++.+.++++..++.+..++++.|.+ ....||||||
T Consensus 389 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~ 460 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPG-TVAENIARFG----EN---ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR 460 (544)
T ss_pred HHhhheEEecCCcccccc-cHHHHHhccC----CC---CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHH
Confidence 23579999999999976 9999996421 11 123456677888887766655443222 3467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++...|+|+|+++|+.. ..+.||+|++|++|++++.|+.+
T Consensus 461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~ 538 (544)
T TIGR01842 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERD 538 (544)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHH
Confidence 9999999999999999999999999999999999999998766899999999974 45789999999999999999987
Q ss_pred HHH
Q 010314 334 ACL 336 (513)
Q Consensus 334 ~~~ 336 (513)
++.
T Consensus 539 ~l~ 541 (544)
T TIGR01842 539 EVL 541 (544)
T ss_pred HHh
Confidence 764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=344.77 Aligned_cols=216 Identities=26% Similarity=0.358 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|++|+|++. ..++|+|+||++++||.+||+|+||||||||+++|+|.++|++ |+|.++|.++..
T Consensus 336 ~l~~~~vsF~y~~~---~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~---G~i~~~g~~~~~l~~~~ 409 (573)
T COG4987 336 ALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ---GSITLNGVEIASLDEQA 409 (573)
T ss_pred eeeeccceeecCCC---ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC---CeeeECCcChhhCChhh
Confidence 79999999999753 3469999999999999999999999999999999999999985 999999977532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrq 254 (513)
.++.++++.|..++|.. |+++||.++. + ...++.+.++++.+||+++....+.| .+..+.|||||||
T Consensus 410 ~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~---~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 410 LRETISVLTQRVHLFSG-TLRDNLRLAN----P---DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred HHHHHhhhccchHHHHH-HHHHHHhhcC----C---CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 23468999999999965 9999996642 2 23567789999999999876554321 2344789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|++|||+|+++.++++|||||.|||+.+..+|+++|.+-. +|+|+|++|||.. -.+.||+|++|++|++++.|...+
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHh
Confidence 9999999999999999999999999999999999998865 4899999999975 357899999999999999999988
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 559 Ll~ 561 (573)
T COG4987 559 LLA 561 (573)
T ss_pred hhc
Confidence 764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=355.04 Aligned_cols=218 Identities=21% Similarity=0.271 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~-~~~~~G~I~i~G~~~~~~-- 180 (513)
..++++|+++.|... ..+.+|+|+||++++||+++|+||||||||||+++|+|+++| . +|+|.++|++....
T Consensus 256 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVIN--PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---EGNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCccccccc--ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CeEEEECCEECCCCCH
Confidence 468999999877311 124699999999999999999999999999999999999985 5 49999999875321
Q ss_pred ----CceEEEEcCCc---ccCCCCCHHHHHHHHHH--hcC-CC-chhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCC
Q 010314 181 ----YGSYGFVERET---TLIGSLTVREYLYYSAL--LQL-PG-FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGL 248 (513)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~--~~~-~~-~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~L 248 (513)
.+.++|++|+. .+++.+||+||+.+... ... .. .....++.++++++.++|.+ ..++.+ ..|
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~L 404 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI------GRL 404 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc------ccC
Confidence 24689999995 58899999999977532 110 00 11223456889999999963 456644 499
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. .++.++||++++|++|+++.
T Consensus 405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999988886 58899999999999999998
Q ss_pred EeChH
Q 010314 329 FGETL 333 (513)
Q Consensus 329 ~G~~~ 333 (513)
.++..
T Consensus 484 ~~~~~ 488 (500)
T TIGR02633 484 DFVNH 488 (500)
T ss_pred EEccc
Confidence 77543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=320.88 Aligned_cols=216 Identities=19% Similarity=0.248 Sum_probs=175.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|... .+.+|+++||.+++||+++|+|+||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 18 ~~i~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 18 GEIKIHDLCVRYENN---LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD---GKIVIDGIDISKLPLH 91 (257)
T ss_pred ceEEEEEEEEEeCCC---CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCC---CeEEECCEEhhhCCHH
Confidence 469999999998531 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqr 253 (513)
..+.++|++|++.+++ .|++||+.... . .....+.++++.+++.+..+..+.| ...+..||||||
T Consensus 92 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~~-----~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~ 162 (257)
T cd03288 92 TLRSRLSIILQDPILFS-GSIRFNLDPEC-----K---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162 (257)
T ss_pred HHhhhEEEECCCCcccc-cHHHHhcCcCC-----C---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence 1346899999998886 49999984310 0 0123355666666776655544311 124568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|++|||||||+|||+.++..+++.|+++. ++.|||+++|++. .+.. ||++++|++|+++..|+++
T Consensus 163 qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g~~~ 239 (257)
T cd03288 163 QLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECDTPE 239 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999975 4899999999875 5554 9999999999999999987
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 240 ~~~~ 243 (257)
T cd03288 240 NLLA 243 (257)
T ss_pred HHHh
Confidence 7643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=318.38 Aligned_cols=191 Identities=26% Similarity=0.333 Sum_probs=167.4
Q ss_pred ceEEEEeEEEEEeccc--cc--cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC
Q 010314 104 ASVVWKDLTVTIKGKR--RY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~--~~--~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~ 179 (513)
+.++++||++.|..+. .. ...+++||||.+++||+++|+|+||||||||-|+|.|+++|++ |+|+++|++...
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~---G~i~f~g~~i~~ 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS---GEILFEGKDITK 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC---ceEEEcCcchhh
Confidence 4689999999997532 11 2479999999999999999999999999999999999999985 999999986422
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.. ..+..+++.++|+.+||.. .+++ ||++||||||||++|
T Consensus 80 ~~---------------------------------~~~~~~~v~elL~~Vgl~~~~~~r------yPhelSGGQrQRi~I 120 (268)
T COG4608 80 LS---------------------------------KEERRERVLELLEKVGLPEEFLYR------YPHELSGGQRQRIGI 120 (268)
T ss_pred cc---------------------------------hhHHHHHHHHHHHHhCCCHHHhhc------CCcccCchhhhhHHH
Confidence 11 1245577999999999864 5555 788999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+++++|||+|+||...+.+++++|+++.++ |.|.++++|+. ..+..+||||.+|+.|++|+.|+.++++.
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 99999999999999999999999999999999999865 99999988886 58999999999999999999999998764
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=354.15 Aligned_cols=218 Identities=23% Similarity=0.256 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.|.... ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 4 ~l~~~nl~~~y~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSGE-EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS---GTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCCC-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcCcCCHHH
Confidence 589999999995321 23469999999999999999999999999999999999999875 9999999875321
Q ss_pred -----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+|+.||+.+...... ....+.++++.++++.+||.+..++.+ ..|||||+||
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~lgl~~~~~~~~------~~LS~Gq~qr 152 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG-LERKQRLLRAQELLQRLGLEDRVEYQP------SQLSGGQQQR 152 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhhhcCCc------ccCCHHHHHH
Confidence 2468999999999999999999987643321 111344567889999999998877755 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
++|||||+.+|++|||||||+|||+.++..+.++|++++++|+|+|+++|+.. .+ ..||++++|++|++++.|++++.
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence 99999999999999999999999999999999999999877999999988864 44 57999999999999999987653
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=305.25 Aligned_cols=168 Identities=28% Similarity=0.456 Sum_probs=148.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++|+++.|.+. .+.+++++|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPGA---EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCCC---CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEEcccCCHHHH
Confidence 4689999988531 2459999999999999999999999999999999999999875 999999987532 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+++. ||+||+ ||||||||++|||
T Consensus 75 ~~~i~~~~q~~~~~~~-tv~~~l--------------------------------------------LS~G~~qrv~la~ 109 (173)
T cd03246 75 GDHVGYLPQDDELFSG-SIAENI--------------------------------------------LSGGQRQRLGLAR 109 (173)
T ss_pred HhheEEECCCCccccC-cHHHHC--------------------------------------------cCHHHHHHHHHHH
Confidence 3568999999988874 998876 8999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+.. .+ ..||++++|++|++
T Consensus 110 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 110 ALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999877999999999874 55 58999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=312.36 Aligned_cols=198 Identities=22% Similarity=0.308 Sum_probs=163.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|... .+.+|+|+|+.+++|++++|+|+||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 5 ~~l~~~~l~~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 78 (207)
T cd03369 5 GEIEVENLSVRYAPD---LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE---GKIEIDGIDISTIPLE 78 (207)
T ss_pred CeEEEEEEEEEeCCC---CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEhHHCCHH
Confidence 368999999998531 2369999999999999999999999999999999999998875 999999987421
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++ .||+||+.+.. .. ..+.+.+.++ .++ .+..|||||+|||+|
T Consensus 79 ~~~~~i~~v~q~~~~~~-~tv~~~l~~~~-----~~---~~~~~~~~l~-------~~~------~~~~LS~G~~qrv~l 136 (207)
T cd03369 79 DLRSSLTIIPQDPTLFS-GTIRSNLDPFD-----EY---SDEEIYGALR-------VSE------GGLNLSQGQRQLLCL 136 (207)
T ss_pred HHHhhEEEEecCCcccC-ccHHHHhcccC-----CC---CHHHHHHHhh-------ccC------CCCcCCHHHHHHHHH
Confidence 1346999999998887 59999995421 11 1122333333 122 456999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||+|+.+|++|||||||+|||+.++..++++|+++. +|.|+|+++|+.. .+.. ||++++|++|+++..|++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999999999985 4899999888874 5654 999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=328.06 Aligned_cols=230 Identities=23% Similarity=0.274 Sum_probs=197.6
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC-
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~- 179 (513)
...|.++||++.|.... +...++++|||.+++||.+||+|+||||||-..+.++|+++.. ...+|+|.++|.+.-.
T Consensus 4 ~~lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CcceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 35789999999996432 4567999999999999999999999999999999999999863 2357999999987311
Q ss_pred --------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCC
Q 010314 180 --------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 --------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LS 249 (513)
...+|+++||++ .|.|-.|+...+.....++......+.++++.++|+.+|+.+-..++ +.||++||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl---~~yPHeLS 159 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRL---DAYPHELS 159 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhh---hhCCcccC
Confidence 124699999997 68888999999887766654433356678899999999998766654 45999999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|||||||.||+||+++|++||.||||++||...+.+|+++|++|.++ |..++++||+. ..+.+++|||+||.+|++|+
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEee
Confidence 99999999999999999999999999999999999999999999865 99999988876 58999999999999999999
Q ss_pred EeChHHHHH
Q 010314 329 FGETLACLQ 337 (513)
Q Consensus 329 ~G~~~~~~~ 337 (513)
.|.++.++.
T Consensus 239 ~~~t~~lF~ 247 (534)
T COG4172 239 TGTTETLFA 247 (534)
T ss_pred cCcHHHHhh
Confidence 999988763
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=357.98 Aligned_cols=218 Identities=24% Similarity=0.341 Sum_probs=184.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++++|++. .+.+|+|+|+.+++||.++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 329 ~~i~~~~v~f~y~~~---~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~---G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 329 GDVEFRNVTFRYPGR---DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS---GQILLDGHDLADYTLA 402 (571)
T ss_pred CeEEEEEEEEEcCCC---CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEeHHhcCHH
Confidence 369999999999532 2469999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++|++|++.+|+. |++|||.++. +. +..++++.++++.+|+.+..++++.|.+. ...||||||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~--~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr 475 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFND-TIANNIAYGR----TE--QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475 (571)
T ss_pred HHHhhceEEccCcccccc-cHHHHHhcCC----CC--CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 13569999999999865 9999996531 11 12346688999999998877665443322 356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+||+||||||+||+.++..+++.|+++. .++|+|+++|++ .....||+|++|++|+++..|+.+
T Consensus 476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHH
Confidence 99999999999999999999999999999999999999885 478999999987 457889999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+..+
T Consensus 553 ~l~~ 556 (571)
T TIGR02203 553 ELLA 556 (571)
T ss_pred HHHH
Confidence 8653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=308.48 Aligned_cols=174 Identities=28% Similarity=0.397 Sum_probs=148.3
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------CCceEEEEcCCcc--c
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------PYGSYGFVERETT--L 193 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~~yv~Q~~~--l 193 (513)
+.+|+++||++.+||+++|+||||||||||+++|+|+++|+. |+|.++|.+... ..+.++|++|++. +
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS---GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 469999999999999999999999999999999999999875 999999987531 1246899999973 4
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 010314 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDE 273 (513)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDE 273 (513)
+ ..||+||+.+...... ....+..+++.++++.++|.+..++.+ ..|||||||||+|||||+.+|+||||||
T Consensus 82 ~-~~tv~~nl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNLG-LSEAEVERRVREALTAVGASGLRERPT------HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred c-cccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCchhhhhCCh------hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5 4799999987643221 111233456889999999988777754 4999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 274 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 274 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
||+|||+.++..+.++|++++++|+|||+++|++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 9999999999999999999987799999999986
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=306.20 Aligned_cols=174 Identities=23% Similarity=0.392 Sum_probs=151.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|+++.|.++ .+.+++|+||++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPEQ---EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCCC---CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCEEHHHHHHHHH
Confidence 4689999998532 1359999999999999999999999999999999999998875 999999986421 13
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++ .|++||+ + ..||||||||++||||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i-----------------------------------~------~~LS~G~~qrv~lara 112 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL-----------------------------------G------RRFSGGERQRLALARI 112 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh-----------------------------------c------ccCCHHHHHHHHHHHH
Confidence 46899999998886 6998876 2 3899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|+.+|++|||||||+|||+.++..+++.|+++. ++.|||+++|++. ++ ..||++++|++|++++.|
T Consensus 113 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 113 LLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999985 5889999898874 55 469999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=354.30 Aligned_cols=211 Identities=19% Similarity=0.268 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.+.++|+++. .+++|+||.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++....
T Consensus 257 ~l~~~~~~~~---------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKGP---------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA---GQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEeccccC---------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC---ceEEECCEECCCCCHHH
Confidence 5788888631 48999999999999999999999999999999999998875 9999999865321
Q ss_pred --CceEEEEcCCc---ccCCCCCHHHHHHHHHHhcC-C-C---chhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCC
Q 010314 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQL-P-G---FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (513)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~-~-~---~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LS 249 (513)
...++|++|++ .+++.+|+.||+.+...... . . .....++.+.++++.+++. +..++.+ ..||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS 398 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI------MNLS 398 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc------ccCC
Confidence 24689999986 48889999999976432110 0 0 1112235678999999994 5666654 4999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
|||||||+|||+|+.+|+||||||||+|||+.++..++++|+++++.|.|||+++|+. .++.++||++++|++|++++.
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999988886 589999999999999999999
Q ss_pred eChHH
Q 010314 330 GETLA 334 (513)
Q Consensus 330 G~~~~ 334 (513)
|++++
T Consensus 478 ~~~~~ 482 (501)
T PRK11288 478 LAREQ 482 (501)
T ss_pred Ecccc
Confidence 98765
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=352.72 Aligned_cols=212 Identities=21% Similarity=0.310 Sum_probs=178.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..+.++|+++ .+|+|+||.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++....
T Consensus 256 ~~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~---G~I~~~g~~i~~~~~~ 322 (501)
T PRK10762 256 VRLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTS---GYVTLDGHEVVTRSPQ 322 (501)
T ss_pred cEEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHH
Confidence 3578888873 26999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCc---ccCCCCCHHHHHHHHHHhcC----C-CchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCC
Q 010314 181 ---YGSYGFVERET---TLIGSLTVREYLYYSALLQL----P-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (513)
Q Consensus 181 ---~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~----~-~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~L 248 (513)
++.++|++|++ .+++.+||.||+.+...... . ....+..+.++++++.++|. +..++.+ ..|
T Consensus 323 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~L 396 (501)
T PRK10762 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI------GLL 396 (501)
T ss_pred HHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch------hhC
Confidence 23599999995 57889999999987532110 0 01122345688999999995 5666654 499
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||||+|||||+.+|+||||||||+|||+.++..+.++|++++++|.|||+++|+. .++..+||++++|++|+++.
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999987899999988886 58899999999999999999
Q ss_pred EeChHHH
Q 010314 329 FGETLAC 335 (513)
Q Consensus 329 ~G~~~~~ 335 (513)
.|++.++
T Consensus 476 ~~~~~~~ 482 (501)
T PRK10762 476 EFTREQA 482 (501)
T ss_pred EeccccC
Confidence 9887654
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=305.69 Aligned_cols=174 Identities=30% Similarity=0.483 Sum_probs=148.5
Q ss_pred EEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----C
Q 010314 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----Y 181 (513)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~ 181 (513)
+++|+++.|. .+.+|+++||.+++|++++|+||||||||||+++|+|+++|+. |+|.++|.+.... .
T Consensus 1 ~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYG-----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEEC-----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCcCCHHHHH
Confidence 3689999884 2469999999999999999999999999999999999999875 9999999764321 0
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++| +++.++|.+..++. +..||||||||++||||
T Consensus 73 ~~i~~~~q-----------------------------------~l~~~gl~~~~~~~------~~~LS~G~~qrl~lara 111 (180)
T cd03214 73 RKIAYVPQ-----------------------------------ALELLGLAHLADRP------FNELSGGERQRVLLARA 111 (180)
T ss_pred HHHhHHHH-----------------------------------HHHHcCCHhHhcCC------cccCCHHHHHHHHHHHH
Confidence 12333333 67888888776664 45999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+. .++.++||++++|++|++++.|
T Consensus 112 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 112 LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999876 88999988887 4778999999999999998653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=354.42 Aligned_cols=217 Identities=22% Similarity=0.346 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.|+.. ..+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|.. |+|.+||.+....
T Consensus 336 ~~i~~~~v~f~y~~~--~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~---G~I~i~g~~i~~~~~~ 410 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR--PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS---GRILLDGVDLRQLDPA 410 (576)
T ss_pred ceEEEEEEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHH
Confidence 369999999999632 12569999999999999999999999999999999999999975 9999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
++.++|++|++.+|+. |++|||.++ .+. ..++.+.++++.+++.+..++...|.+ ....||||||
T Consensus 411 ~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~----~~~---~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 411 ELRARMALVPQDPVLFAA-SVMENIRYG----RPD---ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred HHHHhceEEccCCccccc-cHHHHHhcC----CCC---CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 2469999999999965 999999653 121 124568889999999877766544332 2356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|++|+||||||+||+.++..+++.|+++. .++|+|+++|++ .....||+|++|++|+++..|+.+
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHH
Confidence 99999999999999999999999999999999999999985 479999999997 345779999999999999999987
Q ss_pred HHH
Q 010314 334 ACL 336 (513)
Q Consensus 334 ~~~ 336 (513)
+..
T Consensus 560 ~l~ 562 (576)
T TIGR02204 560 ELI 562 (576)
T ss_pred HHH
Confidence 764
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=361.97 Aligned_cols=217 Identities=27% Similarity=0.382 Sum_probs=183.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|+. ..+.+|+|+|+.+++|+.+||+|+||||||||+|+|+|+++|++ |+|++||.+...
T Consensus 454 ~~i~~~~vsf~y~~---~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~---G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 454 GAITFENIRFRYAP---DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADPA 527 (694)
T ss_pred CeEEEEEEEEEcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEehhhCCHH
Confidence 36999999999953 23469999999999999999999999999999999999999975 999999987542
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
.++.++||+|++.+|+ .|++||+.++ .+. ..++.+.++++.+++.+..++++.|.+ ....||||||
T Consensus 528 ~~r~~i~~v~q~~~lf~-~ti~eNi~~~----~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~ 599 (694)
T TIGR01846 528 WLRRQMGVVLQENVLFS-RSIRDNIALC----NPG---APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 599 (694)
T ss_pred HHHHhCeEEccCCeehh-hhHHHHHhcC----CCC---CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHH
Confidence 1356999999999996 4999999653 121 234567888999999887666544333 2367999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+||||||||++||+.++..+++.|+++. .++|+|+++|++. .+ ..||+|++|++|++++.|+.+
T Consensus 600 qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~-~~~d~ii~l~~G~i~~~g~~~ 676 (694)
T TIGR01846 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS-TV-RACDRIIVLEKGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-HH-HhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999999999985 5789999999974 44 569999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++.+
T Consensus 677 ~l~~ 680 (694)
T TIGR01846 677 ELLA 680 (694)
T ss_pred HHHH
Confidence 7654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=352.85 Aligned_cols=216 Identities=22% Similarity=0.266 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|++++|+.. .+.+|+|+|+++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 313 ~I~~~~v~~~y~~~---~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 313 ELDVNIRQFTYPQT---DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE---GDIRFHDIPLTKLQLDS 386 (569)
T ss_pred cEEEEEEEEECCCC---CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEHhhCCHHH
Confidence 58999999999531 2469999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqrq 254 (513)
.++.++|++|++.+|+. |++||+.++. +. ..++.+.++++.+++.+...+++.|.. ....|||||||
T Consensus 387 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSD-TVANNIALGR----PD---ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HHhheEEEccCCeeccc-cHHHHHhcCC----CC---CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 13569999999999975 9999996531 11 234567788888888766555443322 34579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|++|||||+.+|+||||||||++||+.++..+++.|+++. +++|+|+++|++. ....||+|++|++|++++.|+.++
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999985 5899999999974 356799999999999999999887
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
+..
T Consensus 536 l~~ 538 (569)
T PRK10789 536 LAQ 538 (569)
T ss_pred HHH
Confidence 653
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=329.77 Aligned_cols=186 Identities=27% Similarity=0.447 Sum_probs=161.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhh
Q 010314 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ 217 (513)
Q Consensus 141 liGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~ 217 (513)
|+||||||||||+++|+|+++|++ |+|.++|++... ..+.++|++|++.+++.+||+||+.|...... ....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~---G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~-~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDS---GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK-VPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC-CCHHH
Confidence 689999999999999999999875 999999987532 23569999999999999999999998754321 11123
Q ss_pred HHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 010314 218 RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST- 296 (513)
Q Consensus 218 ~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~- 296 (513)
..++++++++.++|.+..++.+ .+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.++
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKP------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCCh------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 4467889999999998887754 599999999999999999999999999999999999999999999999765
Q ss_pred CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 297 g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+|+|+++|+. .++..+||++++|++|+++..|+++++..
T Consensus 151 g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 89999988886 57899999999999999999999988754
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=332.82 Aligned_cols=213 Identities=23% Similarity=0.315 Sum_probs=187.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--C-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--P- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~- 180 (513)
..++++++++.|+ +..+++||||++++||+.||+|+||||||||+++|.|+++|++ |+|.++|++... +
T Consensus 3 ~~l~~~~itK~f~-----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~---GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 3 PALEMRGITKRFP-----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDGKEVRIKSPR 74 (501)
T ss_pred ceEEEeccEEEcC-----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCc---ceEEECCEEeccCCHH
Confidence 4689999999994 5679999999999999999999999999999999999999985 999999987532 2
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcC--CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQL--PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
+..||+|+|+..|+|++||.||+..+..-.. .......+++++++.+..||.=-.+..++ +||-|||||
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~------dLsVG~qQR 148 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA------DLSVGEQQR 148 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee------cCCcchhHH
Confidence 2469999999999999999999987653211 11224566789999999999866666555 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|.|-++|..+|++|||||||+-|-|....++++.|++|+++|+|||++||-. .++.++|||+.||.+|+++..-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999999999999999988876 69999999999999999886655
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=349.37 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=176.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|++. .+|+||||.+++|++++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 267 ~~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 267 PVLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNGKEINALSTA 333 (510)
T ss_pred ceEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEECCCCCHH
Confidence 3588899873 15999999999999999999999999999999999999875 9999999865321
Q ss_pred ---CceEEEEcCCc---ccCCCCCHHHHHHHHHH--hcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHH
Q 010314 181 ---YGSYGFVERET---TLIGSLTVREYLYYSAL--LQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 181 ---~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~--~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGG 251 (513)
+..++|++|++ .+++.+|+.||+..... ..........++.++++++.++|. +..++.+ ..||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG 407 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA------RTLSGG 407 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc------ccCCcH
Confidence 23689999984 48888999999854211 111111112335688999999996 6666654 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|||||+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. .++.++||++++|++|++++.|+
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999999988899999988886 58899999999999999999887
Q ss_pred hHH
Q 010314 332 TLA 334 (513)
Q Consensus 332 ~~~ 334 (513)
+++
T Consensus 487 ~~~ 489 (510)
T PRK15439 487 GAA 489 (510)
T ss_pred ccc
Confidence 754
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=308.44 Aligned_cols=201 Identities=23% Similarity=0.250 Sum_probs=161.5
Q ss_pred EEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 010314 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (513)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------- 179 (513)
.+.|+.+.|.. .+.+++|+||++++||+++|+|||||||||||++|+|+++|+. |+|.++|.+...
T Consensus 2 ~~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWGS----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE---GKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCcccccccccccc
Confidence 46788888752 2469999999999999999999999999999999999998874 999999975421
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGE 252 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGq 252 (513)
.++.++|++|++.++ ..|++||+.+... .. .....++++.++|.+..+....+ ..++..|||||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~ 145 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSP----FN----KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ 145 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCc----CC----HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence 124699999999888 5799999976421 11 12345667777876654432111 13567999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV--TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~--~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
||||+|||+|+.+|++|||||||+|||+.++..+++ +++.+.+.|.|+|+++|+.. .+ ..||++++|++|.
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 999999999999999999999999999999999998 67777666899999999874 55 5699999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=350.31 Aligned_cols=215 Identities=23% Similarity=0.293 Sum_probs=179.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|++ .+.+|+|+|+++++|+.++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 334 ~i~~~~v~~~y~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 334 AVEFRHITFEFAN----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTV---GQILIDGIDINTVTRES 406 (585)
T ss_pred eEEEEEEEEECCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCC---CEEEECCEEhhhCCHHH
Confidence 5999999999953 2358999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrq 254 (513)
.++.++|++|++.+|+ .|++||+.++. +. ..++.+.++++..++.+...+.+.|. .....|||||||
T Consensus 407 ~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~~---~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 407 LRKSIATVFQDAGLFN-RSIRENIRLGR----EG---ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred HHhheEEEccCCccCc-ccHHHHHhcCC----CC---CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 2357999999999986 59999997631 21 12344667777777776554443222 234679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|++|||||+.+|+||||||||+|||+.++..+.+.|+++. +++|+|+++|++. .+ ..||+|++|++|++++.|+.++
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999885 5899999999974 44 6699999999999999999887
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
...
T Consensus 556 l~~ 558 (585)
T TIGR01192 556 LIQ 558 (585)
T ss_pred HHH
Confidence 654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=298.30 Aligned_cols=230 Identities=21% Similarity=0.331 Sum_probs=196.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
+.|+++||.+++.++ +.||++||++|++||+.+||||||||||||.++|+|.- ....++|+|.++|+++..
T Consensus 2 ~~L~I~dLhv~v~~~----keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p-~Y~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 2 MMLEIKDLHVEVEGK----KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP-KYEVTEGEILFDGEDILELSPD 76 (251)
T ss_pred ceeEEeeeEEEecCc----hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC-CceEecceEEECCcccccCCHh
Confidence 468999999998532 47999999999999999999999999999999999973 333467999999987532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrq 254 (513)
.+..+...+|.|.=+|..|+.+.|..+...+.... ..+..+.+++.++.+++.+ ++++.++ -++||||||
T Consensus 77 ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN-----~GFSGGEkK 151 (251)
T COG0396 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN-----EGFSGGEKK 151 (251)
T ss_pred HHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC-----CCcCcchHH
Confidence 23467888999999999999999987765432221 1244567889999999976 7888775 489999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcC--CEEEEEeCCeEEEEeCh
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF--DRICLLSNGNTLFFGET 332 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~--D~v~vL~~G~iv~~G~~ 332 (513)
|..|+..++.+|++.|||||-||||..+-+.|.+.+..+++.|.+++++||+. .+..+. |+|.+|.+|+||..|.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999999999999988885 566665 99999999999999999
Q ss_pred HHHHHHhHhcCCCC
Q 010314 333 LACLQHFSNAGFPC 346 (513)
Q Consensus 333 ~~~~~~f~~~g~~~ 346 (513)
++...++..|+.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 8888888888765
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=380.45 Aligned_cols=222 Identities=20% Similarity=0.291 Sum_probs=186.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-------------------
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA------------------- 164 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~------------------- 164 (513)
..++|+||+|+|+++ ..+++|+|+||++++|+.+||+||||||||||+++|+|++.|..
T Consensus 1164 g~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR--PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred ceEEEEEEEEECCCC--CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 369999999999642 23469999999999999999999999999999999999998720
Q ss_pred --------------------------------CceeEEEECCEeCCC-----CCceEEEEcCCcccCCCCCHHHHHHHHH
Q 010314 165 --------------------------------RMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVREYLYYSA 207 (513)
Q Consensus 165 --------------------------------~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~ 207 (513)
..+|+|++||.++.. .++.++||+|++.||+ .|++|||.++.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCC
Confidence 036999999988532 2457999999999995 69999998751
Q ss_pred HhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010314 208 LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (513)
Q Consensus 208 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~ 282 (513)
+. ..++.++++++..++.++...++.|.+ ....||||||||++|||||+.+|+|||||||||+||+.+
T Consensus 1321 ----~~---at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1321 ----ED---ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred ----CC---CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 21 234568899999999888766655443 335699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEeC----CeEE-EEeChHHHHH
Q 010314 283 ALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN----GNTL-FFGETLACLQ 337 (513)
Q Consensus 283 ~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~----G~iv-~~G~~~~~~~ 337 (513)
.+.|.+.|.++. .+++|+|+++|+.+ ..+.||+|++|++ |+++ +.|+.++++.
T Consensus 1394 E~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1394 EKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999999986 36899999999873 4567999999999 9955 8999888753
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=314.67 Aligned_cols=205 Identities=21% Similarity=0.313 Sum_probs=167.0
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...++++|+++. .+.+|+++||.+++||+++|+|+||||||||+++|+|+++|.. |+|.++|
T Consensus 37 ~~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~---G~I~i~g-------- 98 (282)
T cd03291 37 DNNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKHSG-------- 98 (282)
T ss_pred CCeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC--------
Confidence 356999999984 1359999999999999999999999999999999999999875 9999988
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVR 257 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqRv~ 257 (513)
.++|++|++.+++. ||+||+.+.... . ...+.++++.+++.+..+....+ ...+..|||||||||+
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~~---~-----~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~ 169 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVSY---D-----EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARIS 169 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhccccc---C-----HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHH
Confidence 38999999988875 999999763211 0 12234556667776555443211 1234689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||+|+.+|+||||||||+|||+.++..+++.+ +.+. ++.|||+++|+.. .+ ..||++++|++|++++.|+++++.
T Consensus 170 lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 170 LARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999865 5554 4789999888874 45 579999999999999999988764
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 247 ~ 247 (282)
T cd03291 247 S 247 (282)
T ss_pred h
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=343.77 Aligned_cols=207 Identities=18% Similarity=0.261 Sum_probs=173.3
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
++++|++++|. .+.+|+|+||+|++|++++|+||||||||||||+|+|+++|+. |+|.++|. ..++
T Consensus 2 l~i~~ls~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFG-----AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSA---GNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEeC-----CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEEE
Confidence 68999999984 3469999999999999999999999999999999999999875 99999873 3589
Q ss_pred EEcCCcccCCCCCHHHHHHHHHH-h-----------cCCC---c----------------hhhHHHHHHHHHHHcCChhH
Q 010314 186 FVERETTLIGSLTVREYLYYSAL-L-----------QLPG---F----------------FCQRKNVVEDAIHAMSLSDY 234 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~-~-----------~~~~---~----------------~~~~~~~v~~~l~~~~L~~~ 234 (513)
|++|++.+++.+||.|++.++.. . ..+. . ..+.+.++.++++.+||.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999989999999999976421 0 0000 0 00123567889999999764
Q ss_pred H-hhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHh
Q 010314 235 A-NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (513)
Q Consensus 235 ~-~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (513)
. ++. +..|||||||||+||++|+.+|+||||||||+|||+.++..+.++|++ .|.|||+++|+. ..+..
T Consensus 148 ~~~~~------~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~ 217 (530)
T PRK15064 148 QHYGL------MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNS 217 (530)
T ss_pred HhcCc------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHh
Confidence 4 343 349999999999999999999999999999999999999999999863 588999988876 57889
Q ss_pred cCCEEEEEeCCeE-EEEeChHHHH
Q 010314 314 LFDRICLLSNGNT-LFFGETLACL 336 (513)
Q Consensus 314 ~~D~v~vL~~G~i-v~~G~~~~~~ 336 (513)
+||+|++|++|++ ++.|++++..
T Consensus 218 ~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 218 VCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred hcceEEEEeCCEEEEecCCHHHHH
Confidence 9999999999999 4788887654
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=292.64 Aligned_cols=156 Identities=25% Similarity=0.450 Sum_probs=137.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|. .+++++++||++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCcCCHHHH
Confidence 46899999994 2469999999999999999999999999999999999999875 9999999764210
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.+.++|++| ||||||||++||
T Consensus 73 ~~~~i~~~~q----------------------------------------------------------LS~G~~qrl~la 94 (163)
T cd03216 73 RRAGIAMVYQ----------------------------------------------------------LSVGERQMVEIA 94 (163)
T ss_pred HhcCeEEEEe----------------------------------------------------------cCHHHHHHHHHH
Confidence 122444444 899999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|+. .++.++||++++|++|++++
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999987789999988886 46888999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=296.42 Aligned_cols=166 Identities=30% Similarity=0.507 Sum_probs=145.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++|+++.|.++ ...+|+++||++++|++++|+||||||||||+++|+|+++|.. |+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~~---~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPGR---PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhhhcCHHHH
Confidence 4689999988532 1369999999999999999999999999999999999999875 999999987532 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+++ .|+.||+ |||||||||+|||
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l--------------------------------------------LS~G~~~rl~la~ 109 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI--------------------------------------------LSGGQRQRIAIAR 109 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh--------------------------------------------hCHHHHHHHHHHH
Confidence 246899999988776 5888776 8999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|++ +++.. ||++++|++|+
T Consensus 110 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 110 ALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999864 78999988887 46666 99999999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=294.41 Aligned_cols=164 Identities=29% Similarity=0.412 Sum_probs=143.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
++++|+++.|++ .+.+|+++|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|. +.++
T Consensus 1 i~~~~~~~~~~~----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS---GRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCC------ceEE
Confidence 468999998842 2469999999999999999999999999999999999999875 99999874 5689
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
|++|++.++ ..||.||+.+. . +.+||||||||++|||||+.+
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~-------------------------------~------~~~LS~G~~~rv~laral~~~ 109 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP-------------------------------W------DDVLSGGEQQRLAFARLLLHK 109 (166)
T ss_pred EECCCCccc-cccHHHHhhcc-------------------------------C------CCCCCHHHHHHHHHHHHHHcC
Confidence 999998765 57999998541 1 248999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
|++|+|||||+|||+.++..+.+.|+++ +.|+|+++|++. ....||++++|++|.
T Consensus 110 p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 110 PKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 9999999999999999999999999886 589999999873 357999999998764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=299.73 Aligned_cols=190 Identities=22% Similarity=0.284 Sum_probs=159.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCceE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSY 184 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ 184 (513)
++++|+++.|. .+.++ ++||++++||+++|+|+||||||||+++|+|+.+|+. |+|.++|.+... ..+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSS---GNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCcccChhhhhhE
Confidence 68999999984 23455 4999999999999999999999999999999999875 999999976532 12458
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
+|++|+..+++.+||.||+.+..... ...+.+.++++.+++.+..++.+ ..||||||||++|||||+.
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIY------NSAETLYAAIHYFKLHDLLDEKC------YSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhc------ccHHHHHHHHHHcCCHhhhccCh------hhCCHHHHHHHHHHHHHhc
Confidence 99999988888899999998754221 12345778899999988777754 4999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEE
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (513)
+|++|||||||+|||+.++..+.+.|+...+.|.|+|+++|+.. .+ ..+|.+
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-chhhee
Confidence 99999999999999999999999999877777899999999874 33 446654
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=310.19 Aligned_cols=181 Identities=18% Similarity=0.216 Sum_probs=151.3
Q ss_pred eeeeeeeEE-----eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCH
Q 010314 125 VVKSSNGYA-----LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 125 iL~~vs~~i-----~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (513)
.++++++.+ ++||+++|+||||||||||+++|+|+++|+. |+|.++|. .++|++|+...++.+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~---G~i~~~g~-------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDE---GDIEIELD-------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCc-------eEEEecccccCCCCCCH
Confidence 445555555 5899999999999999999999999999875 99999984 58999999887778999
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010314 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD 279 (513)
.|++.+...... .....+.++++.++|.+..++.++ .|||||||||+||+||+.+|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFY-----THPYFKTEIAKPLQIEQILDREVP------ELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhcc-----ccHHHHHHHHHHcCCHHHhhCChh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999965432111 112346788999999888777554 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 280 SVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 280 ~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
+.++..+.++|+++++ .|+|||+++|+. ..+..+||++++|+++..+
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~ 195 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSV 195 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCee
Confidence 9999999999999976 489999988886 5788899999999765433
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=303.19 Aligned_cols=194 Identities=15% Similarity=0.133 Sum_probs=158.6
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-VNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~-i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
+|+||||.+++|++++|+||||||||||+++|+|+++|++ |+|. ++|... .+.+.+.+++.+|+.||+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s---G~i~~~~~~~~--------~~~~~~~l~~~ltv~enl 70 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDE---GDFIGLRGDAL--------PLGANSFILPGLTGEENA 70 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---CCEEEecCcee--------ccccccccCCcCcHHHHH
Confidence 7999999999999999999999999999999999998875 9997 776432 123456788999999999
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
.+........ ..+..+.+.+.++|.+..++.++ .||||||||++|||||+.+|+++||||||++||+.++
T Consensus 71 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~------~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 71 RMMASLYGLD----GDEFSHFCYQLTQLEQCYTDRVS------EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHHcCCC----HHHHHHHHHHHhChhHHhhchHh------hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 8865432111 11222344566788777777654 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHhHh
Q 010314 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341 (513)
Q Consensus 284 ~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 341 (513)
..+.+.|.+..+ +.++|+++|++ ..+..+||++++|++|++++.|+.+++...+..
T Consensus 141 ~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 141 LRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999998865443 35788877776 578889999999999999999999888766544
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=345.71 Aligned_cols=210 Identities=18% Similarity=0.225 Sum_probs=177.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.|+++....+.+|+|+|+++++|+++||+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~---G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE---GEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHH
Confidence 4699999999996421112369999999999999999999999999999999999999975 9999999876431
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
++.++|++|++.+|.. |+++|+. + ...++.+.++++.+++.+..+..+.|.+....||||||||++|
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~-------~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlal 481 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEG-------E---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLAL 481 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccc-------c---chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHH
Confidence 2568999999998865 7888741 1 1234568889999999998888777777778999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK-KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
||||+.+|+||||||||++||+.++..+.+.+. .+...|+|+|+++|++. ..+.||+|++|++|++++.
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998664 55556899999999873 4678999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=343.07 Aligned_cols=208 Identities=25% Similarity=0.300 Sum_probs=173.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++||++.|.+ .+.+|+||||+|.+|++++|+|||||||||||++|+|+++|++ |+|.+++. ..
T Consensus 5 ~~l~i~~l~~~y~~----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~---G~i~~~~~------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVPP----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARPAPG------IK 71 (556)
T ss_pred EEEEEeeEEEEeCC----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CE
Confidence 36899999999941 3579999999999999999999999999999999999999875 99999752 46
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHH-h--------------cCCCc-h-------------------hhHHHHHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSAL-L--------------QLPGF-F-------------------CQRKNVVEDAIHA 228 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~-~--------------~~~~~-~-------------------~~~~~~v~~~l~~ 228 (513)
+||++|++.+++.+||.||+.++.. + ..... . .+..+++.++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 9999999999999999999976421 0 00000 0 0113467788999
Q ss_pred cCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 229 ~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
+||.. .++.+ .+|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++. .|||+++|+.
T Consensus 152 ~gl~~-~~~~~------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~- 220 (556)
T PRK11819 152 LRCPP-WDAKV------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR- 220 (556)
T ss_pred CCCCc-ccCch------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-
Confidence 99953 45544 4999999999999999999999999999999999999999999999873 4888888876
Q ss_pred HHHHhcCCEEEEEeCCeEE-EEeChHHH
Q 010314 309 TEVFGLFDRICLLSNGNTL-FFGETLAC 335 (513)
Q Consensus 309 ~~i~~~~D~v~vL~~G~iv-~~G~~~~~ 335 (513)
..+..+||+|++|++|+++ +.|+.++.
T Consensus 221 ~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 221 YFLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 6788999999999999986 77877654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=341.68 Aligned_cols=203 Identities=25% Similarity=0.348 Sum_probs=173.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++||++.|. .+.+|+|+||.|++|++++|+||||||||||+++|+|+++|+. |+|.++|. ..
T Consensus 318 ~~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGFD-----NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS---GTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEeeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 4699999999984 3469999999999999999999999999999999999998875 99999874 46
Q ss_pred EEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 184 YGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 184 ~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
++|++|++. +++.+||.|++.+.. .. ...++.++++++.+++. +..++.+ .+|||||||||+|||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~---~~---~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgGq~qrv~la~ 451 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWR---QE---GDDEQAVRGTLGRLLFSQDDIKKSV------KVLSGGEKGRMLFGK 451 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhc---cC---CccHHHHHHHHHHcCCChhHhcCcc------cccCHHHHHHHHHHH
Confidence 999999863 566799999985421 11 12235678999999994 6666654 499999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACL 336 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~ 336 (513)
+|+.+|+||||||||+|||+.++..+++.|+++ +.|||+++|+. ..+..+||++++|++|+++ +.|++.+.+
T Consensus 452 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 452 LMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 999999999999999999999999999999886 35899988886 5888999999999999998 788877654
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=326.29 Aligned_cols=222 Identities=23% Similarity=0.326 Sum_probs=187.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-- 180 (513)
...|.++++++.-++ ..+.+|+++||.+.+||.+||+||||||||||.|+|.|..+|.+ |.|.+||.+...+
T Consensus 332 ~g~L~Ve~l~~~PPg---~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~---G~VRLDga~l~qWd~ 405 (580)
T COG4618 332 QGALSVERLTAAPPG---QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS---GSVRLDGADLRQWDR 405 (580)
T ss_pred CceeeEeeeeecCCC---CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC---CcEEecchhhhcCCH
Confidence 457999999985432 34679999999999999999999999999999999999999975 9999999875433
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC-----CCCCHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM-----KGLPCGE 252 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~-----~~LSGGq 252 (513)
-+++||+||+-.||+. ||.|||.- + .. +...+.|-++.+..|..++.-+++.|++.. ..|||||
T Consensus 406 e~lG~hiGYLPQdVeLF~G-TIaeNIaR---f--~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQ 477 (580)
T COG4618 406 EQLGRHIGYLPQDVELFDG-TIAENIAR---F--GE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ 477 (580)
T ss_pred HHhccccCcCcccceecCC-cHHHHHHh---c--cc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchH
Confidence 2579999999999976 99999942 2 11 123344666667777766665555554433 5699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+++||||..+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.| .+...+|+|++|++|++..+|+.
T Consensus 478 RQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r 555 (580)
T COG4618 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPR 555 (580)
T ss_pred HHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCH
Confidence 9999999999999999999999999999999999999999999999999999987 47889999999999999999999
Q ss_pred HHHHHHhH
Q 010314 333 LACLQHFS 340 (513)
Q Consensus 333 ~~~~~~f~ 340 (513)
+|++..+.
T Consensus 556 ~eVLa~~~ 563 (580)
T COG4618 556 EEVLAKVL 563 (580)
T ss_pred HHHHHHhc
Confidence 99988754
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=340.80 Aligned_cols=212 Identities=19% Similarity=0.241 Sum_probs=174.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.+ +.+|++|||.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++....
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA---GTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCc---cEEEECCEECCCCCHH
Confidence 468999998852 259999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCc---ccCCCCCHHHHHHHHHH---hcC-CC-chhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCC
Q 010314 181 ---YGSYGFVERET---TLIGSLTVREYLYYSAL---LQL-PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (513)
Q Consensus 181 ---~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~---~~~-~~-~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~L 248 (513)
.+.++|++|+. .+++.+|+.+|..+... ... .. ......+.+.++++.+++. +..++. +.+|
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~L 392 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ------IGSL 392 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc------cccC
Confidence 23489999985 47888988877432210 110 10 1122345678899999995 455654 4599
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||||+|||+|+.+|+||||||||+|||+.++..++++|+++.++|.|||+++|+. .++..+||++++|++|+++.
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAG 471 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999988887 57889999999999999998
Q ss_pred EeCh
Q 010314 329 FGET 332 (513)
Q Consensus 329 ~G~~ 332 (513)
.+++
T Consensus 472 ~~~~ 475 (491)
T PRK10982 472 IVDT 475 (491)
T ss_pred EEcc
Confidence 7765
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=340.41 Aligned_cols=213 Identities=22% Similarity=0.338 Sum_probs=171.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~-~~~~~G~I~i~G~~~~~--- 179 (513)
..++++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|+.++ + +|+|+++|++...
T Consensus 259 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~---~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 259 PRIVLNNGVVSYN-----DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGY---SNDLTLFGRRRGSGET 330 (490)
T ss_pred ceEEEeceEEEEC-----CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCccc---CCeEEEecccCCCCCC
Confidence 4699999999984 34699999999999999999999999999999999998765 3 4999999975321
Q ss_pred ---CCceEEEEcCCcccCCC--CCHHHHHHHHHHh--cCC-CchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCH
Q 010314 180 ---PYGSYGFVERETTLIGS--LTVREYLYYSALL--QLP-GFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~--lTV~E~l~~~~~~--~~~-~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.++.. .|+++++.+.... ... ......++.++++++.++|.+ ..++.+ .+|||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSg 404 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF------HSLSW 404 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch------hhCCH
Confidence 12469999998765433 5777776543211 110 111123456889999999986 767654 49999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEEeCChHHHHh-cCCEEEEEeCCeEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFG-LFDRICLLSNGNTLF 328 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~-~~D~v~vL~~G~iv~ 328 (513)
||||||+|||||+.+|+||||||||+|||+.++..++++|+++++++ .|||+++|+. .++.+ +||++++|++|++++
T Consensus 405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~ 483 (490)
T PRK10938 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYR 483 (490)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEE
Confidence 99999999999999999999999999999999999999999998775 4689988886 46766 599999999999987
Q ss_pred EeC
Q 010314 329 FGE 331 (513)
Q Consensus 329 ~G~ 331 (513)
.-.
T Consensus 484 ~~~ 486 (490)
T PRK10938 484 YVQ 486 (490)
T ss_pred eec
Confidence 643
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=344.01 Aligned_cols=188 Identities=28% Similarity=0.395 Sum_probs=160.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++|+|++ .+++|+|+|+++++||.+||+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 333 ~~I~~~~vsf~Y~~----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~i~g~~i~~~~~~ 405 (529)
T TIGR02868 333 PTLELRDLSFGYPG----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ---GEVTLDGVSVSSLQDE 405 (529)
T ss_pred ceEEEEEEEEecCC----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhHHHH
Confidence 35999999999953 2359999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqrq 254 (513)
.++.++||+|++.+|+. |++|||.++. +. ..++++.++++..++.++.++++.|.+. ...|||||||
T Consensus 406 lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ 477 (529)
T TIGR02868 406 LRRRISVFAQDAHLFDT-TVRDNLRLGR----PD---ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ 477 (529)
T ss_pred HHhheEEEccCcccccc-cHHHHHhccC----CC---CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence 13479999999999965 9999997641 21 2346688999999998877666554443 2569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
|++|||||+.+|+|||||||||+||+.++..|.+.|+++. +++|+|+++|++
T Consensus 478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 9999999999999999999999999999999999999864 578999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=355.92 Aligned_cols=218 Identities=22% Similarity=0.320 Sum_probs=187.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||+|.|+.+ +..+||+|+|+++++|+.+||+|||||||||.+.+|-.++.|+. |.|.+||.+++..
T Consensus 986 G~I~~~~V~F~YPsR--P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~---G~V~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPTR--PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA---GKVKIDGVDIKDLNLK 1060 (1228)
T ss_pred eEEEEeeeEeeCCCC--CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCcccccCCHH
Confidence 369999999999854 56789999999999999999999999999999999999999975 9999999876432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
++++|.|.|+|.||. -|++|||.|+. .+ ...+.+.++++..+..++...++.|++. ..+||||||
T Consensus 1061 ~LR~~i~lVsQEP~LF~-~TIrENI~YG~-~~------vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQK 1132 (1228)
T KOG0055|consen 1061 WLRKQIGLVSQEPVLFN-GTIRENIAYGS-EE------VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQK 1132 (1228)
T ss_pred HHHHhcceeccCchhhc-ccHHHHHhccC-CC------CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHH
Confidence 467999999999995 59999999871 11 1345677888888877776666655443 356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||+||||||++||+||||||.||+||.++.+.|-+.|.++. .|+|.|++.|..+ ..+.||.|+|+++|++++.|+-+
T Consensus 1133 QRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1133 QRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHD 1209 (1228)
T ss_pred HHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHH
Confidence 99999999999999999999999999999999999999976 5788888889874 46789999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 1210 ~L~~ 1213 (1228)
T KOG0055|consen 1210 ELLA 1213 (1228)
T ss_pred HHHh
Confidence 8765
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=339.20 Aligned_cols=209 Identities=24% Similarity=0.279 Sum_probs=169.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++||++.|.+ .+.+|+|+||+|++|++++|+|||||||||||++|+|+.+|+. |+|.+++. ..
T Consensus 3 ~~i~~~nls~~~~~----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVPP----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN---GEARPAPG------IK 69 (552)
T ss_pred EEEEEeeEEEecCC----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CE
Confidence 36899999999941 3469999999999999999999999999999999999998875 99999752 46
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHh---------------cCCCchh--------------------hHHHHHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALL---------------QLPGFFC--------------------QRKNVVEDAIHA 228 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~---------------~~~~~~~--------------------~~~~~v~~~l~~ 228 (513)
++|++|++.+++.+||.||+.++... ..+.... ....++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 99999999999999999999874311 0000000 011234556666
Q ss_pred cCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 229 ~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
+++.. .++ .+..|||||||||+|||+|+.+|+||||||||++||+.++..+.+.|+++ +.|||+++|+.
T Consensus 150 ~~l~~-~~~------~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~- 218 (552)
T TIGR03719 150 LRCPP-WDA------DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR- 218 (552)
T ss_pred CCCCc-ccC------chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-
Confidence 66642 344 34599999999999999999999999999999999999999999999876 35888888876
Q ss_pred HHHHhcCCEEEEEeCCeEE-EEeChHHHH
Q 010314 309 TEVFGLFDRICLLSNGNTL-FFGETLACL 336 (513)
Q Consensus 309 ~~i~~~~D~v~vL~~G~iv-~~G~~~~~~ 336 (513)
..+..+||++++|++|+++ +.|+.++..
T Consensus 219 ~~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 219 YFLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred HHHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 5788999999999999976 678877643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=340.51 Aligned_cols=200 Identities=26% Similarity=0.402 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|++++|++. .+++|+|+|+++++|+.++|+||||||||||+|+|+|+++|+. |+|.++|.+...
T Consensus 320 ~i~~~~v~f~y~~~---~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 320 SLEFSGLSVAYPGR---RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE---GSIAVNGVPLADADADS 393 (529)
T ss_pred eEEEEEEEEECCCC---CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEehhhCCHHH
Confidence 69999999999642 2469999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqrq 254 (513)
.++.++||+|++.+|+ .|++||+.++. +. ..++.+.++++.+++.++.++++.|.+ ....|||||||
T Consensus 394 lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~~---~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q 465 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFA-GTIAENIRLAR----PD---ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ 465 (529)
T ss_pred HHhheEEEcCCCcccC-cCHHHHHhccC----CC---CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence 1357999999999996 59999997642 11 134568889999999887766554433 34579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
|++|||||+.+|+|||||||||+||+.+...+.+.|+++. .++|+|+++|++. ..+.||+|++|
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 9999999999999999999999999999999999999985 5789999999873 35679999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=286.21 Aligned_cols=192 Identities=21% Similarity=0.350 Sum_probs=168.7
Q ss_pred ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCceEEEEcCCcccCC
Q 010314 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIG 195 (513)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~ 195 (513)
.+.++|+++||.+.+||..+|.||||||||||+|+++-+.+|++ |++++.|++... .+..++||.|.+.||+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~---G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC---ceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 35679999999999999999999999999999999999999985 999999988643 2357999999999998
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP 274 (513)
. ||++|+.|+-.++.... .+....+.|+.++|.+ .+++.+. +||||||||++|+|-|..-|+||+||||
T Consensus 91 ~-tVeDNlifP~~~r~rr~---dr~aa~~llar~~l~~~~L~k~it------~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRP---DRAAALDLLARFALPDSILTKNIT------ELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred c-chhhccccchHHhccCC---ChHHHHHHHHHcCCchhhhcchhh------hccchHHHHHHHHHHhhcCCceEEecCc
Confidence 7 99999999876654332 3456778899999975 5666554 9999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 275 LYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
||+||+.+++.|-++|.++. ++...++.+||++ ++..+.||+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999999999999999997 6689999999887 578899999999999875
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=373.31 Aligned_cols=216 Identities=20% Similarity=0.276 Sum_probs=185.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++|+|++++|.. ..+.+|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1236 g~I~f~nVsf~Y~~---~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~---G~I~IDG~dI~~i~l~ 1309 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP---ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER---GRILIDGCDISKFGLM 1309 (1622)
T ss_pred CcEEEEEEEEEeCC---CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCEecccCCHH
Confidence 36999999999953 12469999999999999999999999999999999999999975 999999988643
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++++++|+|++.+|.. |++|||.+.. ...++.+.++++..++.++.+.++.|.+. ...||||||
T Consensus 1310 ~LR~~IsiVpQdp~LF~G-TIreNLd~~~--------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130 1310 DLRKVLGIIPQAPVLFSG-TVRFNLDPFN--------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred HHHhccEEECCCCccccc-cHHHHhCcCC--------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence 23679999999999975 9999996421 12346688999999998877666544433 246999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. .+ ..||+|++|++|+++++|+++
T Consensus 1381 QrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE~Gt~~ 1457 (1622)
T PLN03130 1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVEFDTPE 1457 (1622)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999875 4799999999874 34 459999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 1458 eLl~ 1461 (1622)
T PLN03130 1458 NLLS 1461 (1622)
T ss_pred HHHh
Confidence 9864
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=373.02 Aligned_cols=215 Identities=19% Similarity=0.271 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++|+|++++|.. ..+.+|+|+|++|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1234 ~I~f~nVsf~Y~~---~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~IdG~di~~i~~~~ 1307 (1495)
T PLN03232 1234 SIKFEDVHLRYRP---GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK---GRIMIDDCDVAKFGLTD 1307 (1495)
T ss_pred cEEEEEEEEEECC---CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---ceEEECCEEhhhCCHHH
Confidence 6999999999952 22469999999999999999999999999999999999999975 999999988542
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqrq 254 (513)
.++.++||+|++.+|+. |++|||.+.. ...++.+.++++..++.++.+.++.|.+. ...|||||||
T Consensus 1308 lR~~i~iVpQdp~LF~g-TIr~NL~~~~--------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1308 LRRVLSIIPQSPVLFSG-TVRFNIDPFS--------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred HHhhcEEECCCCeeeCc-cHHHHcCCCC--------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 24679999999999975 9999995421 12345688999999998877665543332 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. .+ ..||+|++|++|++++.|++++
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN-TI-IDCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999874 4799999999874 44 4599999999999999999998
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 1456 Ll~ 1458 (1495)
T PLN03232 1456 LLS 1458 (1495)
T ss_pred HHh
Confidence 764
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=299.82 Aligned_cols=214 Identities=27% Similarity=0.392 Sum_probs=180.9
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---C
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---M 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~ 179 (513)
.+.+.++|+++.+. ++++|+|+|+.|++||..+|+|||||||||||++|+|.++|++ |.+.+.|+... .
T Consensus 29 ~~li~l~~v~v~r~-----gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pss---g~~~~~G~~~G~~~~ 100 (257)
T COG1119 29 EPLIELKNVSVRRN-----GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSS---GDVTLLGRRFGKGET 100 (257)
T ss_pred cceEEecceEEEEC-----CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCC---CceeeeeeeccCCcc
Confidence 45799999999984 5689999999999999999999999999999999999999974 99999997632 1
Q ss_pred ---CCceEEEEcCC--cccCCCCCHHHHHHHHHH--hcCCC--chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH
Q 010314 180 ---PYGSYGFVERE--TTLIGSLTVREYLYYSAL--LQLPG--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 ---~~~~~~yv~Q~--~~l~~~lTV~E~l~~~~~--~~~~~--~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG 250 (513)
.++.||||... ..+.+..+|+|.+.-+.. ..... ..++..+++..+++.+|+.+++++..+ .||-
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~------~LS~ 174 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG------SLSQ 174 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh------hcCH
Confidence 24679999643 344557788887743321 22221 113456778999999999999998776 9999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||-|||||+.+|++||||||++|||...+..+++.|.+++.. +.++|+++||. +++-..+++++++++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999854 78899999998 68999999999999999998
Q ss_pred EeC
Q 010314 329 FGE 331 (513)
Q Consensus 329 ~G~ 331 (513)
.|-
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 873
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=285.12 Aligned_cols=223 Identities=23% Similarity=0.331 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeccc----cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 010314 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (513)
.++++||+++|.... +....+++.|||++++|+.+||+|.||||||||.|+|+|.++|++ |+|++||+....
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs---G~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC---ceEEECCcccccc
Confidence 578899999886442 223468999999999999999999999999999999999999986 999999987532
Q ss_pred ----CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHH
Q 010314 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGq 252 (513)
+.+.+-+++|++ .+.|.+.+...|..+..+...-....+.+++.+.|+.+||- +.++- +|+.||-||
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~------~~~~la~~Q 154 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY------YPHMLAPGQ 154 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc------chhhcCchh
Confidence 235678888875 68899999999988776654333345777899999999995 44443 677999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||++||||+.+|+|||.||...+||...+.++++++-+|.++ |.+.|.++.|. ..+.+++|.|+||++|++|++|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999865 99999977665 68999999999999999999999
Q ss_pred hHHHHH
Q 010314 332 TLACLQ 337 (513)
Q Consensus 332 ~~~~~~ 337 (513)
+.+++.
T Consensus 234 t~~v~a 239 (267)
T COG4167 234 TADVLA 239 (267)
T ss_pred hhhhhc
Confidence 998764
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=335.13 Aligned_cols=204 Identities=20% Similarity=0.254 Sum_probs=169.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..+.++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++|++ |+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSFG-----DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS---GTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEEC-----CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 4699999999984 3469999999999999999999999999999999999999875 99999542 25
Q ss_pred EEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+||++|+. .+++.+||.||+.+........ .....+.++++.+++.+ ..++.+ .+|||||||||+|||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~~qrv~la~a 459 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVG---NREIPSRAYVGRFNFKGGDQQKKV------GVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccccc---ccHHHHHHHHHhCCCChhHhcCch------hhCCHHHHHHHHHHHH
Confidence 89999996 7888999999998754221111 11223567899999964 556654 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC-CeEE-EEeChHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETLA 334 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~~ 334 (513)
|+.+|+||||||||+|||+.++..++++|+++. | |||+++|+. ..+..+||++++|++ |+++ +.|+.++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 999999999999999999999999999999873 4 788877776 588899999999986 7876 4565544
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=287.59 Aligned_cols=217 Identities=22% Similarity=0.322 Sum_probs=187.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEM--- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G-~~~~~--- 179 (513)
..|.++||+++|. +.++|+++||.+.+||+-+|||||||||||+|++|+|..+|+. |+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF~-----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~---G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSFG-----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEEc-----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc---ceEEEcCchhhccCCH
Confidence 4789999999994 5679999999999999999999999999999999999999975 9999999 44322
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCC-------chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCC
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG-------FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-------~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LS 249 (513)
.+..||--||.+..|..+||+|||..+.....+- ...+.+.+++++|...||.+.++...+ .||
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~------~LS 149 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA------LLS 149 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh------hhc
Confidence 1346888899999999999999998875432111 113445689999999999999988776 899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
-||||++.|++.|+.+|++|++|||++|+--....+.-++|+.|+. +++|+++-|+ +..+.+++|+|.+|++|.+...
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHD-M~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHD-MGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEecc-HHHHHHhhheeEEEeccceeec
Confidence 9999999999999999999999999999999999999999999974 5677775555 5799999999999999999999
Q ss_pred eChHHHH
Q 010314 330 GETLACL 336 (513)
Q Consensus 330 G~~~~~~ 336 (513)
|+.+++.
T Consensus 228 Gsld~v~ 234 (249)
T COG4674 228 GSLDEVQ 234 (249)
T ss_pred ccHHHhh
Confidence 9988764
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=335.42 Aligned_cols=204 Identities=18% Similarity=0.190 Sum_probs=169.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|++++|++ .+.+|+|+|+++++|+.+||+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 322 ~i~~~~v~f~y~~----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 394 (547)
T PRK10522 322 TLELRNVTFAYQD----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVTAEQPED 394 (547)
T ss_pred eEEEEEEEEEeCC----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCCCCHHH
Confidence 6999999999962 2359999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.++.++|++|++.+|+. |++||- + ...++.++++++.+++.+..+.. .+......||||||||++||
T Consensus 395 ~~~~i~~v~q~~~lf~~-ti~~n~--------~---~~~~~~~~~~~~~~~l~~~~~~~-~~~~~G~~LSgGq~qRl~lA 461 (547)
T PRK10522 395 YRKLFSAVFTDFHLFDQ-LLGPEG--------K---PANPALVEKWLERLKMAHKLELE-DGRISNLKLSKGQKKRLALL 461 (547)
T ss_pred HhhheEEEecChhHHHH-hhcccc--------C---chHHHHHHHHHHHcCCchhhhcc-ccCCCCCCCCHHHHHHHHHH
Confidence 23579999999998864 787761 1 12345678889999987654421 11111358999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||+.+|+|||||||||+||+.++..+++.|.++.+ .++|+|+++|++ .....||+|++|++|++++..
T Consensus 462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 462 LALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999987653 589999999987 356789999999999998763
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=334.95 Aligned_cols=198 Identities=24% Similarity=0.272 Sum_probs=171.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++|+++.|.+ ..|+++||.+++||+++|+||||||||||+++|+|+++|+. |+|.++ ..
T Consensus 339 ~~l~~~~ls~~~~~------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~---G~I~~~--------~~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLGD------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE---GEVDPE--------LK 401 (590)
T ss_pred eEEEEcceEEEECC------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEe--------ee
Confidence 46999999998842 35999999999999999999999999999999999999875 999985 24
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
++|++|+..+++.+||+|++.+.... .. ....+.++++.++|.+..++.+ ..|||||||||+|||+|+
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~-~~-----~~~~~~~~L~~l~l~~~~~~~~------~~LSGGe~QRvaiAraL~ 469 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDD-LG-----SSYYKSEIIKPLQLERLLDKNV------KDLSGGELQRVAIAACLS 469 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhh-cC-----hHHHHHHHHHHCCCHHHHhCCc------ccCCHHHHHHHHHHHHHh
Confidence 89999998888899999999764211 11 1235688999999998887755 499999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
.+|+||||||||+|||+.++..+.++|++++++ |+|||+++|+. ..+..+||++++|+ |++...|..
T Consensus 470 ~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 470 RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 999999999999999999999999999999864 89999988886 57889999999996 588777763
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=333.50 Aligned_cols=203 Identities=21% Similarity=0.265 Sum_probs=168.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++|+++.|. ++.+|+|+||.|++|++++|+||||||||||+++|+|+++|++ |+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGFG-----DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS---GTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEECCc------eE
Confidence 4699999999984 3469999999999999999999999999999999999999875 99999542 25
Q ss_pred EEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
++|++|+. .+++.+||.|++.+........ .....+.++++.+++.+ ..++.+ ..|||||||||+|||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLG---KREVPSRAYVGRFNFKGSDQQKKV------GQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccC---cchHHHHHHHHhCCCChhHhcCch------hhCCHHHHHHHHHHHH
Confidence 89999986 5788899999998753221111 11223567899999964 556654 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC-CeEE-EEeChH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETL 333 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~ 333 (513)
|+.+|+||||||||+|||+.++..++++|+++. + |||+++|+. ..+..+||++++|++ |+++ +.|+.+
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 999999999999999999999999999999873 3 788878876 578899999999986 5776 445543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=365.97 Aligned_cols=216 Identities=19% Similarity=0.236 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..|+|+||+++|+.. ...+|+||||+|++||.+||+|+||||||||+++|.|+++|++ |+|++||.++..
T Consensus 1307 G~I~f~nVsf~Y~~~---~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~---G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG---LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG---GEIRVNGREIGAYGLR 1380 (1560)
T ss_pred CeEEEEEEEEEeCCC---CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccCCHH
Confidence 369999999999532 2359999999999999999999999999999999999999975 999999988643
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|.. ||+|||... . ...++.+.++++.++|.++...+..|.+. ...||||||
T Consensus 1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~------~--~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPF------L--EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred HHHhcceEECCCCccccc-cHHHHhCcc------c--CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 24679999999999975 999999431 1 12346789999999998876655444332 257999999
Q ss_pred HHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 254 RRVRIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 254 qRv~IAraL~~~-P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||++|||||+.+ |+|||||||||+||+.+...|.+.|++.. .++|||+++|+.. ....||+|++|++|++++.|++
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~ 1528 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSP 1528 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCH
Confidence 999999999996 89999999999999999999999999864 4789999999873 4567999999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
++++.
T Consensus 1529 ~eLl~ 1533 (1560)
T PTZ00243 1529 RELVM 1533 (1560)
T ss_pred HHHHh
Confidence 98764
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=299.11 Aligned_cols=205 Identities=25% Similarity=0.345 Sum_probs=173.6
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CceEEEEc-CCcccCCCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVE-RETTLIGSL 197 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~~~~~yv~-Q~~~l~~~l 197 (513)
..+++|+||.|++|++++++|+|||||||++|+|+|++.|++ |.|.++|...... .+.+++|+ |..++...+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~---G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCC---CeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 458999999999999999999999999999999999999986 9999999764322 13566663 556677777
Q ss_pred CHHHHHHHHHHh-cCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 198 TVREYLYYSALL-QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 198 TV~E~l~~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
.+.|.+...... ..|. ++-.++.+.+.+.++|++..+..+ +.||-|||.|+.||.+|+++|+||||||||-
T Consensus 114 p~~ds~~v~~~Iy~Ipd--~~F~~r~~~l~eiLdl~~~lk~~v------r~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 114 PALDSLEVLKLIYEIPD--DEFAERLDFLTEILDLEGFLKWPV------RKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhhhhHHHHHHHHhCCH--HHHHHHHHHHHHHhcchhhhhhhh------hhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 777777554332 2333 345677888999999998887754 5999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 277 HLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
|||..++..|.+.|++..+ ++.||++++|.. +.+..+||||++|+.|++++.|+..++...|
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999999999999999985 589999988876 5899999999999999999999998876654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=366.19 Aligned_cols=216 Identities=20% Similarity=0.254 Sum_probs=184.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++|+|++++|+.. ...+|+||||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1283 g~I~f~nVsf~Y~~~---~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~---G~I~IdG~dI~~i~~~ 1356 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED---LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE---GEIIIDGLNIAKIGLH 1356 (1522)
T ss_pred CcEEEEEEEEEeCCC---CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC---CeEEECCEEccccCHH
Confidence 369999999999632 2369999999999999999999999999999999999999875 999999998643
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|.. |++|||... . ...++.+.++++.+++.++.+++++|.+. ...||||||
T Consensus 1357 ~LR~~i~iVpQdp~LF~g-TIr~NLdp~-----~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1357 DLRFKITIIPQDPVLFSG-SLRMNLDPF-----S---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred HHHhcCeEECCCCcccCc-cHHHHcCcc-----c---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 24579999999999976 999999521 1 12345688899999998877666554432 246999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+++|+.. ....||+|++|++|+++++|+++
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPS 1504 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998864 4789999999874 34569999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 1505 eLl~ 1508 (1522)
T TIGR00957 1505 NLLQ 1508 (1522)
T ss_pred HHHh
Confidence 8764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=364.01 Aligned_cols=212 Identities=20% Similarity=0.313 Sum_probs=173.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEeCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAKSEM---- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~-G~~~~~---- 179 (513)
.++++||++.|+.+ ..+++|+|+||++++||++||+||||||||||+++|+|+++|+. |+|+++ |.+...
T Consensus 382 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~i~~g~~i~~~~~~ 456 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR--KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE---GDIIINDSHNLKDINLK 456 (1466)
T ss_pred cEEEEEEEEEcCCC--CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCC---CeEEEeCCcchhhCCHH
Confidence 69999999999642 23469999999999999999999999999999999999999975 999995 565421
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC----------C------------------------------------
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQL----------P------------------------------------ 212 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~----------~------------------------------------ 212 (513)
.++.++||+|++.+|+ .||+|||.++..... +
T Consensus 457 ~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 457 WWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 1356999999999997 499999988531000 0
Q ss_pred ----CchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 213 ----GFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 213 ----~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
......++.+.++++.+++.++.+.++.|. ..+..||||||||++|||||+.+|+|||||||||+||+.++
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 000112456888999999988876554432 34578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 284 LLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 284 ~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
..|.+.|+++.+ .|+|+|+++|+.. .+ +.||+|++|++|
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 999999999975 5899999999874 44 689999999986
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=301.86 Aligned_cols=198 Identities=21% Similarity=0.216 Sum_probs=162.1
Q ss_pred eEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC
Q 010314 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE 178 (513)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~ 178 (513)
+|+++|.. .+.+|+|+| .+++|++++|+|||||||||||++|+|+++|+. |+|+ ++|.+..
T Consensus 5 ~~~~~y~~----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~---G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYGP----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNL---GKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred CcceeecC----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEeeccccchhhhhccCchhh
Confidence 57777732 235899999 499999999999999999999999999999975 9996 7776542
Q ss_pred CC-------CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 179 MP-------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 179 ~~-------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
.. ...++|++|...+++. ++.+++.+.. . . ......+.++++.+||.+..++.+ ..||||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--~--~--~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G 143 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--K--K--KDERGKLDELVDQLELRHVLDRNI------DQLSGG 143 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--c--h--hHHHHHHHHHHHHcCCchhhcCCh------hhCCHH
Confidence 11 1236899998888874 8888886642 1 1 123456789999999988777654 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||++|||+|+.+|+++||||||++||+.++..+.+.|++++++++|||+++|+. ..+..+||+|++|+ |++++.|
T Consensus 144 ~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 144 ELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999999999999987789999988876 57888999999995 6565543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=359.94 Aligned_cols=215 Identities=19% Similarity=0.259 Sum_probs=182.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++|+||+++|+. ..+.+|+||||+|++||.+||+|+||||||||+++|+|+++ . +|+|++||.++..
T Consensus 1216 g~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred CeEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHH
Confidence 36999999999963 23579999999999999999999999999999999999986 3 4999999988643
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++|+||++.+|+. ||+|||.... ...++.+.++++.++|.+....+++|.+. ...||||||
T Consensus 1289 ~lR~~is~IpQdp~LF~G-TIR~NLdp~~--------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSG-TFRKNLDPYE--------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred HHHhceEEEeCCCccCcc-CHHHHhCccc--------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 23579999999999975 9999994311 12356789999999998776665443332 246999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+...|.+.|++.. .++|||+++|+.. ....||+|++|++|+++++|++.
T Consensus 1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~ 1436 (1490)
T TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQ 1436 (1490)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999864 4799999999873 34569999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 1437 ~Ll~ 1440 (1490)
T TIGR01271 1437 KLLN 1440 (1490)
T ss_pred HHHc
Confidence 8763
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=332.58 Aligned_cols=203 Identities=21% Similarity=0.303 Sum_probs=170.5
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...+.++||++.|. ++.+|+|+||.|.+|+++||+|||||||||||++|+|+++|++ |+|.+++. .
T Consensus 310 ~~~l~~~~l~~~y~-----~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~~~~------~ 375 (638)
T PRK10636 310 NPLLKMEKVSAGYG-----DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVS---GEIGLAKG------I 375 (638)
T ss_pred CceEEEEeeEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCC------E
Confidence 34699999999984 3469999999999999999999999999999999999999875 99999742 3
Q ss_pred eEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 183 SYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 183 ~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.+||++|+. .+.+..|+.+++.. .. + ......+.++|+.+++. +..++.++ .|||||||||+||
T Consensus 376 ~igy~~Q~~~~~l~~~~~~~~~~~~---~~-~---~~~~~~~~~~L~~~~l~~~~~~~~~~------~LSgGekqRl~La 442 (638)
T PRK10636 376 KLGYFAQHQLEFLRADESPLQHLAR---LA-P---QELEQKLRDYLGGFGFQGDKVTEETR------RFSGGEKARLVLA 442 (638)
T ss_pred EEEEecCcchhhCCccchHHHHHHH---hC-c---hhhHHHHHHHHHHcCCChhHhcCchh------hCCHHHHHHHHHH
Confidence 589999974 35566677776531 11 1 12345688999999996 46676554 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACL 336 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~ 336 (513)
++|+.+|+||||||||+|||+.++..+.++|+++ .| |||+++|+. ..+..+||++++|++|+++ +.|+.++..
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999999987 34 899988876 6788999999999999997 788887754
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=332.10 Aligned_cols=205 Identities=21% Similarity=0.277 Sum_probs=170.0
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...+.++||++.|. .+.+|+|+||.|.+|++++|+|||||||||||++|+|+++|+. |+|.+ |.+ .
T Consensus 317 ~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~-~~~-----~ 382 (635)
T PRK11147 317 KIVFEMENVNYQID-----GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADS---GRIHC-GTK-----L 382 (635)
T ss_pred CceEEEeeeEEEEC-----CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEE-CCC-----c
Confidence 34699999999984 3469999999999999999999999999999999999999875 99998 432 2
Q ss_pred eEEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+||++|+. .+++.+||.|++.+.... ... ......+.++++.+++. +..++.++ .|||||||||+||+
T Consensus 383 ~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGekqRl~la~ 453 (635)
T PRK11147 383 EVAYFDQHRAELDPEKTVMDNLAEGKQE-VMV--NGRPRHVLGYLQDFLFHPKRAMTPVK------ALSGGERNRLLLAR 453 (635)
T ss_pred EEEEEeCcccccCCCCCHHHHHHhhccc-ccc--cchHHHHHHHHHhcCCCHHHHhChhh------hCCHHHHHHHHHHH
Confidence 589999975 688999999999764321 100 11234578889999995 56676554 99999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe-CCeEEEE-eChHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFF-GETLA 334 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~-G~~~~ 334 (513)
+|+.+|+||||||||+|||+.++..+.++|+++ +.|||+++|+. ..+..+||++++|+ +|+++.+ |+-++
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999999999999999999999999999876 45899988875 57889999999998 8998764 54443
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=270.19 Aligned_cols=144 Identities=28% Similarity=0.392 Sum_probs=130.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
++++|+++.|. ...+++++||.+++||+++|+||||||||||+++|+|+++|.. |+|.++|. ..++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTYG-----GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE---GIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEEC-----CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCe------EEEE
Confidence 46889999884 2369999999999999999999999999999999999999875 99999985 3588
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
|++| ||+||+||++|||||+.+
T Consensus 67 ~~~~----------------------------------------------------------lS~G~~~rv~laral~~~ 88 (144)
T cd03221 67 YFEQ----------------------------------------------------------LSGGEKMRLALAKLLLEN 88 (144)
T ss_pred EEcc----------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 8888 899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
|+++||||||+|||+.++..+.+.|+++ +.|+|+++|+. +++..+||++++|++|+
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999987 46899988876 57888999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=329.06 Aligned_cols=204 Identities=23% Similarity=0.351 Sum_probs=166.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++||++.|.+ .+.+|+|+||.|.+|++++|+|||||||||||++|+|+++|+. |+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~~----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~---G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS---GTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeCC----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---ceEEECCc------ee
Confidence 46999999999842 2359999999999999999999999999999999999999875 99998752 35
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
++|++|+. +..+++.++..+......+. ...+.+.++++.+++.+ ..++. +..|||||||||+|||+|
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~~---~~~~~i~~~L~~~gl~~~~~~~~------~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNLALQP------MYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcCC---CCHHHHHHHHHHCCCChHHhcCC------ccccCHHHHHHHHHHHHH
Confidence 89999975 34456666643321111111 12356788999999974 55654 459999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLAC 335 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~ 335 (513)
+.+|+||||||||+|||+.++..+++.|++. .| |||+++|+. ..+..+||++++|++|+++ +.|+.++.
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999998888765 34 899988876 5788999999999999998 67876654
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=279.01 Aligned_cols=216 Identities=20% Similarity=0.278 Sum_probs=177.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
+.+.|+.+.|..+....+++|+++|+++..|+++.|+|.||||||||+++|+|.+++++ |+|.++|.++...
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~---G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS---GQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC---ceEEECceecccCCHHHH
Confidence 45677777776554456789999999999999999999999999999999999999986 9999999886432
Q ss_pred CceEEEEcCCc--ccCCCCCHHHHHHHHHHhcC----CCc-hhhHHHHHHHHHHHcC--ChhHHhhhhcCCCCCCCCCHH
Q 010314 181 YGSYGFVERET--TLIGSLTVREYLYYSALLQL----PGF-FCQRKNVVEDAIHAMS--LSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 181 ~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~----~~~-~~~~~~~v~~~l~~~~--L~~~~~~~vg~~~~~~~LSGG 251 (513)
...++-|+|++ ..++.+|++||+..+..... ... ....++...+-+..++ |++..++.++ -||||
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig------lLSGG 152 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG------LLSGG 152 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh------hccch
Confidence 13467789986 67899999999988754311 110 1223344455566654 5677777776 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||-|+++.|-++.|+||+|||-|++|||.++..|+++-.++.++ +.|.+++||+. .++..+-+|.++|++|+||.+-
T Consensus 153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999999999999999999999999999999754 78999988886 5889999999999999999864
Q ss_pred C
Q 010314 331 E 331 (513)
Q Consensus 331 ~ 331 (513)
.
T Consensus 232 ~ 232 (263)
T COG1101 232 T 232 (263)
T ss_pred c
Confidence 3
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=329.66 Aligned_cols=201 Identities=18% Similarity=0.255 Sum_probs=163.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++|+++.|++ ++.+|+|+|+++++||+++|+||||||||||+++|+|++++++ |+|.+++ ++.
T Consensus 450 ~~i~~~nv~~~~~~----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~---G~i~~~~------~~~ 516 (659)
T TIGR00954 450 NGIKFENIPLVTPN----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYG---GRLTKPA------KGK 516 (659)
T ss_pred CeEEEEeeEEECCC----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEeecC------CCc
Confidence 35899999998852 3469999999999999999999999999999999999998875 9998864 346
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhc---CCCCCCCCCHHHHHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG---GHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg---~~~~~~~LSGGqrqRv~IAr 260 (513)
++|++|++.+++. |++||+.++............++.+.++++.+++.+..++..| -...+..||||||||++|||
T Consensus 517 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR 595 (659)
T TIGR00954 517 LFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR 595 (659)
T ss_pred EEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence 9999999998877 9999997753211000001224567889999999887766321 01134689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
||+.+|++|||||||+|||+.++..+.+.+++ .|+|+|+++|+.. ..+.||++++|+.
T Consensus 596 al~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 596 LFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 99999999999999999999999999998876 3889999999874 3578999999963
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=324.45 Aligned_cols=204 Identities=20% Similarity=0.320 Sum_probs=162.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
|.++||+++|. .+.+|+||||.|.+|+++||+||||||||||||+|+|+++|++ |+|.++|. ..++
T Consensus 2 i~i~nls~~~g-----~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~---G~I~~~~~------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRG-----VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG---GSYTFPGN------WQLA 67 (638)
T ss_pred EEEEEEEEEeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEEE
Confidence 78999999994 4579999999999999999999999999999999999998875 99999874 2478
Q ss_pred EEcCCcccCCCCCHHHHHHHHH-----------------------Hhc--CC-CchhhHHHHHHHHHHHcCCh-hHHhhh
Q 010314 186 FVERETTLIGSLTVREYLYYSA-----------------------LLQ--LP-GFFCQRKNVVEDAIHAMSLS-DYANKL 238 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~-----------------------~~~--~~-~~~~~~~~~v~~~l~~~~L~-~~~~~~ 238 (513)
|++|+...+ ..|+.+.+.-.. .+. .. ........++.++++.+|+. +..++.
T Consensus 68 ~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 888864333 245555442110 000 00 00012245688899999996 566775
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEE
Q 010314 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 239 vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (513)
++ .|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+++|+. ..+..+||++
T Consensus 147 ~~------~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i 216 (638)
T PRK10636 147 VS------DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKI 216 (638)
T ss_pred hh------hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEE
Confidence 54 99999999999999999999999999999999999999999998875 46899988876 5788999999
Q ss_pred EEEeCCeEE-EEeChHH
Q 010314 319 CLLSNGNTL-FFGETLA 334 (513)
Q Consensus 319 ~vL~~G~iv-~~G~~~~ 334 (513)
++|++|+++ +.|+.+.
T Consensus 217 ~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 217 IHIEQQSLFEYTGNYSS 233 (638)
T ss_pred EEEeCCEEEEecCCHHH
Confidence 999999996 5676554
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=277.39 Aligned_cols=219 Identities=20% Similarity=0.238 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEecc-------------------ccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 010314 105 SVVWKDLTVTIKGK-------------------RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165 (513)
Q Consensus 105 ~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~ 165 (513)
.+.++||++.|.-. +.....+|+||||++++||.+||+|+||||||||||+|+|.++|++
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~- 81 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS- 81 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-
Confidence 57788888777521 1123479999999999999999999999999999999999999985
Q ss_pred ceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC
Q 010314 166 MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (513)
Q Consensus 166 ~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~ 245 (513)
|+|.++|+-... ..-...+.|.+|.+||+.+-+.+. .-...+.+++++++++..+|.++.+.++.
T Consensus 82 --G~v~v~G~v~~l-------i~lg~Gf~pelTGreNi~l~~~~~-G~~~~ei~~~~~eIieFaELG~fi~~Pvk----- 146 (249)
T COG1134 82 --GKVKVTGKVAPL-------IELGAGFDPELTGRENIYLRGLIL-GLTRKEIDEKVDEIIEFAELGDFIDQPVK----- 146 (249)
T ss_pred --ceEEEcceEehh-------hhcccCCCcccchHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHHHhhCchh-----
Confidence 999999974211 111234668899999998765442 12235678889999999999999998665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
.+|.||+-|++.|.|...+|+|||+||-.+-.|+.-++.-.+.+.++.+++.|||+++|++ ..+.++||++++|++|+
T Consensus 147 -tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 147 -TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQ 224 (249)
T ss_pred -hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCCE
Confidence 9999999999999999999999999999999999999999999999988889999988887 58999999999999999
Q ss_pred EEEEeChHHHHHHhHh
Q 010314 326 TLFFGETLACLQHFSN 341 (513)
Q Consensus 326 iv~~G~~~~~~~~f~~ 341 (513)
+.+.|+++++.+++..
T Consensus 225 i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 225 IRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEcCCHHHHHHHHHH
Confidence 9999999999887654
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=276.21 Aligned_cols=157 Identities=19% Similarity=0.224 Sum_probs=129.9
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
.+.+|+|+||++++|++++|+|||||||||||++|.+ . +|+|.++|.........++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcccccccccEEEEhH------------
Confidence 3468999999999999999999999999999999964 2 49999988632222234677765
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR--PHVLFIDEPLYHL 278 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~--P~iLllDEPTsgL 278 (513)
.++++.++|... .++ .+..||||||||++|||||+.+ |++|||||||+||
T Consensus 68 ---------------------~~~l~~~~L~~~~~~~------~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 ---------------------LQFLIDVGLGYLTLGQ------KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred ---------------------HHHHHHcCCCccccCC------CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 235677787643 444 3459999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 279 D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|+.++..+.+.|+++++.|+|||+++|++. .+ ..||++++|.+|+.
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCC
Confidence 999999999999999877999999998874 44 67999999966443
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=274.64 Aligned_cols=153 Identities=23% Similarity=0.255 Sum_probs=132.9
Q ss_pred EeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEc
Q 010314 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE 188 (513)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~ 188 (513)
.||++.|. .+.+++++ +.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|.. ++|++
T Consensus 4 ~~l~~~~~-----~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRYG-----VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG---DNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEEC-----CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---cEEEECCEE-------EEEEc
Confidence 57888883 34688884 8999999999999999999999999999999975 999999853 67887
Q ss_pred CCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 010314 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (513)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~i 268 (513)
|+.. ||||||||++|||+|+.+|++
T Consensus 68 q~~~-------------------------------------------------------LSgGq~qrv~laral~~~p~l 92 (177)
T cd03222 68 QYID-------------------------------------------------------LSGGELQRVAIAAALLRNATF 92 (177)
T ss_pred ccCC-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 7432 899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE--eChH
Q 010314 269 LFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFF--GETL 333 (513)
Q Consensus 269 LllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~--G~~~ 333 (513)
++|||||+|||+.++..+.+.|+++++++ .|||+++|+. ..+..+||++++|+++-.++. |.|.
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 99999999999999999999999998764 8999988886 578889999999998766543 5544
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=350.37 Aligned_cols=209 Identities=24% Similarity=0.304 Sum_probs=173.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++|+++.|+.. ..+.+|+|+|+++++|+.++|+||||||||||+++|+|.++|.. |.+.. .++.+
T Consensus 614 ~I~~~~vsF~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~---G~i~~-------~~~~I 681 (1495)
T PLN03232 614 AISIKNGYFSWDSK--TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE---TSSVV-------IRGSV 681 (1495)
T ss_pred cEEEEeeEEEcCCC--CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccC---CCEEE-------ecCcE
Confidence 68999999999632 23469999999999999999999999999999999999999864 65531 13469
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHHHHHHHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRRVRIA 259 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqrqRv~IA 259 (513)
+||+|++.+|. .||+|||.|+. + ..+++++++++..+|.+..+.+++|+.. ...||||||||++||
T Consensus 682 ayv~Q~p~Lf~-gTIreNI~fg~----~----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 682 AYVPQVSWIFN-ATVRENILFGS----D----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred EEEcCcccccc-ccHHHHhhcCC----c----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence 99999999996 59999998752 1 1245688889999998766666655433 346999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||..+|+|+|||||||+||+.++..+++. ++.+ .+++|+|+++|+.. ....||+|++|++|++++.|+.+++..
T Consensus 753 RAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999999988765 4443 36789999999973 467799999999999999999888753
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=349.87 Aligned_cols=208 Identities=24% Similarity=0.331 Sum_probs=175.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEeCCCCCce
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY-GEVFVNGAKSEMPYGS 183 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~-G~I~i~G~~~~~~~~~ 183 (513)
.++++|+++.|+.. ..+.+|+|+|+.+++|++++|+||||||||||+++|+|.+++. + |+|.+. +.
T Consensus 614 ~I~~~nvsf~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~ 680 (1622)
T PLN03130 614 AISIKNGYFSWDSK--AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GT 680 (1622)
T ss_pred ceEEEeeEEEccCC--CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------Ce
Confidence 58999999999632 2346999999999999999999999999999999999999885 6 899864 35
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRRVRI 258 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqrqRv~I 258 (513)
++||+|++.+|. .||+|||.|+. + ..+++++++++..+|.+..+.++.|+.. ...|||||||||+|
T Consensus 681 Iayv~Q~p~Lfn-gTIreNI~fg~----~----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaL 751 (1622)
T PLN03130 681 VAYVPQVSWIFN-ATVRDNILFGS----P----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSM 751 (1622)
T ss_pred EEEEcCccccCC-CCHHHHHhCCC----c----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHH
Confidence 899999999996 59999998752 1 1246688899999998777666554433 34699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||..+|+|+|||||||+||+.+.+.+++ .++.+. .++|+|+++|+. .....||+|++|++|++++.|+.+++..
T Consensus 752 ARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999999998865 555543 589999999997 3567899999999999999999888753
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=320.88 Aligned_cols=205 Identities=20% Similarity=0.260 Sum_probs=160.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.|.++||+++|. .+.+|+||||.|.+|+++||+|||||||||||++|+|+++|++ |+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~~-----~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~---G~I~~~~~------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSFS-----DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD---GRIIYEQD------LIV 68 (635)
T ss_pred EEEEeeEEEEeC-----CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEeCCC------CEE
Confidence 589999999994 3569999999999999999999999999999999999999875 99999863 135
Q ss_pred EEEcCCcccCCCCCHHHHHHHH------------------------------HHhc--CCC-chhhHHHHHHHHHHHcCC
Q 010314 185 GFVERETTLIGSLTVREYLYYS------------------------------ALLQ--LPG-FFCQRKNVVEDAIHAMSL 231 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~------------------------------~~~~--~~~-~~~~~~~~v~~~l~~~~L 231 (513)
+|++|.+......+|.+++..+ ..+. ... .......++.++++.+|+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 7777754333334555543210 0000 000 001224567889999998
Q ss_pred hhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHH
Q 010314 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311 (513)
Q Consensus 232 ~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i 311 (513)
.. ++. +..|||||||||+|||+|+.+|+||||||||+|||+.++..+.++|+++. .|||+++|+. ..+
T Consensus 149 ~~--~~~------~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l 216 (635)
T PRK11147 149 DP--DAA------LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFI 216 (635)
T ss_pred CC--CCc------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHH
Confidence 62 443 45999999999999999999999999999999999999999999999873 4888888776 578
Q ss_pred HhcCCEEEEEeCCeEEE-EeChHHH
Q 010314 312 FGLFDRICLLSNGNTLF-FGETLAC 335 (513)
Q Consensus 312 ~~~~D~v~vL~~G~iv~-~G~~~~~ 335 (513)
..+||+|++|++|+++. .|+.++.
T Consensus 217 ~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 217 RNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HHhcCeEEEEECCEEEEecCCHHHH
Confidence 89999999999999974 5776543
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=337.07 Aligned_cols=223 Identities=22% Similarity=0.338 Sum_probs=198.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..+..+++++.|.... .+++++|+.|++||+.|++|+|||||||++++|.|..+|++ |+++++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~~----~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~---G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD----GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTS---GEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecchh----hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCc---ceEEEecCccccccch
Confidence 4689999999985321 19999999999999999999999999999999999999985 999999976532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.++.+|||||.+.+++.+|.+|++.+.++++.-.. .+..+.++.+++.++|.+.+++.++ .+|||+|+|++
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~-~di~~~v~~ll~~~~L~~~~~~~~~------~ySgG~kRkLs 708 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPR-SDIGSAIEKLLRLVGLGPYANKQVR------TYSGGNKRRLS 708 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHcCChhhhccchh------hCCCcchhhHH
Confidence 24569999999999999999999999888764221 2455669999999999999999776 99999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+|.||+.+|++++|||||+|+||.+++.+++++++++++|+.||+|+|.. +++..+|||+.+|.+|++.-.|+++++..
T Consensus 709 ~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 99999999999999999999999999999999999998888999977765 79999999999999999999999999887
Q ss_pred HhHh
Q 010314 338 HFSN 341 (513)
Q Consensus 338 ~f~~ 341 (513)
+|-.
T Consensus 788 rfG~ 791 (885)
T KOG0059|consen 788 RYGS 791 (885)
T ss_pred hcCC
Confidence 6654
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=266.90 Aligned_cols=216 Identities=24% Similarity=0.322 Sum_probs=170.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---CC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SE-- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~---~~-- 178 (513)
+.+.+.++++.|. ..+-.+||||.+.|||+++|+|+|||||||||+||++.+.|+. |+|.+.-.. ..
T Consensus 5 PLL~V~~lsk~Yg-----~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~---G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 5 PLLSVSGLSKLYG-----PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA---GTVTYRMRDGQPRDLY 76 (258)
T ss_pred cceeehhhhhhhC-----CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCC---CeEEEEcCCCCchhHh
Confidence 4688999999884 3457899999999999999999999999999999999999986 999886432 11
Q ss_pred ---C------CCceEEEEcCCcc--cCCCCC----HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC
Q 010314 179 ---M------PYGSYGFVERETT--LIGSLT----VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243 (513)
Q Consensus 179 ---~------~~~~~~yv~Q~~~--l~~~lT----V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~ 243 (513)
. .+...|||.|++. +-...+ +.|-++-.. .......++...++|+.++++..+ . ++
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G----~RHYG~iR~~a~~WL~~VEI~~~R--i---DD 147 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG----ARHYGNIRAEAQDWLEEVEIDLDR--I---DD 147 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhh----hhhhhhHHHHHHHHHHhcccCccc--c---cC
Confidence 0 0124699999863 322223 334332111 111124556678899999886422 1 34
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.|+.+||||+||+.|||-|++.|+++||||||.|||...+..++++++.|..+ |.++|+++|+. ..+.-++||.++|+
T Consensus 148 ~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeec
Confidence 67899999999999999999999999999999999999999999999999854 99999988876 56777899999999
Q ss_pred CCeEEEEeChHHHHH
Q 010314 323 NGNTLFFGETLACLQ 337 (513)
Q Consensus 323 ~G~iv~~G~~~~~~~ 337 (513)
+|++++.|-++.+++
T Consensus 227 ~g~vve~GLTDrvLD 241 (258)
T COG4107 227 QGQVVESGLTDRVLD 241 (258)
T ss_pred CCCEecccccccccc
Confidence 999999998877654
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=302.82 Aligned_cols=216 Identities=24% Similarity=0.343 Sum_probs=175.1
Q ss_pred CCceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--
Q 010314 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-- 179 (513)
.+..++|+|++|.|. .++++|+||||++.||+.+||+||||+||||+|++|..+.... +|.|.++|+++..
T Consensus 534 ~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVT 606 (790)
T ss_pred cCCeEEEEEeEEecC----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHH
Confidence 345799999999996 4678999999999999999999999999999999999998765 4999999988532
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHH-------cCChhHHhhhhcCCCCCCCCC
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA-------MSLSDYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~-------~~L~~~~~~~vg~~~~~~~LS 249 (513)
.+..||.||||..+|.+ |+..|+.|+. +. ...+.|.++.+. ++..+-.++.+| +..-.||
T Consensus 607 ~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~~---AsneevyaAAkAA~IHdrIl~fPegY~t~VG--ERGLkLS 676 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFND-TILYNIRYAK----PS---ASNEEVYAAAKAAQIHDRILQFPEGYNTRVG--ERGLKLS 676 (790)
T ss_pred HHHHHHhcCcccCcceeecc-eeeeheeecC----CC---CChHHHHHHHHHhhHHHHHhcCchhhhhhhh--hcccccC
Confidence 23579999999999965 9999997752 22 112233333333 344444556665 2334699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
|||||||+|||+++.+|.|++|||.||+||..+.+.|-..|.+++.. +|.|++.|..+. .-.+|.|+++++|+|++.
T Consensus 677 GGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~-RTtIVvAHRLST--ivnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 677 GGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCAN-RTTIVVAHRLST--IVNADLILVISNGRIVER 753 (790)
T ss_pred CcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcC-CceEEEeeeehh--eecccEEEEEeCCeEeec
Confidence 99999999999999999999999999999999999999999999864 455555888753 345999999999999999
Q ss_pred eChHHHHH
Q 010314 330 GETLACLQ 337 (513)
Q Consensus 330 G~~~~~~~ 337 (513)
|.-+|++.
T Consensus 754 G~HeeLl~ 761 (790)
T KOG0056|consen 754 GRHEELLK 761 (790)
T ss_pred CcHHHHHh
Confidence 99888764
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=259.38 Aligned_cols=191 Identities=23% Similarity=0.346 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.+.++|++... .+.-+|-+||++|.+||++-||||||||||||+..+.|.+.+.-..+|++++|++.... ..
T Consensus 2 ~l~l~nvsl~l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRL-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecC-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 47889998765 34568999999999999999999999999999999999998876679999999987543 35
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+++|.++|++.+||+++|.+||.|+.--.+.. ..+++.+..+|++.||.+..++- |..||||||-||++-|+
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG--~aRr~~a~aAL~~~gL~g~f~~d------P~tlSGGQrARvaL~R~ 148 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKG--NARRNAANAALERSGLDGAFHQD------PATLSGGQRARVALLRA 148 (213)
T ss_pred hheeeeecccccccccccccceEEecCccccc--HHHHhhHHHHHHHhccchhhhcC------hhhcCcchHHHHHHHHH
Confidence 78999999999999999999998764322222 35667789999999999988874 45999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCeEEEEEeCCh
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTINQSS 308 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~t~h~~~ 308 (513)
|+..|+.++||||+|.||..-+.++.+.+-. ++..|..+|.++|+..
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 9999999999999999999999999988754 4556988888888863
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=343.14 Aligned_cols=208 Identities=20% Similarity=0.259 Sum_probs=171.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++|+++.|++. .+.+|+|+|+.+++|++++|+||||||||||+++|+|+++|.. |+|.++| .+
T Consensus 636 ~i~~~~~~~~~~~~---~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g--------~i 701 (1522)
T TIGR00957 636 SITVHNATFTWARD---LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE---GHVHMKG--------SV 701 (1522)
T ss_pred cEEEEEeEEEcCCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC---cEEEECC--------EE
Confidence 69999999998531 2469999999999999999999999999999999999999875 9999987 48
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrqRv~IA 259 (513)
+||+|++.++ +.||+||+.++.. . ..++.+++++..++.+..+....|+ ..+..||||||||++||
T Consensus 702 ~yv~Q~~~l~-~~Ti~eNI~~g~~----~----~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 702 AYVPQQAWIQ-NDSLRENILFGKA----L----NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 772 (1522)
T ss_pred EEEcCCcccc-CCcHHHHhhcCCc----c----CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHH
Confidence 9999999887 4699999987421 1 1233455666666655444433222 34578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA--STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~--~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||+.+|+|+|||||||+||+.++..+++.+.+.. .+++|+|+++|+.. .+ ..||+|++|++|++++.|+.+++..
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~-~l-~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS-YL-PQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh-hh-hhCCEEEEecCCeEEeeCCHHHHHh
Confidence 99999999999999999999999999999997542 35789999999874 44 5599999999999999999888753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=314.88 Aligned_cols=189 Identities=22% Similarity=0.247 Sum_probs=155.3
Q ss_pred eEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC
Q 010314 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE 178 (513)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~ 178 (513)
++++.|. ....+|++++ .+++|+++||+||||||||||+|+|+|+++|+. |+|. ++|.+..
T Consensus 78 ~~~~~yg----~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 78 EPVHRYG----VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL---GDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred CceEEec----CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC---ccccCCCcHHHHHHHhCChHHH
Confidence 3666663 1235899999 899999999999999999999999999999975 9997 8887532
Q ss_pred C-------CCceEEEEcCCcccCCC---CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCC
Q 010314 179 M-------PYGSYGFVERETTLIGS---LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (513)
Q Consensus 179 ~-------~~~~~~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~L 248 (513)
. ....+++.+|....+|. .||.|++... +..+.++++++.++|.+..++.++ +|
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~------~L 213 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV----------DERGKLDEVVERLGLENILDRDIS------EL 213 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh----------hHHHHHHHHHHHcCCchhhcCChh------hC
Confidence 1 11234555554333332 3999998531 223568899999999988888665 99
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
||||||||+||++|+.+|+||||||||++||+.++..+.+.|+++++ |.|||+++|+. ..+..+||+|++|+++
T Consensus 214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999988 99999988886 5788999999999864
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=259.02 Aligned_cols=151 Identities=32% Similarity=0.522 Sum_probs=132.7
Q ss_pred EEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----Cc
Q 010314 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YG 182 (513)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~ 182 (513)
++|+++.|.+ +.+++++|+.+.+|++++|+|+||||||||+++|+|++++.. |+|.++|.+.... .+
T Consensus 2 ~~~~~~~~~~-----~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~---G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYGG-----RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeCC-----eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccCCHHHHHh
Confidence 6788888842 369999999999999999999999999999999999998874 9999999764321 13
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++| |||||+||++||++|
T Consensus 74 ~i~~~~q----------------------------------------------------------lS~G~~~r~~l~~~l 95 (157)
T cd00267 74 RIGYVPQ----------------------------------------------------------LSGGQRQRVALARAL 95 (157)
T ss_pred ceEEEee----------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 4566655 899999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+.+|++++|||||+|||..++..+.+.|+++.+.++|+|+++|+. ..+..+||++++|++|+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999987678999988886 57888899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=334.45 Aligned_cols=203 Identities=22% Similarity=0.313 Sum_probs=164.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++|+++. .+.+|+|+|+.+++|++++|+|||||||||||++|+|+++|.. |+|.++| .+
T Consensus 428 ~~~~~~~s~~-------~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~---G~i~~~g--------~i 489 (1490)
T TIGR01271 428 GLFFSNFSLY-------VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSG--------RI 489 (1490)
T ss_pred cccccccccc-------cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC--------EE
Confidence 3556666543 2359999999999999999999999999999999999999875 9999987 38
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrqRv~IA 259 (513)
+||+|++.+++. ||+||+.|+... . ..+.+++++..+|.+..+....|+ ..+..|||||||||+||
T Consensus 490 ayv~Q~~~l~~~-Ti~eNI~~g~~~----~----~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lA 560 (1490)
T TIGR01271 490 SFSPQTSWIMPG-TIKDNIIFGLSY----D----EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLA 560 (1490)
T ss_pred EEEeCCCccCCc-cHHHHHHhcccc----c----hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHH
Confidence 999999999875 999999875311 1 122444555556655444333222 23568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||+.+|+|+||||||+|||+.++..+++. ++.+. +|+|+|+++|++. .+ ..||+|++|++|+++..|+.+++..
T Consensus 561 RAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 561 RAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999985 56664 4899999999974 44 5699999999999999999888753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=260.27 Aligned_cols=186 Identities=24% Similarity=0.319 Sum_probs=160.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---- 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~---- 181 (513)
++.+||+..- ..+.++.++||++.+||++-|.||||||||||||+|+|+.+|++ |+|.++|.++....
T Consensus 3 L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~---G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 3 LEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESYH 74 (209)
T ss_pred chhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCC---CeEEecCCCCccchhhHH
Confidence 4566776543 45689999999999999999999999999999999999999986 99999997754322
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.+-|+-..+.+=+.+||.|||.|-..+... .....+.++++.+||.++.|..++ .||-||||||+|||-
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~----~~~~~i~~Al~~vgL~g~~dlp~~------~LSAGQqRRvAlArL 144 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAGLEDLPVG------QLSAGQQRRVALARL 144 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCC----CchhhHHHHHHHcCcccccccchh------hcchhHHHHHHHHHH
Confidence 3466787888888999999999886544322 123568899999999999988776 999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (513)
++..+++.|||||+++||......+-.++..-+.+|..||.++||+..
T Consensus 145 ~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 145 WLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999888889999999999864
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=287.04 Aligned_cols=217 Identities=24% Similarity=0.322 Sum_probs=176.6
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...+.|.+++|.|. ..+++|+++||.+++|+.+||+||||+||||++++|..++.+++ |.|.++|+++..
T Consensus 260 ~g~v~F~~V~F~y~----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s---G~I~id~qdir~vtq 332 (497)
T COG5265 260 LGAVAFINVSFAYD----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS---GSITIDGQDIRDVTQ 332 (497)
T ss_pred cceEEEEEEEeecc----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC---ceEEEcchhHHHhHH
Confidence 34689999999996 45679999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGE 252 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGq 252 (513)
.++.||.|||+..||.. |...|+.|+. +. ...+.+..+.+...+.++....+.|.+. .-.|||||
T Consensus 333 ~slR~aIg~VPQDtvLFND-ti~yni~ygr----~~---at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSgge 404 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFND-TIAYNIKYGR----PD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGE 404 (497)
T ss_pred HHHHHHhCcCcccceehhh-hHHHHHhccC----cc---ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCch
Confidence 23569999999999954 8999997642 21 2233455555665555554444333222 23499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||||+|||+++.+|+||+|||.||+||..+.+++...|+++. .|+|.+++.|..+. + --+|+|++|++|+|++.|.-
T Consensus 405 kqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcH
Confidence 999999999999999999999999999999999999999987 56777777888753 3 35899999999999999998
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
.+++.
T Consensus 482 ~~ll~ 486 (497)
T COG5265 482 EELLA 486 (497)
T ss_pred HHHHH
Confidence 88765
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=294.67 Aligned_cols=201 Identities=25% Similarity=0.328 Sum_probs=166.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.+.++|+++.| +.+.+++++|+.+.+|+.+||||+||||||||||+|+|...|+. |+|...+. -.+
T Consensus 3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~---G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS---GEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCC---CeEeecCC------ceE
Confidence 68999999999 35689999999999999999999999999999999999998875 99987642 358
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHh--c-----------CCCc----------------hhhHHHHHHHHHHHcCChhHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALL--Q-----------LPGF----------------FCQRKNVVEDAIHAMSLSDYA 235 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~--~-----------~~~~----------------~~~~~~~v~~~l~~~~L~~~~ 235 (513)
+|+.|++.+.+..||.+.+.-+..- . ++.. ....+.++..++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 9999999999999999988554210 0 0000 00123456777888888766
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcC
Q 010314 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (513)
Q Consensus 236 ~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (513)
++.++ +||||||.||+||++|+.+|+||||||||++||..+..-+-+.|++. .| |+|+++|+ ...+-+.|
T Consensus 148 ~~~~~------~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~ 217 (530)
T COG0488 148 DRPVS------SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVA 217 (530)
T ss_pred cCchh------hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHh
Confidence 66555 99999999999999999999999999999999999999999999864 46 88887776 57889999
Q ss_pred CEEEEEeCCeEEEEe
Q 010314 316 DRICLLSNGNTLFFG 330 (513)
Q Consensus 316 D~v~vL~~G~iv~~G 330 (513)
++|+-++.|++..++
T Consensus 218 t~I~~ld~g~l~~y~ 232 (530)
T COG0488 218 THILELDRGKLTPYK 232 (530)
T ss_pred hheEEecCCceeEec
Confidence 999999999886553
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=325.10 Aligned_cols=194 Identities=24% Similarity=0.329 Sum_probs=153.5
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
.+.+|+|+|+.+++|++++|+|||||||||||++|+|+++|+. |+|.+. +.++|++|++.++ ..||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~---G~i~~~--------~~i~yv~Q~~~l~-~~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE---GRVWAE--------RSIAYVPQQAWIM-NATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEEC--------CeEEEEeCCCccC-CCcHHH
Confidence 3569999999999999999999999999999999999999875 999874 3599999999887 469999
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
|+.+... ...++++++++..+|.+..+....| ...+..|||||||||+|||||+.+|+||||||||+
T Consensus 740 nI~~~~~--------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~s 811 (1560)
T PTZ00243 740 NILFFDE--------EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLS 811 (1560)
T ss_pred HHHcCCh--------hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 9987421 1112234444444444333222111 12456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+||+.++..+++.+......|+|+|+++|++. . ...||+|++|++|++++.|+.+++..
T Consensus 812 aLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~-~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 812 ALDAHVGERVVEECFLGALAGKTRVLATHQVH-V-VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH-H-HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999988754322235899999999873 4 46799999999999999999888653
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=263.63 Aligned_cols=189 Identities=21% Similarity=0.218 Sum_probs=133.4
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--EeCC---CCCceE
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL-RAIAGRLPHSARMYGEVFVN-----------G--AKSE---MPYGSY 184 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl-~~L~G~~~~~~~~~G~I~i~-----------G--~~~~---~~~~~~ 184 (513)
...+|++|||++++||+++|+|+||||||||+ ..|... |++.+. | ...+ ......
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAE--------GQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHH--------HHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 34699999999999999999999999999995 444321 221110 0 0000 001122
Q ss_pred EEEcCCc--ccCCCCCHHH---HHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 185 GFVERET--TLIGSLTVRE---YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 185 ~yv~Q~~--~l~~~lTV~E---~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+..|++ .+.|..+|.. ...+...+. .. .....+ .+.++.++|.+ ..++ ++.+|||||||||+|
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~--~~~~~~-~~~l~~~~l~~~~~~~------~~~~LSgG~~qrv~l 148 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-AR--VGIRER-LGFLVDVGLGYLTLSR------SAPTLSGGEAQRIRL 148 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-hh--hhHHHH-HHHHHHCCCCcccccC------ccCcCCHHHHHHHHH
Confidence 3333332 3345556543 222211111 11 112223 56899999975 3555 456999999999999
Q ss_pred HHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEe
Q 010314 259 ARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFG 330 (513)
Q Consensus 259 AraL~~~P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G 330 (513)
||+|+.+| ++|||||||+|||+.++..+++.|++++++|.|+|+++|++. .+ .+||++++| ++|+++++|
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999998 599999999999999999999999999878999999999874 55 689999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=305.90 Aligned_cols=213 Identities=16% Similarity=0.156 Sum_probs=150.4
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCEeCCC
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL---PHSARMYGEVFVNGAKSEM 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~---~~~~~~~G~I~i~G~~~~~ 179 (513)
...|.++|++++|. ++.+|+|+||+|.+|+++||+|+|||||||||++|+|+. .|. .|+|.+.++....
T Consensus 175 ~~~I~i~nls~~y~-----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~---~g~I~~~~Q~~~g 246 (718)
T PLN03073 175 IKDIHMENFSISVG-----GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPK---NCQILHVEQEVVG 246 (718)
T ss_pred ceeEEEceEEEEeC-----CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCC---CCEEEEEeccCCC
Confidence 34699999999994 346999999999999999999999999999999999964 222 3777654322100
Q ss_pred C-------------------CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc-----------------hhhHHHHHH
Q 010314 180 P-------------------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-----------------FCQRKNVVE 223 (513)
Q Consensus 180 ~-------------------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~-----------------~~~~~~~v~ 223 (513)
. ...++|++|++.+... ++.++.........+.. ......++.
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 0 0113344443221110 11111000000000000 012334567
Q ss_pred HHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE
Q 010314 224 DAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302 (513)
Q Consensus 224 ~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~ 302 (513)
+++..+|+. +..++.+ ..|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||+
T Consensus 326 ~~L~~lgl~~~~~~~~~------~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tvii 396 (718)
T PLN03073 326 SILAGLSFTPEMQVKAT------KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIV 396 (718)
T ss_pred HHHHHCCCChHHHhCch------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEE
Confidence 778888885 4455544 499999999999999999999999999999999999999999999886 679999
Q ss_pred EEeCChHHHHhcCCEEEEEeCCeEE-EEeChHH
Q 010314 303 TINQSSTEVFGLFDRICLLSNGNTL-FFGETLA 334 (513)
Q Consensus 303 t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~ 334 (513)
++|+. ..+..+||++++|++|+++ +.|+.+.
T Consensus 397 vsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 397 VSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 88875 6788999999999999996 5666543
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-31 Score=302.49 Aligned_cols=217 Identities=22% Similarity=0.307 Sum_probs=184.7
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...++|+|++++|.. +...+|+|||++|+|||-+||+|..|||||||+++|..+..|.+ |+|.|||.++..
T Consensus 1136 ~G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~---G~I~IDgvdI~~igL 1209 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRP---NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE---GEILIDGVDISKIGL 1209 (1381)
T ss_pred CCeEEEEEeEEEeCC---CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC---CeEEEcCeecccccH
Confidence 357999999999953 34579999999999999999999999999999999999998864 999999988643
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGE 252 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGq 252 (513)
.+++++.+||+|.+|.. |||.||.- - ..-.++.+-++|+..+|.++..++++|.+ ....+|-||
T Consensus 1210 ~dLRsrlsIIPQdPvLFsG-TvR~NLDP-------f-~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQ 1280 (1381)
T KOG0054|consen 1210 HDLRSRLSIIPQDPVLFSG-TVRFNLDP-------F-DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQ 1280 (1381)
T ss_pred HHHHhcCeeeCCCCceecC-ccccccCc-------c-cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHH
Confidence 24679999999999965 99999931 1 12245678999999999887766655432 225699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||.|++||||+++.+||+|||+|+++|+.+-..|-+.|++-= .++|||.+.|... .+. -||||+||++|+++++|+|
T Consensus 1281 RQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP 1357 (1381)
T KOG0054|consen 1281 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSP 1357 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCCh
Confidence 999999999999999999999999999999999999998843 4799999888875 344 3899999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
.+++.
T Consensus 1358 ~~Ll~ 1362 (1381)
T KOG0054|consen 1358 AELLS 1362 (1381)
T ss_pred HHHHh
Confidence 99875
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=240.41 Aligned_cols=210 Identities=20% Similarity=0.256 Sum_probs=169.7
Q ss_pred ceEEEEeEEEEEeccccc--cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe--CC-
Q 010314 104 ASVVWKDLTVTIKGKRRY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SE- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~--~~- 178 (513)
..|.++|++++|.-.... .-++|+++||.++.||+++|-||||+|||||||+|-|.+.|++ |+|++.-.. ++
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~---G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCC---ceEEEEeCcchhhh
Confidence 357889999888532222 2369999999999999999999999999999999999999985 999985421 11
Q ss_pred ----------CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCC
Q 010314 179 ----------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (513)
Q Consensus 179 ----------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~L 248 (513)
..++.+|||.|.-...|..+..|.+..++.-+. ...+..+.++..++.++++.+.+..+ .|..+
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~g-v~~~~a~~~a~~Ll~rLnlperLW~L-----aPaTF 153 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG-VPREVARAKAADLLTRLNLPERLWSL-----APATF 153 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCCHHHhcC-----CCccc
Confidence 123568999999888899888888877654332 12234567788999999998766554 46699
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
||||+|||.|||.++.+-+||+|||||+.||..++..++++|++-+..|..+|=+-|+ .+.-...|||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999999988889888886665 3344568999998853
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=298.00 Aligned_cols=211 Identities=23% Similarity=0.329 Sum_probs=181.1
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...++++|.+++.... .....|+|||+.+++|+++||+|+-|||||+||.+|.|.++.. +|+|.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs------- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE--SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS------- 583 (1381)
T ss_pred CceEEEeeeeEecCCC--CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe-------
Confidence 3568999999998642 2344999999999999999999999999999999999999875 599999985
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRRVR 257 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqrqRv~ 257 (513)
++||+|.+.++. .||+|||.|+.. -.+++.+++++...|.+..+-++.|+. ..-.||||||||++
T Consensus 584 -iaYv~Q~pWI~n-gTvreNILFG~~--------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIs 653 (1381)
T KOG0054|consen 584 -VAYVPQQPWIQN-GTVRENILFGSP--------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRIS 653 (1381)
T ss_pred -EEEeccccHhhC-CcHHHhhhcCcc--------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHH
Confidence 899999999985 599999988632 134667888999999877776665443 33569999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+|||+-.+.+|++||.|.|++|++....+++..-...-+++|+|++||+. +....||.|++|++|+++..|+.+|+..
T Consensus 654 LARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 654 LARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 99999999999999999999999999999887765445689999999975 5778899999999999999999999873
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=254.38 Aligned_cols=194 Identities=19% Similarity=0.227 Sum_probs=149.2
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHH--------cCC--CCC--CCcee------EEEECCEeCCCCC----
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA--------GRL--PHS--ARMYG------EVFVNGAKSEMPY---- 181 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~--------G~~--~~~--~~~~G------~I~i~G~~~~~~~---- 181 (513)
.-|+||+..|+.|.+++|.|+||||||||++.+. +.. .|. ..+.| -|.++..++....
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998662 110 011 01112 3556654431100
Q ss_pred ---------------------------ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-
Q 010314 182 ---------------------------GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD- 233 (513)
Q Consensus 182 ---------------------------~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~- 233 (513)
..+.|..++...+..+||.|++.|...+. ...++.++++.+||.+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~-------~~~~~~~~L~~vgL~~l 161 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP-------KIARKLQTLCDVGLGYI 161 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh-------hHHHHHHHHHHcCCchh
Confidence 01345556666667899999998764331 1245678999999987
Q ss_pred HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHH
Q 010314 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (513)
Q Consensus 234 ~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~---P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (513)
..++.+ ..|||||+||++||++|+.+ |+++||||||+|||+..+..+++.|+++.+.|.|||+++|++. .
T Consensus 162 ~l~~~~------~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-~ 234 (261)
T cd03271 162 KLGQPA------TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-V 234 (261)
T ss_pred hhcCcc------ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H
Confidence 355544 49999999999999999996 7999999999999999999999999999888999999998873 4
Q ss_pred HHhcCCEEEEE------eCCeEEEEeCh
Q 010314 311 VFGLFDRICLL------SNGNTLFFGET 332 (513)
Q Consensus 311 i~~~~D~v~vL------~~G~iv~~G~~ 332 (513)
+ ..||++++| ++|++++.|++
T Consensus 235 i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 235 I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 4 579999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=235.70 Aligned_cols=132 Identities=35% Similarity=0.597 Sum_probs=116.5
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCceEEEEcCCcccCCCCCHH
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVR 200 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~ 200 (513)
|+|||+.+++|++++|+|+||||||||+++|+|..++. +|+|.++|.+... ..+.++|++|++.+++.+||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999886 5999999988654 235799999999999999999
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
|| .....++++++.+++.+..++.++ ..+..|||||||||+||+||+.+|++|||||||+
T Consensus 78 ~~--------------~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN--------------ESDERIEEVLKKLGLEDLLDRKIG--QRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH--------------HHHHHHHHHHHHTTHGGGTGSBGT--SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc--------------cccccccccccccccccccccccc--cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 123458889999999888777763 2347999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=268.58 Aligned_cols=203 Identities=25% Similarity=0.317 Sum_probs=167.6
Q ss_pred CCceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 010314 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (513)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (513)
+...++++|+++.|.+ .+.+++++||.+.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~~----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~------ 384 (530)
T COG0488 318 GKLVLEFENVSKGYDG----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET------ 384 (530)
T ss_pred CCeeEEEeccccccCC----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc------
Confidence 4567999999999953 257999999999999999999999999999999999998886 499987532
Q ss_pred ceEEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 182 GSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 182 ~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
-.+||..|+. .+.+..|+.|++.-. .+. .....+...|..|++.. ...+.++ .||||||.||.+|
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~----~~~---~~e~~~r~~L~~f~F~~~~~~~~v~------~LSGGEk~Rl~La 451 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEG----FPD---GDEQEVRAYLGRFGFTGEDQEKPVG------VLSGGEKARLLLA 451 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhh----Ccc---ccHHHHHHHHHHcCCChHHHhCchh------hcCHhHHHHHHHH
Confidence 3589999985 555788999988532 111 11566889999999963 4556554 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE-eChHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF-GETLAC 335 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~-G~~~~~ 335 (513)
+.++.+|.||||||||++||..+...+.+.|... ..|||+++|+. ..+..+|++++++.+ ++..+ |..++.
T Consensus 452 ~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 9999999999999999999999999999998876 35888878875 689999999999998 65554 665543
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=242.80 Aligned_cols=165 Identities=19% Similarity=0.238 Sum_probs=128.8
Q ss_pred eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC------CceeEEEECCEeCCC--CCceEEEEcCCcccCCCCC
Q 010314 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA------RMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (513)
Q Consensus 127 ~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~------~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (513)
+++++.+.+| +++|+||||||||||+++|+|++++.. ...|++.+.|.+... ..+.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 999999999999999999999986541 123567777765322 235799999998766
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCC
Q 010314 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV----MRPHVLFIDEP 274 (513)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~----~~P~iLllDEP 274 (513)
|. . ...++++++++. .+..++. +..||||||||++||++|+ .+|+++|||||
T Consensus 89 ------~~----~-----~~~~~~~~~l~~---~~~~~~~------~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 ------YS----I-----ISQGDVSEIIEA---PGKKVQR------LSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred ------ee----E-----EehhhHHHHHhC---CCccccc------hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 11 0 012346666666 3344443 4599999999999999997 46699999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
|+|||+..+..+++.|+++++ +.|||+++|++. . ...||+++.|..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 999999999999999999865 688999888863 4 468999999964
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-29 Score=261.63 Aligned_cols=211 Identities=22% Similarity=0.330 Sum_probs=174.9
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-- 180 (513)
.+.++++|++.. ..++||||++++||+++|.|-=|||+|-|+++|.|..++. +|+|.++|++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCH
Confidence 456788888742 2588999999999999999999999999999999987776 49999999975432
Q ss_pred ----CceEEEEcCC---cccCCCCCHHHHHHHHHHhcCC----CchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCC
Q 010314 181 ----YGSYGFVERE---TTLIGSLTVREYLYYSALLQLP----GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (513)
Q Consensus 181 ----~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~L 248 (513)
...++||+.| ..++..++|.+|+.++...+.. -.....++.+++..+.+++. .-.+..+ ..|
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v------~~L 402 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI------GTL 402 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh------hcC
Confidence 2469999976 5789999999999887332211 11123455678888999885 2334444 499
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|||.+|+|.|||.|..+|+||||||||.|.|.-+..+|.++|++|+++|++||++++.. +|+..+||||+||++|+++.
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVG 481 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999987775 68999999999999999987
Q ss_pred EeCh
Q 010314 329 FGET 332 (513)
Q Consensus 329 ~G~~ 332 (513)
.-+.
T Consensus 482 e~~~ 485 (500)
T COG1129 482 ELDR 485 (500)
T ss_pred Eecc
Confidence 5433
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=242.78 Aligned_cols=184 Identities=17% Similarity=0.186 Sum_probs=127.4
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC----------------CCCCC---Ccee--EEEECCEeCC--
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR----------------LPHSA---RMYG--EVFVNGAKSE-- 178 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~----------------~~~~~---~~~G--~I~i~G~~~~-- 178 (513)
...++++++ |++++|+||||||||||+++|+++ +.++. ...+ +|.+++.+..
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 345777776 789999999999999999999844 23321 0112 5555553210
Q ss_pred ---C---CCceEEEEcCCcccCC-CCCHHHHHHHHHHhcCCCchh---hHHHHHHHHHHHcCChhHHhhhhcCCCCCCCC
Q 010314 179 ---M---PYGSYGFVERETTLIG-SLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (513)
Q Consensus 179 ---~---~~~~~~yv~Q~~~l~~-~lTV~E~l~~~~~~~~~~~~~---~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~L 248 (513)
. ..+.++|++|+..+++ ..|..|...+...+....... .... ++.+.+++.+..+. .+..|
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg---~i~~l~~l~~~~~~------~~~~l 159 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQG---KINSLTNMKQDEQQ------EMQQL 159 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcC---chHHhhhccccccc------ccccc
Confidence 0 1245889998888877 467777666554443322100 0112 23333445443444 34599
Q ss_pred CHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 249 PCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 249 SGGqrqRv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
|||||||++|||+|+. +|+++||||||+|||+.++..+++.|+++++ +.++|++ ||. .++..+||++++|.
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~-~h~-~~~~~~~d~i~~l~ 234 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITT-TFR-PELLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEE-ecC-HHHHhhCCEEEEEE
Confidence 9999999999999974 5899999999999999999999999999865 6677765 454 36789999999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-29 Score=226.99 Aligned_cols=206 Identities=25% Similarity=0.361 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.+.++|+...- -|-.+|+.+..||++-++|||||||||||-.++|+++.. |+|.++|.+.+.+
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s----Gsi~~~G~~l~~~~~~e 69 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS----GSIQFAGQPLEAWSATE 69 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCCC----ceEEECCcchhHHhHhH
Confidence 45677776542 477889999999999999999999999999999998753 9999999885432
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.+.-+|+.|+..-...|.|...|.+ ..|. .+....+.++...++|.+...+.+. +|||||=|||-+|
T Consensus 70 LArhRAYLsQqq~p~f~mpV~~YL~L----~qP~--~~~a~~i~~i~~~L~l~DKL~Rs~~------qLSGGEWQRVRLA 137 (248)
T COG4138 70 LARHRAYLSQQQTPPFAMPVWHYLTL----HQPD--KTRTELLNDVAGALALDDKLGRSTN------QLSGGEWQRVRLA 137 (248)
T ss_pred HHHHHHHHhhccCCcchhhhhhhhhh----cCch--HHHHHHHHHHHhhhcccchhhhhhh------hcCcccceeeEEe
Confidence 2445788877655556788888743 3343 3455678888999999888777654 9999999999999
Q ss_pred HHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 260 RELVM-----RP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 260 raL~~-----~P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
...+. || ++|++|||.++||...+..+-++|.+++..|.+||++.|+. ....+.+|++.+|+.|++...|..
T Consensus 138 av~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL-NhTLrhA~~~wLL~rG~l~~~G~~ 216 (248)
T COG4138 138 AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKRGKLLASGRR 216 (248)
T ss_pred EEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch-hhHHHHHHHHHHHhcCeEEeecch
Confidence 87764 44 69999999999999999999999999999999999988876 467889999999999999999999
Q ss_pred HHHH
Q 010314 333 LACL 336 (513)
Q Consensus 333 ~~~~ 336 (513)
++++
T Consensus 217 ~eVl 220 (248)
T COG4138 217 EEVL 220 (248)
T ss_pred hhhc
Confidence 9875
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=251.84 Aligned_cols=198 Identities=23% Similarity=0.334 Sum_probs=164.3
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...+.++||++.-++ +...|++.++.+++|+.+.|.||||||||||+|+|+|+.|..+ |+|.+- ...
T Consensus 390 ~~~i~~~nl~l~~p~----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~---G~I~~P------~~~ 456 (604)
T COG4178 390 DHGITLENLSLRTPD----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS---GRISMP------ADS 456 (604)
T ss_pred cceeEEeeeeEECCC----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC---CceecC------CCC
Confidence 367999999998764 3479999999999999999999999999999999999998764 877653 124
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.+-|+||.+.+... |.+|-|.|+.... .-.++.+.++|..+||.++.+++-.-.++-+.||+||||||++||.|
T Consensus 457 ~~lflpQ~PY~p~G-tLre~l~YP~~~~-----~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil 530 (604)
T COG4178 457 ALLFLPQRPYLPQG-TLREALCYPNAAP-----DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL 530 (604)
T ss_pred ceEEecCCCCCCCc-cHHHHHhCCCCCC-----CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH
Confidence 57899999987654 9999998753211 13456789999999999998887555567788999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
+++|++++|||.|++||+.++..++++|++-. .+.|||-+.|.+ .+..+.++.+-+.
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccch--hhHHHHhhheeec
Confidence 99999999999999999999999999998732 378888888876 4666777766553
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-29 Score=240.41 Aligned_cols=186 Identities=15% Similarity=0.173 Sum_probs=134.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-CCCce
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-MPYGS 183 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-~~~~~ 183 (513)
.++++|+. .| ..+.+++++++ ++++|+||||||||||+++|.-.. |.+.. ...+.
T Consensus 5 ~l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~-------------G~~~~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVF-------------GFRASKMRQKK 60 (212)
T ss_pred EEEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHh-------------ccCHHHhhhhh
Confidence 35666664 44 34568898887 899999999999999999998321 11111 11235
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcC------CC-chhhHHH--HHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQL------PG-FFCQRKN--VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~------~~-~~~~~~~--~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
+++++|+..+++.+|+.+++.+...... .. ....... ...++++.++|.+..++.+ ..||+||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~------~~lS~G~~~ 134 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI------SNLSGGEKT 134 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch------hhcCHHHHH
Confidence 7888888888888888887654322110 00 0001010 1255667778877666654 489999999
Q ss_pred HHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 255 RVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 255 Rv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
|++||++++. +|+++||||||+|||+.++..+.+.|+++++ +.|+|+++|++ ++.++||++++|..
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999974 4799999999999999999999999999864 56777777874 68899999999964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=237.79 Aligned_cols=175 Identities=18% Similarity=0.160 Sum_probs=135.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-eC-------CCCCceEEEEcCCc---------ccCCCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA-KS-------EMPYGSYGFVERET---------TLIGSLT 198 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~-~~-------~~~~~~~~yv~Q~~---------~l~~~lT 198 (513)
..+++|+||||||||||+++|++++.+.. .|++.+.|. +. ......+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~--~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITN--LSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccc--cccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 56999999999999999999999987642 267777665 21 11224688999984 3466789
Q ss_pred HHHHHHHHHHhc--CCCchhhHHHHHHHHHHHcCCh--------------------hHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 199 VREYLYYSALLQ--LPGFFCQRKNVVEDAIHAMSLS--------------------DYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 199 V~E~l~~~~~~~--~~~~~~~~~~~v~~~l~~~~L~--------------------~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
|.+++.+..... ... .....+.+.++|+.+++. +..+ .++.+||||||||+
T Consensus 103 V~r~I~~~~~~~~~in~-~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~------~~~~~lS~G~~qr~ 175 (251)
T cd03273 103 VTRQIVLGGTNKYLING-HRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWK------ESLTELSGGQRSLV 175 (251)
T ss_pred EEEEEEcCCceEEEECC-EEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhc------ccccccCHHHHHHH
Confidence 998885532211 111 122346788999999985 2222 35669999999999
Q ss_pred HHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 257 RIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 257 ~IAraL~----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
+||++|+ .+|++++|||||++||+..+..+++.|+++. +|.++|+++|.+ ++.+.||+++-+.
T Consensus 176 ~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 176 ALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9999998 5789999999999999999999999999985 488999988883 6788899998875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=224.15 Aligned_cols=190 Identities=16% Similarity=0.121 Sum_probs=130.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEe-CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCE----eCC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGA----KSE 178 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aliGpsGsGKSTLl~~L~G~~~-~~~~~~G~I~i~G~----~~~ 178 (513)
.++++|+. .|.+ . ++++|... +|++++|+||||||||||+++|++.+- +. .+....+.. ...
T Consensus 5 ~i~l~nf~-~y~~-----~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~---~~~~~~~~~~~~~~~~ 72 (213)
T cd03279 5 KLELKNFG-PFRE-----E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT---PRYGRQENLRSVFAPG 72 (213)
T ss_pred EEEEECCc-CcCC-----c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc---cccccchhHHHHhcCC
Confidence 46777776 5421 1 45566543 589999999999999999999996431 11 132322210 011
Q ss_pred CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHH-HHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 179 MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED-AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 179 ~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~-~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.....+++++|+..... ++.... ... .+...+. .++..++.+..++. +..|||||+||++
T Consensus 73 ~~~~~v~~~f~~~~~~~--~~~r~~------gl~-----~~~~~~~~~l~~g~l~~~l~~~------~~~lS~G~~~r~~ 133 (213)
T cd03279 73 EDTAEVSFTFQLGGKKY--RVERSR------GLD-----YDQFTRIVLLPQGEFDRFLARP------VSTLSGGETFLAS 133 (213)
T ss_pred CccEEEEEEEEECCeEE--EEEEec------CCC-----HHHHHHhhhhhhcchHHHhcCC------ccccCHHHHHHHH
Confidence 12346888888753211 111111 111 1111111 23444455665554 4599999999999
Q ss_pred HHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 258 IARELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 258 IAraL~~----------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
||++|+. +|++|||||||++||+.++..+.+.|+++++++.|||+++|++ ..+..+||++++|++|.+
T Consensus 134 la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 134 LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCCC
Confidence 9999985 5789999999999999999999999999987789999999987 578899999999998853
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=233.04 Aligned_cols=220 Identities=21% Similarity=0.257 Sum_probs=181.3
Q ss_pred CCceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC-
Q 010314 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM- 179 (513)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~- 179 (513)
+...|+++||++.-. .+...+++|||.+++||+++|.|-.|.|-+.|+.+|+|+.++.. |+|.++|++. ..
T Consensus 254 g~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~---G~I~l~G~~v~~~~ 326 (501)
T COG3845 254 GEVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRILLNGKDVLGRL 326 (501)
T ss_pred CCeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC---ceEEECCEeccccC
Confidence 356899999998642 22468999999999999999999999999999999999987764 9999999985 21
Q ss_pred -----CCceEEEEcCCc---ccCCCCCHHHHHHHHHHhcC-----C-CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC
Q 010314 180 -----PYGSYGFVERET---TLIGSLTVREYLYYSALLQL-----P-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (513)
Q Consensus 180 -----~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~-----~-~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~ 245 (513)
....++|||.|. .+.+.+|+.||+.+...... . -......+...++++.+++...- .....
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~-----~~~~a 401 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPS-----PDAPA 401 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCC-----CCcch
Confidence 124689999875 67889999999977643211 1 01134566788899999886221 12235
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+.||||++||+-+||+|..+|++|++.+||.|||..+...|.+.|.++++.|+.|++++.+ .++++.+||||.+|++|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~d-LDEil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED-LDEILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehh-HHHHHHhhheeeeeeCCc
Confidence 6999999999999999999999999999999999999999999999999999999996655 579999999999999999
Q ss_pred EEEEeChHH
Q 010314 326 TLFFGETLA 334 (513)
Q Consensus 326 iv~~G~~~~ 334 (513)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 998777654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=264.01 Aligned_cols=214 Identities=19% Similarity=0.186 Sum_probs=154.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHH---------HHHcCCCCCCCc---------
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLR---------AIAGRLPHSARM--------- 166 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~---------~L~G~~~~~~~~--------- 166 (513)
.++++|++. ..|+++|+.|++||+++|.|+||||||||++ .|.|..++...+
T Consensus 600 ~L~l~~~~~----------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi 669 (1809)
T PRK00635 600 TLTLSKATK----------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLV 669 (1809)
T ss_pred eEEEecccc----------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeE
Confidence 567777652 2699999999999999999999999999999 555643221000
Q ss_pred ------------eeEEEECCE--eCC----------------------------CCCceEEE----EcCC----------
Q 010314 167 ------------YGEVFVNGA--KSE----------------------------MPYGSYGF----VERE---------- 190 (513)
Q Consensus 167 ------------~G~I~i~G~--~~~----------------------------~~~~~~~y----v~Q~---------- 190 (513)
++.+++-|. ++. ...+..|+ .+..
T Consensus 670 ~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~Gk 749 (1809)
T PRK00635 670 HITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGK 749 (1809)
T ss_pred EecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCc
Confidence 112332220 000 00011222 1111
Q ss_pred -------cccCCCCCHHHHHHHHHHhc--CCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 191 -------TTLIGSLTVREYLYYSALLQ--LPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 191 -------~~l~~~lTV~E~l~~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
...+...||.|+|.+...-. ......+..+++ ++|+.+||.+. .++.+ ..|||||||||+||+
T Consensus 750 Ry~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~------~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 750 RFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL------SSLSGGEIQRLKLAY 822 (1809)
T ss_pred ccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc------ccCCHHHHHHHHHHH
Confidence 12456789999997764311 111112334455 58899999876 66654 499999999999999
Q ss_pred HHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe------CCeEEEEeC
Q 010314 261 ELV---MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFFGE 331 (513)
Q Consensus 261 aL~---~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~iv~~G~ 331 (513)
+|+ .+|++|||||||+|||+.++..++++|+++++.|.|||+++|++ +.+ ..||++++|. +|++++.|+
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gt 900 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCS 900 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCC
Confidence 998 69999999999999999999999999999998899999988887 456 8999999996 789999999
Q ss_pred hHHHHH
Q 010314 332 TLACLQ 337 (513)
Q Consensus 332 ~~~~~~ 337 (513)
++++..
T Consensus 901 peel~~ 906 (1809)
T PRK00635 901 PEELIH 906 (1809)
T ss_pred HHHHHh
Confidence 988753
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-26 Score=219.69 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=122.3
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEeC--CCCCceEEEEcCCc-----ccCCCC
Q 010314 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIA----GRLPHSARMYGEVFVNGAKS--EMPYGSYGFVERET-----TLIGSL 197 (513)
Q Consensus 129 vs~~i~~Ge~~aliGpsGsGKSTLl~~L~----G~~~~~~~~~G~I~i~G~~~--~~~~~~~~yv~Q~~-----~l~~~l 197 (513)
.++.+.+| +++|+||||||||||+++|. |..+++. |.+..+.... ......+++++|++ .....+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~---~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNS---KGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccc---ccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999995 8877753 5554111111 12234688888887 444556
Q ss_pred CHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH------HHHHHHHhhCCCEEEE
Q 010314 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR------VRIARELVMRPHVLFI 271 (513)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR------v~IAraL~~~P~iLll 271 (513)
|+.|++.+. + ...+++.+ ++ .++.||+||+|| ++||++|+.+|+++++
T Consensus 92 ~~~~~~~~~-----~------~~~~~~~~---------~~------~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 92 AILENVIFC-----H------QGESNWPL---------LD------MRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred hHhhceeee-----c------hHHHHHHH---------hc------CccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888888542 1 11122222 33 345999999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 272 DEPLYHLDSVSAL-LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 272 DEPTsgLD~~~~~-~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
||||++||+..+. .+.+.|++++++ |.+||+++|++. ....||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 889999999863 4567999999954
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-25 Score=250.25 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEEe
Q 010314 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRP---HVLFID 272 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P---~iLllD 272 (513)
+||.|++.|...+. . .....+.|+.+||.. ..++.+ ..||||||||+.||++|+.+| +|+|||
T Consensus 792 ltv~E~l~~f~~~~--~-----i~~~l~~L~~vgL~~l~l~~~~------~tLSgGEkQRl~LAraL~~~p~~~~llILD 858 (943)
T PRK00349 792 MTVEEALEFFEAIP--K-----IARKLQTLVDVGLGYIKLGQPA------TTLSGGEAQRVKLAKELSKRSTGKTLYILD 858 (943)
T ss_pred CcHHHHHHHHHhch--h-----hhHHHHHHHHCCCCcccccCCc------ccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 78888887754321 1 123467899999976 355544 499999999999999999999 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
|||+|||+..+..+++.|+++.+.|.|||+++|++. .+ ..||+|+.| ++|++++.|+++++..
T Consensus 859 EPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 859 EPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999888999999888873 44 579999999 7999999999988653
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-26 Score=229.70 Aligned_cols=203 Identities=19% Similarity=0.230 Sum_probs=161.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+.|.|... .-=+..||++++.||++-|+|.||||||||+++|.|+.+|++ |+|++||+++...
T Consensus 322 ~lelrnvrfay~~~----~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pqs---G~I~ldg~pV~~e~led 394 (546)
T COG4615 322 TLELRNVRFAYQDN----AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVSAEQLED 394 (546)
T ss_pred ceeeeeeeeccCcc----cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCC---CceeECCccCCCCCHHH
Confidence 68999999998632 245889999999999999999999999999999999999985 9999999986432
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
++-++-|+-|..+|+.+ +. +.. ....+.++..|+++.|.+...-.- |.-.+-.||.|||||+++-
T Consensus 395 YR~LfSavFsDyhLF~~l-----------l~-~e~-~as~q~i~~~LqrLel~~ktsl~d-~~fs~~kLStGQkKRlAll 460 (546)
T COG4615 395 YRKLFSAVFSDYHLFDQL-----------LG-PEG-KASPQLIEKWLQRLELAHKTSLND-GRFSNLKLSTGQKKRLALL 460 (546)
T ss_pred HHHHHHHHhhhHhhhHhh-----------hC-Ccc-CCChHHHHHHHHHHHHhhhhcccC-CcccccccccchHHHHHHH
Confidence 12234455555555432 11 111 123456888888888865432221 2334568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
.||+-+-+|+++||=-+.-||.-++.+.+.+--+ .+.|+||+.++|++ .-|..+||++.|.+|++++..
T Consensus 461 ~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999887654 56799999999986 468899999999999998764
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-25 Score=208.13 Aligned_cols=228 Identities=21% Similarity=0.208 Sum_probs=175.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCc-eeEEEECCEeC-C----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARM-YGEVFVNGAKS-E---- 178 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~-~G~I~i~G~~~-~---- 178 (513)
.+-++||+..+... .+..+++++||+++.+||+-+++|+||||||-..|+|+|..+..=.+ .-...+++.+. .
T Consensus 3 LLDIrnL~IE~~Ts-qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 3 LLDIRNLTIEFKTS-QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred cccccceEEEEecC-CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 46788899888643 24567999999999999999999999999999999999997654111 12334444331 1
Q ss_pred CC----CceEEEEcCCc--ccCCCCCHHHHHHHHH--HhcCCC---chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCC
Q 010314 179 MP----YGSYGFVERET--TLIGSLTVREYLYYSA--LLQLPG---FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (513)
Q Consensus 179 ~~----~~~~~yv~Q~~--~l~~~lTV~E~l~~~~--~~~~~~---~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~ 247 (513)
.. .+.+++++|++ .|-|.-+|...|.-.. +-.... ...-++.+.-++|..+|+.+..|-.- .||.+
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP~E 158 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYPYE 158 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCcch
Confidence 11 13478899987 4556666655442211 100000 01124567789999999988777653 48999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|.-||-|+|.||.|++.+|++||.||||+.+|+.++.+|+++|.++.+ .|.||++++|+. ..+.+.||++-||.-|+-
T Consensus 159 lTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQT 237 (330)
T ss_pred hccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEeccc
Confidence 999999999999999999999999999999999999999999999985 488888877665 689999999999999999
Q ss_pred EEEeChHHHHH
Q 010314 327 LFFGETLACLQ 337 (513)
Q Consensus 327 v~~G~~~~~~~ 337 (513)
++.++.++++.
T Consensus 238 ~ESa~~e~l~~ 248 (330)
T COG4170 238 VESAPSEELVT 248 (330)
T ss_pred ccccchhHHhc
Confidence 99999988764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=243.59 Aligned_cols=125 Identities=19% Similarity=0.229 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh---CCCEEEE
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVM---RPHVLFI 271 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~---~P~iLll 271 (513)
.+||.|.+.|...+. . .....++|+.+||.. ..++.+ ..|||||+|||.||++|+. +|+++||
T Consensus 789 ~~tv~e~~~f~~~~~--~-----i~~~l~~L~~~gL~~l~l~~~~------~tLSgGe~QRl~LA~aL~~~~~~p~llIL 855 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP--S-----ISRKLQTLCDVGLGYIKLGQPA------TTLSGGEAQRIKLAKELSKRSTGRTLYIL 855 (924)
T ss_pred CCcHHHHHHHHHhcc--c-----hhHHHHHHHHcCCCchhhcCcc------ccCCHHHHHHHHHHHHHhhcCCCCCEEEE
Confidence 357777776643321 1 123457889999975 355544 4999999999999999997 5999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHH
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLAC 335 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~ 335 (513)
||||+|||+..+..+++.|+++.+.|.|||+++|++. .+ ..||++++| ++|++++.|+++++
T Consensus 856 DEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 856 DEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999888999999888873 45 579999999 79999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=215.62 Aligned_cols=189 Identities=20% Similarity=0.260 Sum_probs=149.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..+.|.+++++|. .--|+--.+.+..||+++++||||-||||+.++|+|.++|+. |. .. .-.
T Consensus 341 ~lv~y~~~~k~~g------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPde---g~----~~-----~~~ 402 (591)
T COG1245 341 TLVEYPDLKKTYG------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDE---GS----EE-----DLK 402 (591)
T ss_pred eeeecchheeecC------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCC---CC----Cc-----cce
Confidence 4567777777763 235666677888999999999999999999999999999985 65 11 134
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
++|=||--.--...||.+.|.-........ .-...++++-+.|+++.++.+. +|||||.|||+||.+|.
T Consensus 403 vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~-----s~~~~ei~~pl~l~~i~e~~v~------~LSGGELQRvaIaa~L~ 471 (591)
T COG1245 403 VSYKPQYISPDYDGTVEDLLRSAIRSAFGS-----SYFKTEIVKPLNLEDLLERPVD------ELSGGELQRVAIAAALS 471 (591)
T ss_pred EeecceeecCCCCCcHHHHHHHhhhhhccc-----chhHHhhcCccchHHHHhcccc------cCCchhHHHHHHHHHhc
Confidence 778888644445679999886543221111 1234578888999999999775 99999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.+++|.+||||++.||...+..+-+.|+++.++ ++|.+++-|+. ..+--++||+++..
T Consensus 472 reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred cccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 999999999999999999999999999999864 77888766765 46777899998774
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-24 Score=221.19 Aligned_cols=211 Identities=25% Similarity=0.291 Sum_probs=140.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-Cc
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YG 182 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~ 182 (513)
..+.+++++++|. +..+++|++|.+.+|+-+||+|+|||||||+|++|.|...|....-+ ++.-.+..... ..
T Consensus 74 ~dvk~~sls~s~~-----g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d-~y~ls~e~~ps~~~ 147 (614)
T KOG0927|consen 74 RDVKIESLSLSFH-----GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID-FYLLSREIEPSEKQ 147 (614)
T ss_pred ccceeeeeeeccC-----CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc-hhhhcccCCCchHH
Confidence 3589999999984 56799999999999999999999999999999999999887531111 11111111000 00
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHH-HHh-----------------cCCC-chhhHHHHHHHHHHHcCC-hhHHhhhhcCC
Q 010314 183 SYGFVERETTLIGSLTVREYLYYS-ALL-----------------QLPG-FFCQRKNVVEDAIHAMSL-SDYANKLIGGH 242 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~-~~~-----------------~~~~-~~~~~~~~v~~~l~~~~L-~~~~~~~vg~~ 242 (513)
.+-++.+ +.-..+.-+.+- -.+ ++.. .......++.++|..+|. .+..++.+.
T Consensus 148 av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~-- 220 (614)
T KOG0927|consen 148 AVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVK-- 220 (614)
T ss_pred HHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhh--
Confidence 0000000 000000000000 000 0000 001223445566666665 456677654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 243 ~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
+||||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.-. + ++|+++| +.+.+-.+|.+|+-|.
T Consensus 221 ----~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh-~QDfln~vCT~Ii~l~ 293 (614)
T KOG0927|consen 221 ----DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSH-SQDFLNGVCTNIIHLD 293 (614)
T ss_pred ----ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEec-chhhhhhHhhhhheec
Confidence 9999999999999999999999999999999999999999888877532 2 5666555 4568889999999999
Q ss_pred CCeEEEE-eChHH
Q 010314 323 NGNTLFF-GETLA 334 (513)
Q Consensus 323 ~G~iv~~-G~~~~ 334 (513)
+++.+++ |+-+.
T Consensus 294 ~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 294 NKKLIYYEGNYDQ 306 (614)
T ss_pred ccceeeecCCHHH
Confidence 9996555 55443
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=225.14 Aligned_cols=202 Identities=20% Similarity=0.265 Sum_probs=156.9
Q ss_pred CCceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 010314 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (513)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (513)
+...+.++|++|.|.++ ..++++++|-+..++.+|++||||||||||||++.|.+.|.. |.|.-.-.
T Consensus 386 p~pvi~~~nv~F~y~~~----~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~---G~vs~~~H------ 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDN----PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI---GMVSRHSH------ 452 (614)
T ss_pred CCCeEEEeccccCCCCc----chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccc---cccccccc------
Confidence 45689999999999642 269999999999999999999999999999999999999974 87754322
Q ss_pred ceEEEEcCC--cccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 182 GSYGFVERE--TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 182 ~~~~yv~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+++..|+ ..+.-..++-|++.-. .+. ....+.+..++.++||.. ..+..+ .+||+|||+||..
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~~----~~~--~~~~e~~r~ilgrfgLtgd~q~~p~------~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMPK----FPD--EKELEEMRSILGRFGLTGDAQVVPM------SQLSDGQRRRVLF 520 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHHh----ccc--cchHHHHHHHHHHhCCCccccccch------hhcccccchhHHH
Confidence 223444443 3344456677766421 121 134567889999999984 444444 5999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE-EeCh
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF-FGET 332 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~-~G~~ 332 (513)
|+.++..|.||+|||||+|||..+...+-+.|.++- .+||+++|+. ..|.+++++|.+..+|.+.. .|+.
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---GGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---Cceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999888887752 3667767876 48899999999998887654 4543
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=201.76 Aligned_cols=168 Identities=20% Similarity=0.161 Sum_probs=117.9
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----C--CCCCceEEEEcCCcccCCCCCH
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----S--EMPYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~----~--~~~~~~~~yv~Q~~~l~~~lTV 199 (513)
++++++.+.+| +.+|+||||||||||+.+|...+.... . ....|.. + ......+.+.+++..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 45677777777 889999999999999999985432211 0 0011210 0 1112456777777665541
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCC
Q 010314 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL----VMRPHVLFIDEPL 275 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL----~~~P~iLllDEPT 275 (513)
+.. ......++++++. .+..++ .++.||+|||||++||++| +.+|+++||||||
T Consensus 84 ------------~~~-~~~~~~~~~~l~~---~~~~~~------~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~ 141 (198)
T cd03276 84 ------------PLC-VLSQDMARSFLTS---NKAAVR------DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD 141 (198)
T ss_pred ------------cCC-HHHHHHHHHHhcc---ccccCC------cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence 010 1123456666665 444444 4559999999999999999 5899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc--C-CeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 276 YHLDSVSALLMMVTLKKLAST--G-CTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~~~--g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+|||+..+..+.+.|+++.++ + .|||+++|+. .++..+ |+|.+|..++
T Consensus 142 ~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 142 VFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 999999999999999998643 3 5788877776 466664 9999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-24 Score=212.00 Aligned_cols=178 Identities=17% Similarity=0.160 Sum_probs=117.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------C-C----CCCceEEEEcCCccc-CCCCCHHHHH
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-------S-E----MPYGSYGFVERETTL-IGSLTVREYL 203 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-------~-~----~~~~~~~yv~Q~~~l-~~~lTV~E~l 203 (513)
.+++|+||||||||||+++|++.+.+.. |++...+.. . . ...-.+.|..|++.. .-..++.+..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~---~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKS---SHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCc---ccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 3999999999999999999999876542 555443311 0 0 001123454444221 0011111111
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhH--------------Hhhhhc--CCCCCCCCCHHHHHHHHHHHHHhhC--
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDY--------------ANKLIG--GHCYMKGLPCGERRRVRIARELVMR-- 265 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~--------------~~~~vg--~~~~~~~LSGGqrqRv~IAraL~~~-- 265 (513)
. .+..... ....+.++++++.+|+... .+..+. -...+..||||||||++||++++.+
T Consensus 100 ~---~~~ingk-~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 100 S---SYRINGK-VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred e---EEEECCE-EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhcc
Confidence 0 0111111 1223456788888888522 111100 0112368999999999999999975
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 266 --PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 266 --P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
|+++||||||+|||+..+..+.+.|++++++|.+||+++|++ ++...||++++|..
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 899999999999999999999999999987789999988884 56789999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=211.10 Aligned_cols=205 Identities=16% Similarity=0.239 Sum_probs=162.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...++++++++.-++. +..+++|+|+.|+.|+-+.|.||||||||+|+|+|+|+.|..+ |.+..-.+.. .+
T Consensus 431 Dn~i~~e~v~l~tPt~---g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~---G~l~k~~~~~---~~ 501 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN---GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTG---GKLTKPTDGG---PK 501 (659)
T ss_pred cceEEeeeeeecCCCC---CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCC---CeEEecccCC---CC
Confidence 4679999999987642 5678999999999999999999999999999999999988654 8887543321 14
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC------CCCCCCHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC------YMKGLPCGERRRV 256 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~------~~~~LSGGqrqRv 256 (513)
.+-|+||.|.+- .-|.||.+.|+..---+......++.+.+.|+.++|.++.++.- |.+ +...||+||+||+
T Consensus 502 ~lfflPQrPYmt-~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~g-gld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 502 DLFFLPQRPYMT-LGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREG-GLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred ceEEecCCCCcc-ccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhC-CCCchhhccHHhhcCHHHHHHH
Confidence 588999999765 44999999886321111111234567889999999999887753 333 3466999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
+.||.+.++|++-||||-||++|......+.+.+++ .|.|.|-+.|.. .+.++-|.++-|+.
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHH--HHHhhhhEEEEecC
Confidence 999999999999999999999999999999888766 588888877765 46677788888864
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=182.13 Aligned_cols=209 Identities=21% Similarity=0.272 Sum_probs=158.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...+++.++.|+|+. ..+++-|+|+.++.|.-..++|.||||||||||+|+|-.--.. |.|.++|++.-.
T Consensus 11 ~~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~---~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG---GVVQVLGRSAFHDTS 83 (291)
T ss_pred cceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC---CeEEEcCcCcccccc
Confidence 357899999999963 4589999999999999999999999999999999999865554 899999975211
Q ss_pred --CCceEEEEcC----------CcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCC
Q 010314 180 --PYGSYGFVER----------ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (513)
Q Consensus 180 --~~~~~~yv~Q----------~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~ 247 (513)
......|+-- +-.+...+++.+.| |+. ... ..++-+++++.+.+. + .+..+.
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV----~g~---dp~Rre~LI~iLDId-l-------~WRmHk 147 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGV----GGD---DPERREKLIDILDID-L-------RWRMHK 147 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHHHH-hhc----cCC---ChhHhhhhhhheecc-c-------eEEEee
Confidence 1112334322 22233356666555 321 111 113445566666553 1 234568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
+|-|||+||.|++-|+..-++|+|||-|--||..++..+++.+++-++ +|.|||..||-- +-+.....+++.|+.|++
T Consensus 148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl 226 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKL 226 (291)
T ss_pred ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCee
Confidence 999999999999999999999999999999999999999999999885 489999988875 467889999999999999
Q ss_pred EEEeChHHH
Q 010314 327 LFFGETLAC 335 (513)
Q Consensus 327 v~~G~~~~~ 335 (513)
+-.-+.+++
T Consensus 227 ~~~l~~~~i 235 (291)
T KOG2355|consen 227 VDNLKYQKI 235 (291)
T ss_pred eeccccchh
Confidence 875544443
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=209.74 Aligned_cols=203 Identities=22% Similarity=0.225 Sum_probs=142.4
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
+..|...++++.| +++.+|.+-++++..|..+||+|+||+|||||||+|+. |.|.....+.+. +
T Consensus 78 ~~Di~~~~fdLa~-----G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~--~ 141 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY-----GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEV--R 141 (582)
T ss_pred ccceeeeeeeeee-----cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhe--e
Confidence 4578999999998 45689999999999999999999999999999999986 333322211100 0
Q ss_pred eEEEEcCC-cccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 183 SYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 183 ~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
-.|++-. +.+...+.+.+.+.-...+... ....+...++|..+|..+ ...+.+ +.||||-|-|+++||
T Consensus 142 -g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~---~~l~ei~~~~L~glGFt~emq~~pt------~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 142 -GDDTEALQSVLESDTERLDFLAEEKELLAG---LTLEEIYDKILAGLGFTPEMQLQPT------KSLSGGWRMRLALAR 211 (582)
T ss_pred -ccchHHHhhhhhccHHHHHHHHhhhhhhcc---chHHHHHHHHHHhCCCCHHHHhccc------cccCcchhhHHHHHH
Confidence 0122211 1222233333333221111100 022333444888999875 444433 599999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLAC 335 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~ 335 (513)
||..+|+||||||||+.||..+..-+-+.|+.+. .|+|+++|+ +..+-..|..|+.+++-++- |.|.-++.
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 9999999999999999999999999999887763 688887776 46788899999999887763 45665543
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=187.45 Aligned_cols=146 Identities=17% Similarity=0.143 Sum_probs=109.2
Q ss_pred eeeeeeEEeCCc-EEEEEcCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCC
Q 010314 126 VKSSNGYALPGT-MTVIMGPAKSGKSTLLRAIA--------GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGS 196 (513)
Q Consensus 126 L~~vs~~i~~Ge-~~aliGpsGsGKSTLl~~L~--------G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~ 196 (513)
+-++|+++.+|+ +++|+|||||||||||++|+ |...|.. .. ..++|+.|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~---~~------------~~~~~~~~~~~---- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA---EG------------SSLPVFENIFA---- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc---cc------------ccCcCccEEEE----
Confidence 457888999994 89999999999999999998 4332210 00 11233333211
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
.++..+..+.. ...+|+||||++.|++++ .+|+++|+|||++
T Consensus 78 -------------------------------~lg~~~~l~~~------~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~ 119 (200)
T cd03280 78 -------------------------------DIGDEQSIEQS------LSTFSSHMKNIARILQHA-DPDSLVLLDELGS 119 (200)
T ss_pred -------------------------------ecCchhhhhcC------cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCC
Confidence 11111222222 237999999999999884 8999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 277 HLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 277 gLD~~~~~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||+..+..++ ..++.+.+.|.++|+++|+ .++..+||++++|.+|++++.+
T Consensus 120 glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 120 GTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 99999999996 4788887778999998886 3678999999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-21 Score=199.16 Aligned_cols=199 Identities=20% Similarity=0.246 Sum_probs=154.7
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
.+.+++.++++.|.... + +++.++++.+..-.-.+++|+||+||||++|++.|-+.|.. |.+.+.+ +.
T Consensus 360 ~p~l~i~~V~f~y~p~~-y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r---gi~~~~~------r~ 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE-Y--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR---GIVGRHP------RL 427 (582)
T ss_pred CCeeEEEeeeccCCCcc-h--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc---ceeeecc------cc
Confidence 45799999999885321 1 68999999999999999999999999999999999777654 7776654 35
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+++|-.|...=+-.+.|.+.-... .. .|. ..++.+++-+..+||. +++... +.+||||||=||++|..
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~-~~-~pG---~~~ee~r~hl~~~Gl~g~la~~s------i~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFME-KS-FPG---KTEEEIRRHLGSFGLSGELALQS------IASLSGGQKSRVAFAAC 496 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHH-Hh-CCC---CCHHHHHHHHHhcCCCchhhhcc------ccccCCcchhHHHHHHH
Confidence 688888864333234444332222 12 222 2345688889999997 455443 34899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
...+|.+|+|||||+.||..+-..+.+.|+.+. | .||+++|+. +.+..+|+.+.+.++|++.-
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--G-GVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--G-GVVLVSHDE-EFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHhcC--C-cEEEEECcH-HHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999888888763 3 466657775 68899999999999999865
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=199.58 Aligned_cols=169 Identities=25% Similarity=0.327 Sum_probs=128.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC-------CC----ceEEEEcCCc
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM-------PY----GSYGFVERET 191 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~~-------~~----~~~~yv~Q~~ 191 (513)
++|++++|+|+||-||||-+|+|+|.+.|.- |+-. +.|...+. .. ...-||.--+
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 4899999999999999999999999999874 3321 11111000 00 1122333333
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 010314 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (513)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLll 271 (513)
..+. -||.|.|.-. ..+...+++++.++|.+..++-+. +|||||.|||+||.+++.+.+++++
T Consensus 175 k~~K-G~v~elLk~~----------de~g~~devve~l~L~nvl~r~v~------~LSGGELQr~aIaa~l~rdADvY~F 237 (591)
T COG1245 175 KVVK-GKVGELLKKV----------DERGKFDEVVERLGLENVLDRDVS------ELSGGELQRVAIAAALLRDADVYFF 237 (591)
T ss_pred HHhc-chHHHHHHhh----------hhcCcHHHHHHHhcchhhhhhhhh------hcCchHHHHHHHHHHHhccCCEEEE
Confidence 3332 2677666321 122357899999999999999776 9999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
|||||-||...+..+.+.+++|++.+++||++-|+. ..+--++|-|.++..
T Consensus 238 DEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 238 DEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred cCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 999999999999999999999998899999976664 566678999999874
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-21 Score=195.56 Aligned_cols=192 Identities=24% Similarity=0.328 Sum_probs=147.5
Q ss_pred CCceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 010314 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (513)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (513)
..+.|-+.|++|.|++ .++++++++|-|.-...+||+||||.||||||++|.|-+.|.. |+..-|- +
T Consensus 583 ~PPvLGlH~VtFgy~g----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~---GE~RKnh------r 649 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPG----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND---GELRKNH------R 649 (807)
T ss_pred CCCeeecccccccCCC----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc---chhhccc------e
Confidence 3467899999999963 4578999999999999999999999999999999999999874 7665332 2
Q ss_pred ceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 182 GSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 182 ~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
-+|||..|.. .|...-|.-|.|.-. +.+| .+.....|-.+||...+++. .+..|||||+-||++|
T Consensus 650 L~iG~FdQh~~E~L~~Eetp~EyLqr~--FNlp------yq~ARK~LG~fGL~sHAHTi-----kikdLSGGQKaRVala 716 (807)
T KOG0066|consen 650 LRIGWFDQHANEALNGEETPVEYLQRK--FNLP------YQEARKQLGTFGLASHAHTI-----KIKDLSGGQKARVALA 716 (807)
T ss_pred eeeechhhhhHHhhccccCHHHHHHHh--cCCC------hHHHHHHhhhhhhhhccceE-----eeeecCCcchHHHHHH
Confidence 3589988863 455555666666321 2233 23456778899998777764 4579999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
..-+..|+||||||||++||..+...+.+.|++.. | .||+++|+.. .+.+---.++|+.+
T Consensus 717 eLal~~PDvlILDEPTNNLDIESIDALaEAIney~--G-gVi~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESIDALAEAINEYN--G-GVIMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--C-cEEEEecccc-eeeecCceEEEEcc
Confidence 99999999999999999999999999988888763 3 5666688764 44444345555544
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-21 Score=184.77 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=69.1
Q ss_pred CCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C-CeEEEEEeCChHHHHhcCC-
Q 010314 244 YMKGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-G-CTLLFTINQSSTEVFGLFD- 316 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL----~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g-~tvi~t~h~~~~~i~~~~D- 316 (513)
.+.+||||||||+.+|++| +.+|+++|+||||+|||+.++..+++.|++++++ | .++|+++||.. .+...||
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCc
Confidence 4569999999999887654 5799999999999999999999999999999866 5 57888888864 5566666
Q ss_pred -EEEEEeCCeE
Q 010314 317 -RICLLSNGNT 326 (513)
Q Consensus 317 -~v~vL~~G~i 326 (513)
+|++|++|+-
T Consensus 202 ~~v~~l~~g~~ 212 (213)
T cd03277 202 MTVLCVYNGPH 212 (213)
T ss_pred eEEEEEecCcc
Confidence 7888898873
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=169.64 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 248 LPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 248 LSGGqrqRv~IAraL~----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
||||||||++||++|+ .+|+++|+|||+++||+..+..+.+.|+++++.|.++|+++|++ +....+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 8999999999999996 69999999999999999999999999999987788999999986 34568999999964
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=183.70 Aligned_cols=184 Identities=28% Similarity=0.369 Sum_probs=137.0
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCCCceEEEEcCCc-ccCCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMPYGSYGFVERET-TLIGS 196 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-----~~~G~I~i~G~~~~~~~~~~~yv~Q~~-~l~~~ 196 (513)
..+|+|||+.++||++++|+|+|||||||||++|+|...... ..+|.|.+--.. ..+.+|-+. .-|..
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~~ 469 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFGE 469 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccCc
Confidence 469999999999999999999999999999999999753211 124666553211 112333321 11234
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 010314 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPT 275 (513)
.|+.|.+.- .+. .-....++|...||.+- +-+ ....+||.|||.|+.||.+|..+|.+++.||-.
T Consensus 470 ~tilehl~s-----~tG----D~~~AveILnraGlsDAvlyR-----r~f~ELStGQKeR~KLAkllaerpn~~~iDEF~ 535 (593)
T COG2401 470 VTILEHLRS-----KTG----DLNAAVEILNRAGLSDAVLYR-----RKFSELSTGQKERAKLAKLLAERPNVLLIDEFA 535 (593)
T ss_pred hhHHHHHhh-----ccC----chhHHHHHHHhhccchhhhhh-----ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhh
Confidence 566666521 111 12345688999999753 222 134599999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhc-CCEEEEEeCCeEE
Q 010314 276 YHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGL-FDRICLLSNGNTL 327 (513)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv 327 (513)
|.||+.++..+.+-|.+++++ |.|+++++|++ +.+-.+ -|+++++.-|++.
T Consensus 536 AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 536 AHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 999999999999999999865 99999999997 456666 7899888777653
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-20 Score=191.54 Aligned_cols=184 Identities=20% Similarity=0.276 Sum_probs=143.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..+.++|+-+-.+ .+..++..++|.+++|-.+.|+||||||||+|+++|.|+.|... |...+ .+...
T Consensus 480 ~gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~---g~L~~------P~~~~ 546 (728)
T KOG0064|consen 480 NGIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN---GLLSI------PRPNN 546 (728)
T ss_pred cceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccC---Ceeec------CCCcc
Confidence 4578888877665 34568999999999999999999999999999999999988642 54432 22345
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHH---hcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC----CCCCCCHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSAL---LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC----YMKGLPCGERRRV 256 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~---~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~----~~~~LSGGqrqRv 256 (513)
+-|+||.|.+- .-|.+|.+.|+-. ++.. .-.++..+.+|+.+.|++++.+-.| -+ +-..||||||||+
T Consensus 547 mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~k---g~~d~dL~~iL~~v~L~~i~qr~~g-~da~~dWkd~LsgGekQR~ 621 (728)
T KOG0064|consen 547 IFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRK---GYTDQDLEAILDIVHLEHILQREGG-WDAVRDWKDVLSGGEKQRM 621 (728)
T ss_pred eEeccCCCccC-cCcccceeecCCcHHHHHhc---CCCHHHHHHHHHHhhHHHHHHhccC-hhhhccHHhhccchHHHHH
Confidence 89999999876 5688888766421 1100 1124557888999999888776432 22 3345999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
++||.+-++|+.-+|||-||+..+.....+.+..+. .|.+.+-++|.|+
T Consensus 622 ~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps 670 (728)
T KOG0064|consen 622 GMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS 670 (728)
T ss_pred HHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc
Confidence 999999999999999999999998888888877654 4889998899885
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-19 Score=172.70 Aligned_cols=146 Identities=18% Similarity=0.120 Sum_probs=102.0
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
.+++|+++. .|++++|+||||||||||+|+|+|...- ...|.+... . .+++|.+.+|+.+|+.|++
T Consensus 15 ~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a--~--~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 15 RVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA--S--SFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred eecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec--C--ccCcccceEEEeccchhcc
Confidence 466776665 4799999999999999999999986421 122332211 1 3556777889999999999
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
.++.. .. .....++.++++.+++ .+|+++|+|||++|||+..+
T Consensus 81 ~~~~s----~~-~~e~~~~~~iL~~~~~--------------------------------~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 81 RDGIS----YF-YAELRRLKEIVEKAKK--------------------------------GEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred ccccC----hH-HHHHHHHHHHHHhccC--------------------------------CCCeEEEEecccCCCCHHHH
Confidence 66421 11 1122345555555431 68999999999999999999
Q ss_pred HHHH-HHHHHHHHcCCeEEEEEeCChHHHHhc--CCEEEEE
Q 010314 284 LLMM-VTLKKLASTGCTLLFTINQSSTEVFGL--FDRICLL 321 (513)
Q Consensus 284 ~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~--~D~v~vL 321 (513)
..+. ..++.+.+.|.++|+++|++ +.+..+ .++|-.+
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 8775 47888877789999988886 355444 4455544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=204.80 Aligned_cols=127 Identities=18% Similarity=0.271 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHH-hhhhcCCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEE
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFI 271 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~vg~~~~~~~LSGGqrqRv~IAraL~~~---P~iLll 271 (513)
.|||.|.+.|... ..+-.+.-+.|..+||..+. .+ ....|||||.||+-||..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~-------~~~i~~~L~~L~~vGLgYl~LGq------~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF-------LKKIQKPLQALIDNGLGYLPLGQ------NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc-------cHHHHHHHHHHHHcCCCeeeCCC------cCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 3566666655321 01223345678888987542 22 2347999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
||||+||++.....+++.|++|.+.|.|||++.|++ ++...||.|+-| +.|+||+.|+|+++..
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999987775 566779999999 3579999999998764
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-19 Score=171.84 Aligned_cols=152 Identities=21% Similarity=0.221 Sum_probs=113.0
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE-EEcCCcccCCCCCHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG-FVERETTLIGSLTVRE 201 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~E 201 (513)
+.+.+|+++...+|++++|.||||+|||||+++++=. .- ..++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-~~------------------la~~g~~vpa~~~~~~------ 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-VL------------------MAQIGCFVPCDSADIP------ 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-HH------------------HHHhCCCcCcccEEEe------
Confidence 3578999999999999999999999999999998721 00 01112 3333221111
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CC
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFIDEP---LY 276 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL--~~~P~iLllDEP---Ts 276 (513)
.+++++..+++.+... .++|.|+++++.+++++ +.+|+++||||| |+
T Consensus 72 -------------------~~~~il~~~~l~d~~~---------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 72 -------------------IVDCILARVGASDSQL---------KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred -------------------ccceeEeeeccccchh---------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 1233455566654332 38999999999999999 899999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 277 HLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
+||+..... ..++.+.+ .|.++|++||. .++.++||++..+++|++...+.
T Consensus 124 ~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999988754 33455554 48899998885 57899999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=161.32 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 247 GLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
+||+||+||++||++|+. +|+++|+|||++|||+.....+.+.|.++..++.++|+++|++ ++...+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 599999999999999997 7899999999999999999999999998865588999988876 4556799999996
Q ss_pred C
Q 010314 323 N 323 (513)
Q Consensus 323 ~ 323 (513)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=175.22 Aligned_cols=76 Identities=20% Similarity=0.161 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 247 GLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.|||||+||++||++++. +|+++|+||||++||+..+..+++.|+++.+ +.|+|+++|++. +..+||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997664 9999999999999999999999999999864 789999999863 568999999998
Q ss_pred CCe
Q 010314 323 NGN 325 (513)
Q Consensus 323 ~G~ 325 (513)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-18 Score=183.83 Aligned_cols=128 Identities=23% Similarity=0.296 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEEe
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP---HVLFID 272 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P---~iLllD 272 (513)
.|||.|...|.... | .-.+.-+.|..+||..+.- | .....|||||.|||-+|.+|..+. -+++||
T Consensus 783 ~MTveEA~~FF~~~--p-----~I~rkLqtL~dVGLgYi~L---G--QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLD 850 (935)
T COG0178 783 DMTVEEALEFFEAI--P-----KIARKLQTLVDVGLGYIKL---G--QPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 850 (935)
T ss_pred hccHHHHHHHHhcc--h-----HHHHHHHHHHHcCcceEec---C--CccccccchHHHHHHHHHHHhhccCCCeEEEeC
Confidence 35666666554311 1 1223445677788864421 1 133589999999999999999887 899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
|||+||-..-..++++.|.+|.+.|-|||++-|.. ++...||.|+-| ..|+||+.|+|+++..
T Consensus 851 EPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 851 EPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999999999999976664 588999999998 4579999999999865
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-18 Score=194.16 Aligned_cols=134 Identities=21% Similarity=0.264 Sum_probs=109.0
Q ss_pred CCCCHHHHHHHHHHhcCCCch--------hhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 195 GSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
..+||.|.+.|...+...... .+..++++ .|+.+||.++ .++.+. .|||||+|||.||++|+.+
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~------~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAG------TLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchh------hCCHHHHHHHHHHHHHhhC
Confidence 468999999885544332210 12233443 6888888765 566554 9999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 266 P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
| +||||||||+|||+..+..++++|++|++.|.|||+++|++. ++ ..||+|++| ++|++++.|+++++..
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 7 999999999999999999999999999888999999888864 55 469999999 9999999999988743
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-18 Score=167.05 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=102.8
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHH
Q 010314 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA 207 (513)
Q Consensus 129 vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~ 207 (513)
.++.+.+|++++|+|||||||||||++|++..- .. .|... ......++|..| ++..+...+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~---~g~~~------~~~~~~i~~~dq---i~~~~~~~d~i---- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQ---IGCFV------PAESASIPLVDR---IFTRIGAEDSI---- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHH---cCCCc------cccccccCCcCE---EEEEecCcccc----
Confidence 345556899999999999999999999995421 11 12111 001112333322 12111111111
Q ss_pred HhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 010314 208 LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287 (513)
Q Consensus 208 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~ 287 (513)
.. ....++++++| +..+.+++.+|+++|+||||+|||+.....+.
T Consensus 86 ----------------------------~~------~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 86 ----------------------------SD------GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ----------------------------cC------CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 11 11255666655 66667888999999999999999999988876
Q ss_pred H-HHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 288 V-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 288 ~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
. +++.+.+.+.++|+++|++ ++...++++..+..|++...++..+
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5 5677777788999988864 5677899999999999988876543
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-18 Score=176.35 Aligned_cols=207 Identities=21% Similarity=0.281 Sum_probs=143.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCC-
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSE- 178 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~---~~~~~~~~G~I~i~G~~~~- 178 (513)
.+.|.++|.+.+. .++.++.|.|+.|-.|..++|+||||-||||||+.|+.+ +||. =.|++..+.+.
T Consensus 262 a~DIKiEnF~ISA-----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn----IDvLlCEQEvva 332 (807)
T KOG0066|consen 262 AMDIKIENFDISA-----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN----IDVLLCEQEVVA 332 (807)
T ss_pred cccceeeeeeeec-----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC----CceEeeeeeeee
Confidence 4568888888776 356789999999999999999999999999999999987 3443 22333322110
Q ss_pred -----------CCCceEEEEcCCcc-----cCCCCCHHHHHHHH-HHhcCCCchhhHHHHHHHHHHHcCChhH-Hhhhhc
Q 010314 179 -----------MPYGSYGFVERETT-----LIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIG 240 (513)
Q Consensus 179 -----------~~~~~~~yv~Q~~~-----l~~~lTV~E~l~~~-~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg 240 (513)
...++...+..+.. --...|+.|-+.-. ..++.... .....+..++|.-+|...- .++.
T Consensus 333 d~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA-~sAEarARRILAGLGFskEMQ~rP-- 409 (807)
T KOG0066|consen 333 DSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGA-DSAEARARRILAGLGFSKEMQERP-- 409 (807)
T ss_pred cCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc-ccchhHHHHHHhhcCCChhHhcCC--
Confidence 00011111111110 11234555544221 11221111 1233456777887887643 3432
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEE
Q 010314 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 320 (513)
Q Consensus 241 ~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v 320 (513)
...+|||-|-||++||||..+|-+|.|||||++||.....-+-+.|+.+.+ |.++++|+- ..+-..|..|+.
T Consensus 410 ----t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK---TLLIVSHDQ-gFLD~VCtdIIH 481 (807)
T KOG0066|consen 410 ----TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQ-GFLDSVCTDIIH 481 (807)
T ss_pred ----ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh---eeEEEeccc-chHHHHHHHHhh
Confidence 247999999999999999999999999999999999999999999988864 888878876 578899999999
Q ss_pred EeCCeEEEE
Q 010314 321 LSNGNTLFF 329 (513)
Q Consensus 321 L~~G~iv~~ 329 (513)
|++-++.|+
T Consensus 482 LD~qkLhyY 490 (807)
T KOG0066|consen 482 LDNQKLHYY 490 (807)
T ss_pred hhhhhhhhh
Confidence 999888765
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=191.05 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHhcCCCch--------hhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 195 GSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
-.|||.|.+.|...+...... .+...++ +.|..+||..+ .++. +.+|||||+|||.||++|+.+
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~------~~tLSGGE~QRv~LA~aL~~~ 505 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRA------AGTLSGGEAQRIRLATQIGSG 505 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCC------cCcCCHHHHHHHHHHHHHhhC
Confidence 368899988776554322110 0111222 33667777654 4554 459999999999999999998
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHH
Q 010314 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (513)
Q Consensus 266 P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (513)
| +++||||||+|||+.....+++.|++|+++|.|||+++|++ +.+ ..||+|++| ++|++++.|+++++.
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 6 89999999999999999999999999998899999988886 455 589999999 899999999998864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=159.45 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=64.3
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcC
Q 010314 245 MKGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~---------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (513)
..-+|+||||+++||++|+ .+|+++++||||++||+..+..+++.|+++. .+++++||. ..+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~-~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDL-ADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCc-hhccchh
Confidence 3458999999999999985 7999999999999999999999999998753 355556665 3566777
Q ss_pred ---CEEEEEeCCeE
Q 010314 316 ---DRICLLSNGNT 326 (513)
Q Consensus 316 ---D~v~vL~~G~i 326 (513)
++++.|++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-16 Score=153.50 Aligned_cols=155 Identities=18% Similarity=0.142 Sum_probs=105.8
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
.+.+|+++...+ ++++|+||||||||||||+|++..-. |. .|.........++|+.| +++.+++.+++
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~l 86 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDDL 86 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhhh
Confidence 477888888877 99999999999999999999875322 21 12222222245666654 66777887777
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH--HHHHHHHHHHHHhhCCCEEEEeCC---CCCC
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC--GERRRVRIARELVMRPHVLFIDEP---LYHL 278 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG--GqrqRv~IAraL~~~P~iLllDEP---TsgL 278 (513)
..+ .|. .|+++++-+...+.+|+++||||| |++|
T Consensus 87 s~g-----------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 87 AGG-----------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred ccC-----------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 331 111 122233333333579999999999 8888
Q ss_pred CHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 279 D~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|.... ....++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..+++
T Consensus 126 D~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 126 DGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 87552 33455555655 88999988874 67889999888889998887766554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=150.82 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=96.2
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
+.+.+|+++.+.+|++++|+||||+|||||+++|+++.-- +++ | .|+ +..++.+++.|+
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G----------~~v---pa~~~~l~~~d~ 74 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---G----------CFV---PAEYATLPIFNR 74 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---C----------CCc---chhhcCccChhh
Confidence 4689999999999999999999999999999999987311 111 1 122 223445566666
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~ 282 (513)
|.. .++..+..++.. ..+|+|++|+ ..+.+++.+|+++|||||++|+|+..
T Consensus 75 I~~----------------------~~~~~d~~~~~~------S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 75 LLS----------------------RLSNDDSMERNL------STFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred eeE----------------------ecCCccccchhh------hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 632 112221122222 2789999975 55567889999999999999999977
Q ss_pred HHHH-HHHHHHHHHcCCeEEEEEeCC
Q 010314 283 ALLM-MVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 283 ~~~i-~~~L~~l~~~g~tvi~t~h~~ 307 (513)
...+ ...++.+.+.|.++|++||+.
T Consensus 126 ~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 126 GFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChH
Confidence 6665 456777777799999988875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=154.20 Aligned_cols=177 Identities=24% Similarity=0.289 Sum_probs=135.1
Q ss_pred ceeeeeeeeEEeCC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCC
Q 010314 123 DKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSL 197 (513)
Q Consensus 123 ~~iL~~vs~~i~~G-----e~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~l 197 (513)
+..+.+..+.|+.| |++..+|+||.||||++++++|+++|+. .|+|-. -.++|=+|...-=...
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p~---------lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIPV---------LNVSYKPQKISPKREG 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCcccc---------cceeccccccCccccc
Confidence 45667777777766 5789999999999999999999999874 344432 2356667754333356
Q ss_pred CHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010314 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (513)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsg 277 (513)
||++.+.--.+- .......+.++++-+.+++..|+-+. +|||||.|||+||.+|=..+++.+.|||.+-
T Consensus 418 tvR~ll~~kIr~-----ay~~pqF~~dvmkpL~ie~i~dqevq------~lSggelQRval~KOGGKpAdvYliDEpsAy 486 (592)
T KOG0063|consen 418 TVRQLLHTKIRD-----AYMHPQFVNDVMKPLQIENIIDQEVQ------GLSGGELQRVALALCLGKPADVYLIDEPSAY 486 (592)
T ss_pred hHHHHHHHHhHh-----hhcCHHHHHhhhhhhhHHHHHhHHhh------cCCchhhHHHHHHHhcCCCCceEEecCchhh
Confidence 898877432110 01234568888999999999988765 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 278 LDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 278 LD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
||+..+..--..+++.- ..++|-.++-|+. ...--++|||++..
T Consensus 487 lDSeQRi~AskvikRfilhakktafvVEhdf-ImaTYladrvivf~ 531 (592)
T KOG0063|consen 487 LDSEQRIIASKVIKRFILHAKKTAFVVEHDF-IMATYLADRVIVFE 531 (592)
T ss_pred cChHHHHHHHHHHHHHHHhccchhhhhhhHH-HHHHhhcceeEEEe
Confidence 99999999888888875 4567777766654 34456799988664
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.8e-15 Score=147.36 Aligned_cols=137 Identities=24% Similarity=0.248 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------CceEEEEcCCcccCCCCCHHHHHHHHHHhc
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP------YGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (513)
.-++|+||||||||||+++|+|+++++. |+|.++|+++... ...+++++|.+ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~---G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI---SQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC---ceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 5789999999999999999999999875 9999999875311 12245555543 233444433320
Q ss_pred CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 010314 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (513)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L 290 (513)
+ ..| ..+.++..+|++|++|||++ ...+..++
T Consensus 182 -------k------------------------------~~~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -------K------------------------------AEG-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -------H------------------------------HHH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 0 001 12223336999999999974 33344555
Q ss_pred HHHHHcCCeEEEEEeCChHH-H-----------HhcCCEEEEEeCCeEEEEeChHH
Q 010314 291 KKLASTGCTLLFTINQSSTE-V-----------FGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 291 ~~l~~~g~tvi~t~h~~~~~-i-----------~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
+.+ +.|.++|+++|.+..+ + ..+|||+++|++|+ ..|.+.+
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 554 3699999999975321 2 26799999999876 5555544
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-15 Score=142.55 Aligned_cols=77 Identities=17% Similarity=0.117 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 247 GLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVSALLMM-VTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~--~~P~iLllDEPTsgLD~~~~~~i~-~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.+|+|++| +++++. .+|+++|+|||++|+|+.....+. ..++.+.++ +.++|++||+. ++.+++|+.--+.
T Consensus 61 ~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~ 135 (185)
T smart00534 61 TFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVR 135 (185)
T ss_pred HHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccce
Confidence 68888776 444444 499999999999999999877764 566777764 88999988886 5778887644444
Q ss_pred CCeEEE
Q 010314 323 NGNTLF 328 (513)
Q Consensus 323 ~G~iv~ 328 (513)
+++...
T Consensus 136 ~~~~~~ 141 (185)
T smart00534 136 NLHMSA 141 (185)
T ss_pred EEEEEE
Confidence 444433
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-12 Score=134.61 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=65.6
Q ss_pred CCCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc
Q 010314 244 YMKGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~---------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (513)
....+|.||+|+++||+.|+ .+|+|||||||+++||+..+..+++.|.++ +..+++|+|+.. .+...
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~ 345 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADL 345 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhh
Confidence 33569999999999999986 799999999999999999999999988764 347788788763 45555
Q ss_pred C--CEEEEEeCCeE
Q 010314 315 F--DRICLLSNGNT 326 (513)
Q Consensus 315 ~--D~v~vL~~G~i 326 (513)
+ ++++.|++|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 3 57999999986
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-13 Score=130.21 Aligned_cols=118 Identities=24% Similarity=0.278 Sum_probs=79.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccC-CCCCHHHHHHHHHHhcCCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI-GSLTVREYLYYSALLQLPG 213 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G--~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~E~l~~~~~~~~~~ 213 (513)
.+++|.||||+|||||||.|+. .+.. .|...... ...++|..|....+ ...++.+++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a~------~~~~~~~d~i~~~l~~~~si~~~~---------- 89 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPAD------SATIGLVDKIFTRMSSRESVSSGQ---------- 89 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEcC------CcEEeeeeeeeeeeCCccChhhcc----------
Confidence 7899999999999999999984 3322 25443321 13466776643221 111111111
Q ss_pred chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHH
Q 010314 214 FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLKK 292 (513)
Q Consensus 214 ~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i-~~~L~~ 292 (513)
..+ .-+.||+++|++++.+|+++|+|||++|+|+.....+ ...++.
T Consensus 90 ------------------S~f---------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~ 136 (213)
T cd03281 90 ------------------SAF---------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEH 136 (213)
T ss_pred ------------------chH---------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHH
Confidence 111 2467899999999999999999999999999765444 568888
Q ss_pred HHHc---CCeEEEEEeCC
Q 010314 293 LAST---GCTLLFTINQS 307 (513)
Q Consensus 293 l~~~---g~tvi~t~h~~ 307 (513)
+.+. +.++|+++|+.
T Consensus 137 l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 137 LLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHhcCCCCcEEEEEcChH
Confidence 8754 24788888875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-13 Score=141.06 Aligned_cols=172 Identities=22% Similarity=0.281 Sum_probs=121.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEE------ECCEeCCCCC--------c---eEEEEcCCcccC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVF------VNGAKSEMPY--------G---SYGFVERETTLI 194 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~------i~G~~~~~~~--------~---~~~yv~Q~~~l~ 194 (513)
+||++++++|-||-||||-+++|+|.++|.- ...+-.+ +.|..+.... + ..-||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 4899999999999999999999999999863 0011111 1110000000 0 001222211111
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010314 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP 274 (513)
..+|.++|.- ...++..+++++.+.|....++-+. .|||||-||.+||.+.+.+.++.++|||
T Consensus 178 -k~~v~~~l~~----------~~~r~~~~~~~~~~~L~~~~~re~~------~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 178 -KGTVGSLLDR----------KDERDNKEEVCDQLDLNNLLDREVE------QLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred -HHHHHHHHHH----------HhhcccHHHHHHHHHHhhHHHhhhh------hcccchhhhhhhhhhhhhhcceeEecCC
Confidence 1133333311 1122356788888999998888765 9999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
.+-||...+..-...|+.|..-..=||++.|+. +...-+.|-++.|..
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDL-sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL-SVLDYLSDFICCLYG 288 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeec-hHHHhhhcceeEEec
Confidence 999999999999999999987777788877776 466677999999864
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.1e-14 Score=135.39 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 247 GLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.||||||.+++||--|+ ...+++|||||.++||...+..+.++|+++.++ .-+|+++|++ .++..+|+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ-SQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc--ccccccccccccc
Confidence 79999999999997764 467899999999999999999999999998743 5677778874 6889999887763
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-13 Score=153.43 Aligned_cols=129 Identities=14% Similarity=0.129 Sum_probs=89.6
Q ss_pred eeeEEeCC-cEEEEEcCCCCcHHHHHHHHHcC-CCCCCCcee-EEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHH
Q 010314 129 SNGYALPG-TMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYG-EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (513)
Q Consensus 129 vs~~i~~G-e~~aliGpsGsGKSTLl~~L~G~-~~~~~~~~G-~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (513)
+++.+.+| ++++|.||||+|||||||+|+|. +.+.. | .|... ....++|..|...
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~---G~~Vpa~------~~~~~~~~d~i~~------------- 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS---GIPIPAN------EHSEIPYFEEIFA------------- 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh---CCCccCC------ccccccchhheee-------------
Confidence 68888877 99999999999999999999997 22221 2 11110 0011222222100
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010314 206 SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (513)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~ 285 (513)
.. +..+.... ....+|+|+++++.|++.+ .+|+++|+|||++|+|+.....
T Consensus 372 ----~i------------------~~~~si~~------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~a 422 (771)
T TIGR01069 372 ----DI------------------GDEQSIEQ------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSA 422 (771)
T ss_pred ----ec------------------ChHhHHhh------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHH
Confidence 00 00000111 1237999999999998877 8999999999999999999999
Q ss_pred H-HHHHHHHHHcCCeEEEEEeCCh
Q 010314 286 M-MVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 286 i-~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
+ ..+|..+.+.|.++|++||+..
T Consensus 423 la~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 423 LAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHhcCCEEEEECChHH
Confidence 8 5778888878999999888863
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=112.98 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=58.4
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCceEEEEcCCcccCCCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSL 197 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~l 197 (513)
+.+|+++++.+++|++++|+||||||||||+++|. +|++.++|.+... ..+.++|++|+ +| ..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hh
Confidence 46899999999999999999999999999999986 2899999986421 22446777777 44 45
Q ss_pred CHHHHHHHH
Q 010314 198 TVREYLYYS 206 (513)
Q Consensus 198 TV~E~l~~~ 206 (513)
|++|||.++
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999773
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-12 Score=126.73 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPL-----YHLDSVSALLMMVTLKKLAS 295 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPT-----sgLD~~~~~~i~~~L~~l~~ 295 (513)
|++++.||++++.+|+++++|||| +|||+..+..+++.|+++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999874
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-12 Score=142.32 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=69.3
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 246 KGLPCGERRRVRIARELVMR----PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~----P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
..|||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++++ +.+||++||++. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999974 899999999863 44689999999
Q ss_pred eCCe
Q 010314 322 SNGN 325 (513)
Q Consensus 322 ~~G~ 325 (513)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-12 Score=124.21 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=85.3
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~-~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
+.+.+|+++.+.+|++++|+||||+||||++++|++. +.+.. |....... -.++|..| ++..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~---G~~v~a~~------~~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQI---GSFVPASS------ATLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhC---CCEEEcCc------eEEeccce---EEEEecCcc
Confidence 3578999999999999999999999999999999994 34432 65443211 12333322 121111122
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP--CGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LS--GGqrqRv~IAraL~~~P~iLllDEPTsgLD 279 (513)
++.- ++| ..|-+|++-....+.+|+++|+|||.+|.|
T Consensus 86 ~~~~-----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~ 124 (222)
T cd03287 86 SIQH-----------------------------------------GMSTFMVELSETSHILSNCTSRSLVILDELGRGTS 124 (222)
T ss_pred cccc-----------------------------------------ccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCC
Confidence 2100 111 122333333333456799999999999999
Q ss_pred HHHHHHH-HHHHHHHHHc-CCeEEEEEeCC
Q 010314 280 SVSALLM-MVTLKKLAST-GCTLLFTINQS 307 (513)
Q Consensus 280 ~~~~~~i-~~~L~~l~~~-g~tvi~t~h~~ 307 (513)
+.....+ ...++.+.+. +.++|++||+.
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~ 154 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYP 154 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccH
Confidence 7777664 5677777765 88999988886
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=120.30 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=92.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhc
Q 010314 132 YALPGTMTVIMGPAKSGKSTL-LRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTL-l~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (513)
-+++|++++|.|+|||||||| ++++++..+++. . +.|+.. ..+..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~---~---------------~~yi~~------e~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY---S---------------VSYVST------QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC---c---------------EEEEeC------CCCHHHHHHHHHHhC
Confidence 377999999999999999999 689998765431 1 233321 224555554332222
Q ss_pred CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCC----CHHH
Q 010314 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHL----DSVS 282 (513)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~----~P~iLllDEPTsgL----D~~~ 282 (513)
.. +++.... +.-...+ .++ .+|+++.++..+.+.+-. +|+++++||||+++ |+..
T Consensus 76 ~~---------~~~~~~~-~~l~~~~------~~~-~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 76 YD---------INKKLIS-GKLLYIP------VYP-LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred Cc---------hHHHhhc-CcEEEEE------ecc-cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 11 0111110 1000000 011 467776666555544433 69999999999999 8888
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeCChH------HHHhcCCEEEEEe
Q 010314 283 ALLMMVTLKKLASTGCTLLFTINQSST------EVFGLFDRICLLS 322 (513)
Q Consensus 283 ~~~i~~~L~~l~~~g~tvi~t~h~~~~------~i~~~~D~v~vL~ 322 (513)
...+++.++.+++.|.|+++++|.... .+..+||-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 899999999998878888875443210 1244567777776
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=116.20 Aligned_cols=79 Identities=23% Similarity=0.084 Sum_probs=65.3
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCeEEEEEeCChH-----
Q 010314 244 YMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLD---SVSALLMMVTLKKLASTGCTLLFTINQSST----- 309 (513)
Q Consensus 244 ~~~~LSGGqrq------Rv~IAraL~~~P~iLllDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~----- 309 (513)
.+..+|+|++| ....+.+...+|+++++|||++.+| ......+.++++.+++.|.|+|+++|+...
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 44589999998 5555555677999999999999999 888888999999998889999998886542
Q ss_pred ---HHHhcCCEEEEEe
Q 010314 310 ---EVFGLFDRICLLS 322 (513)
Q Consensus 310 ---~i~~~~D~v~vL~ 322 (513)
.+..+||.++.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 2678899999986
|
A related protein is found in archaea. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-12 Score=147.42 Aligned_cols=81 Identities=19% Similarity=0.070 Sum_probs=73.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHH
Q 010314 243 CYMKGLPCGERRRVRIARELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (513)
Q Consensus 243 ~~~~~LSGGqrqRv~IAraL~~----------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (513)
..+..|||||++||+||+||+. +|++||+||||+|||+.+...+++.|+.+...|++|+|++|++ ....
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHH
Confidence 4567999999999999999986 7999999999999999999999999999987899999988876 5788
Q ss_pred hcCCEEEEEeCC
Q 010314 313 GLFDRICLLSNG 324 (513)
Q Consensus 313 ~~~D~v~vL~~G 324 (513)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 999999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=136.44 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 246 KGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
+.|||||+|||+||++++. +|+++|||||++|||..++..+.+.|+++++ +.+|||+||++ .+..+||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999974 68899999987 356899999999
Q ss_pred eCC
Q 010314 322 SNG 324 (513)
Q Consensus 322 ~~G 324 (513)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 875
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.7e-12 Score=139.12 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHH
Q 010314 244 YMKGLPCGERRRVRIARELV----------MRPHVLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~----------~~P~iLllDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (513)
.+..||||||||++||++|+ .+|++||||||| ++||+.....+++.|+.+ .|.+||+++|++ ...
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence 55789999999999999987 599999999998 789999999999999998 578999989985 355
Q ss_pred hcCCEEEEEeC-CeE
Q 010314 313 GLFDRICLLSN-GNT 326 (513)
Q Consensus 313 ~~~D~v~vL~~-G~i 326 (513)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 554
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.4e-12 Score=142.85 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
..+|+||+|++.|++++ .+|+++|||||++|+|+.....+.. ++..+.+.|.++|++||+. ......+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCeE-EE
Confidence 37999999999999998 8999999999999999999988864 6777777789999988885 3444455555444 45
Q ss_pred eEEEE
Q 010314 325 NTLFF 329 (513)
Q Consensus 325 ~iv~~ 329 (513)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-11 Score=128.79 Aligned_cols=171 Identities=18% Similarity=0.170 Sum_probs=108.7
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---C----------CCCceEEEEc
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---E----------MPYGSYGFVE 188 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~---~----------~~~~~~~yv~ 188 (513)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.- . ...+.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~---gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL---NVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe---EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 34689999 9999999999999999999999999999988864 9999866432 1 0124577776
Q ss_pred CCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh--HHhhhhcCCCCCCCCCHHHHHHHHHH-HHHhhC
Q 010314 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRIA-RELVMR 265 (513)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~~~vg~~~~~~~LSGGqrqRv~IA-raL~~~ 265 (513)
+.+.-. -.+....+.+ -.+.|.+...|-+- +.|. |+ |.+-| |++.
T Consensus 221 ~~~~~~---~~r~~~~~~a------------~~iAEyfr~~g~~Vll~~Ds----------lt-----r~A~A~rEis-- 268 (438)
T PRK07721 221 TSDQPA---LMRIKGAYTA------------TAIAEYFRDQGLNVMLMMDS----------VT-----RVAMAQREIG-- 268 (438)
T ss_pred CCCCCH---HHHHHHHHHH------------HHHHHHHHHCCCcEEEEEeC----------hH-----HHHHHHHHHH--
Confidence 543211 0111111110 01122222222110 0010 00 00000 1110
Q ss_pred CCEEEEeCC--CCCCCHHHHHHHHHHHHHHHH--cCC-----eEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 266 PHVLFIDEP--LYHLDSVSALLMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 266 P~iLllDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
+.+.|| |+|+|+.....+.++++++.. .|. ||++.+|+.. ..+||++..|.+|+++..+...+
T Consensus 269 ---l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 ---LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ---HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccHHH
Confidence 012343 789999999999999999974 575 8888888764 27899999999999999998754
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.7e-12 Score=124.45 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=61.2
Q ss_pred CCCCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCeEEEEEeCChHHHHhcCC
Q 010314 246 KGLPCGE--------RRRVRIARELVMRPHVLFIDEPLYHLDSVSALL-MMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (513)
Q Consensus 246 ~~LSGGq--------rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~-i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (513)
..+|||+ +||+++||++..+++|.+| ||+.+|+.+... ++ +..+...+.|.|+.+|.. .....+|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~l--a~~~~~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRL--AERRIFP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHH--hhCCCCC
Confidence 4579999 9999999999999999999 999999655443 44 555554567888878875 3567899
Q ss_pred EEEEEeCCeE
Q 010314 317 RICLLSNGNT 326 (513)
Q Consensus 317 ~v~vL~~G~i 326 (513)
.|.+|+.|.+
T Consensus 202 aI~vl~s~sr 211 (249)
T cd01128 202 AIDILKSGTR 211 (249)
T ss_pred eEEEcCCCCc
Confidence 9999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.9e-11 Score=116.12 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=87.8
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
+.+-+|+++..++|++++|.||||+|||||++++++..--.. .| .........++++ +.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~--~G------~~vpa~~~~i~~~---~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ--MG------MDVPAKSMRLSLV---DRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH--cC------CccCccccEeccc---cEEEEecCcccc
Confidence 357899999999999999999999999999999988632100 01 1111001111111 223333333333
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC--GERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG--GqrqRv~IAraL~~~P~iLllDEPTsgLD~ 280 (513)
+.. ++|. .|-++++-....+.+|+++|+|||.+|+|+
T Consensus 86 ~~~-----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 86 IMK-----------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccc-----------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 311 0110 123333333333568999999999999999
Q ss_pred HHHHHHHHH-HHHHHHc-CCeEEEEEeCChHHHHhc
Q 010314 281 VSALLMMVT-LKKLAST-GCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 281 ~~~~~i~~~-L~~l~~~-g~tvi~t~h~~~~~i~~~ 314 (513)
.....+... ++.|.+. +.++|+++|+. +.+..+
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~-el~~~~ 159 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYH-SLCDEF 159 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccH-HHHHHh
Confidence 999988888 7778765 88999988876 344443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.3e-12 Score=118.41 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEP--LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEP--TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
..+||+++-++.+++..+.+|++|++||| +.++| ..+.+.|..+.+.|.++|+++|.. .+..++|++..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 46999999999999999999999999995 33444 445677777666789999999873 56678999999999
Q ss_pred CeEEEE
Q 010314 324 GNTLFF 329 (513)
Q Consensus 324 G~iv~~ 329 (513)
|+++..
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998765
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=125.92 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHhcCCCchhh-HHHHHHHH------HHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 010314 195 GSLTVREYLYYSALLQLPGFFCQ-RKNVVEDA------IHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~-~~~~v~~~------l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P 266 (513)
..|++.+.+.|...+.+...... ....+.++ |-.+||..+ +++.. ..|||||.||+-||.-|=.+=
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a------~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSA------GTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccC------CCcChhHHHHHHHHHHhcccc
Confidence 45778888877665554332111 11122222 334566543 33333 489999999999999997653
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 267 --HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 267 --~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
=+++||||+.||-+.--.++++.|++|++.|-|+|++-|+. ++...||+|+-| +.|+||+.|++++++.
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 36799999999999999999999999999999999987764 678899999998 5689999999999875
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-11 Score=115.85 Aligned_cols=62 Identities=26% Similarity=0.403 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 246 KGLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P---~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
..+|.|++|.+.|+..|...+ .++++|||-++|+|..+..+++.|+.+.+.+.-+|+|||.|
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp 299 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP 299 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence 456999999999999998877 89999999999999999999999988876678899999976
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.6e-11 Score=136.44 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCC
Q 010314 243 CYMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (513)
Q Consensus 243 ~~~~~LSGGqrq------Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (513)
..+..|||||++ |++||++++.+|+++||||||+|||+..+..+.++|..+...+.+||+++|++ .+...||
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCC
Confidence 356789999999 55566688899999999999999999999999999999877678899988886 4678999
Q ss_pred EEEEEe
Q 010314 317 RICLLS 322 (513)
Q Consensus 317 ~v~vL~ 322 (513)
++++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999997
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-10 Score=119.84 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=94.1
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCCC-ceEEEEcCCcc-cCCCCCHHHHHHH
Q 010314 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPY-GSYGFVERETT-LIGSLTVREYLYY 205 (513)
Q Consensus 129 vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~~~-~~~~yv~Q~~~-l~~~lTV~E~l~~ 205 (513)
+++.++.|+.++|.||+|||||||+++|++.+++.. |.+.+..... .... ..+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~---~iv~ied~~El~~~~~~~~~l~~~~~~~~~~---------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE---RIITIEDTREIFLPHPNYVHLFYSKGGQGLA---------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccc---cEEEEcCccccCCCCCCEEEEEecCCCCCcC----------
Confidence 567788999999999999999999999999998764 7677653211 1000 11111111000 000
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010314 206 SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (513)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~ 285 (513)
.++- .-.++.+|-.+|++|++|||.+ .+
T Consensus 204 -----------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 204 -----------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -----------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 1111 1134566778999999999996 34
Q ss_pred HHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 286 i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
++++++.+...+.+++.|+|..+ +....||+..|..|++...|.+.+.+
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56777776633345688888764 56679999999999988888877665
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=135.19 Aligned_cols=80 Identities=24% Similarity=0.169 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc
Q 010314 243 CYMKGLPCGERRRVRIARELVM--------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 243 ~~~~~LSGGqrqRv~IAraL~~--------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (513)
..+..|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+.+.|++|++++|.. .....+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence 4567999999999999999996 8999999999999999999999999999988899999988864 455667
Q ss_pred CCEEEEEeC
Q 010314 315 FDRICLLSN 323 (513)
Q Consensus 315 ~D~v~vL~~ 323 (513)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 777777764
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-10 Score=121.27 Aligned_cols=169 Identities=16% Similarity=0.110 Sum_probs=116.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
+.-++++..+. .+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---gvI~~iGer--------- 193 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI---NVISLVGER--------- 193 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe---EEEEeCCCC---------
Confidence 45555655443 234688885 9999999999999999999999999999988763 777665542
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh--
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-- 263 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~-- 263 (513)
..+|.|.+.... ..-++... ..+ ....+-|.|+|+|++.+.+.+
T Consensus 194 ----------g~ev~e~~~~~l-------------------~~~gl~~t--vvv---~~tsd~s~~~r~ra~~~a~~iAE 239 (432)
T PRK06793 194 ----------GREVKDFIRKEL-------------------GEEGMRKS--VVV---VATSDESHLMQLRAAKLATSIAE 239 (432)
T ss_pred ----------cccHHHHHHHHh-------------------hhccccee--EEE---EECCCCCHHHHHHHHHHHHHHHH
Confidence 136666653211 11111110 001 123478999999999999988
Q ss_pred -----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 264 -----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 264 -----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
.++-+|++|+||.+.|+. .+|-..+.+....|.+..+.+|++ .+ ++|.....+|.+...+..
T Consensus 240 yfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L---~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 240 YFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KL---LERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hH---HHHhccCCCcceEEEEEE
Confidence 789999999999999996 555556666654577777766642 33 445455678888776654
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-10 Score=101.44 Aligned_cols=63 Identities=13% Similarity=0.041 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChH
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTs----------gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (513)
..+.++.+++..+++...+|+++++||+++ ++|......+.+++..+.+.+.|+|+++|.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 345666778888999999999999999995 455555666666666665669999999887753
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=124.37 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=60.1
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHH---------hcCCEEEEEeCCeEEEEeCh
Q 010314 263 VMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF---------GLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 263 ~~~P~iLllDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~---------~~~D~v~vL~~G~iv~~G~~ 332 (513)
..+|.++++|||+.+| |+..+..+.+.++.+++.|.++|+++|++. ++. +.||++++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999988999999888875 443 68999999999998766643
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.4e-10 Score=134.51 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC---CCCCCCCCHHHHH------HHHHHHHHhhCC
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG---HCYMKGLPCGERR------RVRIARELVMRP 266 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~---~~~~~~LSGGqrq------Rv~IAraL~~~P 266 (513)
..|+.+||.+ + +.. ... ..+++..+...+....+.| ...+..||||||| |++||++|+.+|
T Consensus 1155 ~~~~~~~i~~----~-~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~ 1224 (1311)
T TIGR00606 1155 RGQDIEYIEI----R-SDA---DEN--VSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNC 1224 (1311)
T ss_pred CccHHHHhhc----C-CCC---ChH--HHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCC
Confidence 3588888865 1 211 111 2334444444444433333 1244679999999 999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCeEEEEEeCChHHHHhcC
Q 010314 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQSSTEVFGLF 315 (513)
Q Consensus 267 ~iLllDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~t~h~~~~~i~~~~ 315 (513)
+||+|||||+|||+.+...+.+.|..+.. .|.+||+++|++ ..+..+|
T Consensus 1225 ~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~~~ 1277 (1311)
T TIGR00606 1225 GIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVELLG 1277 (1311)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHHHh
Confidence 99999999999999999999999988742 378999988876 5677665
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7e-10 Score=129.19 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-Hc-C-CeEEEEEeCChHHHHhc
Q 010314 244 YMKGLPCGERRRVRI------ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-ST-G-CTLLFTINQSSTEVFGL 314 (513)
Q Consensus 244 ~~~~LSGGqrqRv~I------AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~t~h~~~~~i~~~ 314 (513)
.+..|||||++|++| |++|+.+|++++|||||+|||+.....+.+.|+... .. | .++|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 589999999999999999999999999999998654 33 3 47888888863 4578
Q ss_pred CCEEEEEe
Q 010314 315 FDRICLLS 322 (513)
Q Consensus 315 ~D~v~vL~ 322 (513)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.6e-09 Score=95.90 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
.+..|-||-=---+.+.+ .+--|.|||||-++|.|.-+..++..|++|++.|.-+|+.||-|.- +.----+|+-++.+
T Consensus 127 Lh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL-lAiP~A~I~~~~~~ 204 (233)
T COG3910 127 LHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL-LAIPGAEIYEISES 204 (233)
T ss_pred hhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh-eeCCCcEEEEEecC
Confidence 456788887555454444 5668999999999999999999999999999999899999998742 21123356656555
Q ss_pred e
Q 010314 325 N 325 (513)
Q Consensus 325 ~ 325 (513)
.
T Consensus 205 g 205 (233)
T COG3910 205 G 205 (233)
T ss_pred C
Confidence 4
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=99.08 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=94.9
Q ss_pred eeee-eeEEeCCcEEEEEcCCCCcHHHHHHHHH-cCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 126 L~~v-s~~i~~Ge~~aliGpsGsGKSTLl~~L~-G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
|+.+ .+=+++|.++.|.|++|+|||||...++ +....+ +. +.|+.-+ -+..+.+
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g----~~--------------~~y~~~e------~~~~~~~ 69 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQG----KK--------------VYVITTE------NTSKSYL 69 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCC----CE--------------EEEEEcC------CCHHHHH
Confidence 4443 4558899999999999999999998875 222221 22 3333332 1233322
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---C
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM--RPHVLFIDEPLYH---L 278 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~--~P~iLllDEPTsg---L 278 (513)
.-...+.... .+.+. .+...+.+..+. .....+.++.+.+.++..++. +|+++++||||+. +
T Consensus 70 ~~~~~~g~~~---------~~~~~-~g~l~i~~~~~~---~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~ 136 (234)
T PRK06067 70 KQMESVKIDI---------SDFFL-WGYLRIFPLNTE---GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA 136 (234)
T ss_pred HHHHHCCCCh---------hHHHh-CCCceEEecccc---ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC
Confidence 2111111110 00000 011111111110 112356788999999999998 9999999999964 4
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEEeCChH------HHHhcCCEEEEEeC
Q 010314 279 DSVSALLMMVTLKKLASTGCTLLFTINQSST------EVFGLFDRICLLSN 323 (513)
Q Consensus 279 D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~------~i~~~~D~v~vL~~ 323 (513)
|......+++.++.+++.|.|+++++|+... .+..++|-++.|+.
T Consensus 137 ~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 137 EEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 5555556666677777778999998876532 14567787777763
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.95 E-value=9e-10 Score=131.05 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEE
Q 010314 244 YMKGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (513)
.+..||||||+|++||++++ .+|+++||||||++||+.+...|.++|+.+++ +.++|+++|++. ...+||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 55789999999999999985 57799999999999999999999999999875 478888899864 457899998
Q ss_pred EEe
Q 010314 320 LLS 322 (513)
Q Consensus 320 vL~ 322 (513)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-09 Score=126.48 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=67.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEE
Q 010314 244 YMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (513)
.+..||||||++++||++|+. .|+++|||||+++||+.....+.++|+.+.. +..+|++||++ .+..+||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH--HHHHhcceeE
Confidence 456899999999999999985 6799999999999999999999999999865 46778888986 3668999998
Q ss_pred EEeC
Q 010314 320 LLSN 323 (513)
Q Consensus 320 vL~~ 323 (513)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=97.67 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
+|+++|..+|+++++|||. |......++ +.+..|..++.|+|..+ +...+||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778999999999999996 655433333 34567899999999874 446789987774
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.5e-09 Score=120.91 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=66.4
Q ss_pred CCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-eEEEEEeCChHHH
Q 010314 245 MKGLPCGERR------RVRIARELVMR-----P-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQSSTEV 311 (513)
Q Consensus 245 ~~~LSGGqrq------Rv~IAraL~~~-----P-~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvi~t~h~~~~~i 311 (513)
+..||||||+ |++||++++.+ | .++||||||++||+.....++++|+.+...|. +||+++|++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 5689999999 99999999864 3 67999999999999999999999999986664 7888888863 4
Q ss_pred HhcCCEEEEEeCC
Q 010314 312 FGLFDRICLLSNG 324 (513)
Q Consensus 312 ~~~~D~v~vL~~G 324 (513)
...||+++.|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 4679999999643
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=100.44 Aligned_cols=135 Identities=23% Similarity=0.389 Sum_probs=80.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G-~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (513)
|.+..|+||+|+|||||+-.++=-... |.=++++ ... .....+.|+.=++..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~-----G~~~~g~~~~~-~~~~~Vlyi~~Ed~~--------------------- 53 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMAL-----GKNLFGGGLKV-TEPGRVVYLSAEDPR--------------------- 53 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhc-----CccccCCcccc-CCCceEEEEECCCCH---------------------
Confidence 678899999999999998887632211 2211111 111 111234444322110
Q ss_pred hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC--
Q 010314 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR----------------ELVMRPHVLFIDEPLY-- 276 (513)
Q Consensus 215 ~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr----------------aL~~~P~iLllDEPTs-- 276 (513)
.+..+++..+...+++.+..++.+ +.+|+.|++.+++ ....+|+++++| |++
T Consensus 54 -~~i~~Rl~~i~~~~~~~~~~~rl~--------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 54 -EEIHRRLEAILQHLEPDDAGDRLF--------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF 123 (239)
T ss_pred -HHHHHHHHHHHhhcCCcCcccceE--------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence 122334555555555444333321 1244555554443 345799999999 775
Q ss_pred ----CCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCC
Q 010314 277 ----HLDSVSALLMMVTLKKLAST-GCTLLFTINQS 307 (513)
Q Consensus 277 ----gLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~ 307 (513)
.+|+.....+++.|++++++ |.+||+++|..
T Consensus 124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 47999999999999999864 88999865554
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.82 E-value=3e-09 Score=115.60 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=100.9
Q ss_pred eeee-eeEEeCCcEEEEEcCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEeCC----CCCceEEEEcCCcccCCCCC
Q 010314 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSE----MPYGSYGFVERETTLIGSLT 198 (513)
Q Consensus 126 L~~v-s~~i~~Ge~~aliGpsGsGKSTLl~~L--~G~~~~~~~~~G~I~i~G~~~~----~~~~~~~yv~Q~~~l~~~lT 198 (513)
|+.+ .+=+.+|.++.|.|++|||||||...+ .|....+. ..+++...... .....+||-.++..--
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge---~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~---- 82 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE---PGVFVTFEESPQDIIKNARSFGWDLQKLVDE---- 82 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEecCHHHHHHHHHHcCCCHHHHhhc----
Confidence 4443 456779999999999999999998866 45543221 34444432110 0011223322211000
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCC
Q 010314 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA--RELVMRPHVLFIDEPLY 276 (513)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA--raL~~~P~iLllDEPTs 276 (513)
+++.+ +.. ........+++.+++.+..++... .+|+|++|||.|+ .+|...|+.+
T Consensus 83 --g~l~~---~~~-----~~~~~~~~~~~~~~l~~~l~~i~~------~ls~g~~qRVvIDSl~aL~~~~~~~------- 139 (484)
T TIGR02655 83 --GKLFI---LDA-----SPDPEGQDVVGGFDLSALIERINY------AIRKYKAKRVSIDSVTAVFQQYDAV------- 139 (484)
T ss_pred --CceEE---Eec-----CchhccccccccCCHHHHHHHHHH------HHHHhCCcEEEEeehhHhhhhcCch-------
Confidence 00000 000 000011224556777777777665 8999999999999 6666666544
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHH-------H-HhcCCEEEEEe
Q 010314 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE-------V-FGLFDRICLLS 322 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~-------i-~~~~D~v~vL~ 322 (513)
...+..++++++.+++.|.|+|+++|+.... + ..+||.|+.|+
T Consensus 140 ---~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ---SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5677889999999988899999999875320 2 56899999986
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-09 Score=112.00 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=44.9
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~ 178 (513)
..+|++||+.+.+||+++|+|||||||||||+ +|+..|.. .|+|.++|.+..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~s--Gg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSE--GYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCC--CCEEEECCEECC
Confidence 36899999999999999999999999999999 67777653 248999998753
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-08 Score=106.58 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=91.7
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
.++++.+..+..|.+++++||||+||||++..|++.+.... |. ..++++.++. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRH---GA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhc---CC------------CeEEEEeCCc---cchhHHHHH
Confidence 35666777788899999999999999999999999865431 32 2467777765 357899999
Q ss_pred HHHHHh-cCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 010314 204 YYSALL-QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR-RVRIARELVMRP-----HVLFIDEPLY 276 (513)
Q Consensus 204 ~~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq-Rv~IAraL~~~P-----~iLllDEPTs 276 (513)
.+.+.+ ..+.. ......+..+...+|.+....++. ....+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilGVpv~--~~~~~~Dl~~aL~~L~d~d~VLID------TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILGVPVH--AVKDAADLRLALSELRNKHIVLID------TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhCCCee--ccCCchhHHHHHHhccCCCeEEeC------CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 775543 33321 111223344455666655444443 32222222 234444555554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEEeC
Q 010314 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQ 306 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~ 306 (513)
+ ..+.+.++.....+.+-++.|+-
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeCC
Confidence 7 33445555555445554443543
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-07 Score=106.78 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=48.4
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHh
Q 010314 258 IARELVMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (513)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.++++++|++. ++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhh
Confidence 678888999999999999999 799999999999999988889999888874 4543
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-07 Score=78.64 Aligned_cols=118 Identities=26% Similarity=0.339 Sum_probs=76.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (513)
+|..+.|+||+|+||||+++.|+..+.... .+-+.++...... .......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE----------------EVLDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc----------------cCHHHHH------------
Confidence 367899999999999999999999876531 1234444322100 0000000
Q ss_pred hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------
Q 010314 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV------ 288 (513)
Q Consensus 215 ~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~------ 288 (513)
.... ........+++..+..++++--.+|.+|++||+..-.+.........
T Consensus 51 -----------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -----------------LIIV------GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -----------------hhhh------hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 0000 01123567788888888888888899999999999999988887665
Q ss_pred HHHHHHHcCCeEEEEEe
Q 010314 289 TLKKLASTGCTLLFTIN 305 (513)
Q Consensus 289 ~L~~l~~~g~tvi~t~h 305 (513)
........+..+|+++|
T Consensus 108 ~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 108 LLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHhcCCCEEEEEeC
Confidence 22223345678888777
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.6e-08 Score=92.30 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=56.7
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCC-CceEEEEcC--CcccCCCCCHHH
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMP-YGSYGFVER--ETTLIGSLTVRE 201 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~~-~~~~~yv~Q--~~~l~~~lTV~E 201 (513)
.+=+.+.+++|+.++|+||||||||||+++|+|+++++. |.|.+.+... ... ...++++.| +....+..++.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~---~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE---RIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 344456678999999999999999999999999998864 8999977432 111 233455544 334566778888
Q ss_pred HHHHHH
Q 010314 202 YLYYSA 207 (513)
Q Consensus 202 ~l~~~~ 207 (513)
.+....
T Consensus 92 ~l~~~l 97 (186)
T cd01130 92 LLRSAL 97 (186)
T ss_pred HHHHHh
Confidence 776644
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.7e-08 Score=103.79 Aligned_cols=169 Identities=14% Similarity=0.067 Sum_probs=107.5
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----------CCCceEEEEcCC
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----------MPYGSYGFVERE 190 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-----------~~~~~~~yv~Q~ 190 (513)
+..+++++ +.+.+|++++|+|+||+|||||+++|+|..+++...-|.|-.+|.... ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45799999 999999999999999999999999999998776322355555443221 112368999999
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCch-----hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 191 TTLIGSLTVREYLYYSALLQLPGFF-----CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 191 ~~l~~~lTV~E~l~~~~~~~~~~~~-----~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
...+..+++.+++.+.+.+...... -..-.+..++.+++++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl---------------------------------- 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL---------------------------------- 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHH----------------------------------
Confidence 9999999999999766543211100 0001111112221111
Q ss_pred CCEEEEeCC--CCCCCHHHHHHHHHHHHHHH--H-cC-CeEEEEEeCChHHH-HhcCCEEEEEeCCeEEEE
Q 010314 266 PHVLFIDEP--LYHLDSVSALLMMVTLKKLA--S-TG-CTLLFTINQSSTEV-FGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 266 P~iLllDEP--TsgLD~~~~~~i~~~L~~l~--~-~g-~tvi~t~h~~~~~i-~~~~D~v~vL~~G~iv~~ 329 (513)
.+-|| +.|--+..-..+-+++.+.- + .| .|.+.++.-+.+++ .-++|.+.-+-+|+++..
T Consensus 267 ----~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 267 ----SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred ----hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 12243 23666777777777777752 2 23 46666665543333 235777777889999874
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.2e-08 Score=100.65 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 246 KGLPCGERRRVRIARELVM---------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~---------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
..+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|... |..|++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3599999999999999999 99999999999999999999999999764 678899888763
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-07 Score=98.22 Aligned_cols=171 Identities=15% Similarity=0.072 Sum_probs=100.4
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------------CCCceEEEEc
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-------------MPYGSYGFVE 188 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-------------~~~~~~~yv~ 188 (513)
+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.+...|.... ...+.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~---~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADV---NVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCE---EEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35689999 9999999999999999999999999999988763 66665554211 0112233333
Q ss_pred CCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh--HHhhhhcCCCCCCCCCH-HHHHHHHHHHHHhhC
Q 010314 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPC-GERRRVRIARELVMR 265 (513)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~~~vg~~~~~~~LSG-GqrqRv~IAraL~~~ 265 (513)
+.+. +..+-..-+ . .--.+.|.+...|-+- +.|. |+- -|.+| ++.
T Consensus 226 ~~d~-----~p~~r~~~~-~---------~a~t~AE~frd~G~~Vll~~Ds----------lTr~A~A~R-----Eis-- 273 (440)
T TIGR01026 226 TSDQ-----SPLLRLKGA-Y---------VATAIAEYFRDQGKDVLLLMDS----------VTRFAMAQR-----EIG-- 273 (440)
T ss_pred CCCC-----CHHHHHHHH-H---------HHHHHHHHHHHCCCCEEEEEeC----------hHHHHHHHH-----HHH--
Confidence 3221 111111000 0 0001122222222110 0010 000 01111 111
Q ss_pred CCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCC-------eEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 266 PHVLFIDEP--LYHLDSVSALLMMVTLKKLASTGC-------TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 266 P~iLllDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
+.+.|| +.|+|+.....+.+++.+....+. ||++..|+. ...++|++.-+.+|+++.+....+
T Consensus 274 ---l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~---~dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 ---LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM---NEPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred ---HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC---CcchhhhhccccceEEEEecchhh
Confidence 233565 459999999999999999875555 566655554 245799999999999999887654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-07 Score=96.60 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=41.8
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
+|+++|-.+|++|++||+. |+.++...++ .+..|..|+.|+|..+ +....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3567888999999999997 8888765444 3567999888888764 44566777655
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-07 Score=98.12 Aligned_cols=75 Identities=17% Similarity=0.076 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCC
Q 010314 246 KGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~---------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (513)
.-+|+||+|+++||..|+ .+|+|++||||+++||...+..+++.|.... . +++|+.+. ...+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q-~~it~t~~----~~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---Q-AIVAGTEA----PPGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---c-EEEEcCCC----CCCCc
Confidence 348999999999999999 8999999999999999999999998886532 2 44443332 45799
Q ss_pred EEEEEeCCeEEE
Q 010314 317 RICLLSNGNTLF 328 (513)
Q Consensus 317 ~v~vL~~G~iv~ 328 (513)
+++.+.+|++.-
T Consensus 334 ~~~~~~~~~~~~ 345 (349)
T PRK14079 334 LTLRIEAGVFTP 345 (349)
T ss_pred eEEEEeccEecC
Confidence 999999988743
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.4e-08 Score=91.73 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=62.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHH-HhcCCCchh
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFC 216 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~ 216 (513)
+++|.||||||||||+++|++++. . |.+.+-+ +++.+ ..++..+...... ....+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-~----~~~~v~~--------------~D~~~-~~~~~~~~~~~~~~~~~~~~~-- 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-N----PKVVIIS--------------QDSYY-KDLSHEELEERKNNNYDHPDA-- 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-C----CCeEEEE--------------ecccc-cccccccHHHhccCCCCCCCc--
Confidence 589999999999999999999872 1 3333322 22211 1122222211110 0111111
Q ss_pred hHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010314 217 QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (513)
Q Consensus 217 ~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~ 280 (513)
...+...+.+..+...+..+. .....|.|++++..+ .+.+|+++|+|+|+.+.++
T Consensus 59 ~~~~~~~~~l~~l~~~~~~~~------p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 59 FDFDLLISHLQDLKNGKSVEI------PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccHHHHHHHHHHHHCCCCEec------cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 111233445554444322222 234778888776655 5788999999999999986
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.6e-08 Score=95.61 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=26.2
Q ss_pred eeee-eeEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 010314 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA 157 (513)
Q Consensus 126 L~~v-s~~i~~Ge~~aliGpsGsGKSTLl~~L~ 157 (513)
|+.+ .+=+++|++++|.|++|+|||||+..++
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 4443 4567899999999999999999988655
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-07 Score=106.19 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCE
Q 010314 247 GLPCGERRRVRIARELVM--RPHVLFIDEP---LYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~--~P~iLllDEP---TsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~ 317 (513)
++|.=+.....++..|-. +++++|+||| |+.+|.. ...+..++.+.+. +.++|++||.. ++..++++
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--aia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--SIAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--HHHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 677777777777777655 8999999999 8889843 3455666777665 58889988883 67777765
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.5e-07 Score=105.14 Aligned_cols=79 Identities=27% Similarity=0.271 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc
Q 010314 243 CYMKGLPCGERRRVRIARELV------MR--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 243 ~~~~~LSGGqrqRv~IAraL~------~~--P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (513)
..+..|||||+=.++||-+|+ .+ -++|||||||..||+.....+++.|..+...+.+|+++||++ ++.+.
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 456789999999888777765 45 699999999999999999999999999988899999988885 67889
Q ss_pred CCEEEEEeC
Q 010314 315 FDRICLLSN 323 (513)
Q Consensus 315 ~D~v~vL~~ 323 (513)
+|.++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998864
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.5e-07 Score=95.31 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=65.0
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC-
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSE- 178 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~- 178 (513)
...+..++++..|.. +..+++.++ .+.+|+.++|+|+||||||||+++|+++.+++. |.|.+.|+ +..
T Consensus 137 p~~~~r~~v~~~l~T----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~---gvv~liGergrev~e 208 (450)
T PRK06002 137 PPAMTRARVETGLRT----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDT---VVIALVGERGREVRE 208 (450)
T ss_pred CCCeEeecceEEcCC----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCe---eeeeecccCCccHHH
Confidence 356889999988853 357888886 899999999999999999999999999988864 88888653 211
Q ss_pred --------CCCceEEEEcCCcc
Q 010314 179 --------MPYGSYGFVERETT 192 (513)
Q Consensus 179 --------~~~~~~~yv~Q~~~ 192 (513)
...+.++|++|.+.
T Consensus 209 ~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 209 FLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HhHHHHHHhhCCeEEEEEcCCC
Confidence 11246899999764
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-05 Score=92.75 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=42.6
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 261 ELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..+++++|.+.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456899999999999999 89999999999999888889999888764
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.6e-07 Score=108.55 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeC
Q 010314 245 MKGLPCGERRRVR----IARE--------LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306 (513)
Q Consensus 245 ~~~LSGGqrqRv~----IAra--------L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~ 306 (513)
..+||||||||++ +|++ +..+|++|+|||||+|||+.+...++++|.++ |.++|++++.
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 4689999999996 5655 55899999999999999999999999999887 6788886654
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-05 Score=93.05 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=41.5
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 262 LVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.++++++|++.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 78899999999999888889999888764
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.4e-07 Score=83.93 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChH-HHHhcCCEEEEEeCC
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST-EVFGLFDRICLLSNG 324 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~-~i~~~~D~v~vL~~G 324 (513)
|+-.|..||..+..+|+.+..+| +.|||.....+.+.+.++...|.+||+.+|...+ .+..+||.++++..+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988887 8899999999999998886566788887776531 256789999887643
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-06 Score=101.69 Aligned_cols=44 Identities=27% Similarity=0.335 Sum_probs=35.9
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 010314 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (513)
Q Consensus 129 vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (513)
+++....+++++|+|++|+|||||++++.+.+... ..|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeec
Confidence 45667789999999999999999999997765442 358888875
|
syringae 6; Provisional |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7e-07 Score=84.17 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
+|++++|+|+||||||||+++|+|++.+ +.++|.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~ 36 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDD 36 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcc
Confidence 6999999999999999999999998754 4666654
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.1e-05 Score=77.56 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=31.2
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
..|+.+.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467777777889999999999999999999887654
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.3e-06 Score=89.22 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=68.9
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC--------CCCceEEEE---
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSE--------MPYGSYGFV--- 187 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~--------~~~~~~~yv--- 187 (513)
+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+... .|.|.+.|+ +.. ......+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~--~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD--VNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCC--ceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 34689988 9999999999999999999999999999885421 367776552 210 011123444
Q ss_pred --cCCc--ccCCCCCHHHHHHHHHHhcCCC--chhhHHHHHHHHHHHcCCh
Q 010314 188 --ERET--TLIGSLTVREYLYYSALLQLPG--FFCQRKNVVEDAIHAMSLS 232 (513)
Q Consensus 188 --~Q~~--~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~~~L~ 232 (513)
+|++ .+.+.+ +...+....+.+... ...+...++.++++.++|.
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 7765 344444 444443332222111 1134567788999999994
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.6e-06 Score=93.22 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=70.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhc
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-----~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (513)
.+.++|+||||+|||||+++|.+..++.. ...+-|.++|.......+ .+ .+-.+. .
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~---------------~i-~~~llg---~ 235 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR---------------EV-TNPLLG---S 235 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH---------------HH-hHHhcC---C
Confidence 45799999999999999999998865421 001335555532210000 00 011110 0
Q ss_pred CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 010314 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (513)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L 290 (513)
. . ........+.++.+|+.+..+..+ ..+||| +||||| +..||+..+..+++.|
T Consensus 236 ~-~--~~~~~~a~~~l~~~gl~~~~~g~v------~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~L 289 (615)
T TIGR02903 236 V-H--DPIYQGARRDLAETGVPEPKTGLV------TDAHGG----------------VLFIDE-IGELDPLLQNKLLKVL 289 (615)
T ss_pred c-c--HHHHHHHHHHHHHcCCCchhcCch------hhcCCC----------------eEEEec-cccCCHHHHHHHHHHH
Confidence 0 0 111223455677888876665544 478888 999999 8999999999999998
Q ss_pred HH
Q 010314 291 KK 292 (513)
Q Consensus 291 ~~ 292 (513)
++
T Consensus 290 e~ 291 (615)
T TIGR02903 290 ED 291 (615)
T ss_pred hh
Confidence 75
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.6e-06 Score=66.04 Aligned_cols=37 Identities=43% Similarity=0.464 Sum_probs=29.5
Q ss_pred eeeeeeEEeC-CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 126 VKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 126 L~~vs~~i~~-Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+++..+.+.+ |.+++|.|+||||||||+++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3445666665 679999999999999999999876544
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=6e-06 Score=69.17 Aligned_cols=47 Identities=28% Similarity=0.376 Sum_probs=36.5
Q ss_pred CCCCHHHH-HHHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010314 246 KGLPCGER-RRVRIAREL------VM------RPHVLFIDEPLYHLDSVSALLMMVTLKK 292 (513)
Q Consensus 246 ~~LSGGqr-qRv~IAraL------~~------~P~iLllDEPTsgLD~~~~~~i~~~L~~ 292 (513)
.++||||+ ..+.+|.++ -. .|++++||||+++||+.....++++|++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 48999999 444444333 23 3799999999999999999999999874
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-05 Score=84.35 Aligned_cols=72 Identities=22% Similarity=0.147 Sum_probs=42.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----ceEEEEcCCcccCCCCCHHHHHHH
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----GSYGFVERETTLIGSLTVREYLYY 205 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~----~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (513)
++|.+++|.||+||||||+|++|++.+.+.....+.|.....+.+... ...+++.|...--...+..+.+.-
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHH
Confidence 489999999999999999999999987432101135554443332211 124567775421112344555543
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2e-05 Score=87.11 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=47.9
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeC--------------ChHHHHhcCCEEEEEeCCeE-
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ--------------SSTEVFGLFDRICLLSNGNT- 326 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~--------------~~~~i~~~~D~v~vL~~G~i- 326 (513)
|..+|+++++||.-..-| ++++..++..|..++.|+|- ....+...+|+|+.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~ 393 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEVS 393 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEEE
Confidence 678999999999985332 44555555557778888881 23467789999999999999
Q ss_pred -EEEeCh
Q 010314 327 -LFFGET 332 (513)
Q Consensus 327 -v~~G~~ 332 (513)
++.+..
T Consensus 394 ~v~~~~~ 400 (602)
T PRK13764 394 KVYDLEF 400 (602)
T ss_pred EEEeeee
Confidence 777663
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.7e-05 Score=71.92 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=36.0
Q ss_pred CCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 010314 247 GLPCGERRRVR--IARELVM-RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296 (513)
Q Consensus 247 ~LSGGqrqRv~--IAraL~~-~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~ 296 (513)
.+++|+++++. +++.+-. +++++ |+|++|.....++++.|.++.++
T Consensus 147 l~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 147 KLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 68999999987 5555543 34433 99999999999999999987654
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.2e-06 Score=87.19 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=54.5
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---------CCCceEEEEcCCc
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---------MPYGSYGFVERET 191 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---------~~~~~~~yv~Q~~ 191 (513)
+..+++++ +.+.+|+.++|+|+||+|||||+++|++...++..+.|.|-.+|++.. ....++++|+...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 45799999 999999999999999999999999999998776445588888887531 1124567776543
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.5e-05 Score=70.18 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCeEEEEEeCC
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQS 307 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~t~h~~ 307 (513)
+..........++.+|++||.-.. ++.....+.+.+..+.. .+..+|++++..
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 344445566778999999998765 56667778888887753 467788877754
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.2e-06 Score=75.29 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHh-----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010314 247 GLPCGERRRVRIARELV-----MRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~-----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l 293 (513)
.++++++++........ ..|+++ |+|++|.....++++.|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 57889888877666533 345555 99999999999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.6e-05 Score=72.73 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=44.1
Q ss_pred hCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh--------HHHHhcCCEEEEEe
Q 010314 264 MRPHVLFIDEPLY------HLDSVSALLMMVTLKKLASTGCTLLFTINQSS--------TEVFGLFDRICLLS 322 (513)
Q Consensus 264 ~~P~iLllDEPTs------gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~--------~~i~~~~D~v~vL~ 322 (513)
.+++++++| +.+ +.|...+..+.++++.+++.|.|+++++|... ..+..+||.|++|+
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 368899999 444 44555677888899999888999999888531 23577899999994
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.2e-05 Score=80.32 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=42.8
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHH-HcCCeEEEEEeCChH-------HHHhcCCEEEEEeCCe
Q 010314 264 MRPHVLFIDEPLYHL----D-----SVSALLMMVTLKKLA-STGCTLLFTINQSST-------EVFGLFDRICLLSNGN 325 (513)
Q Consensus 264 ~~P~iLllDEPTsgL----D-----~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~-------~i~~~~D~v~vL~~G~ 325 (513)
.+|+++++|.-++=. + ....++++..|.+++ +.|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 223455666677775 459999998775432 2567899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=84.77 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=48.0
Q ss_pred ceEEEEeEEEEEeccccccceeee-----------eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVK-----------SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
..+.|+||++.|++ .+.+|+ |+.+.+.+|+.++|+||+|||||||++.|+..+..
T Consensus 129 ~ri~Fe~LTf~YP~----er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 129 NRVLFENLTPLYPN----ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCeEEEEeeecCCC----ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 36899999999974 235786 99999999999999999999999999999987643
|
Members of this family differ in the specificity of RNA binding. |
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.3e-05 Score=82.48 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=43.3
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
+.++++++ +.+.+|+.++|+|+||+|||||+++|+|...++. |.+..-|+
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADV---NVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCE---EEEEEEec
Confidence 34689999 9999999999999999999999999999988763 76666553
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.2e-06 Score=85.82 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=52.6
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC--CCCCceEEEEcCCcccCCC
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS--EMPYGSYGFVERETTLIGS 196 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~--~~~~~~~~yv~Q~~~l~~~ 196 (513)
++.+.-.+.+|++++|+|+||+|||||+++|+|..++. +|+|.+++... ....+.+.+++|...++..
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt 254 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT 254 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC
Confidence 44555567789999999999999999999999998876 49999986431 2223568888888776643
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.1e-05 Score=79.22 Aligned_cols=67 Identities=22% Similarity=0.245 Sum_probs=42.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeE----EEECCEeCCC-CCceEEEEcCCcccCCCCCHHHHHHH
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE----VFVNGAKSEM-PYGSYGFVERETTLIGSLTVREYLYY 205 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~----I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (513)
+..+++|.||||||||||+++|++++++.+ |. |.+++..... .....+++.+.. ....+++.+.+.+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~---g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~ 103 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDG---ELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAAL 103 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhcc---CCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHH
Confidence 567999999999999999999999998864 76 4444421110 012235555432 2344566555544
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.2e-06 Score=86.31 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=42.3
Q ss_pred eeeeeeeeEE---eCCcE-----EEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 124 KVVKSSNGYA---LPGTM-----TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 124 ~iL~~vs~~i---~~Ge~-----~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
.++++++..+ ++|+. +||.|+||||||||++.|.+++++.+...|.|.++|..
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4677777776 56776 99999999999999999999987643235888888754
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.4e-05 Score=74.84 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=37.7
Q ss_pred EEEEeEEEEEeccc-cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 106 VVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 106 l~~~~ls~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-.++++.+++.... ......|.++++ ++.|+.+.|+||+|+|||+|+.+|+..
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 34555555553221 011135677788 999999999999999999999999765
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.2e-05 Score=85.62 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=51.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
.++.++++..+. .+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.+.+.|.
T Consensus 129 ~~~r~~v~~~l~----tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~---~vi~~iGe 191 (433)
T PRK07594 129 AMVRQPITQPLM----TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS---NVLVLIGE 191 (433)
T ss_pred ceeccCHhheeC----CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCE---EEEEEECC
Confidence 455566655553 346799999 9999999999999999999999999999988763 77777664
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.4e-06 Score=83.94 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=49.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------CCceEEEEcCCcccCCCCCHHHH
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----------PYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----------~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
.+|++++|+||||+||||++..|++.+.+.+ |+|.+.+.+... ....+.+++|.....|..++.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g---~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG---KKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 4789999999999999999999999987653 788887655311 12346777776555555556666
Q ss_pred HHH
Q 010314 203 LYY 205 (513)
Q Consensus 203 l~~ 205 (513)
+..
T Consensus 189 l~~ 191 (318)
T PRK10416 189 IQA 191 (318)
T ss_pred HHH
Confidence 543
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=78.14 Aligned_cols=67 Identities=21% Similarity=0.322 Sum_probs=44.2
Q ss_pred HHhhCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHH----cCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 261 ELVMRPHVLFIDE----------PLYHLDSVSALLMMVTLKKLAS----TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 261 aL~~~P~iLllDE----------PTsgLD~~~~~~i~~~L~~l~~----~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|....|.|||+|| +.++.|...+..+.++|..+.. .+..||+++|++. .+ |.. ++..|++
T Consensus 234 A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d-~L----DpA-llR~GRf 307 (398)
T PTZ00454 234 ARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD-TL----DPA-LLRPGRL 307 (398)
T ss_pred HHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch-hC----CHH-HcCCCcc
Confidence 3446799999999 5567888888888888887742 2556888888763 22 222 3445553
Q ss_pred ---EEEeChH
Q 010314 327 ---LFFGETL 333 (513)
Q Consensus 327 ---v~~G~~~ 333 (513)
++.+.|+
T Consensus 308 d~~I~~~~P~ 317 (398)
T PTZ00454 308 DRKIEFPLPD 317 (398)
T ss_pred cEEEEeCCcC
Confidence 5565553
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.1e-05 Score=77.32 Aligned_cols=28 Identities=43% Similarity=0.703 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
++|++++|+||||||||||+++|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4899999999999999999999999875
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.1e-05 Score=76.56 Aligned_cols=35 Identities=34% Similarity=0.558 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
|++++|+||||||||||+++|++...+ .+.+++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~------~~~~~~~~ 36 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT------QLLVAHRY 36 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC------eEEEcCEE
Confidence 789999999999999999999998643 46666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 513 | ||||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-14 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-14 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-14 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-13 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-12 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-10 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 7e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 7e-08 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 8e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-07 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 4e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 5e-07 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 6e-06 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-06 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-06 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 7e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 9e-06 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-05 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-05 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-05 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-05 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-05 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-05 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 5e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-04 |
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 2e-23
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 35/196 (17%)
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------AKSEMPYGSYGFVERETTL 193
GP +GK+T LR I+ + S+ G V V G + + ++ E
Sbjct: 48 GPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEVRKLI-----SYLPEEAGA 99
Query: 194 IGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252
++ EYL + + + + +VE A L + + Y KG+
Sbjct: 100 YRNMQGIEYLRFVAGFYASSS--SEIEEMVERATEIAGLGEKIKDRVST--YSKGM---- 151
Query: 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST--- 309
R++ IAR L++ P + +DEP LD ++A + LK+ + G T+L + +
Sbjct: 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS-----SHNM 206
Query: 310 -EVFGLFDRICLLSNG 324
EV L DRI L+ NG
Sbjct: 207 LEVEFLCDRIALIHNG 222
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 2e-21
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 42/221 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET-TL 193
G ++ G +GK+TLL + P ++ G V + G G G+
Sbjct: 46 KGDKWILYGLNGAGKTTLLNILNAYEPATS---GTVNLFG----KMPGKVGYSAETVRQH 98
Query: 194 IG------------SLTVREYLYYSALLQLPGFFCQR----KNVVEDAIHAMSLSDYANK 237
IG V + + S + G + +N + + +S A +
Sbjct: 99 IGFVSHSLLEKFQEGERVIDVVI-SGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ 157
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 297
IG L GE++RV IAR L+ +P VL +DEP LD ++ ++ L L+ +
Sbjct: 158 YIGY------LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211
Query: 298 --CTLLFTINQSST----EVFGLFDRICLLSNGNTLFFGET 332
+++ T E+ F +I LL +G ++ G
Sbjct: 212 PTLAMIYV-----THFIEEITANFSKILLLKDGQSIQQGAV 247
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 2e-21
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 51/213 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY---------G 185
G + ++GP +GKSTLL +AG G + G P ++
Sbjct: 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQ----PLEAWSATKLALHRA 76
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG---GH 242
++ ++ T + V YL L Q R ++ D A++L D + G
Sbjct: 77 YLSQQQTPPFATPVWHYL---TLHQHDK---TRTELLNDVAGALALDDKLGRSTNQLSG- 129
Query: 243 CYMKGLPCGERRRVRIARELV-------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295
GE +RVR+A ++ +L +DEP+ LD + L L+
Sbjct: 130 --------GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 296 TGCTLLFT---INQSSTEVFGLF-DRICLLSNG 324
G ++ + +N + R LL G
Sbjct: 182 QGLAIVMSSHDLNHTL-----RHAHRAWLLKGG 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 2e-21
Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL+ Y V++ G + GP GK+TLL+ I+ L G
Sbjct: 14 RDLS------VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---G 64
Query: 169 EVFVNG-----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL-QLPGFFCQRKNVV 222
E+ NG K ++ F+ E + ++V +YL A L + KN +
Sbjct: 65 EIIYNGVPITKVKGKI-----FFLPEEIIVPRKISVEDYLKAVASLYGVKV----NKNEI 115
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
DA+ ++ + D KL L G RRV++A L++ + +D+P+ +D S
Sbjct: 116 MDALESVEVLDLKKKL-------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 283 ALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
++ ++ ++ G ++ + E D L +
Sbjct: 169 KHKVLKSILEILKEKGIVIISS-----REELSYCDVNENLHKYS 207
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-20
Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 31/226 (13%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K++ +T+ GK Y +++ N + G +I+GP SGK+TLLRAI+G LP+S G
Sbjct: 5 KNVGITLSGKG-YERFSLENIN-LEVNGEKVIILGPNGSGKTTLLRAISGLLPYS----G 58
Query: 169 EVFVNGAK-SEMPYGSYGFVERETTLIGS----LTVREYLYYSALLQLPGFFCQRKNVVE 223
+F+NG + ++ + T L + +TV + +Y +L G +++
Sbjct: 59 NIFINGMEVRKIR-NYIRYS---TNLPEAYEIGVTVNDIVYL--YEELKGL---DRDLFL 109
Query: 224 DAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
+ + A+ L + + + L G+ VR + L +P ++ +DEP ++D+
Sbjct: 110 EMLKALKLGEEILRR------KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328
++ +K+ +L T + + GN L
Sbjct: 164 RHVISRYIKEYGKE--GILVTHELD--MLNLYKEYKAYFLVGNRLQ 205
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 4e-20
Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 59/243 (24%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
+ +++ L + G + ++G GKSTLL + G
Sbjct: 16 AENFLFQQLNFDLN------------------KGDILAVLGQNGCGKSTLLDLLLGIHRP 57
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY-LY----YSALLQLPGFFCQ 217
G++ V Y S GFV + + + +V + L + P
Sbjct: 58 IQ---GKIEV--------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPK---S 103
Query: 218 R-KNVVEDAIHAMSLSDYANKLIG---GHCYMKGLPCGERRRVRIARELVMRPHVLFIDE 273
V A+ ++L+ A + G G+R+ + IAR + ++ +DE
Sbjct: 104 HDYQVAMQALDYLNLTHLAKREFTSLSG---------GQRQLILIARAIASECKLILLDE 154
Query: 274 PLYHLDSVSALLMMVTLKKLAST-GCTLLFT---INQSSTEVFGLFDRICLLSNGNTLFF 329
P LD + +++ L LA + T++FT NQ V + ++ LL N F
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ----VVAIANKTLLL-NKQNFKF 209
Query: 330 GET 332
GET
Sbjct: 210 GET 212
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 3e-17
Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 37/194 (19%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK- 176
++ D + NG A G + I+GP GK+T R + G + G V
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEKQIL 332
Query: 177 -------SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM 229
G TV++YL E+ +
Sbjct: 333 SYKPQRIFPNYDG---------------TVQQYL----ENASKDALSTSSWFFEEVTKRL 373
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
+L + L GE +++ IA L + +D+P +LD ++
Sbjct: 374 NLHRLLES------NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKA 427
Query: 290 LKKLA-STGCTLLF 302
+K++
Sbjct: 428 IKRVTRERKAVTFI 441
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 35/223 (15%)
Query: 120 RYSDKVVKSSNGYALP----GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNG 174
RY K + LP T+ ++G GK+T+L+ +AG + P+ +V +
Sbjct: 8 RYKVNGFK---LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDE 64
Query: 175 AKSEMPYGSYGFVERE--TTLIGSL-------TVREYLYYSALLQLPGFFCQRKNVVEDA 225
+E + + + ++L + L + ++
Sbjct: 65 VLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI--DERGKKDEV 122
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+++++ NK L G +R+ +A L+ V D+P +LD +
Sbjct: 123 KELLNMTNLWNK------DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176
Query: 286 MMVTLKKLASTGCTLLFTINQSST----EVFGLFDRICLLSNG 324
M +++L ++ + L D I ++
Sbjct: 177 MAKAIRELL-KNKYVIV-----VDHDLIVLDYLTDLIHIIYGE 213
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 1e-16
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 24/229 (10%)
Query: 76 PSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKG-KRRYSDKVVKSSNGYAL 134
+ + +L +A + K+ D V+ G
Sbjct: 317 FLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFS 376
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
+ V+MG +GK+TL++ +AG L G+ S P ++
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDE---GQDIPKLNVSMKP--------QKIAPK 425
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
TVR+ + Q D + + + D ++ ++ L GE +
Sbjct: 426 FPGTVRQLFFKKIRGQF-----LNPQFQTDVVKPLRIDDIIDQ------EVQHLSGGELQ 474
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF 302
RV I L + + IDEP +LDS ++ +++ T
Sbjct: 475 RVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 32/209 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY------GEVFVNGAKSEMPYGSYGFVE 188
PG + ++G GKST L+ +AG+ + + E+ SE+ +E
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 189 RE---------TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLI 239
+ I LL+L + V+ I + L + +
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME--KSPEDVKRYIKILQLENVLKR-- 217
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
++ L GE +R I V V DEP +LD L ++ L +
Sbjct: 218 ----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKY 273
Query: 300 LLFTINQSST----EVFGLFDRICLLSNG 324
++ + L D +C++
Sbjct: 274 VIC-----VEHDLSVLDYLSDFVCIIYGV 297
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-16
Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 25/189 (13%)
Query: 116 KGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175
+ + Y ++ G G + I+GP GK+T ++ +AG + G+V +
Sbjct: 362 RLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEWDLT 418
Query: 176 KS-EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY 234
+ + Y + TV E L +L + + + + D
Sbjct: 419 VAYKPQYIKAEY---------EGTVYELLSKIDSSKLN-----SNFYKTELLKPLGIIDL 464
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
++ ++ L GE +RV IA L+ + +DEP +LD L + ++ L
Sbjct: 465 YDR------NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518
Query: 295 -STGCTLLF 302
T L
Sbjct: 519 EKNEKTALV 527
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 33/200 (16%)
Query: 120 RYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHS---ARMYGEVFVNGA 175
RY + G + I+GP +GK+T ++ +AG+L + + +
Sbjct: 100 RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159
Query: 176 K-SEMPY-------GSYGFVERE--TTLIGSLT---VREYLYYSALLQLPGFFCQRKNVV 222
+ +E+ G V + L+ VRE L
Sbjct: 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----------DEVGKF 209
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
E+ + + L + ++ + L GE +RV IA L+ + H F DEP +LD
Sbjct: 210 EEVVKELELENVLDR------ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 283 ALLMMVTLKKLASTGCTLLF 302
L + +++LA+ G +L
Sbjct: 264 RLKVARVIRRLANEGKAVLV 283
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 32/228 (14%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVV-WKDLTVTIKGKRRYSDKVVKSSNGYALPG 136
L N P +I ++V + L + Y ++ G G
Sbjct: 259 LKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLV------KDYGSFRLEVEPGEIKKG 312
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERETTLIG 195
+ I+GP GK+T ++ +AG + G++ + + + Y +
Sbjct: 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEWDLTVAYKPQYIKADY--------- 360
Query: 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
TV E L ++ + + + + D ++ + L GE +R
Sbjct: 361 EGTVYELL-----SKIDASKLNSNFYKTELLKPLGIIDLYDR------EVNELSGGELQR 409
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF 302
V IA L+ + +DEP +LD L + ++ L T L
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 457
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 44/221 (19%), Positives = 80/221 (36%), Gaps = 38/221 (17%)
Query: 120 RYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGA 175
RY + G + I+GP +GKST ++ +AG+L + +
Sbjct: 30 RYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAF 89
Query: 176 K-SEMPYGSYGFVERE---------TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDA 225
+ +E+ E LI + + LL+ +E+
Sbjct: 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIE---LLKKA----DETGKLEEV 142
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+ A+ L + + ++ L GE +RV IA L+ F DEP +LD L
Sbjct: 143 VKALELENVLER------EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLN 196
Query: 286 MMVTLKKLASTGCTLLFTINQSSTE-----VFGLFDRICLL 321
+++L+ G ++L E + L D I ++
Sbjct: 197 AARAIRRLSEEGKSVLV------VEHDLAVLDYLSDIIHVV 231
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 44/219 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE-R---- 189
G +T I+G GKSTL + G L S+ G + + + Y G ++ R
Sbjct: 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSS---GRILFDN--KPIDYSRKGIMKLRESIG 87
Query: 190 ------ETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANK----L 238
+ L + +V + + + A+ ++LP +++ V++A+ + +K L
Sbjct: 88 IVFQDPDNQLFSA-SVYQDVSFGAVNMKLPEDEIRKR--VDNALKRTGIEHLKDKPTHCL 144
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTG 297
G +++RV IA LVM P VL +DEP LD + +M L ++ G
Sbjct: 145 SFG----------QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 298 CTLLFTINQSST----EVFGLFDRICLLSNGNTLFFGET 332
T++ +T V D + ++ G + G
Sbjct: 195 ITII-----IATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 2e-13
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 29/214 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY--GSYGFV--ERET 191
G ++ G SGKSTLL+ +AG + ++ G+V +G + + + G E
Sbjct: 33 GECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDGERKKGYEIRRNIGIAFQYPED 89
Query: 192 TLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHA--MSLSDYANK----LIGGHCY 244
V + + ++ V+ A+ + + ++ L GG
Sbjct: 90 QFFAE-RVFDEVAFAVKNFYPDRDPVPL---VKKAMEFVGLDFDSFKDRVPFFLSGG--- 142
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304
E+RRV IA +V P +L +DEPL LD ++ ++K + G T++ I
Sbjct: 143 -------EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL-I 194
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
+ V DR+ +L G +F G + L+
Sbjct: 195 SHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 6e-13
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 25/193 (12%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SEMPYG-SYGFVERETTLIGS 196
V++GP +GKS L IAG + GEV +NGA P GFV ++ L
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256
L+V + Y L + +R V + + ++ ++ L GER+RV
Sbjct: 85 LSVYRNIAY-GLRNVER--VERDRRVREMAEKLGIAHLLDR------KPARLSGGERQRV 135
Query: 257 RIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEV 311
+AR LV++P +L +DEPL +D +M L+ + +L T + E
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVD---LKTKGVLMEELRFVQREFDVPILHVTHDLI--EA 190
Query: 312 FGLFDRICLLSNG 324
L D + ++ NG
Sbjct: 191 AMLADEVAVMLNG 203
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 6e-13
Identities = 54/188 (28%), Positives = 77/188 (40%), Gaps = 41/188 (21%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAK---------SEMPYGS 183
G I+G + SGKSTLL I G L P G+VF+ G + S +
Sbjct: 29 KGEFVSIIGASGSGKSTLLY-ILGLLDAPTE----GKVFLEGKEVDYTNEKELSLLRNRK 83
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFC-----QRKNVVEDAIHAMSLSDYA--- 235
GFV + LI LT E + +P + K E + + L D
Sbjct: 84 LGFVFQFHYLIPELTALENV------IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK 137
Query: 236 -NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
+L GG E++RV IAR L P +LF DEP +LDS + +M K+
Sbjct: 138 PYELSGG----------EQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 295 STGCTLLF 302
G +++
Sbjct: 188 EGGTSIVM 195
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 8e-12
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 38/189 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAK-SEMPY--------GS 183
G IMGP+ SGKST+L I G L P GEV+++ K +++
Sbjct: 30 EGEFVSIMGPSGSGKSTMLN-IIGCLDKPTE----GEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 184 YGFVERETTLIGSLTVREY----LYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-----Y 234
GFV ++ LI LT E L + + G +R+ + + L +
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG--EERRKRALECLKMAELEERFANHK 142
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL- 293
N+L GG +++RV IAR L P ++ D+P + LDS + +M LKKL
Sbjct: 143 PNQLSGG----------QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192
Query: 294 ASTGCTLLF 302
G T++
Sbjct: 193 EEDGKTVVV 201
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 55/235 (23%)
Query: 113 VTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ I+ R++ + + + + G VI+GP +GK+ L IAG + G +
Sbjct: 2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRIL 58
Query: 172 VNGAKSEM----PYGSYGFVERETTLIGS----------LTVREYLYYSALLQLPGFFCQ 217
++G ++ P + + I + V++ L + +++ +
Sbjct: 59 LDGK--DVTDLSPE------KHD---IAFVYQNYSLFPHMNVKKNLEFG--MRMKKI--K 103
Query: 218 RKNVVEDAIHAMSLSDYANKLIG---GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
V D + + ++ G GE++RV +AR LV P +L +DEP
Sbjct: 104 DPKRVLDTARDLKIEHLLDRNPLTLSG---------GEQQRVALARALVTNPKILLLDEP 154
Query: 275 LYHLDSVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
L LD L L T+L T +Q+ E + DRI ++ +G
Sbjct: 155 LSALD---PRTQENAREMLSVLHKKNKLTVLHITHDQT--EARIMADRIAVVMDG 204
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 39/208 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFV---ERET 191
PG + I+G + GK+TLLR +AG + GE+ ++G + + + ER
Sbjct: 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDS---GEISLSG---KTIFSKNTNLPVRERR- 81
Query: 192 TLIGS----------LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG 241
+G LTV + Y L G Q + +E + +S+ A +
Sbjct: 82 --LGYLVQEGVLFPHLTVYRNIAY-GLGNGKGRTAQERQRIEAMLELTGISELAGR---- 134
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKKL-ASTG 297
Y L G+++R +AR L P ++ +DEP LD L + + + G
Sbjct: 135 --YPHELSGGQQQRAALARALAPDPELILLDEPFSALD---EQLRRQIREDMIAALRANG 189
Query: 298 CTLLF-TINQSSTEVFGLFDRICLLSNG 324
+ +F + ++ E DRI ++ G
Sbjct: 190 KSAVFVSHDRE--EALQYADRIAVMKQG 215
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 51/236 (21%), Positives = 98/236 (41%), Gaps = 44/236 (18%)
Query: 112 TVTIKG-KRRYSDKVVKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSAR 165
+ +K + + V + + + G I+GP+ +GK+T +R IAG L P +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGE 61
Query: 166 MY-GEVFVNGAKSE----------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214
+Y + V M + ++ L +LT E + + L
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWA-------LYPNLTAFENIAFP--LTNMKM 112
Query: 215 F-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDE 273
+ + VE+ + + N + + L +++RV +AR LV P +L +DE
Sbjct: 113 SKEEIRKRVEEVAKILDIHHVLNH------FPRELSGAQQQRVALARALVKDPSLLLLDE 166
Query: 274 PLYHLDSVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
P +LD A + +K++ + G TLL + + ++F + DR+ +L G
Sbjct: 167 PFSNLD---ARMRDSARALVKEVQSRLGVTLLVVSHDP--ADIFAIADRVGVLVKG 217
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 7e-09
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 32/230 (13%)
Query: 110 DLTVTIKG-KRRYSDK--VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARM 166
+T+ G ++ Y V+ + G M ++GP+ SGK+T+LR IAG +
Sbjct: 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK-- 69
Query: 167 YGEVFVNGAK-SEMPYGSY----GFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKN 220
G+V++ G + +++P G V + L +TV + + + L+ +
Sbjct: 70 -GDVWIGGKRVTDLP--PQKRNVGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDA 124
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V + + M L YAN+ + G G+++RV +AR L RP VL DEP +D
Sbjct: 125 RVRELLRFMRLESYANRFPHE---LSG---GQQQRVALARALAPRPQVLLFDEPFAAID- 177
Query: 281 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGN 325
+ + ++++ G T +F T +Q E + DR+ +L GN
Sbjct: 178 --TQIRRELRTFVRQVHDEMGVTSVFVTHDQE--EALEVADRVLVLHEGN 223
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 2e-08
Identities = 48/223 (21%), Positives = 79/223 (35%), Gaps = 46/223 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVER---- 189
G +T+I+GP SGKSTL+ I G L G V+ +
Sbjct: 32 KGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNKE--PAELYHYGIVR 86
Query: 190 ---ETTLIGSLTVRE-----------YLYYSALLQLPGFFCQRKNVVEDAIHA---MSLS 232
+ +TV E S + + + +VE A + LS
Sbjct: 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFY--KKWIPKEEEMVEKAFKILEFLKLS 144
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
++ G L G+ + V I R L+ P ++ +DEP+ + A + + +
Sbjct: 145 HLYDRKAGE------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 293 LASTGCTLLFTINQSSTE-----VFGLFDRICLLSNGNTLFFG 330
L + G T L I E V D + ++ NG + G
Sbjct: 199 LKAKGITFLI-I-----EHRLDIVLNYIDHLYVMFNGQIIAEG 235
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 34/183 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET--- 191
G + V++GP+ SGKST LR + GE+ ++G + + V E
Sbjct: 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGINLKAKDTNLNKVREEVGMV 105
Query: 192 ----TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS---LSDYANKLIGGHCY 244
L +TV + A +++ + R+ A+ + L D A+ Y
Sbjct: 106 FQRFNLFPHMTVLNNITL-APMKVRKW--PREKAEAKAMELLDKVGLKDKAHA------Y 156
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL-LMMV-----TLKKLASTGC 298
L G+ +RV IAR L M P ++ DEP SAL MV +K+LA+ G
Sbjct: 157 PDSLSGGQAQRVAIARALAMEPKIMLFDEP------TSALDPEMVGEVLSVMKQLANEGM 210
Query: 299 TLL 301
T++
Sbjct: 211 TMV 213
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 4e-08
Identities = 37/196 (18%), Positives = 73/196 (37%), Gaps = 31/196 (15%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL + ++ + I GP GKSTL+RAIA ++ G
Sbjct: 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG-----QVDG 488
Query: 169 EVFVNGAKSEMPYGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIH 227
++ +VE + +V ++++ S + K ++D +
Sbjct: 489 FPTQEECRT-------VYVEHDIDGTHSDTSVLDFVFESGV--------GTKEAIKDKLI 533
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287
+D + + L G + ++ +AR ++ +L +DEP HLD + +
Sbjct: 534 EFGFTDEMIAMP-----ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD----TVNV 584
Query: 288 VTLKK-LASTGCTLLF 302
L L + G T +
Sbjct: 585 AWLVNYLNTCGITSIT 600
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 6e-06
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD--SVSAL 284
H ++GL G++ ++ +A RPH++ +DEP +LD S+ AL
Sbjct: 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL 940
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 48/196 (24%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMPYGSYGF------ 186
G + I+G + SGKST LR I L P G + VNG + G
Sbjct: 31 AGDVISIIGSSGSGKSTFLRCI-NFLEKPSE----GAIIVNGQNINLVRDKDGQLKVADK 85
Query: 187 --VERETTLIG----------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS---L 231
+ T + +TV E + A +Q+ G + + E A+ ++ +
Sbjct: 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGL--SKHDARERALKYLAKVGI 142
Query: 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL-LMMV-- 288
+ A Y L G+++RV IAR L M P VL DEP SAL +V
Sbjct: 143 DERAQGK-----YPVHLSGGQQQRVSIARALAMEPDVLLFDEP------TSALDPELVGE 191
Query: 289 ---TLKKLASTGCTLL 301
+++LA G T++
Sbjct: 192 VLRIMQQLAEEGKTMV 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 56/376 (14%), Positives = 111/376 (29%), Gaps = 87/376 (23%)
Query: 105 SVVWKDLTVTIKGKRRYSDKVVKSSNG-YAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
++ D V K +K L P +I G SGK+ + +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV 222
+M ++F + + T++ L + L Y Q+ + R +
Sbjct: 177 QCKMDFKIF---------WLNLKNCNSPETVLEML---QKLLY----QIDPNWTSRSDHS 220
Query: 223 EDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
+ + S+ +L+ Y L LV+ +V + +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCL-------------LVLL-NV-------QNAKAW 259
Query: 282 SALLMMVTLKKLASTGC-TLLFTINQSSTEVFGLFDR--ICLLSNGNTLFFGETLACLQH 338
+A + C LL T + T+ I L + TL E + L
Sbjct: 260 NAF----------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 339 FSNAGFPCPIMQSPS---DHFLRAINTDFDRIIAMCKS----WQD-DHGDFSSVNMDTAV 390
+ + C P R ++ I + W + H + +
Sbjct: 310 YLD----CRPQDLPREVLTTNPRRLSI----IAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 391 AIRTLEAT-----YQSSA---DAAAVETMILRLTEKEGPFLKSKGKASSATRVAV-LTWR 441
++ LE + + +A + T++L L + S V L
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-------IWFDVIKSDVMVVVNKLHKY 414
Query: 442 SLLIMSREWKYYWLRL 457
SL+ ++ K + +
Sbjct: 415 SLV--EKQPKESTISI 428
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 63/257 (24%)
Query: 96 AVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA 155
K G ++ + D V ++ + + +KS N + GT ++G SGKST+ +
Sbjct: 8 TSHEKKFGVNIEFSD--VNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 156 IAGRLPHSARMY---GEVFVNGAK-SEMPYGSY----GFVERETTLIGSLTVREYLYYSA 207
+ R Y G++ + G ++ S G V ++T L T++ + Y
Sbjct: 66 L-------YRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNILYG- 116
Query: 208 LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC---------------GE 252
+ + ++ + A K + +++ LP GE
Sbjct: 117 ----------KLDATDEEVIK------ATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGE 160
Query: 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL-----LFTINQS 307
R+R+ IAR L+ P ++ DE LDS + L ++ L + L TI+ +
Sbjct: 161 RQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSA 220
Query: 308 STEVFGLFDRICLLSNG 324
+ I LL+ G
Sbjct: 221 --------ESIILLNKG 229
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 67/267 (25%), Positives = 114/267 (42%), Gaps = 44/267 (16%)
Query: 112 TVTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY 167
+ ++ +++ + + + N G ++GP+ SGKSTLL IAG + P S ++Y
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIY 61
Query: 168 -GEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKN 220
E V + + + ++ L +TV + + + L+L +
Sbjct: 62 FDEKDVTELPPKDRNVGLVFQNWA-------LYPHMTVYKNIAFP--LELRKAPREEIDK 112
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V + + + N+ Y L G+++RV IAR LV P VL +DEPL +LD
Sbjct: 113 KVREVAKMLHIDKLLNR------YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD- 165
Query: 281 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335
ALL + LK+L G T ++ T +Q E + DRI ++ G L G
Sbjct: 166 --ALLRLEVRAELKRLQKELGITTVYVTHDQ--AEALAMADRIAVIREGEILQVGTPDEV 221
Query: 336 LQHFSN---AGFPCPIMQSPSDHFLRA 359
GF + +P +F+ A
Sbjct: 222 YYKPKYKFVGGF----LGNPPMNFVEA 244
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 6e-06
Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 64/220 (29%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G + I+G + SGKSTL + I R Y G+V ++G + G
Sbjct: 34 QGEVIGIVGRSGSGKSTLTKLI-------QRFYIPENGQVLIDGHDLALADPNWLRRQVG 86
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++ L+ ++ + + + + + + A KL G H ++
Sbjct: 87 VVLQDNVLLNR-SIIDNISLA-----------NPGMSVEKVIY------AAKLAGAHDFI 128
Query: 246 KGLP------CGER---------RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
L GE+ +R+ IAR LV P +L DE LD S ++M +
Sbjct: 129 SELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 291 KKLASTGCTLLF------TINQSSTEVFGLFDRICLLSNG 324
K+ G T++ T+ + DRI ++ G
Sbjct: 189 HKIC-KGRTVIIIAHRLSTVKNA--------DRIIVMEKG 219
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 7e-06
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 42/209 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
PG ++GP+ +GKST+LR + R Y G + ++G S++ S G
Sbjct: 79 PGQTLALVGPSGAGKSTILRLLF-------RFYDISSGCIRIDGQDISQVTQASLRSHIG 131
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++T L T+ + + Y G + VE A A + D G+
Sbjct: 132 VVPQDTVLFND-TIADNIRY-------GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQ 183
Query: 246 KG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
G L GE++RV IAR ++ P ++ +DE LD+ + + +L K+ + T+
Sbjct: 184 VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTI 243
Query: 301 -----LFTINQSSTEVFGLFDRICLLSNG 324
L T+ + D+I ++ +G
Sbjct: 244 VVAHRLSTVVNA--------DQILVIKDG 264
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 58/218 (26%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G ++G + GKST+++ + R Y G VF++G + ++ G
Sbjct: 1058 KGQTLALVGSSGCGKSTVVQLLE-------RFYDPMAGSVFLDGKEIKQLNVQWLRAQLG 1110
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA-----------MSLSDY 234
V +E L ++ E + Y + V + I SL D
Sbjct: 1111 IVSQEPILF-DCSIAENIAYGD---------NSRVVSYEEIVRAAKEANIHQFIDSLPDK 1160
Query: 235 ANKLIGGHCYMKG--LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
N +G KG L G+++R+ IAR LV +PH+L +DE LD+ S ++ L K
Sbjct: 1161 YNTRVG----DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216
Query: 293 LASTGCTL------LFTINQSSTEVFGLFDRICLLSNG 324
A G T L TI Q++ D I ++ NG
Sbjct: 1217 -AREGRTCIVIAHRLSTI-QNA-------DLIVVIQNG 1245
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 65/370 (17%), Positives = 117/370 (31%), Gaps = 72/370 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G ++G + GKST ++ + R+Y G V ++G + G
Sbjct: 415 SGQTVALVGNSGCGKSTTVQLMQ-------RLYDPLDGMVSIDGQDIRTINVRYLREIIG 467
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA------MSLSDYANKLI 239
V +E L + T+ E + Y + + A M L + L+
Sbjct: 468 VVSQEPVLF-ATTIAENIRYG----RED--VTMDEIEKAVKEANAYDFIMKLPHQFDTLV 520
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
G L G+++R+ IAR LV P +L +DE LD+ S ++ L K A G T
Sbjct: 521 GERGAQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRT 577
Query: 300 LLF------TINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS 353
+ T+ + D I G I++ +
Sbjct: 578 TIVIAHRLSTVRNA--------DVIAGFDGGV----------------------IVEQGN 607
Query: 354 DHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMIL 413
L + +++ + + + + + + S+ T
Sbjct: 608 HDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKS 667
Query: 414 RLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSG 473
+ S +A WR L + S EW Y+ + + +I G +
Sbjct: 668 ICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAII----NGGLQPA 723
Query: 474 LGHSLSSVVT 483
S VV
Sbjct: 724 FSVIFSKVVG 733
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 37/229 (16%)
Query: 112 TVTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY 167
++ + K+ + K V + G ++GP+ GK+T L +AG + P S +Y
Sbjct: 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTSGEIY 61
Query: 168 -GEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKN 220
+V VN + M + +Y L +TV E + + L+ + +
Sbjct: 62 FDDVLVNDIPPKYREVGMVFQNYA-------LYPHMTVFENIAFP--LRARRISKDEVEK 112
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V + + + + ++ L G+++RV +AR LV +P VL DEPL +LD
Sbjct: 113 RVVEIARKLLIDNLLDR------KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD- 165
Query: 281 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
A L M +K L G T ++ T +Q E + RI + + G
Sbjct: 166 --ANLRMIMRAEIKHLQQELGITSVYVTHDQ--AEAMTMASRIAVFNQG 210
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 44/267 (16%)
Query: 112 TVTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY 167
V ++ +R+ + V N G V++GP+ GK+T LR IAG L P R+Y
Sbjct: 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIY 69
Query: 168 -GEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKN 220
G+ V + M + SY + +TV E + + L++ F +
Sbjct: 70 FGDRDVTYLPPKDRNISMVFQSYA-------VWPHMTVYENIAFP--LKIKKFPKDEIDK 120
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V A + + + N+ Y L G+R+RV +AR +V+ P VL +DEPL +LD
Sbjct: 121 RVRWAAELLQIEELLNR------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD- 173
Query: 281 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335
A L M +KKL T ++ T +Q E + DRI +++ G L G
Sbjct: 174 --AKLRVAMRAEIKKLQQKLKVTTIYVTHDQ--VEAMTMGDRIAVMNRGQLLQIGSPTEV 229
Query: 336 LQHFSN---AGFPCPIMQSPSDHFLRA 359
++ A F + +P + L
Sbjct: 230 YLRPNSVFVATF----IGAPEMNILEV 252
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 63/309 (20%), Positives = 105/309 (33%), Gaps = 86/309 (27%)
Query: 51 WEDTDVEVRVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKD 110
WE+ E+ + ++ N T+ SLS N L +P L KD
Sbjct: 14 WEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVL-----------------KD 56
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ I+ G + + G +GK++LL I G L S G++
Sbjct: 57 INFKIE------------------RGQLLAVAGSTGAGKTSLLMMIMGELEPSE---GKI 95
Query: 171 FVNGAKSEMPYGSYGFVERETTLIGSLTVRE---------YLYYSALLQLPGFFCQRKNV 221
+G S S+ I T++E Y Y
Sbjct: 96 KHSGRISFCSQNSW---------IMPGTIKENIIGVSYDEYRY----------------- 129
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKG-----LPCGERRRVRIARELVMRPHVLFIDEPLY 276
I A L + +K + G L G+R R+ +AR + + +D P
Sbjct: 130 -RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188
Query: 277 HLDS-VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG---ET 332
+LD + + KL + +L T ++ E D+I +L G++ F+G E
Sbjct: 189 YLDVLTEKEIFESCVCKLMANKTRILVT-SK--MEHLKKADKILILHEGSSYFYGTFSEL 245
Query: 333 LACLQHFSN 341
FS+
Sbjct: 246 QNLRPDFSS 254
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 30/153 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTL 193
G + ++G +GK+T L AIAG + G++ NG + P ++ L
Sbjct: 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQK---GKIIFNGQDITNKP--AHVINRMGIAL 85
Query: 194 I-------GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-----SLSDYANKLIGG 241
+ LTV E L + + + K ++ + + L + +L G
Sbjct: 86 VPEGRRIFPELTVYEN------LMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG- 138
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ G GE++ + I R L+ RP +L +DEP
Sbjct: 139 --TLSG---GEQQMLAIGRALMSRPKLLMMDEP 166
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 49/271 (18%), Positives = 93/271 (34%), Gaps = 71/271 (26%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G + + ++++ +I +V ++G SGKSTLL A RL +
Sbjct: 32 GGNAILENISFSISPG----QRVG--------------LLGRTGSGKSTLLSAFL-RLLN 72
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ--RKN 220
+ GE+ ++G I R+ + Q F RKN
Sbjct: 73 TE---GEIQIDG--------------VSWDSITLEQWRKAF--GVIPQKVFIFSGTFRKN 113
Query: 221 V----------VEDAIHAMSLSDYANKLIGG---HCYMKG--LPCGERRRVRIARELVMR 265
+ + + L + G G L G ++ + +AR ++ +
Sbjct: 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173
Query: 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+L +DEP HLD V+ ++ TLK+ A CT++ + + D+ ++
Sbjct: 174 AKILLLDEPSAHLDPVTYQIIRRTLKQ-AFADCTVILCEARIEAML--ECDQFLVIEENK 230
Query: 326 TLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356
+ + P+D F
Sbjct: 231 VRQYDS-------------ILELYHYPADRF 248
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + + G +GK++LL I G L G++ +G S + S + + I
Sbjct: 33 RGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGRIS---FCS------QFSWI 80
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVV----------EDAIHAMSLSDYANKLIGGHCY 244
T++E N++ I A L + +K
Sbjct: 81 MPGTIKE------------------NIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 122
Query: 245 MKG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGC 298
+ G L G+R R+ +AR + + +D P +LD + + KL +
Sbjct: 123 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 182
Query: 299 TLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+L T ++ E D+I +L G++ F+G
Sbjct: 183 RILVT-SK--MEHLKKADKILILHEGSSYFYG 211
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 61/219 (27%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
P ++ GP+ GKST+ + R Y GE+ ++G + ++ G
Sbjct: 27 PNSIIAFAGPSGGGKSTIFSLL-------ERFYQPTAGEITIDGQPIDNISLENWRSQIG 79
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
FV +++ ++ T+RE L Y + ++ + L ++
Sbjct: 80 FVSQDSAIMAG-TIRENLTYG----------LEGDYTDEDLWQ------VLDLAFARSFV 122
Query: 246 KGLP------CGER---------RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
+ +P GER +R+ IAR + P +L +DE LDS S ++ L
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 291 KKLASTGCTL-----LFTINQSSTEVFGLFDRICLLSNG 324
L TL L TI + D+I + G
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDA--------DKIYFIEKG 213
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
+DL +I G+ ++K N G + +MGP +GKSTL + +AG
Sbjct: 7 RDLWASIDGE-----TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 71/277 (25%), Positives = 115/277 (41%), Gaps = 58/277 (20%)
Query: 112 TVTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY 167
V + + + + V+ + G +++GP+ GK+T LR IAG L P ++Y
Sbjct: 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIY 61
Query: 168 -GEVFVNGAKSE-----------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215
G+ V + M + SY L +TV + + + L+L
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYA-------LYPHMTVYDNIAFP--LKLRKVP 112
Query: 216 -CQRKNVVEDAIHAMSLSDYANK----LIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270
+ V + + L++ N+ L GG +R+RV + R +V +P V
Sbjct: 113 RQEIDQRVREVAELLGLTELLNRKPRELSGG----------QRQRVALGRAIVRKPQVFL 162
Query: 271 IDEPLYHLDSVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGN 325
+DEPL +LD A L M LKKL G T ++ T +Q E + DRI +++ G
Sbjct: 163 MDEPLSNLD---AKLRVRMRAELKKLQRQLGVTTIYVTHDQ--VEAMTMGDRIAVMNRGV 217
Query: 326 TLFFGETLACLQHFSN---AGFPCPIMQSPSDHFLRA 359
G +N AGF + SP +FL A
Sbjct: 218 LQQVGSPDEVYDKPANTFVAGF----IGSPPMNFLDA 250
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
KDL V+++ K +++ + PG + IMGP SGKSTL +AGR
Sbjct: 24 KDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.98 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.98 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.97 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.92 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.92 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.92 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.9 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.89 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.89 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.88 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.87 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.86 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.85 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.84 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.84 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.84 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.84 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.83 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.82 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.82 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.82 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.81 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.81 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.81 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.8 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.79 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.79 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.79 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.78 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.78 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.78 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.77 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.77 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.75 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.74 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.74 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.74 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.73 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.71 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.7 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.7 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.69 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.68 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.66 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.64 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.63 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.63 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.62 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.61 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.6 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.58 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.57 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.56 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.52 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.51 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.49 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.49 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.48 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.48 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.48 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.47 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.47 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.45 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.45 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.42 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.4 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.38 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.38 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.37 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.37 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.36 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.36 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.33 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.32 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.28 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.26 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.25 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.25 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.23 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.17 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.16 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.12 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.11 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.06 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.06 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.05 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.03 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.98 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.94 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.94 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.92 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.9 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.9 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.87 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.81 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.77 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.72 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.71 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.6 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.58 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.55 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.51 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.47 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.45 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.4 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.39 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.38 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.37 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.36 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.31 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.25 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.22 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.22 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.21 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.2 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.19 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.15 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.15 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.12 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.11 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.08 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.08 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.03 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.01 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.01 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.0 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.98 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.89 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.88 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.83 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.82 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.81 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.81 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.8 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.77 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.77 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.73 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.73 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.72 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.72 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.72 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.67 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.63 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.6 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.6 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.56 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.51 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.5 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.46 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.45 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.45 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.44 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.42 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.37 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.37 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.34 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.28 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.27 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.24 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.22 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.19 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.19 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.18 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.14 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.08 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.06 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.05 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.04 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.03 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.01 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.01 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.99 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.98 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.94 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.89 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.89 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.89 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.88 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.86 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.83 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.82 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.8 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.8 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.75 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.75 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.74 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.72 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.69 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.67 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.66 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.61 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.6 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.55 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.51 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.5 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.49 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.48 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.48 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.43 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.42 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.42 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.41 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.38 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.35 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.32 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.31 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.31 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.26 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.26 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.26 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.23 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.23 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.21 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.2 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.13 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.13 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.13 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.12 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.07 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.06 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 96.04 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.03 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.02 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.01 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.99 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.91 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.91 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.82 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.81 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.8 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.78 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.75 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.74 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.7 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.69 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.67 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.64 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.64 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.64 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.6 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.6 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.58 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.57 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.57 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.56 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.55 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.55 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.54 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.54 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.54 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.53 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.51 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.51 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.51 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.5 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.47 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.46 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.46 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.45 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.45 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.45 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.44 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.44 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.41 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.41 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.41 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.4 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.38 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.36 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.36 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.35 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.34 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.34 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.34 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.32 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.32 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.31 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.29 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.27 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.26 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.24 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.24 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.23 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.21 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.21 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.2 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.19 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.16 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.14 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.13 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.12 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.1 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.1 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.09 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.09 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.06 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.03 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.03 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.01 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.0 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.0 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.0 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.98 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.97 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.97 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.97 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.95 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.94 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.92 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.91 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.89 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.89 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.88 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.87 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.84 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.81 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.81 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.81 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.8 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.8 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.8 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.77 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.77 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.76 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.76 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.76 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.74 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.74 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.72 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.71 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 94.71 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 94.68 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.68 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.68 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 94.65 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.64 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.64 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 94.63 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.63 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 94.62 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.61 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.61 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.59 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 94.58 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.58 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.58 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.58 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.56 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.55 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.55 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 94.55 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 94.55 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.55 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.54 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.52 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 94.52 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.51 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 94.51 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 94.51 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.5 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.49 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.49 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 94.45 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 94.4 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 94.39 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 94.38 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 94.37 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.35 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.34 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 94.33 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.32 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.31 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 94.3 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 94.29 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 94.28 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.26 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 94.26 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.26 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 94.23 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.23 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 94.22 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.2 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 94.16 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.15 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.15 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.14 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.1 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.05 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.05 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.03 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.02 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 94.0 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 93.99 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 93.95 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 93.94 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 93.93 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 93.84 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.8 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 93.76 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 93.73 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 93.73 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 93.61 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 93.6 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 93.57 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 93.57 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 93.56 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 93.54 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.52 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 93.48 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 93.41 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 93.4 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 93.34 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 93.31 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 93.28 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 93.23 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 93.07 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 92.97 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 92.95 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 92.83 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 92.71 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 92.7 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 92.55 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 92.55 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 92.54 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 92.47 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 91.56 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 92.31 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 92.19 | |
| 1knx_A | 312 | Probable HPR(Ser) kinase/phosphatase; HPR kinase, | 92.18 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 92.17 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 92.16 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 92.14 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 91.99 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 91.95 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 91.94 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 91.86 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=417.55 Aligned_cols=222 Identities=22% Similarity=0.278 Sum_probs=194.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||+++|..+. ....+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 23 ~mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSES 98 (366)
T ss_dssp CCEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHH
T ss_pred ceEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 4699999999996421 2356999999999999999999999999999999999999997 49999999886421
Q ss_pred -----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
++.+||++|++.+++.+||+||+.++...... ...+.+++++++|+.+||.+..++ +|.+||||||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~-~~~~~~~~v~~lL~~vgL~~~~~~------~~~~LSGGqkQR 171 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDKHDS------YPSNLSGGQKQR 171 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCGGGTTC------CTTTSCHHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhcC------ChhhCCHHHHHH
Confidence 24699999999999999999999998765422 223456789999999999988776 455999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..|+++|++++++ |.|||+++|+. ..+..+||||++|++|++++.|++.+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999754 99999988876 68889999999999999999999988
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 251 v~~ 253 (366)
T 3tui_C 251 VFS 253 (366)
T ss_dssp HHS
T ss_pred HHh
Confidence 753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-50 Score=416.79 Aligned_cols=217 Identities=28% Similarity=0.398 Sum_probs=193.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.|+++||+++|. .+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~yg-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHH
Confidence 489999999993 457999999999999999999999999999999999999997 4999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.+|||+|++.+||.+||+||+.|+...+.. ...+.+++++++++.++|.++.++. |.+|||||||||+||||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~------p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEVINQRVNQVAEVLQLAHLLDRK------PKALSGGQRQRVAIGRT 147 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTC-CHHHHHHHHHHHHHHTTCGGGTTCC------GGGSCHHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCC------hhHCCHHHHHHHHHHHH
Confidence 5799999999999999999999998765422 2234567899999999999888775 45999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||++||+..+.++++.|+++.++ |.|+|++||+. .++..+||||++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999999999999765 99999988875 68999999999999999999999998764
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=417.18 Aligned_cols=217 Identities=22% Similarity=0.323 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC----CC-
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS----EM- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~----~~- 179 (513)
.|+++||+++|. .+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++. ..
T Consensus 4 ~l~i~~ls~~y~-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 589999999993 457999999999999999999999999999999999999997 49999999875 11
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.+|||+|++.+||.+||+||+.|+...+.. ...+.+++++++++.++|.+++++.+ .+|||||||||+
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r~~------~~LSGGq~QRVa 148 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG-RTAQERQRIEAMLELTGISELAGRYP------HELSGGQQQRAA 148 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC-CSHHHHHHHHHHHHHHTCGGGTTSCG------GGSCHHHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCCchHhcCCh------hhCCHHHHHHHH
Confidence 135799999999999999999999887543221 11345678999999999999888754 599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+..+.++++.|+++. +.|.|+|+++|+. .++..+||||++|++|+++..|+++++.
T Consensus 149 lArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 149 LARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 9999999999999999999999999999999888875 4699999988875 6899999999999999999999999876
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 228 ~ 228 (359)
T 3fvq_A 228 R 228 (359)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-50 Score=397.59 Aligned_cols=217 Identities=24% Similarity=0.249 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (513)
.++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++..
T Consensus 6 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccccccc
Confidence 589999999993 346999999999999999999999999999999999999987 499999998753
Q ss_pred -----C-------CCceEEEEcCCcccCCCCCHHHHHHHHH-HhcCCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCC
Q 010314 179 -----M-------PYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCY 244 (513)
Q Consensus 179 -----~-------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~ 244 (513)
. .++.++|++|++.+++.+||+||+.++. ... .....+..++++++++.+||.+. .++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~----- 151 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL-GLSKHDARERALKYLAKVGIDERAQGKYP----- 151 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc-CCCHHHHHHHHHHHHHHcCCCchhhcCCc-----
Confidence 1 1245999999999999999999998864 222 11112345678999999999988 87755
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
.+|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. .++..+||+|++|++|
T Consensus 152 -~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G 229 (262)
T 1b0u_A 152 -VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 229 (262)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETT
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 49999999999999999999999999999999999999999999999987799999988875 5788899999999999
Q ss_pred eEEEEeChHHHHH
Q 010314 325 NTLFFGETLACLQ 337 (513)
Q Consensus 325 ~iv~~G~~~~~~~ 337 (513)
++++.|+++++..
T Consensus 230 ~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 230 KIEEEGDPEQVFG 242 (262)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEeCCHHHHHh
Confidence 9999999987653
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=390.82 Aligned_cols=218 Identities=28% Similarity=0.311 Sum_probs=185.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++||+++|.++. ..+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 78999999996321 1246999999999999999999999999999999999999997 49999999875422
Q ss_pred ----CceEEEEcCCcccCCCCCHHHHHHHHHHhcC--CCchhhHHHHHHHHHHHcCChhHH-hhhhcCCCCCCCCCHHHH
Q 010314 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQL--PGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~-~~~vg~~~~~~~LSGGqr 253 (513)
++.+||++|++.+++.+||+||+.++..... .....+..+++.++++.++|.+.. ++ ++.+||||||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~LSgGq~ 151 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH------KPNQLSGGQQ 151 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC------CGGGSCHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC------ChhhCCHHHH
Confidence 1359999999999999999999998765432 111234456788999999998653 65 4559999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+|||||+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|+. . +..+||+|++|++|+++..+++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~~~ 229 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKL 229 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEcCh
Confidence 9999999999999999999999999999999999999999865 99999988886 3 4589999999999999999987
Q ss_pred HHH
Q 010314 333 LAC 335 (513)
Q Consensus 333 ~~~ 335 (513)
+++
T Consensus 230 ~~~ 232 (235)
T 3tif_A 230 RGF 232 (235)
T ss_dssp C--
T ss_pred hhh
Confidence 663
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=398.69 Aligned_cols=219 Identities=23% Similarity=0.309 Sum_probs=189.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||+++|.+ ...+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 6 ~~l~i~~ls~~y~~----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 6 YILKVEELNYNYSD----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKG 78 (275)
T ss_dssp EEEEEEEEEEECTT----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHH
T ss_pred cEEEEEEEEEEECC----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCccccc
Confidence 36899999999842 245999999999999999999999999999999999999997 49999999886321
Q ss_pred ----CceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 ----YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 ----~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
++.+||++|++. .+..+||+||+.++..... ....+..++++++++.++|.++.++.+ .+||||||||
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgGqkQR 151 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPEDEIRKRVDNALKRTGIEHLKDKPT------HCLSFGQKKR 151 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHTTCGGGTTSBG------GGSCHHHHHH
T ss_pred HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhcCCc------ccCCHHHHHH
Confidence 246999999862 3347899999998865432 122345677999999999998887755 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..++++|++++ ++|+|||+++|+. ..+..+||+|++|++|++++.|++++
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 230 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999997 5699999999987 47889999999999999999999988
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 231 ~~~ 233 (275)
T 3gfo_A 231 VFA 233 (275)
T ss_dssp HTH
T ss_pred Hhc
Confidence 754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=396.22 Aligned_cols=217 Identities=24% Similarity=0.302 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--C-C-
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--M-P- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~-~- 180 (513)
.++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. . .
T Consensus 24 ~l~i~~l~~~y~-----~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSFG-----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccH
Confidence 599999999993 346999999999999999999999999999999999999987 499999998763 1 1
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHH-HhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
++.++|++|++.+++.+||+||+.++. .... ....+..++++++++.++|.+..++.+ .+|||||||||
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgGqkQRv 168 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK-WPREKAEAKAMELLDKVGLKDKAHAYP------DSLSGGQAQRV 168 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCchHhcCCh------hhCCHHHHHHH
Confidence 235999999999999999999998864 2221 111234567899999999998877754 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999987799999988875 5788899999999999999999998765
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 248 ~ 248 (263)
T 2olj_A 248 D 248 (263)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-49 Score=384.28 Aligned_cols=210 Identities=25% Similarity=0.278 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 4 ~l~~~~l~~~y~-----~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVIR-----GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 589999999993 356999999999999999999999999999999999999987 49999999875321
Q ss_pred -----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+||+||+.++..... ....+..++++++++.++|.+..++.+ .+||||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qr 148 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG-KPKKEAKERGEYLLSELGLGDKLSRKP------YELSGGEQQR 148 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHTTCTTCTTCCG------GGSCHHHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHH
Confidence 1459999999999999999999988754431 111234567899999999988877754 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. ..+ .+||++++|++|++++.|+
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 149 VAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999999999987799999988885 455 8999999999999999886
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=394.13 Aligned_cols=215 Identities=20% Similarity=0.225 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|. .+++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 7 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYFG-----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEEC-----CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 589999999993 346999999999999999999999999999999999999987 49999999876421
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHh-cCC-----------CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCC
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALL-QLP-----------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~-~~~-----------~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~ 246 (513)
++.++|++|++.+++.+||+||+.++... ... ....+..++++++++.+||.+..++.+ .
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~ 152 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA------G 152 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG------G
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc------h
Confidence 23599999999999999999999876432 111 111234567899999999998887755 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
+|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. .++..+||++++|++|++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999987799999998887 478889999999999999
Q ss_pred EEEeChHH
Q 010314 327 LFFGETLA 334 (513)
Q Consensus 327 v~~G~~~~ 334 (513)
++.|++++
T Consensus 232 ~~~g~~~~ 239 (257)
T 1g6h_A 232 IAEGRGEE 239 (257)
T ss_dssp EEEEESHH
T ss_pred EEEeCHHH
Confidence 99999887
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-49 Score=389.32 Aligned_cols=218 Identities=27% Similarity=0.309 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|. .+.+|++|||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 14 ~~l~i~~l~~~y~-----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 85 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHE 85 (256)
T ss_dssp CCEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHH
T ss_pred CeEEEEEEEEEEC-----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHH
Confidence 3689999999993 356999999999999999999999999999999999999987 49999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
++.++|++|++.+++.+||+||+.+...+... ...+..++++++++.++|.+..++.+ .+|||||||||+||
T Consensus 86 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS-SSSEIEEMVERATEIAGLGEKIKDRV------STYSKGMVRKLLIA 158 (256)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCGGGGGSBG------GGCCHHHHHHHHHH
T ss_pred HhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCCchHhcCCh------hhCCHHHHHHHHHH
Confidence 24699999999999999999999886543211 11233467889999999998888755 49999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. .++..+||++++|++|++++.|+++++..
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999987799999988876 57888999999999999999999988754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-49 Score=386.47 Aligned_cols=216 Identities=22% Similarity=0.282 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 5 ~~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 5 IVLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred ceEEEEeEEEEEC-----CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHH
Confidence 3589999999994 346999999999999999999999999999999999999987 49999999876321
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcC-ChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
.+.++|++|++.+++.+||+||+.++....... .+..+.++++++.++ |.+..++. +.+|||||||||
T Consensus 77 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~------~~~LSgGq~qrv 148 (240)
T 1ji0_A 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK--EGIKRDLEWIFSLFPRLKERLKQL------GGTLSGGEQQML 148 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS--SHHHHHHHHHHHHCHHHHTTTTSB------SSSSCHHHHHHH
T ss_pred HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCH--HHHHHHHHHHHHHcccHhhHhcCC------hhhCCHHHHHHH
Confidence 134999999999999999999998753211111 234466788999995 87776664 459999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999999999987799999988876 5788999999999999999999987764
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-49 Score=404.87 Aligned_cols=220 Identities=25% Similarity=0.377 Sum_probs=193.1
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...++++||++.|. +.+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 12 ~~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPP 84 (355)
T ss_dssp CEEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCG
T ss_pred CceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCCh
Confidence 35799999999882 1346999999999999999999999999999999999999997 4999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
..+.+|||+|+..+||.+||+||+.|+...+.. ...+.+++++++++.++|.++.++.+ .+|||||||||+||
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r~~------~~LSGGq~QRvalA 157 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRV-PKDEMDARVRELLRFMRLESYANRFP------HELSGGQQQRVALA 157 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHHHH
Confidence 235799999999999999999999998654321 12344677999999999998887754 59999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||+.+|+||||||||+|||+..+..+++.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++++..
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999764 99999988875 68899999999999999999999988754
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=406.46 Aligned_cols=217 Identities=24% Similarity=0.348 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||+++|. .+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccc
Confidence 489999999993 356999999999999999999999999999999999999997 4999999976421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.+|||+|+..+||++||+||+.|+...+.. ...+.+++++++++.++|.++.++.+ .+||||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSGGq~QR 147 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV-PRQEIDQRVREVAELLGLTELLNRKP------RELSGGQRQR 147 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTCGGGTTCCG------GGSCHHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhcCCc------ccCCHHHHHH
Confidence 235799999999999999999999998654321 11344567999999999998887754 5999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+..+..+++.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|++++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 99999988876 58889999999999999999999998
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
+..
T Consensus 227 l~~ 229 (372)
T 1g29_1 227 VYD 229 (372)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=390.34 Aligned_cols=215 Identities=24% Similarity=0.313 Sum_probs=188.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|. .+.+|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 10 ~~l~~~~l~~~~~-----~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 10 ALLEASHLHYHVQ-----QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH---GECHLLGQNLNSWQPK 81 (266)
T ss_dssp CEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS---CEEEETTEETTTSCHH
T ss_pred ceEEEEeEEEEeC-----CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCCHH
Confidence 3689999999993 4579999999999999999999999999999999999999975 9999999986432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++.+++.+||+||+.++.... .. .+.+++++++++.++|.++.++.+ .+|||||||||+|
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~QRv~i 152 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-GG--SQDRQALQQVMAQTDCLALAQRDY------RVLSGGEQQRVQL 152 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-CS--TTHHHHHHHHHHHTTCSTTTTSBG------GGCCHHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc-Cc--HHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHHH
Confidence 245899999999888999999998764322 11 244567899999999998877755 4999999999999
Q ss_pred HHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 259 ARELVM------RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 259 AraL~~------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||+. +|+||||||||+|||+.++..++++|++++++ |+|||+++|+. .++..+||+|++|++|++++.|+
T Consensus 153 AraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~ 231 (266)
T 4g1u_C 153 ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGT 231 (266)
T ss_dssp HHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcC
Confidence 999999 99999999999999999999999999999865 57999988775 67889999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 232 ~~~~~ 236 (266)
T 4g1u_C 232 PEEVL 236 (266)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98864
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-49 Score=405.61 Aligned_cols=217 Identities=23% Similarity=0.349 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|. .+.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFG-----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhh
Confidence 489999999993 356999999999999999999999999999999999999997 4999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.+|||+|+..+||++||+||+.|+...+. ....+.+++++++++.++|.++.++.+ .+|||||||||+||||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARR-ISKDEVEKRVVEIARKLLIDNLLDRKP------TQLSGGQQQRVALARA 147 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSC-SHHHHTTHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchHhcCCh------hhCCHHHHHHHHHHHH
Confidence 579999999999999999999988643221 111234567899999999998887754 5999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+..+..+++.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999754 99999988876 57889999999999999999999998864
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=405.53 Aligned_cols=217 Identities=25% Similarity=0.371 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|. .+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFG-----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEESS-----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhH
Confidence 489999999983 356999999999999999999999999999999999999997 4999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.+|||+|+..+||++||+||+.|+...+.. ...+.+++++++++.++|.++.++.+ .+|||||||||+||||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSGGq~QRvalArA 147 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKA-PREEIDKKVREVAKMLHIDKLLNRYP------WQLSGGQQQRVAIARA 147 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCTTCTTCCG------GGSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhhCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999998654321 11344567999999999998887754 5999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+..+..+++.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999754 99999988875 58889999999999999999999998764
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-49 Score=405.46 Aligned_cols=217 Identities=24% Similarity=0.339 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEeccccccce--eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDK--VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
.++++||++.|. .+. +|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~i~~l~~~y~-----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVFK-----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEEG-----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEEC-----CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECccccc
Confidence 489999999994 345 999999999999999999999999999999999999997 4999999976421
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.+|||+|+..+||.+||+||+.|+...+. ....+.+++++++++.++|.++.++.+ .+|||||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~~------~~LSGGq~Q 147 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK-MSKEEIRKRVEEVAKILDIHHVLNHFP------RELSGAQQQ 147 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS-CCHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchHhcCCh------hhCCHHHHH
Confidence 23579999999999999999999988653321 111344567999999999999887754 599999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||+|||||+.+|+||||||||+|||+..+..+++.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~ 226 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999754 99999988876 5889999999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 227 ~l~~ 230 (353)
T 1oxx_K 227 DLYD 230 (353)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=405.22 Aligned_cols=217 Identities=25% Similarity=0.343 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|. .+.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEEC-----CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhh
Confidence 489999999993 346999999999999999999999999999999999999997 4999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.+|||+|+..+||++||+||+.|+...+. ....+.+++++++++.++|.+++++. |.+|||||||||+||||
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~------~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKK-FPKDEIDKRVRWAAELLQIEELLNRY------PAQLSGGQRQRVAVARA 155 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--C-CCHHHHHHHHHHHHHHTTCGGGTTSC------TTTCCSSCHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhHhcCC------hhhCCHHHHHHHHHHHH
Confidence 579999999999999999999988643221 11134456799999999999888775 45999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+..+..+++.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999765 99999988876 58889999999999999999999998864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=399.92 Aligned_cols=211 Identities=24% Similarity=0.323 Sum_probs=187.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---Cc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---YG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---~~ 182 (513)
++++||+++|. .+ +|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.... .+
T Consensus 2 l~~~~l~~~y~-----~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKWK-----NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEECS-----SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEEC-----CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhC
Confidence 68999999983 34 999999999999999999999999999999999999997 49999999876421 35
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.+|||+|+..+||.+||+||+.|+...+... .. ++++++++.++|.++.++.+ .+|||||||||+|||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~---~~-~~v~~~l~~~~L~~~~~~~~------~~LSgGq~QRvalAraL 142 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---DP-KRVLDTARDLKIEHLLDRNP------LTLSGGEQQRVALARAL 142 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---CH-HHHHHHHHHTTCTTTTTSCG------GGSCHHHHHHHHHHHHT
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCC---HH-HHHHHHHHHcCCchHhcCCh------hhCCHHHHHHHHHHHHH
Confidence 6999999999999999999999976543211 12 67899999999998887754 59999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+|+||||||||+|||+..+..+++.|+++.+ .|.|+|+++|+. .++..+||+|++|++|+++..|+++++.
T Consensus 143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999975 499999988876 5788999999999999999999998875
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=383.26 Aligned_cols=221 Identities=22% Similarity=0.331 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~ 182 (513)
.++++||++.|.......+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+... .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhh
Confidence 47899999999411000146999999999999999999999999999999999999987 4999999987531 135
Q ss_pred eEEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh--hHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.++|++|++ .+++.+||+||+.++.....+. .+..++++++++.+||. +..++.+ .+|||||||||+||
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD--RDPVPLVKKAMEFVGLDFDSFKDRVP------FFLSGGEKRRVAIA 150 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTT--SCSHHHHHHHHHHTTCCHHHHTTCCG------GGSCHHHHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCH--HHHHHHHHHHHHHcCcCCcccccCCh------hhCCHHHHHHHHHH
Confidence 699999995 5667799999998854221111 23346789999999998 8877754 49999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+. ..+..+||++++|++|++++.|++.++..
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999986799999998887 46788999999999999999999988764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-48 Score=380.15 Aligned_cols=211 Identities=24% Similarity=0.332 Sum_probs=183.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++||++.|. . +|+||||++++ |+++|+||||||||||+|+|+|+++|+ +|+|.++|.+... ..+
T Consensus 2 l~~~~l~~~y~-----~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRLG-----N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEET-----T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEeC-----C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhC
Confidence 68999999983 1 59999999999 999999999999999999999999987 4999999987532 235
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||+||+.++.... .. ...+++++++++.+||.+..++.+ .+|||||||||+|||||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~--~~-~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGqkqRv~lAral 141 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNV--ER-VERDRRVREMAEKLGIAHLLDRKP------ARLSGGERQRVALARAL 141 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTS--CH-HHHHHHHHHHHHTTTCTTTTTCCG------GGSCHHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHc--CC-chHHHHHHHHHHHcCCHHHhcCCh------hhCCHHHHHHHHHHHHH
Confidence 6999999999999999999998753221 11 122567889999999988877754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|+. .++..+||++++|++|++++.|+++++..
T Consensus 142 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999754 99999988876 57889999999999999999999987653
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-47 Score=376.07 Aligned_cols=214 Identities=18% Similarity=0.245 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCC--
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~--~~~~~~~~G~I~i~G~~~~~~-- 180 (513)
.++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|.+....
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASID-----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEEC-----CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCH
Confidence 489999999993 35699999999999999999999999999999999998 6665 59999999875321
Q ss_pred ----CceEEEEcCCcccCCCCCHHHHHHHHHHh--cCCCchhhHHHHHHHHHHHcCC-hhHHhhhhcCCCCCCC-CCHHH
Q 010314 181 ----YGSYGFVERETTLIGSLTVREYLYYSALL--QLPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKG-LPCGE 252 (513)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~--~~~~~~~~~~~~v~~~l~~~~L-~~~~~~~vg~~~~~~~-LSGGq 252 (513)
...++|++|++.+++.+||+||+.+.... .......+..+++.++++.+|| .++.++.++ + |||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------~~LSgGq 148 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN------EGFSGGE 148 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT------CC----H
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc------cCCCHHH
Confidence 12489999999999999999999876431 1111112334678899999999 577777554 7 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc-CCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~G~ 331 (513)
||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. ..+..+ ||++++|++|++++.|+
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeC
Confidence 9999999999999999999999999999999999999999976799999999987 467777 59999999999999999
Q ss_pred hH
Q 010314 332 TL 333 (513)
Q Consensus 332 ~~ 333 (513)
++
T Consensus 228 ~~ 229 (250)
T 2d2e_A 228 PE 229 (250)
T ss_dssp HH
T ss_pred HH
Confidence 86
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=383.49 Aligned_cols=217 Identities=23% Similarity=0.283 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~- 180 (513)
+.++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. ..
T Consensus 20 ~~l~~~~l~~~y~-----~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 91 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-----GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91 (279)
T ss_dssp EEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CC
T ss_pred ceEEEEeEEEEEC-----CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCC
Confidence 4699999999994 346999999999999999999999999999999999999997 499999998753 11
Q ss_pred ----CceEEEEcCCcccC--CCCCHHHHHHHHHHh--cC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 181 ----YGSYGFVERETTLI--GSLTVREYLYYSALL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 181 ----~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
++.++|++|++.++ +.+||+||+.++... .. .....+..++++++++.+||.+..++.+ .+||||
T Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG 165 (279)
T 2ihy_A 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI------GYLSTG 165 (279)
T ss_dssp HHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG------GGSCHH
T ss_pred HHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh------hhCCHH
Confidence 24699999997643 356999999874211 00 0011233467889999999998887755 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE--EEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL--LFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--i~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
|||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|| |+++|+. .++..+||+|++|++|++++.
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998669999 9988886 477889999999999999999
Q ss_pred eChHHH
Q 010314 330 GETLAC 335 (513)
Q Consensus 330 G~~~~~ 335 (513)
|+++++
T Consensus 245 g~~~~~ 250 (279)
T 2ihy_A 245 GAVEDI 250 (279)
T ss_dssp EEHHHH
T ss_pred CCHHHH
Confidence 998775
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=371.61 Aligned_cols=208 Identities=24% Similarity=0.318 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++||++.|.. .+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.+ .+.+
T Consensus 4 ~l~i~~l~~~y~~----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSCE
T ss_pred eEEEeeEEEEeCC----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------eccE
Confidence 5899999999931 357999999999999999999999999999999999999987 499983 2469
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+|++|++.+++.+||+||+.++...... .......++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lAra 142 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF------TSLSGGQRQLILIARA 142 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG------GGSCHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh------hhCCHHHHHHHHHHHH
Confidence 9999999999999999999876422110 011233467899999999998887755 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+. ..+..+||++++|++|+ ++.|+++++
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 143 IASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 99999999999999999999999999999999876 99999988876 57888999999999999 999988775
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=378.03 Aligned_cols=216 Identities=22% Similarity=0.337 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|.+ .+.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 52 ~~i~~~~vs~~y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~ 124 (306)
T 3nh6_A 52 GRIEFENVHFSYAD----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQA 124 (306)
T ss_dssp CCEEEEEEEEESST----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHH
T ss_pred CeEEEEEEEEEcCC----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHH
Confidence 36999999999952 356999999999999999999999999999999999999997 49999999986432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqr 253 (513)
++.++||+|++.+|+ .||+|||.++.. . ...+.+.++++.+++.++.+.++.| ...+.+||||||
T Consensus 125 ~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~----~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 125 SLRSHIGVVPQDTVLFN-DTIADNIRYGRV----T---AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp HHHHTEEEECSSCCCCS-EEHHHHHHTTST----T---CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred HHhcceEEEecCCccCc-ccHHHHHHhhcc----c---CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 346999999999985 599999976421 1 1234577888999998877665432 134568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||++||+.++..|++.|+++.+ ++|+|+++|+. ..+.. ||+|++|++|++++.|+++
T Consensus 197 QRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~~~-aD~i~vl~~G~iv~~G~~~ 273 (306)
T 3nh6_A 197 QRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRL-STVVN-ADQILVIKDGCIVERGRHE 273 (306)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSH-HHHHT-CSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcCh-HHHHc-CCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 78999988876 45655 9999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 274 el~~ 277 (306)
T 3nh6_A 274 ALLS 277 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-46 Score=372.10 Aligned_cols=218 Identities=20% Similarity=0.226 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC--
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~~-- 180 (513)
.++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|.+....
T Consensus 20 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSVE-----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCH
Confidence 599999999993 356999999999999999999999999999999999994 454 59999999875321
Q ss_pred ----CceEEEEcCCcccCCCCCHHHHHHHHHH-h----cCCC-chhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCC
Q 010314 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL-L----QLPG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (513)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-~----~~~~-~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LS 249 (513)
...++|++|++.+++.+||.||+.+... . .... ...+..++++++++.+||. +..++.++ .+||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LS 166 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN-----VGFS 166 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT-----TTCC
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCC
Confidence 1248999999999999999999977541 1 1111 1123345788999999996 46665432 1499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc-CCEEEEEeCCeEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLF 328 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~ 328 (513)
|||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. ..+..+ ||++++|++|++++
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999976799999988886 466665 89999999999999
Q ss_pred EeChHHHH
Q 010314 329 FGETLACL 336 (513)
Q Consensus 329 ~G~~~~~~ 336 (513)
.|+++++.
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99988764
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-46 Score=366.20 Aligned_cols=216 Identities=25% Similarity=0.361 Sum_probs=182.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|.+ ..+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 6 ~~~~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 6 HDITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CceeEEEEEEEeCC---CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 46899999999831 1346999999999999999999999999999999999999987 49999999886431
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqr 253 (513)
++.++|++|++.+++ .||+||+.++. +. ...+++.++++.+++.++.++.+.| ...+..||||||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 151 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLAN----PG---MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 151 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTC----TT---CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccC----CC---CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHH
Confidence 246999999999886 59999997641 11 1234578889999999887765311 124579999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||+++|+.. .+ ..||++++|++|++++.|+++
T Consensus 152 qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~ 228 (247)
T 2ff7_A 152 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHK 228 (247)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999995 5899999998864 45 459999999999999999988
Q ss_pred HHH
Q 010314 334 ACL 336 (513)
Q Consensus 334 ~~~ 336 (513)
++.
T Consensus 229 ~l~ 231 (247)
T 2ff7_A 229 ELL 231 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-46 Score=366.99 Aligned_cols=205 Identities=22% Similarity=0.304 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++. .+|+|+||++++||+++|+||||||||||+|+|+|+++| . |+|.++|.+....
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 5889999864 489999999999999999999999999999999999988 3 9999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.+.++|++|++.+++.+||+||+.+.. .... . .++++++++.+||.+..++.+ .+|||||||||+||
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~---~~~~--~-~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lA 138 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQ---HDKT--R-TELLNDVAGALALDDKLGRST------NQLSGGEWQRVRLA 138 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTC---SSTT--C-HHHHHHHHHHTTCGGGTTSBG------GGCCHHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhh---ccCC--c-HHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHH
Confidence 246999999999999999999997642 1111 1 466889999999998877754 49999999999999
Q ss_pred HHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 260 RELVMRPH-------VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 260 raL~~~P~-------iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+.+|+ ||||||||+|||+.++..++++|++++++|+|||+++|+. ..+..+||++++|++|++++.|++
T Consensus 139 raL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp HHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999 9999999999999999999999999987799999988875 578899999999999999999998
Q ss_pred HHH
Q 010314 333 LAC 335 (513)
Q Consensus 333 ~~~ 335 (513)
+++
T Consensus 218 ~~~ 220 (249)
T 2qi9_C 218 EEV 220 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=372.61 Aligned_cols=218 Identities=22% Similarity=0.272 Sum_probs=175.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|.+. ..+.+|+||||.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 16 ~l~~~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH--PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTTC--TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHH
Confidence 59999999998421 1256999999999999999999999999999999999999987 49999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCC-ch-h--hHHHHHHHHHHHc--CChhHHhhhhcCCCCCCCCCHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPG-FF-C--QRKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~-~--~~~~~v~~~l~~~--~L~~~~~~~vg~~~~~~~LSGGqr 253 (513)
++.++||+|++.+++ .||+||+.++... ... .. . .....+.++++.+ ||....++ ++.+||||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~------~~~~LSgGq~ 162 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTR-TPTMEEITAVAMESGAHDFISGFPQGYDTEVGE------TGNQLSGGQR 162 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSS-CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG------GGTTSCHHHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhccc-CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC------CcCCCCHHHH
Confidence 246999999999887 5999999774211 111 00 0 0111234556666 45544444 3459999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+|||||+.+|+||||||||+|||+.++..++++|+++++ .|+|||+++|+. ..+. .||+|++|++|++++.|++
T Consensus 163 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 163 QAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999864 489999988876 4554 5999999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
+++..
T Consensus 241 ~~l~~ 245 (271)
T 2ixe_A 241 LQLME 245 (271)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-46 Score=367.51 Aligned_cols=215 Identities=20% Similarity=0.305 Sum_probs=180.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++||++.|. ..+.+|+||||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhCCHHHH
Confidence 68999999883 13469999999999999999999999999999999999999874 999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqR 255 (513)
++.++|++|++.+++ .||+||+.++.. +. ...+.+.++++.+++.++.++.+.| ...+..||||||||
T Consensus 75 ~~~i~~v~q~~~l~~-~tv~enl~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qr 147 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMA-GTIRENLTYGLE---GD---YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQR 147 (243)
T ss_dssp TTTCCEECCSSCCCC-EEHHHHTTSCTT---SC---SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred HhhEEEEcCCCcccc-ccHHHHHhhhcc---CC---CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHH
Confidence 356999999999887 599999976311 11 1234578899999998877654321 12457999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|+||||||||+|||+.++..+++.|++++ +|+|||+++|+. ..+ ..||++++|++|++++.|+++++
T Consensus 148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999997 699999988886 455 46999999999999999998876
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 225 ~~ 226 (243)
T 1mv5_A 225 VA 226 (243)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-46 Score=358.79 Aligned_cols=203 Identities=22% Similarity=0.314 Sum_probs=173.4
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
+..|+++||++.|. . .+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+.....+
T Consensus 8 ~~~l~~~~ls~~y~-----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78 (214)
T ss_dssp -CEEEEEEEEEESS-----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGG
T ss_pred CceEEEEEEEEEeC-----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcC
Confidence 46799999999983 3 6999999999999999999999999999999999999987 4999999987532235
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||+||+.+........ .+ .++++++++.++|.+. ++.+ .+|||||||||+|||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~--~~-~~~~~~~l~~~gl~~~-~~~~------~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVK--VN-KNEIMDALESVEVLDL-KKKL------GELSQGTIRRVQLASTL 148 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCC--CC-HHHHHHHHHHTTCCCT-TSBG------GGSCHHHHHHHHHHHHT
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCc--hH-HHHHHHHHHHcCCCcC-CCCh------hhCCHHHHHHHHHHHHH
Confidence 7999999999999999999998875432111 12 4668899999999877 6654 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+.. ++..+||+++++ .|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999867899999999874 788889988755 3443
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-45 Score=362.12 Aligned_cols=209 Identities=22% Similarity=0.352 Sum_probs=179.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCce
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGS 183 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~ 183 (513)
++++||++.|.+.. ..+.+|+|+||+++ |++++|+||||||||||+|+|+|++ |+ +|+|.++|.+.. ..++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhh
Confidence 78999999995310 11469999999999 9999999999999999999999999 86 499999998642 11456
Q ss_pred EE-EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 184 YG-FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 184 ~~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
++ |++|++.+ .+||+||+.+...+. . ...++++++++.++|. +..++.+ .+|||||||||+||||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~--~---~~~~~~~~~l~~~gl~~~~~~~~~------~~LSgGqkqRv~lAra 142 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELK--G---LDRDLFLEMLKALKLGEEILRRKL------YKLSAGQSVLVRTSLA 142 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHT--C---CCHHHHHHHHHHTTCCGGGGGSBG------GGSCHHHHHHHHHHHH
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhc--c---hHHHHHHHHHHHcCCChhHhcCCh------hhCCHHHHHHHHHHHH
Confidence 99 99999887 889999998865432 1 2245688999999998 8877755 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCC-EEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD-RICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D-~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+.++..+++.|+++++ |||+++|+. ..+..+|| ++++|++|++++.|+++++..
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 143 LASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999998854 999988886 46788999 999999999999999988764
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-45 Score=361.62 Aligned_cols=217 Identities=24% Similarity=0.324 Sum_probs=179.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|.+. ..+.+|+||||++++|++++|+||||||||||+|+|+|++++ +|+|.++|.+....
T Consensus 16 ~~l~i~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~ 89 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ--TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRN 89 (260)
T ss_dssp CCEEEEEEEECCTTC--CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHH
T ss_pred CeEEEEEEEEEeCCC--CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHH
Confidence 469999999998431 124699999999999999999999999999999999999875 39999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqr 253 (513)
++.++|++|++.+++ .||+||+.++. .. ...+.+.++++.+++.+..+.+..+ ..++..||||||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~---~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk 161 (260)
T 2ghi_A 90 SIRSIIGIVPQDTILFN-ETIKYNILYGK----LD---ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER 161 (260)
T ss_dssp HHHTTEEEECSSCCCCS-EEHHHHHHTTC----TT---CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred HHhccEEEEcCCCcccc-cCHHHHHhccC----CC---CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence 246999999999886 59999997631 11 1134567888889987765443211 235679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||+++|+.. .+ ..||++++|++|++++.|+++
T Consensus 162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 238 (260)
T 2ghi_A 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHK 238 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999964 899999998864 44 469999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 239 ~l~~ 242 (260)
T 2ghi_A 239 DLLK 242 (260)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=380.93 Aligned_cols=215 Identities=21% Similarity=0.297 Sum_probs=181.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||+++|.. ..+.+|+||||+|++||+++|+||||||||||||+|+|+++ + +|+|.++|++....
T Consensus 18 ~~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 46999999999952 23569999999999999999999999999999999999987 4 59999999875421
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqr 253 (513)
++.++||+|++.+|+ +||+||+.+. .. ..++++.++++.++|.++.++++... .....||||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~-----~~---~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqr 161 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPN-----AA---HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHK 161 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTT-----CC---SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhc-----cc---cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHH
Confidence 257999999999997 6999999531 11 23456889999999999988865410 01123999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||+|||+..+..+++.|+++. .++|+|+++|+. ++...||+|++|++|+++..|+++
T Consensus 162 QRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~ 238 (390)
T 3gd7_A 162 QLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSIL 238 (390)
T ss_dssp HHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999864 478999988875 355679999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 239 el~~ 242 (390)
T 3gd7_A 239 ELYH 242 (390)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=350.89 Aligned_cols=206 Identities=21% Similarity=0.291 Sum_probs=170.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++||++.|.. ..+.+|+||||++++|++++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------EE
Confidence 6899999998842 1356999999999999999999999999999999999999987 49999998 38
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrqRv~IA 259 (513)
+|++|++.+++. ||+||+.++. . .. ...+.++++.+++.+..+....+. ..+..|||||||||+||
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~--~--~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lA 142 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGV--S--YD----EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 142 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTS--C--CC----HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccC--C--cC----hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 999999999885 9999997642 1 11 123455677778876655432111 23569999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||+.+|+||||||||+|||+.++..+++. ++++. +|+|||+++|+. ..+. .||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 143 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHLK-KADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp HHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHHH-HCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999997 45654 488999988885 4554 59999999999999999988764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-44 Score=349.89 Aligned_cols=207 Identities=20% Similarity=0.256 Sum_probs=167.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++||++.|.. ..+.+|+||||++++|++++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 3 ~l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g--------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG--------SV 68 (237)
T ss_dssp CEEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC--------EE
Confidence 4899999999842 1356999999999999999999999999999999999999986 59999998 38
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhc-----CCCCCCCCCHHHHHHHHHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG-----GHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg-----~~~~~~~LSGGqrqRv~IA 259 (513)
+|++|++.+ +.+||+||+.++.. ... +..+++++.+++.+..+.... -...+.+|||||||||+||
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~--~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQ--LEE------PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSC--CCT------THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHH
T ss_pred EEEcCCCcC-CCcCHHHHhhCccc--cCH------HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 999999865 57899999976421 111 123345555555433221100 0235679999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLK---KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||+.+|+||||||||+|||+.++..+++.|. ++. +|+|||+++|+.. .+ ..||++++|++|++++.|+++++.
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999995 443 4899999999874 44 579999999999999999988765
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 217 ~ 217 (237)
T 2cbz_A 217 A 217 (237)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=379.24 Aligned_cols=218 Identities=23% Similarity=0.306 Sum_probs=185.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++++|++. .+.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g~~~~~~~~~ 413 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK---EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS---GSICLDGHDVRDYKLT 413 (582)
T ss_pred CeEEEEEEEEEcCCC---CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECCEEhhhCCHH
Confidence 369999999999531 2469999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
.++.++||+|++.+|+. ||+||+.++.. +. ..+++++++++.+++.++.++++.|.+ .+.+||||||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~---~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 414 NLRRHFALVSQNVHLFND-TIANNIAYAAE---GE---YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred HHhcCeEEEcCCCccccc-cHHHHHhccCC---CC---CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHH
Confidence 13569999999999975 99999977421 11 224568899999999988777653322 3468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||++||+.++..+.+.|+++.+ |+|+|+++|++. .+ ..||+|++|++|++++.|+++
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 899999999874 44 479999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 564 ~l~~ 567 (582)
T 3b5x_A 564 DLLA 567 (582)
T ss_pred HHHh
Confidence 8754
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=379.25 Aligned_cols=218 Identities=22% Similarity=0.296 Sum_probs=185.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.|++. .+.+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 413 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR---EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLA 413 (582)
T ss_dssp CCEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHH
T ss_pred CcEEEEEEEEEcCCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHH
Confidence 359999999998521 256999999999999999999999999999999999999987 49999999886431
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqr 253 (513)
++.++||+|++.+|+. ||+||+.++.. +. ..+++++++++.+++.++.++++.|. ..+.+||||||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 414 SLRNQVALVSQNVHLFND-TVANNIAYART---EE---YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHHTTTT---SC---CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred HHHhhCeEEccCCcCCCC-CHHHHHhccCC---CC---CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHH
Confidence 2469999999999975 99999976421 11 22456889999999998877754322 23468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+|||||||||+||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999965 899999999874 44 579999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 564 ~l~~ 567 (582)
T 3b60_A 564 ELLA 567 (582)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=377.65 Aligned_cols=217 Identities=22% Similarity=0.302 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|++++|++ ..+.+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 338 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 411 (578)
T 4a82_A 338 GRIDIDHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTG 411 (578)
T ss_dssp CCEEEEEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 46999999999853 2346999999999999999999999999999999999999997 49999999886432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqr 253 (513)
++.++||+|++.+|+. ||+||+.++ .+. ..++.+.++++.+++.+..+.++.|. ..+.+||||||
T Consensus 412 ~~r~~i~~v~Q~~~l~~~-tv~eni~~~----~~~---~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~ 483 (578)
T 4a82_A 412 SLRNQIGLVQQDNILFSD-TVKENILLG----RPT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483 (578)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHGGG----CSS---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred HHhhheEEEeCCCccCcc-cHHHHHhcC----CCC---CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence 2469999999999976 999999764 121 22356788889999988776655332 23468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||||||+.++..+.+.|+++. +++|+|+++|+.. .+ ..||+|++|++|++++.|+++
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999985 4789999888874 44 569999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 561 el~~ 564 (578)
T 4a82_A 561 ELIA 564 (578)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=378.92 Aligned_cols=217 Identities=25% Similarity=0.390 Sum_probs=183.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|++++|++ ..+.+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 340 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 340 GSVSFENVEFRYFE---NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLK 413 (587)
T ss_dssp CCEEEEEEEECSSS---SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHH
T ss_pred CcEEEEEEEEEcCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHH
Confidence 46999999999853 2356999999999999999999999999999999999999997 49999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqr 253 (513)
++.++||+|++.+|+. ||+||+.++. +. ..++.+.++++..++.+..+.++.| ...+.+||||||
T Consensus 414 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqr 485 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSG-TIKENLKWGR----ED---ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485 (587)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHTTTC----SS---CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHH
T ss_pred HHHhheEEECCCCcCcCc-cHHHHHhccC----CC---CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHH
Confidence 3569999999999965 9999996531 11 1234567778888887766554432 235678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|+.. .+ ..||+|++|++|++++.|+++
T Consensus 486 Qrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~-~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-TA-LLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-HH-TTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999985 5899999999864 44 589999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 563 el~~ 566 (587)
T 3qf4_A 563 ELLE 566 (587)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=379.76 Aligned_cols=216 Identities=23% Similarity=0.353 Sum_probs=183.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|++++|++ .+.+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 353 ~~i~~~~v~~~y~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~ 425 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRS 425 (598)
T ss_dssp CCEEEEEEECCSSS----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEECCC----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHH
Confidence 36999999999852 346999999999999999999999999999999999999997 49999999886432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
++.++||+|++.+|+ .||+||+.++ .+. ..++.+.++++.+++.+..++++.|.+. ..+||||||
T Consensus 426 ~~r~~i~~v~Q~~~lf~-~tv~eni~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 426 SLRSSIGIVLQDTILFS-TTVKENLKYG----NPG---ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp HHHHHEEEECTTCCCCS-SBHHHHHHSS----STT---CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred HHHhceEEEeCCCcccc-ccHHHHHhcC----CCC---CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 346999999999986 5999999763 111 1224467788888888877776543322 258999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|+.. .+ ..||+|++|++|++++.|+++
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~ 574 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHD 574 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999986 5899999999885 45 459999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 575 ~l~~ 578 (598)
T 3qf4_B 575 ELIQ 578 (598)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=343.29 Aligned_cols=203 Identities=21% Similarity=0.309 Sum_probs=157.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++||++.+ +.+|+|+||++++|++++|+||||||||||+|+|+|+++|+ +|+|.++| .
T Consensus 39 ~~l~~~~l~~~~-------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g--------~ 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------R 100 (290)
T ss_dssp -----------C-------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS--------C
T ss_pred ceEEEEEEEEcC-------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC--------E
Confidence 358999998742 36999999999999999999999999999999999999986 59999988 3
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRI 258 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrqRv~I 258 (513)
++|++|++.+++. ||+||+. +. ... ...+.++++.+++.+..+....+. ..+.+|||||||||+|
T Consensus 101 i~~v~Q~~~l~~~-tv~enl~-~~--~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~l 170 (290)
T 2bbs_A 101 ISFCSQNSWIMPG-TIKENII-GV--SYD------EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170 (290)
T ss_dssp EEEECSSCCCCSS-BHHHHHH-TT--CCC------HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHH
T ss_pred EEEEeCCCccCcc-cHHHHhh-Cc--ccc------hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHH
Confidence 8999999998875 9999996 21 111 123456677788876655432111 1346899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+||||||||+|||+.++..+++.+ +++. .|+|||+++|+. ..+ ..||++++|++|++++.|+++++..
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHHhh
Confidence 99999999999999999999999999999974 5554 489999988886 455 4699999999999999999988753
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=395.95 Aligned_cols=220 Identities=23% Similarity=0.365 Sum_probs=189.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++|+||+++|+++ ...++|+||||+|+|||.+||+|+||||||||+++|.|++.|++ |+|.+||.++...
T Consensus 1075 g~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~---G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER--PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG---GEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp CCEEEEEEEECCTTS--CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSS---SEEEETTEETTTBCHH
T ss_pred CeEEEEEEEEeCCCC--CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCC---CEEEECCEEhhhCCHH
Confidence 369999999999643 34469999999999999999999999999999999999999975 9999999986532
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC-----CCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM-----KGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~-----~~LSGGqr 253 (513)
+++++||+|++.+|.. |++|||.|+. -+. ...++.+.++++..++.++...+++|.+.+ ..||||||
T Consensus 1150 ~lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~--~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQr 1223 (1321)
T 4f4c_A 1150 HTRSQIAIVSQEPTLFDC-SIAENIIYGL---DPS--SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQK 1223 (1321)
T ss_dssp HHHTTEEEECSSCCCCSE-EHHHHHSSSS---CTT--TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHH
T ss_pred HHHhheEEECCCCEeeCc-cHHHHHhccC---CCC--CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHH
Confidence 3579999999999965 9999996531 111 234567899999999998877776655433 56999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+++|+|||||||||+||+.+...|.+.|+++. +|+|+|+++|... ....||+|+||++|+|+++|+++
T Consensus 1224 QriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1224 QRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKGTHT 1300 (1321)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESSSSEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998865 5899999999875 34679999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 1301 eLl~ 1304 (1321)
T 4f4c_A 1301 QLMS 1304 (1321)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=384.84 Aligned_cols=218 Identities=21% Similarity=0.287 Sum_probs=189.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++|+|++|+|++. ..+++|+|+||++++|+.+||+||||||||||+++|.|+++|. +|+|.+||.++...
T Consensus 414 g~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~ 488 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR--PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLE 488 (1321)
T ss_dssp CCEEEEEEEECCSSS--TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CcEEEEEeeeeCCCC--CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHH
Confidence 369999999999643 3467999999999999999999999999999999999999997 49999999986542
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
++.++||+|++.+|. .||+|||.|+. +. ..++++.++++..++.++.+.++.|+.. ...||||||
T Consensus 489 ~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~----~~---~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk 560 (1321)
T 4f4c_A 489 FLRKNVAVVSQEPALFN-CTIEENISLGK----EG---ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560 (1321)
T ss_dssp HHHHHEEEECSSCCCCS-EEHHHHHHTTC----TT---CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred HHhhcccccCCcceeeC-CchhHHHhhhc----cc---chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence 357999999999995 49999997741 21 2356789999999999888777665543 356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+...+.+.|+++. +|+|+|+++|+.. ....||+|++|++|+|++.|+.+
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~ 637 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHR 637 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHH
Confidence 99999999999999999999999999999999999999986 4889999999975 46789999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 638 eL~~ 641 (1321)
T 4f4c_A 638 ALMA 641 (1321)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-39 Score=378.74 Aligned_cols=218 Identities=22% Similarity=0.293 Sum_probs=183.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|++++|+++ ...++|+||||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 386 g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR--KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CCEEEEEEEECCSST--TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCCC--CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHH
Confidence 369999999999642 2346999999999999999999999999999999999999997 49999999885432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqr 253 (513)
++.++||+|++.+|+. ||+||+.++. +. ..++.+.++++..++.+....++.|. ..+.+||||||
T Consensus 461 ~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~----~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~ 532 (1284)
T 3g5u_A 461 YLREIIGVVSQEPVLFAT-TIAENIRYGR----ED---VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK 532 (1284)
T ss_dssp HHHHHEEEECSSCCCCSS-CHHHHHHHHC----SS---CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred HHHhheEEEcCCCccCCc-cHHHHHhcCC----CC---CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence 2469999999999976 9999998752 11 12355777888888877665554332 24568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+|||||||||+||+.+...+.+.|+.+. +|+|+|+++|+. ..+ ..||+|++|++|++++.|+.+
T Consensus 533 QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g~~~ 609 (1284)
T 3g5u_A 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRL-STV-RNADVIAGFDGGVIVEQGNHD 609 (1284)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCH-HHH-TTCSEEEECSSSCCCCEECHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998875 589999988876 455 459999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 610 ~l~~ 613 (1284)
T 3g5u_A 610 ELMR 613 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=378.27 Aligned_cols=220 Identities=22% Similarity=0.299 Sum_probs=183.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.|+++ ....+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 1029 g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR--PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp CCEEEEEEEBCCSCG--GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHH
T ss_pred CcEEEEEEEEECCCC--CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHH
Confidence 469999999999642 2346999999999999999999999999999999999999997 49999999876432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
++.++||+|++.+|+ .||+||+.++. +.. ...++.+.++++..++.++.++++.|.+ ....||||||
T Consensus 1104 ~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~----~~~-~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~ 1177 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFD-CSIAENIAYGD----NSR-VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQK 1177 (1284)
T ss_dssp HHTTSCEEEESSCCCCS-SBHHHHHTCCC----SSC-CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHH
T ss_pred HHHhceEEECCCCcccc-ccHHHHHhccC----CCC-CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHH
Confidence 356999999998885 69999996532 110 1123457778888888877766553322 3467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||+|||+.+...|.+.|+++. +|+|||+++|+.. .+ ..||||++|++|++++.|+++
T Consensus 1178 Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp HHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998864 5899999898875 45 559999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 1255 ~l~~ 1258 (1284)
T 3g5u_A 1255 QLLA 1258 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=343.72 Aligned_cols=206 Identities=19% Similarity=0.201 Sum_probs=175.7
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...++++|+++.|. ...|+++||.+++||++||+||||||||||+++|+|+++|++ |+|.+. .
T Consensus 285 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~--------~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEWD--------L 347 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---CCCCCC--------C
T ss_pred CeEEEEeeEEEEEC------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEC--------c
Confidence 35799999998873 246899999999999999999999999999999999999874 998751 3
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|+..+.+.+||.|++........ ...+.++++++.+++.+..++.+ ..|||||||||+|||+|
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~------~~LSGGe~qrv~lAraL 416 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKL-----NSNFYKTELLKPLGIIDLYDREV------NELSGGELQRVAIAATL 416 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHH-----TCHHHHHHTTTTTTCGGGTTSBG------GGCCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHHH
Confidence 58999999887788999998865311110 12356788999999987777655 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChHHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 337 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 337 (513)
+.+|+||||||||+|||+.++..++++|+++++ .|.|||+++|+. .++..+||+|++|++ |+++..|+++++..
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999999974 599999988875 688999999999986 78889999988765
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=346.13 Aligned_cols=206 Identities=19% Similarity=0.190 Sum_probs=176.4
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...++++|+++.|. ...|++++|.+++||++||+||||||||||+|+|+|+++|++ |+|.+. .
T Consensus 355 ~~~l~~~~l~~~~~------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~~--------~ 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEWD--------L 417 (607)
T ss_dssp CEEEEECCEEEECS------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---SCCCCC--------C
T ss_pred ceEEEEeceEEEec------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEEe--------e
Confidence 35689999998873 246899999999999999999999999999999999999874 998761 3
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|+..+++.+||.|++....... ....+.++++++.++|.+..++.++ +|||||||||+|||||
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~------~LSGGe~QRv~iAraL 486 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSK-----LNSNFYKTELLKPLGIIDLYDRNVE------DLSGGELQRVAIAATL 486 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH-----HHCHHHHHHTHHHHTCTTTTTSBGG------GCCHHHHHHHHHHHHH
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccC-----CCHHHHHHHHHHHcCCchHhcCChh------hCCHHHHHHHHHHHHH
Confidence 5999999988778899999886531100 0123567889999999887777554 9999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChHHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 337 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 337 (513)
+.+|+||||||||+|||+.++..++++|+++++ .|.|||+++|+. .++..+||+|++|++ |+++..|++++++.
T Consensus 487 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999999974 689999988875 688899999999986 88888999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=339.26 Aligned_cols=206 Identities=17% Similarity=0.242 Sum_probs=172.2
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...++++|+++.|. ...|+++|+.+++||++||+||||||||||+++|+|+++|++ |+|.+++ .
T Consensus 267 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~~-------~ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEK-------Q 330 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSB---CCEESSC-------C
T ss_pred cceEEEcceEEEEC------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC-------e
Confidence 45789999999873 246888899999999999999999999999999999999974 9999765 3
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|+......+||.||+.+... ... ......++++++.++|.+..++.+ .+|||||||||+|||||
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~-~~~---~~~~~~~~~~l~~~~l~~~~~~~~------~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASK-DAL---STSSWFFEEVTKRLNLHRLLESNV------NDLSGGELQKLYIAATL 400 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCS-STT---CTTSHHHHHTTTTTTGGGCTTSBG------GGCCHHHHHHHHHHHHH
T ss_pred eeEeechhcccccCCCHHHHHHHhhh-hcc---chhHHHHHHHHHHcCCHHHhcCCh------hhCCHHHHHHHHHHHHH
Confidence 58999998776678899999976321 110 112345788899999988777755 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLAC 335 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~ 335 (513)
+.+|+||||||||+|||+.++..++++|+++++ .|.|||+++|+. .++..+||||++|++ |.....+++.++
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 999999999999999999999999999999975 589999988775 688999999999986 556666666544
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=332.53 Aligned_cols=203 Identities=18% Similarity=0.220 Sum_probs=166.6
Q ss_pred EeEEEEEeccccccceeeeeeeeEEeCC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 109 KDLTVTIKGKRRYSDKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~G-----e~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
+++++.|++ ...+++++||.+.+| |+++|+||||||||||+++|+|+++|++ |+. . ....
T Consensus 350 ~~~~~~y~~----~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~---G~~------~--~~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS----LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE---GQD------I--PKLN 414 (608)
T ss_dssp SSSCCEECC----EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSB---CCC------C--CSCC
T ss_pred cceeEEecC----cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCC---CcC------c--cCCc
Confidence 445566642 235788999999988 7899999999999999999999999974 752 1 1246
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
++|++|+.......||.|++... ... . ......++++++.++|.+..++. +.+|||||||||+|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~--~~~--~-~~~~~~~~~~l~~l~l~~~~~~~------~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKK--IRG--Q-FLNPQFQTDVVKPLRIDDIIDQE------VQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHH--CSS--T-TTSHHHHHHTHHHHTSTTTSSSB------SSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHH--hhc--c-cccHHHHHHHHHHcCChhhhcCC------hhhCCHHHHHHHHHHHHHH
Confidence 89999997666677999987532 111 1 11234578899999998877764 4599999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChHHHHHH
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQH 338 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~~ 338 (513)
.+|+||||||||+|||+.++..++++|++++ +.|.|||+++|+. .++..+||||++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999999996 4699999988875 688999999999986 899999999887653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=331.91 Aligned_cols=200 Identities=21% Similarity=0.303 Sum_probs=166.7
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
+..+...|+++.|. ++.+|+|+||.+++|++++|+||||||||||||+|+| |+| +|.+... ..
T Consensus 433 ~~~L~~~~ls~~yg-----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~-~~ 495 (986)
T 2iw3_A 433 GEDLCNCEFSLAYG-----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE-EC 495 (986)
T ss_dssp SCEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-TS
T ss_pred cceeEEeeEEEEEC-----CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-ce
Confidence 45678889999983 3579999999999999999999999999999999995 222 3332211 12
Q ss_pred eEEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCC-hhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.++|++|+. .+++.+||.|++.+ .... . .+++.++++.+|| .+..++.++ +|||||||||+|||
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~----~~~~---~-~~~v~~~L~~lgL~~~~~~~~~~------~LSGGqkQRvaLAr 561 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE----SGVG---T-KEAIKDKLIEFGFTDEMIAMPIS------ALSGGWKMKLALAR 561 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT----TCSS---C-HHHHHHHHHHTTCCHHHHHSBGG------GCCHHHHHHHHHHH
T ss_pred eEEEEcccccccccCCcHHHHHHH----hhcC---H-HHHHHHHHHHcCCChhhhcCCcc------cCCHHHHHHHHHHH
Confidence 478999874 67889999999965 1111 1 4668899999999 467787655 99999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (513)
||+.+|+||||||||+|||+.++..++++|++ .|.|||+++|+. ..+..+||++++|++|+++ +.|+++++..
T Consensus 562 AL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 562 AVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999999988 589999988775 6888999999999999997 6899988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=328.48 Aligned_cols=195 Identities=23% Similarity=0.214 Sum_probs=156.2
Q ss_pred EEE-EeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCE
Q 010314 106 VVW-KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGA 175 (513)
Q Consensus 106 l~~-~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I---------~i~G~ 175 (513)
.++ +||+++|.+ ...+|++|| .+++||++||+||||||||||+|+|+|+++|+. |++ .++|.
T Consensus 21 ~~~~~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~---G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYGV----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL---CGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEECC----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CccCcchhhhHHhhCCc
Confidence 455 589998842 124899999 999999999999999999999999999998875 775 35564
Q ss_pred eCC-------CCCceEEEEcCCcccCCC---CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC
Q 010314 176 KSE-------MPYGSYGFVERETTLIGS---LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (513)
Q Consensus 176 ~~~-------~~~~~~~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~ 245 (513)
... .....+++++|....++. .|+.|++... +..++++++++.+||.+..++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----------~~~~~~~~~l~~lgl~~~~~~~~------ 156 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----------DETGKLEEVVKALELENVLEREI------ 156 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----------CSSSCHHHHHHHTTCTTTTTSBG------
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----------hHHHHHHHHHHHcCCChhhhCCh------
Confidence 321 112357889887544332 3898887431 11234788999999988777755
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
.+|||||||||+|||||+.+|+||||||||++||+.++..+++.|+++++.|.|||+++|+. .++..+||+|++|++|.
T Consensus 157 ~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCcc
Confidence 49999999999999999999999999999999999999999999999987899999988875 68889999999998653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=331.32 Aligned_cols=192 Identities=23% Similarity=0.245 Sum_probs=156.0
Q ss_pred EeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEeCCC
Q 010314 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGAKSEM 179 (513)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I---------~i~G~~~~~ 179 (513)
+||++.|.+ ...+|+++| .+++||+++|+||||||||||||+|+|+++|+. |++ .++|.....
T Consensus 95 ~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~---G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYGV----NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCT---TTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEECC----CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCC---CccccccchhhheeCCEehhh
Confidence 788888732 124899999 999999999999999999999999999999875 775 355643210
Q ss_pred -------CCceEEEEcCCcccCC---CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCC
Q 010314 180 -------PYGSYGFVERETTLIG---SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~---~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LS 249 (513)
....+++++|....++ ..||.|++.. . +..++++++++.+||.+..++.++ +||
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~------~~~~~~~~~L~~lgL~~~~~~~~~------~LS 230 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V------DEVGKFEEVVKELELENVLDRELH------QLS 230 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T------CCSSCHHHHHHHTTCTTGGGSBGG------GCC
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----h------HHHHHHHHHHHHcCCCchhCCChh------hCC
Confidence 1234788888643322 2389998853 1 112347889999999988887654 999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
|||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. ..+..+||+|++|+++.
T Consensus 231 GGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 9999999999999999999999999999999999999999999987799999988875 57889999999998653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-36 Score=333.63 Aligned_cols=207 Identities=18% Similarity=0.216 Sum_probs=138.7
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCEeC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------------------RAIAGRLPHSAR----MYGEVFVNGAKS 177 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl---------------------~~L~G~~~~~~~----~~G~I~i~G~~~ 177 (513)
+.+|+||||+|++||++||+||||||||||+ +++.|+.+|+.. ..|.|.++|...
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4689999999999999999999999999998 888888877621 136677777543
Q ss_pred CC-CCceEEEEcCCcc-------------------cCCCCCHHHHHHHHHHhcCCCchh-hHH------HHHHHHHHHcC
Q 010314 178 EM-PYGSYGFVERETT-------------------LIGSLTVREYLYYSALLQLPGFFC-QRK------NVVEDAIHAMS 230 (513)
Q Consensus 178 ~~-~~~~~~yv~Q~~~-------------------l~~~lTV~E~l~~~~~~~~~~~~~-~~~------~~v~~~l~~~~ 230 (513)
.. ....++|++|... .++.+||.||+.+...+....... ... ....++++.+|
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 21 2233455554332 346789999997643222111000 000 01124588888
Q ss_pred ChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 231 LSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 231 L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~--iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
|.+. .++.+ .+|||||||||+|||||+.+|+ ||||||||+|||+.++..++++|++++++|.|||+++|+.
T Consensus 191 L~~~~~~~~~------~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 191 LDYLTLSRSA------GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp CTTCCTTCBG------GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CchhhhcCCc------ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 8764 45544 4999999999999999999998 9999999999999999999999999988899999988875
Q ss_pred hHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 308 STEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 308 ~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
.. ...||+|++| ++|++++.|+++++..
T Consensus 265 -~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 265 -DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp -HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred -HH-HhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 34 4569999999 8999999999988753
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=332.50 Aligned_cols=206 Identities=21% Similarity=0.311 Sum_probs=161.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++|+++.|++ ..+.+|+|+||.+++|++++|+||||||||||+|+|+|+++|+ +|+|+++|. ..
T Consensus 670 ~mL~v~nLs~~Y~g---~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG---TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCTT---CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred ceEEEEeeEEEeCC---CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 46999999998842 1246999999999999999999999999999999999999997 499999863 24
Q ss_pred EEEEcCCccc----CCCCCHHHHHHHHHHhc------------C------------------------------------
Q 010314 184 YGFVERETTL----IGSLTVREYLYYSALLQ------------L------------------------------------ 211 (513)
Q Consensus 184 ~~yv~Q~~~l----~~~lTV~E~l~~~~~~~------------~------------------------------------ 211 (513)
++|++|+... ....|+.+++.+..... .
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 7888887521 12357777765421000 0
Q ss_pred ----------------------------CC------------------------chhhHHHHHHHHHHHcCChh-H-Hhh
Q 010314 212 ----------------------------PG------------------------FFCQRKNVVEDAIHAMSLSD-Y-ANK 237 (513)
Q Consensus 212 ----------------------------~~------------------------~~~~~~~~v~~~l~~~~L~~-~-~~~ 237 (513)
+. ......++++++++.+||.+ . .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 00 00011356788999999975 3 465
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCE
Q 010314 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 238 ~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
.+ .+|||||||||+|||+|+.+|+||||||||+|||+.+...+++.|+++ +.|||+++|+. +.+..+||+
T Consensus 898 ~~------~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~Dr 967 (986)
T 2iw3_A 898 RI------RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEE 967 (986)
T ss_dssp CG------GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCE
T ss_pred Cc------cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCE
Confidence 44 499999999999999999999999999999999999999999888765 56999988775 578899999
Q ss_pred EEEEeCCeEEEEeC
Q 010314 318 ICLLSNGNTLFFGE 331 (513)
Q Consensus 318 v~vL~~G~iv~~G~ 331 (513)
+++|++|+++..|+
T Consensus 968 VivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 968 VWAVKDGRMTPSGH 981 (986)
T ss_dssp EECCBTTBCCC---
T ss_pred EEEEECCEEEEeCC
Confidence 99999999987764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=317.31 Aligned_cols=194 Identities=21% Similarity=0.222 Sum_probs=146.3
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEeCCCCC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA----------------------GRLPHSARMYGEVFVNGAKSEMPY 181 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~----------------------G~~~~~~~~~G~I~i~G~~~~~~~ 181 (513)
.+|+||||+|++||++||+||||||||||+++|+ |+.++ .|.|.++|.+.....
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRTP 411 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSST
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCCC
Confidence 5799999999999999999999999999998764 22222 367777775432100
Q ss_pred ----------------------------------------------ceEEEEcCCcccCC--------------------
Q 010314 182 ----------------------------------------------GSYGFVERETTLIG-------------------- 195 (513)
Q Consensus 182 ----------------------------------------------~~~~yv~Q~~~l~~-------------------- 195 (513)
...|+++|+..+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 01233333322222
Q ss_pred ------------CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 196 ------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 196 ------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.+||.||+.+... . ...+++.+.++.++|.. ..++ ++.+|||||||||+|||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~----~---~~~~~~~~~l~~~~l~~~~~~~------~~~~LSgG~~qrv~iAraL 558 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFAS----I---PKIKRKLETLYDVGLGYMKLGQ------PATTLSGGEAQRVKLAAEL 558 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTT----C---HHHHHHHHHHHHTTCTTSBTTC------CGGGCCHHHHHHHHHHHHH
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHH----h---hhHHHHHHHHHHcCCchhhccC------CchhCCHHHHHHHHHHHHH
Confidence 4789999876321 1 12244667888899864 2344 4559999999999999999
Q ss_pred hhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChH
Q 010314 263 VMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETL 333 (513)
Q Consensus 263 ~~~P---~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~ 333 (513)
+.+| +||||||||+|||+.++..++++|++++++|.|||+++|+. ..+ ..||+|++| ++|++++.|+++
T Consensus 559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHH-HhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 9987 59999999999999999999999999988899999988886 344 679999999 899999999998
Q ss_pred HHH
Q 010314 334 ACL 336 (513)
Q Consensus 334 ~~~ 336 (513)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-33 Score=306.26 Aligned_cols=186 Identities=19% Similarity=0.189 Sum_probs=142.1
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC-------CCceEE
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM-------PYGSYG 185 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~~-------~~~~~~ 185 (513)
..|++++ .+++||++||+||||||||||||+|+|+++|+. |+|. +.|..... ......
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~---G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC---ceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 4677776 589999999999999999999999999999975 8872 33321100 000112
Q ss_pred EEcCCccc------CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 186 FVERETTL------IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 186 yv~Q~~~l------~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
+.+|.... .+..++.+++... . ....++++++++.+||.+..++.++ +|||||||||+||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~----~----~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGe~Qrv~iA 233 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLR----M----EKSPEDVKRYIKILQLENVLKRDIE------KLSGGELQRFAIG 233 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHH----C----CSCHHHHHHHHHHHTCTGGGGSCTT------TCCHHHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhh----h----hhHHHHHHHHHHHcCCcchhCCChH------HCCHHHHHHHHHH
Confidence 33332111 1123555554321 1 1233568899999999988887554 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. .++..+||+|++|++|..++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999999999988899999987765 68999999999999876544
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.5e-33 Score=301.50 Aligned_cols=172 Identities=18% Similarity=0.195 Sum_probs=136.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCC-------CCCceEEEEcCC----c
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-----------FVNGAKSE-------MPYGSYGFVERE----T 191 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I-----------~i~G~~~~-------~~~~~~~yv~Q~----~ 191 (513)
++||++||+||||||||||+|+|+|+++|+. |+| .++|.+.. .....+..+.|. +
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~---G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNF---GDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCT---TCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 3899999999999999999999999999975 888 56665421 011123334433 3
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 010314 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (513)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLll 271 (513)
.++ ..||.+++... ...++++++++.+++.+..++.++ +|||||||||+|||||+.+|+||||
T Consensus 100 ~~~-~~~v~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~Qrv~iA~aL~~~p~illl 162 (538)
T 3ozx_A 100 KFL-KGTVNEILTKI----------DERGKKDEVKELLNMTNLWNKDAN------ILSGGGLQRLLVAASLLREADVYIF 162 (538)
T ss_dssp TTC-CSBHHHHHHHH----------CCSSCHHHHHHHTTCGGGTTSBGG------GCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhc-cCcHHHHhhcc----------hhHHHHHHHHHHcCCchhhcCChh------hCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 333 34788766321 112346789999999988887654 9999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
||||++||+.++..++++|+++++ |+|||+++|+. .++..+||+|++|++|..+
T Consensus 163 DEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 163 DQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTT
T ss_pred ECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCccc
Confidence 999999999999999999999976 89999988775 6889999999999876543
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=298.43 Aligned_cols=209 Identities=20% Similarity=0.229 Sum_probs=157.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHH-cCC---------CCCC--Ccee---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRL---------PHSA--RMYG--- 168 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~-G~~---------~~~~--~~~G--- 168 (513)
..++++|++. ..|+|||+.|++|+++||+|+||||||||+++|+ |.+ .++. .+.|
T Consensus 628 ~~L~v~~l~~----------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGARE----------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEECS----------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCcc----------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 4688888752 3699999999999999999999999999999854 211 2221 1234
Q ss_pred ---EEEECCEeCCC-C-----------------------CceEEEEcCCcccC----------------------C----
Q 010314 169 ---EVFVNGAKSEM-P-----------------------YGSYGFVERETTLI----------------------G---- 195 (513)
Q Consensus 169 ---~I~i~G~~~~~-~-----------------------~~~~~yv~Q~~~l~----------------------~---- 195 (513)
.|.++|.++.. . .+..||++|...+. +
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 57888765421 0 01245666543221 1
Q ss_pred ----------------------------CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCC
Q 010314 196 ----------------------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMK 246 (513)
Q Consensus 196 ----------------------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~ 246 (513)
.+||.|++.|.. .. ....++.++|+.+||.. ..++. +.
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~--~~-----~~~~~~~~~L~~~gL~~~~l~~~------~~ 844 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA--SI-----PKIKRKLETLYDVGLGYMKLGQP------AT 844 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC--SC-----HHHHHHHHHHHHTTCSSSBTTCC------GG
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh--cc-----hhHHHHHHHHHHcCCCcccccCc------hh
Confidence 357777775421 11 11234578999999976 45554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE--
Q 010314 247 GLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-- 321 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P---~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL-- 321 (513)
.|||||||||+||++|+.+| +||||||||+|||+.++..++++|++++++|.|||+++|+. +.+ ..||+|++|
T Consensus 845 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p 922 (972)
T 2r6f_A 845 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLGP 922 (972)
T ss_dssp GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECS
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEcC
Confidence 99999999999999999865 99999999999999999999999999998899999988875 454 689999999
Q ss_pred ----eCCeEEEEeChHHHHH
Q 010314 322 ----SNGNTLFFGETLACLQ 337 (513)
Q Consensus 322 ----~~G~iv~~G~~~~~~~ 337 (513)
++|++++.|+++++..
T Consensus 923 ~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 923 EGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp SSTTSCCSEEEEESHHHHHT
T ss_pred CCCCCCCEEEEecCHHHHHh
Confidence 7899999999988753
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-31 Score=296.55 Aligned_cols=213 Identities=21% Similarity=0.210 Sum_probs=155.2
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHH-HHcCC-------CCC-----------
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA-IAGRL-------PHS----------- 163 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~-L~G~~-------~~~----------- 163 (513)
...|+++|+++ ..|+|||+.|++|+++||+|+||||||||+++ |+|++ ++.
T Consensus 500 ~~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~ 569 (842)
T 2vf7_A 500 AGWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADH 569 (842)
T ss_dssp SCEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC---------------
T ss_pred CceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccc
Confidence 35689999874 26999999999999999999999999999996 77553 220
Q ss_pred ----CCcee-------EEEECCEeCCCCCc----------------------------------------------eEEE
Q 010314 164 ----ARMYG-------EVFVNGAKSEMPYG----------------------------------------------SYGF 186 (513)
Q Consensus 164 ----~~~~G-------~I~i~G~~~~~~~~----------------------------------------------~~~y 186 (513)
....| .|.++|.++....+ ..|+
T Consensus 570 ~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~ 649 (842)
T 2vf7_A 570 TAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGW 649 (842)
T ss_dssp --CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSE
T ss_pred ccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCc
Confidence 01356 78888865421100 0111
Q ss_pred EcCCcccCC------------------------CCCHHHHHHHHH----HhcCCCchhhHHHHHHHHHHHcCChhH-Hhh
Q 010314 187 VERETTLIG------------------------SLTVREYLYYSA----LLQLPGFFCQRKNVVEDAIHAMSLSDY-ANK 237 (513)
Q Consensus 187 v~Q~~~l~~------------------------~lTV~E~l~~~~----~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~ 237 (513)
+..+..+++ ..++.|++.+.. .+ .... ...+++.++|+.+||... .++
T Consensus 650 ~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~-~~~~--~~~~~~~~~L~~~gL~~~~l~~ 726 (842)
T 2vf7_A 650 VMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDF-FADE--SAIFRALDTLREVGLGYLRLGQ 726 (842)
T ss_dssp EEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHH-TTTS--HHHHHHHHHHHHTTCTTSBTTC
T ss_pred cchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHH-hhcc--hHHHHHHHHHHHcCCCcccccC
Confidence 211111222 234444432110 00 1111 123467899999999763 344
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc
Q 010314 238 LIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 238 ~vg~~~~~~~LSGGqrqRv~IAraL~~~---P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (513)
. +..|||||||||+||++|+.+ |+||||||||+|||+.....++++|++++++|.|||+++|+. +++ ..
T Consensus 727 ~------~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~i-~~ 798 (842)
T 2vf7_A 727 P------ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QVV-AA 798 (842)
T ss_dssp C------GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TT
T ss_pred C------cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-Hh
Confidence 3 459999999999999999996 799999999999999999999999999998899999988875 566 78
Q ss_pred CCEEEEE------eCCeEEEEeChHHHH
Q 010314 315 FDRICLL------SNGNTLFFGETLACL 336 (513)
Q Consensus 315 ~D~v~vL------~~G~iv~~G~~~~~~ 336 (513)
||+|++| ++|++++.|+++++.
T Consensus 799 aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 799 SDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 9999999 799999999998764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=292.21 Aligned_cols=199 Identities=19% Similarity=0.228 Sum_probs=149.7
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEeCCC------
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------RAIAGRLPHSA---RMY------GEVFVNGAKSEM------ 179 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl---------~~L~G~~~~~~---~~~------G~I~i~G~~~~~------ 179 (513)
..|+|||+.|++|++++|+|+||||||||+ +++.|...+.+ ... +.|.+++.+...
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 45555433221 012 234444332110
Q ss_pred ----------------------------------------CCceEEEEcCCcccCC------------------------
Q 010314 180 ----------------------------------------PYGSYGFVERETTLIG------------------------ 195 (513)
Q Consensus 180 ----------------------------------------~~~~~~yv~Q~~~l~~------------------------ 195 (513)
.....|++.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0012466766665554
Q ss_pred --------CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 010314 196 --------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (513)
Q Consensus 196 --------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P 266 (513)
.+||.|++.|... . ....++.++|+.+||... .++ .+..|||||||||+|||||+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~-----~--~~~~~~~~~L~~vGL~~~~lgq------~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN-----I--PSIKRTLQVLHDVGLGYVKLGQ------PATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT-----C--HHHHHHHHHHHHTTGGGSBTTC------CSTTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHhhCCHHHHHHHHhc-----c--hhHHHHHHHHHHcCCchhhccC------CccCCCHHHHHHHHHHHHHhhCC
Confidence 3677887765321 1 123457789999999753 233 45699999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 267 ---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 267 ---~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
+||||||||+|||+.++..+++.|++++++|.|||+++|+. +.+ ..||+|++| ++|++++.|+++++..
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 79999999999999999999999999998899999988875 455 569999999 8999999999998753
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-32 Score=293.06 Aligned_cols=185 Identities=13% Similarity=0.120 Sum_probs=146.1
Q ss_pred eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEeCCCCCceEEEEcCCcc---cCCCCCHHH
Q 010314 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-E-VFVNGAKSEMPYGSYGFVERETT---LIGSLTVRE 201 (513)
Q Consensus 127 ~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G-~-I~i~G~~~~~~~~~~~yv~Q~~~---l~~~lTV~E 201 (513)
.++|+.+++|++++|+||||||||||+|+|+|+.+++ +| + |.++|. ..+.++|++|+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~----~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD----PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC----ccCCeeeeccchhhcccccccchhh
Confidence 3799999999999999999999999999999999886 49 8 999983 2456899999984 345679999
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-C
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE--LVMRPHV----LFIDE-P 274 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra--L~~~P~i----LllDE-P 274 (513)
|+ |+....... ...+++.++++.+|+.+..+ + .+|||||||||+|||+ |+.+|++ ||||| |
T Consensus 202 ni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~--~------~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 202 PT-WGQSLTSGA---TLLHNKQPMVKNFGLERINE--N------KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp TT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGG--C------HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred hh-cccccccCc---chHHHHHHHHHHhCCCcccc--h------hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 88 542211111 11223556778888876654 2 4899999999999999 9999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh--H---HHHhcCCE-----EEEEe-CCeEEEEeChHHH
Q 010314 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS--T---EVFGLFDR-----ICLLS-NGNTLFFGETLAC 335 (513)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~--~---~i~~~~D~-----v~vL~-~G~iv~~G~~~~~ 335 (513)
|++||+. ...+.+++++ .+.|+|+++|+.. - ++..+||+ |++|+ +|+++ .|+++++
T Consensus 270 ts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 270 ISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp GGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred ccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 9999999 4444444443 3778888888864 1 56789999 99999 99999 8988765
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-29 Score=260.01 Aligned_cols=202 Identities=13% Similarity=0.079 Sum_probs=141.7
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----------------------------------CCcee
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-----------------------------------ARMYG 168 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~-----------------------------------~~~~G 168 (513)
.+++++++.+.+| +++|+|||||||||||++|+++.... ..-.|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 99999999999999999998876521 01148
Q ss_pred EEEECCEeCCC------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC-----------------------Cc-----
Q 010314 169 EVFVNGAKSEM------PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-----------------------GF----- 214 (513)
Q Consensus 169 ~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-----------------------~~----- 214 (513)
++++||++... ....+++++|++.++.. +..+...|.-..... ..
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999987532 11237999998766533 444433322110000 00
Q ss_pred -------------------------------hhhHHHHHHHHHHHcCChhHH----------------hh---hhcCC--
Q 010314 215 -------------------------------FCQRKNVVEDAIHAMSLSDYA----------------NK---LIGGH-- 242 (513)
Q Consensus 215 -------------------------------~~~~~~~v~~~l~~~~L~~~~----------------~~---~vg~~-- 242 (513)
.......+.+.++.+++.... ++ .+..+
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344445555543210 00 01000
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCC
Q 010314 243 ---CYMKG-LPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (513)
Q Consensus 243 ---~~~~~-LSGGqrqRv~IAraL~~~P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (513)
..+.. |||||||||+||++|+.+| +||||||||+|||+.++..|.+.|++++ +|.|||+++|++ ++...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 01112 7999999999999999999 9999999999999999999999999998 689999988885 4567899
Q ss_pred EEEEE----eCCeEEEEe
Q 010314 317 RICLL----SNGNTLFFG 330 (513)
Q Consensus 317 ~v~vL----~~G~iv~~G 330 (513)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=234.01 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=76.0
Q ss_pred CCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCE
Q 010314 244 YMKGLPCGERRRVRIARELV------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++++.|.|||+++|+. . ....||+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~-~-~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR-E-FSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH-H-HHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch-H-HHHhCCE
Confidence 56689999999999999999 69999999999999999999999999999988899999988886 3 3778999
Q ss_pred EEEEeCCeEEE
Q 010314 318 ICLLSNGNTLF 328 (513)
Q Consensus 318 v~vL~~G~iv~ 328 (513)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-29 Score=238.60 Aligned_cols=141 Identities=20% Similarity=0.202 Sum_probs=97.5
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC--EeCCCCCceEEEEcCCcccCCCCCH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G--~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (513)
.+.+|+|+ ++|++++|+||||||||||+++|+|+ +|++ |+|.... .+.....+.++|++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~---G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS---KQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHT---TSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcC---CeeeeEEecCCchhhhcceEEecCCH--------
Confidence 34688886 89999999999999999999999999 8864 7773211 11112235689999975
Q ss_pred HHHH-HHHH----HhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010314 200 REYL-YYSA----LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (513)
Q Consensus 200 ~E~l-~~~~----~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP 274 (513)
+||+ .+.. .+... ...+.++++++. +| ||||||+|||||+.+|+|||||||
T Consensus 76 ~enl~~~~~~~~~~~~~~----~~~~~~~~~l~~------------------gl--Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDM----VEPEVIPKLMEA------------------GI--VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp ----CTTTHHHHHHHTTT----SCTTHHHHHHHT------------------TS--EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred HHHHHHHHHHHHHHHHHh----ccHHHHHHHHHh------------------CC--chHHHHHHHHHHhcCCCEEEEeCC
Confidence 4444 2210 01000 011223333332 22 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
|+| ++..++++|+++ ++|+||| ++|+..
T Consensus 132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred ccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999 889999999998 6688999 889863
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-25 Score=226.44 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=73.0
Q ss_pred CCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEE-
Q 010314 244 YMKGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI- 318 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v- 318 (513)
.+..|||||||||+||++|+ .+|+||||||||++||+..+..+++.|+++. +|.+||+++|++ ++..+||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 45689999999999999997 5789999999999999999999999999985 578999988885 467899987
Q ss_pred -EEEeCCeE-EEEeChHH
Q 010314 319 -CLLSNGNT-LFFGETLA 334 (513)
Q Consensus 319 -~vL~~G~i-v~~G~~~~ 334 (513)
++|.+|.. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 78887764 33344433
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-26 Score=215.48 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=99.3
Q ss_pred eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccC-CCCCHHHHHHHH
Q 010314 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI-GSLTVREYLYYS 206 (513)
Q Consensus 128 ~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~E~l~~~ 206 (513)
||||.+++||+++|+||||||||||++++.+ |...+++. ...++++|++.-. ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d------~~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSD------FCRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHH------HHHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccH------HHHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999998653 21112111 0124555543210 0001111111
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----
Q 010314 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV----- 281 (513)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~----- 281 (513)
. ..+.....+.....+. ....||||||||+|||+|+.+|++|+|||||++||+.
T Consensus 64 -------------~-~~~~~~~~g~~~~~~~-------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 -------------Y-IVSKRLQLGKLTVVDA-------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp -------------H-HHHHHHHTTCCEEEES-------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred -------------H-HHHHHHhCCCeEEEEC-------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 1111222344333332 2356999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHHHHHHHcCCeEEEEEeCChHHHH
Q 010314 282 -----------SALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (513)
Q Consensus 282 -----------~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (513)
.+..+++.|++++++|.|+|+++|+. +++.
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP-EEVE 163 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH-HHHH
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH-HHhh
Confidence 56899999999987799999988876 4554
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-27 Score=250.36 Aligned_cols=177 Identities=12% Similarity=0.140 Sum_probs=137.2
Q ss_pred cceeeeeeeeEEeCCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 010314 122 SDKVVKSSNGYALPGT--------------------MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge--------------------~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (513)
.+.+|++||+.+++|+ ++||+||||||||||+|+|+|+.+|+. |+|.++|.+.. +
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~---GsI~~~g~~~t--~ 109 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE---GAAKTGVVEVT--M 109 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST---TSCCCCC------C
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC---ceEEECCeecc--e
Confidence 4568999999999999 999999999999999999999999875 99999987542 1
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH--HHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG--ERRRVRIA 259 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG--qrqRv~IA 259 (513)
.+|++|++ .++.+|+.|++.+.. + +..++++++.+++.+.. . .+ .|||| |+||+.||
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----~------~~~~~~~L~~~~L~~~~-~------~~-~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----T------NFPPDTYLEKMKFYEYD-F------FI-IISATRFKKNDIDIA 168 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----S------SCCHHHHHHHTTGGGCS-E------EE-EEESSCCCHHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----h------HHHHHHHHHHcCCCccC-C------eE-EeCCCCccHHHHHHH
Confidence 27888875 567889888764321 1 13467889999987542 2 12 39999 99999999
Q ss_pred HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC----CeEEEEEeCChH-HHHhcCCEEE
Q 010314 260 RELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-----STG----CTLLFTINQSST-EVFGLFDRIC 319 (513)
Q Consensus 260 raL~~----------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~tvi~t~h~~~~-~i~~~~D~v~ 319 (513)
++|+. +|++++|||||+|||+..+.++++.|+++. +.| .+|++++|.... .+.++||++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999985 323 456676665431 2777787774
Q ss_pred -EEeCC
Q 010314 320 -LLSNG 324 (513)
Q Consensus 320 -vL~~G 324 (513)
.|..|
T Consensus 249 ~~Lpeg 254 (413)
T 1tq4_A 249 SDLPIY 254 (413)
T ss_dssp HHSCGG
T ss_pred HhCccc
Confidence 34333
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-25 Score=209.35 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=102.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (513)
.++|+||||||||||+++|+|++.. ...|... .... ...+.++|++|+. ++.+++ + .....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~---~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F---SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E---EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H---HhhcC--
Confidence 5899999999999999999999742 1233221 1111 2235689999975 222222 0 00000
Q ss_pred hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHH
Q 010314 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE-----LVMRPHVLFIDE--PLYHLDSVSALLMMV 288 (513)
Q Consensus 216 ~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra-----L~~~P~iLllDE--PTsgLD~~~~~~i~~ 288 (513)
.-.+..+ .++..||||||||++||++ |+.+|++||||| ||++||+..+..+.+
T Consensus 65 --------------~~~~~~~------~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 65 --------------TSKKLVG------SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp --------------CCSSEET------TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred --------------Ccccccc------ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 0001222 2455899999999999996 999999999999 999999999999988
Q ss_pred HHHHHHHcCCeEEEEEe--CChHHHHhcCCEEEEEeCCeEEE
Q 010314 289 TLKKLASTGCTLLFTIN--QSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 289 ~L~~l~~~g~tvi~t~h--~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
.|++ .+.|+|+++| |+...+..+||+ .+|+++.
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 8865 4677888887 677788889998 4566654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-25 Score=222.18 Aligned_cols=172 Identities=14% Similarity=0.079 Sum_probs=134.0
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCcc-c
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-L 193 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l 193 (513)
+.++|+.+++|++++|+||||||||||+++|+|++++.+ |+|.++|.+.... ...++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 357888899999999999999999999999999998865 9999999764321 135899999988 8
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEE
Q 010314 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFI 271 (513)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~--iLll 271 (513)
+|.+||+|++.++.... . . ..+++.+|+.+..+++++ +|| |||++|||+|+.+|+ +|+|
T Consensus 167 ~~~~~v~e~l~~~~~~~--~---d-----~~lldt~gl~~~~~~~~~------eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG--Y---D-----VVLCDTSGRLHTNYSLME------ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp CHHHHHHHHHHHHHHTT--C---S-----EEEECCCCCSSCCHHHHH------HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHcC--C---c-----chHHhcCCCCcchhHHHH------HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 89999999998754211 0 0 124567788776666554 899 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCCh--------HHHHhcCCEEEEEeCCeE
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSS--------TEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~--------~~i~~~~D~v~vL~~G~i 326 (513)
| ||+|||+..+ ++++.+ .|.|+|++||.+. ..+....+.|.++..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999998865 345553 5899999888432 344556778899988864
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-27 Score=225.54 Aligned_cols=177 Identities=12% Similarity=0.091 Sum_probs=120.4
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCCCceEEEEcCCcccCCCCCHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
..+++| ..+++|++++|+||||||||||+|+|+|+++. +.+.+.+.+.+. ....+.++|++|++.+|+.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 346777 68899999999999999999999999999862 223332222221 112356899999988888888877
Q ss_pred HHHHHHHh----cC-CCchhhHHHHHHHH------HHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 010314 202 YLYYSALL----QL-PGFFCQRKNVVEDA------IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270 (513)
Q Consensus 202 ~l~~~~~~----~~-~~~~~~~~~~v~~~------l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLl 270 (513)
++.+.... .. .....+.++++++. ++.+|+.+..++. ++.|| +|+.+|++++
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~------~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM------PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC------TTSEE-----------EEEECSCHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc------CCcEE-----------EEEECCCHHH
Confidence 76321000 00 01112233445554 5666776666664 44888 9999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 271 IDEPLYHL----DSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 271 lDEPTsgL----D~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
|||||+|| |+..+.++.++++++++ .|.|+|+++|+. +++..+||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999975 589999987765 68999999999984
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-27 Score=238.64 Aligned_cols=169 Identities=12% Similarity=0.114 Sum_probs=127.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.|+++||++.|. ..+|+++|+.|++|++++|+||||||||||+++|+|++ . |+|.
T Consensus 101 ~i~~~~vs~~y~------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~---G~I~------------- 155 (305)
T 2v9p_A 101 FFNYQNIELITF------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---G---GSVL------------- 155 (305)
T ss_dssp HHHHTTCCHHHH------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---T---CEEE-------------
T ss_pred eEEEEEEEEEcC------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---C---ceEE-------------
Confidence 377888988773 36999999999999999999999999999999999998 2 8883
Q ss_pred EEEcCCcccCCCCCHHH-HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 185 GFVERETTLIGSLTVRE-YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E-~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
+|++|++.++.. |+++ |+.+. +.. ...+.+.++.+ |.+..+ +..|||||||| ||||+
T Consensus 156 ~~v~q~~~lf~~-ti~~~ni~~~-----~~~----~~~~~~~i~~~-L~~gld--------g~~LSgGqkQR---ARAll 213 (305)
T 2v9p_A 156 SFANHKSHFWLA-SLADTRAALV-----DDA----THACWRYFDTY-LRNALD--------GYPVSIDRKHK---AAVQI 213 (305)
T ss_dssp CGGGTTSGGGGG-GGTTCSCEEE-----EEE----CHHHHHHHHHT-TTGGGG--------TCCEECCCSSC---CCCEE
T ss_pred EEecCccccccc-cHHHHhhccC-----ccc----cHHHHHHHHHH-hHccCC--------ccCcCHHHHHH---HHHHh
Confidence 467888877764 7776 76442 110 11344555553 333222 34899999999 99999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHhHh
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 341 (513)
.+|+||| ||+||+.++..+..+ +|+. .....||+| +|++|++++.|+.+++...|..
T Consensus 214 ~~p~iLl----Ts~LD~~~~~~i~~l--------------tH~~--~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 214 KAPPLLV----TSNIDVQAEDRYLYL--------------HSRV--QTFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp CCCCEEE----EESSCSTTCGGGGGG--------------TTTE--EEEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred CCCCEEE----ECCCCHHHHHHHHHH--------------hCCH--HHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 9999999 999999998887621 4543 346789999 9999999999999887444443
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-23 Score=216.96 Aligned_cols=171 Identities=14% Similarity=0.080 Sum_probs=134.7
Q ss_pred eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCcc-cC
Q 010314 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-LI 194 (513)
Q Consensus 127 ~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l~ 194 (513)
..+|+.+++|++++|+||||||||||+++|+|++++.+ |+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC---CEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46888899999999999999999999999999998764 9999999764321 135899999988 88
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 010314 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFID 272 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~--iLllD 272 (513)
|.+|++|++.++.... . . ..+++.+|+.+..++++. +|| |||++|||+|+.+|+ +|+||
T Consensus 225 p~~tv~e~l~~~~~~~--~---d-----~~lldt~Gl~~~~~~~~~------eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG--Y---D-----VVLCDTSGRLHTNYSLME------ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHHTT--C---S-----EEEEECCCCSSCCHHHHH------HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhhHHHHHHHHHhCC--C---H-----HHHHHhcCCChhhhhHHH------HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999998764211 0 0 124566788776666554 899 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCC--------hHHHHhcCCEEEEEeCCeE
Q 010314 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQS--------STEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~--------~~~i~~~~D~v~vL~~G~i 326 (513)
||+|||+..+. +.+.+ .|.|+|++||.+ ...+....+.|.++..|+.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999988653 45553 489999988843 2344556778888888864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-24 Score=212.24 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (513)
.++|+||||||||||+|+|+|+.+|+. |+|.++|.+... ..+.++|++|++.+++.+||.||+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~---G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~---- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK---ASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN---- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC---CccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc----
Confidence 479999999999999999999998874 999999976532 23579999999999999999999977542221
Q ss_pred hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 010314 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (513)
Q Consensus 216 ~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~ 295 (513)
....+.+.+.++ ..+.+.+.. +|||||||||+||||++. ++|+|||+.|||+.. .+.++.+.+
T Consensus 77 ~~~~~~i~~~~~----~~~~~~~~~------~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 77 ENCWEPIEKYIN----EQYEKFLKE------EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp TTCSHHHHHHHH----HHHHHHHHH------HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HHHHHHHHHHHH----HHHHhhhHH------hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 111123333333 455666554 899999999999999886 999999999999987 556666665
Q ss_pred cCCeEEEEEeCC
Q 010314 296 TGCTLLFTINQS 307 (513)
Q Consensus 296 ~g~tvi~t~h~~ 307 (513)
. .+||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 7888888764
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=198.22 Aligned_cols=84 Identities=13% Similarity=0.010 Sum_probs=73.8
Q ss_pred CCC-CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHh
Q 010314 244 YMK-GLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (513)
Q Consensus 244 ~~~-~LSGGqrqRv~IAraL~---------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (513)
.++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++| +. .
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~-~--- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LA-P--- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CC-T---
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-cc-c---
Confidence 345 69999999999999999 8999999999999999999999999998874 57777666 42 3
Q ss_pred cCCEEEEEeCCeEEEEeChHHH
Q 010314 314 LFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 314 ~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
.||++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988754
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-24 Score=228.14 Aligned_cols=190 Identities=11% Similarity=0.027 Sum_probs=148.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~~- 179 (513)
..++++++++.|.. +..+|+++ +.+.+|++++|+||||||||||+++|+|+.+++ .|.|.++|+ +...
T Consensus 130 ~~l~~~~v~~~~~t----g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT----GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCC----SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHH
T ss_pred CceEEeccceecCC----CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHH
Confidence 35788888887741 35699999 999999999999999999999999999999887 499999997 3211
Q ss_pred ---------CCceEEEEcCC-cccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCC
Q 010314 180 ---------PYGSYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 ---------~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LS 249 (513)
..+.++|++|+ ..+++.+||.+|+.+.+...... .+ ....+.+. +..||
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-----~~---------~v~~~ld~-------l~~lS 260 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-----GQ---------HVLLIMDS-------LTRYA 260 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-----TC---------EEEEEEEC-------HHHHH
T ss_pred HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-----CC---------CHHHHHHh-------HHHHH
Confidence 12568999995 56677889999997755321000 00 00111121 23789
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----eEEEEEeCChHHHHhcCCEEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS---T-GC-----TLLFTINQSSTEVFGLFDRICL 320 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~t~h~~~~~i~~~~D~v~v 320 (513)
+|| |||+|| +.+|++ |+|||+.....+.+++.++.+ + |. ||++++|+.. ..+||++++
T Consensus 261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~ 327 (438)
T 2dpy_A 261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARA 327 (438)
T ss_dssp HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHH
T ss_pred HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEE
Confidence 999 999999 889988 999999999999999999875 3 64 8888778764 567999999
Q ss_pred EeCCeEEEEeChHHH
Q 010314 321 LSNGNTLFFGETLAC 335 (513)
Q Consensus 321 L~~G~iv~~G~~~~~ 335 (513)
|.+|+++..|++.+.
T Consensus 328 l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 328 ILDGHIVLSRRLAEA 342 (438)
T ss_dssp HSSEEEEECHHHHHT
T ss_pred EeCcEEEEeCCHHHc
Confidence 999999999887654
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-22 Score=207.94 Aligned_cols=129 Identities=18% Similarity=0.157 Sum_probs=104.6
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCceEEEEcCCcccCCCCCHHH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
+++++++.+++|++++|+||||||||||+++|+|+++|+. |.|.++|.+.-. ..+.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~---g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE---RIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTS---CEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---cEEEECCeeccccccchhEEEEEe-------------
Confidence 7899999999999999999999999999999999999874 999998853100 001111111
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~ 281 (513)
+ |||+||++||+||..+|++|++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 282 ~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
.++.+.|+.+...+.|+|+++|... +...|||+++|.+|+
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2456778777644457899899874 678899999998875
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-25 Score=216.44 Aligned_cols=171 Identities=12% Similarity=0.115 Sum_probs=109.1
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------CCceEEEEcCCcccCCCC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------PYGSYGFVERETTLIGSL 197 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~l 197 (513)
.-|+||||.+++|++++|+||||||||||+++|+|++ | |+|.+ |.+... ....++|++|++.+|+.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 3699999999999999999999999999999999987 4 77888 654211 134688999987766543
Q ss_pred C-HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH-----HHHHhhCCCEEEE
Q 010314 198 T-VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI-----ARELVMRPHVLFI 271 (513)
Q Consensus 198 T-V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I-----AraL~~~P~iLll 271 (513)
+ +.+++.+. .+. ..........++++++...+. ..+ ..|||||+||++| |++|+.+|++++|
T Consensus 84 ~~~~~~l~~~-~~~-~~~~g~~~~~i~~~l~~~~~~-il~---------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 84 LKNEDFLEYD-NYA-NNFYGTLKSEYDKAKEQNKIC-LFE---------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HHTTCEEEEE-EET-TEEEEEEHHHHHHHHHTTCEE-EEE---------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hhccchhhhh-hcc-cccCCCcHHHHHHHHhCCCcE-EEE---------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 2 11111100 000 000011123466666654321 111 3799999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
||||+++|..+...+.+.|.++.++ .+ .+| ...||.|+++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~-~~---~~h------~~~~d~iiv~~~ 193 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIE-LH---EAN------LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHH-HH---HHT------TSCCSEEEECSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH-HH---hhc------ccCCCEEEECCC
Confidence 9999999999999999999887542 23 123 145777776653
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=190.02 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=69.3
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCE
Q 010314 244 YMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 244 ~~~~LSGGqrq------Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.+.|.|||+++|++ ++...||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 45789999999 67778888889999999999999999999999999999987788999988884 57889999
Q ss_pred EEEEe
Q 010314 318 ICLLS 322 (513)
Q Consensus 318 v~vL~ 322 (513)
+++|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-21 Score=219.43 Aligned_cols=162 Identities=22% Similarity=0.235 Sum_probs=124.4
Q ss_pred HHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch-------hhHHHHHH
Q 010314 151 TLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-------CQRKNVVE 223 (513)
Q Consensus 151 TLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-------~~~~~~v~ 223 (513)
|+..|..+++.+.. |+|+++|+++. -+..+||.+++.|...+.+.... ........
T Consensus 383 ~C~~C~g~rl~~~~---~~V~i~G~~i~--------------~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (916)
T 3pih_A 383 TCSVCGGRRLNREA---LSVKINGLNIH--------------EFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL 445 (916)
T ss_dssp ECTTTCSCCBCTTG---GGEEETTEEHH--------------HHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred cchhcccccCChHh---cCcEECCccHH--------------HhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence 34455556666654 89999987642 13457888988775444332211 01112345
Q ss_pred HHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 010314 224 DAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300 (513)
Q Consensus 224 ~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~--iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tv 300 (513)
+.|..+||... .++.+ .+|||||||||+|||+|+.+|+ ||||||||+|||+.....++++|++|++.|.||
T Consensus 446 ~~L~~vgL~~l~l~r~~------~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv 519 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSA------TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519 (916)
T ss_dssp HHHHTTTCTTCBTTSBG------GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHcCCccccccCCc------ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 67788898764 45544 4999999999999999999887 999999999999999999999999998889999
Q ss_pred EEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 301 LFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 301 i~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
|+++|+. +.+ ..||+|++| ++|++++.|+++++..
T Consensus 520 ivVtHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 520 IVVEHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EEECCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EEEeCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9988875 444 559999999 8999999999998754
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.7e-24 Score=215.01 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=110.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeE-----------------------EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGY-----------------------ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~-----------------------i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
..+.++||++.|. ++++++++. +++|+++||+||||||||||+++|+|++
T Consensus 42 ~~i~~~~v~~~y~-------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 42 EQIDLLEVEEVYL-------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCCHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeehhhhhh-------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4578888887762 345555543 7899999999999999999999999998
Q ss_pred CCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhc
Q 010314 161 PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240 (513)
Q Consensus 161 ~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg 240 (513)
++.. |. ..++|++|++.+++. |+.||+.+......+. ....+.+.+.++.++ .+..+.
T Consensus 115 ~~~~---G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~--~~d~~~~~~~L~~l~-~~~~~~--- 172 (312)
T 3aez_A 115 ARWD---HH------------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFPE--SYNRRALMRFVTSVK-SGSDYA--- 172 (312)
T ss_dssp HTST---TC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGG--GBCHHHHHHHHHHHH-TTCSCE---
T ss_pred cccC---CC------------CeEEEEecCccCCcc-cHHHHHHHHHhcCCCh--HHHHHHHHHHHHHhC-CCcccC---
Confidence 8752 32 358999999999988 9999985421111111 223456777888776 433333
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010314 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (513)
Q Consensus 241 ~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~ 280 (513)
.+..|||||+||++||++++.+|+|||||||+..+|+
T Consensus 173 ---~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 173 ---CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp ---EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ---CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 3348999999999999999999999999999999986
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-21 Score=206.26 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=119.3
Q ss_pred eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHh
Q 010314 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (513)
Q Consensus 130 s~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (513)
++.+.+|++++|+|+||||||||+++++|..++. |+ +.+.|++|++. ..+.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~------------~vi~~~~ee~~----~~l~~~~---~-- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE------------RAILFAYEESR----AQLLRNA---Y-- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC------------CEEEEESSSCH----HHHHHHH---H--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC------------CEEEEEEeCCH----HHHHHHH---H--
Confidence 5689999999999999999999999999997764 32 12345566531 1222222 1
Q ss_pred cCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHH
Q 010314 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV-----SAL 284 (513)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~-----~~~ 284 (513)
+.... +++ +...|+..+.+. +|..|||||+||+++|+++..+|++||+| ||+|||.. .+.
T Consensus 330 ~~g~~-------~~~-~~~~g~~~~~~~------~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 330 SWGMD-------FEE-MERQNLLKIVCA------YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp TTSCC-------HHH-HHHTTSEEECCC------CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred HcCCC-------HHH-HHhCCCEEEEEe------ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 11111 112 234555554443 45689999999999999999999999999 99999999 999
Q ss_pred HHHHHHHHHHHcCCeEEEEEeCCh---------HHHHhcCCEEEEEeCCe
Q 010314 285 LMMVTLKKLASTGCTLLFTINQSS---------TEVFGLFDRICLLSNGN 325 (513)
Q Consensus 285 ~i~~~L~~l~~~g~tvi~t~h~~~---------~~i~~~~D~v~vL~~G~ 325 (513)
.+.++++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999999888999999999861 35678999999999886
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-21 Score=195.81 Aligned_cols=183 Identities=14% Similarity=0.063 Sum_probs=116.5
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCC--CCceEEEEcCCcccCCCCCH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G-~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (513)
..+|+++++.+++|++++|+||||||||||++.|+|...+.. | .|.+.+..... ..+++.++.+... +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~---G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM---GKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS---CCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc---CCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 458999999999999999999999999999999999987653 6 66543321110 0011222222211 122
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC--
Q 010314 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE-RRRVRIARELVMRPHVLFIDEPLY-- 276 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq-rqRv~IAraL~~~P~iLllDEPTs-- 276 (513)
.+++.... + ...+..+.++++++..++. .. ..+..+|.+| +||+. |+++..+|++||+||||+
T Consensus 95 ~~~l~~~~-~----~~~~~~~~~~~~l~~~~l~--i~------~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 95 SDSLKREI-I----ENGKFDQWFDELFGNDTFH--LY------DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp CHHHHHHH-H----HHTHHHHHHHHHHSSSCEE--EE------CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred ccccccCC-C----CHHHHHHHHHHHhccCCEE--EE------CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 23332211 0 0011222333333322221 11 1234689998 66666 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHHc-CCeEEEEEeCC-hH--------------------HHHhcCCEEEEEeCCeE
Q 010314 277 -H---LDS-VSALLMMVTLKKLAST-GCTLLFTINQS-ST--------------------EVFGLFDRICLLSNGNT 326 (513)
Q Consensus 277 -g---LD~-~~~~~i~~~L~~l~~~-g~tvi~t~h~~-~~--------------------~i~~~~D~v~vL~~G~i 326 (513)
+ +|. .....+++.|++++++ |+|||+++|.. .. .+..+||+|++|++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 6778899999999865 99999988885 23 67889999999998874
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-20 Score=201.75 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=69.8
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 245 MKGL-PCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 245 ~~~L-SGGqrqRv~IAraL~~~P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |.|||+++|++ . +...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~-~-~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA-Q-IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH-H-HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-H-HHHhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 89999988885 3 45679999999
Q ss_pred eCC
Q 010314 322 SNG 324 (513)
Q Consensus 322 ~~G 324 (513)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.6e-23 Score=221.77 Aligned_cols=166 Identities=16% Similarity=0.135 Sum_probs=123.5
Q ss_pred cceeeeeeee-EEeCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEeCCC----CCceEEEEcCCcccC
Q 010314 122 SDKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLI 194 (513)
Q Consensus 122 ~~~iL~~vs~-~i~~Ge~~aliGpsGsGKSTLl~~--L~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~ 194 (513)
+..+|++|++ .+++|++++|+||||||||||+++ ++|+.+|+. |.|+++|.+... ..+.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~---g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE---PGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4569999999 999999999999999999999999 789988764 999999975311 124578888875432
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010314 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP 274 (513)
+. +.+ +..... ....++++.++|.+..++.+. .||||| |+++++|||
T Consensus 101 ~~------l~~---~~~~~~-----~~~~~~l~~~~l~~~~~~~~~------~LS~g~-------------~~~lilDe~ 147 (525)
T 1tf7_A 101 GK------LFI---LDASPD-----PEGQEVVGGFDLSALIERINY------AIQKYR-------------ARRVSIDSV 147 (525)
T ss_dssp TS------EEE---EECCCC-----SSCCSCCSSHHHHHHHHHHHH------HHHHHT-------------CSEEEEECS
T ss_pred Cc------EEE---EecCcc-----cchhhhhcccCHHHHHHHHHH------HHHHcC-------------CCEEEECCH
Confidence 11 100 111000 001223455566666666554 788875 779999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHH--------HHhcCCEEEEEeC
Q 010314 275 LY-----HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE--------VFGLFDRICLLSN 323 (513)
Q Consensus 275 Ts-----gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~--------i~~~~D~v~vL~~ 323 (513)
|+ +||+..+..++++++.+++.|+|||+++|+.... +..+||+|++|++
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999988899999999987532 3456999999998
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-21 Score=223.19 Aligned_cols=173 Identities=19% Similarity=0.157 Sum_probs=120.7
Q ss_pred ceEEEEe-----EEEEEeccccccceeeeeeeeEEeC-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE
Q 010314 104 ASVVWKD-----LTVTIKGKRRYSDKVVKSSNGYALP-------GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171 (513)
Q Consensus 104 ~~l~~~~-----ls~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~ 171 (513)
..+.++| |++.|. ..+.+++|+++.+.+ |++++|+||||||||||||+| |++.+.
T Consensus 749 ~~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~-------- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM-------- 815 (1022)
T ss_dssp CCEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------
T ss_pred ceEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------
Confidence 3589999 888773 234699999999987 999999999999999999999 987531
Q ss_pred ECCEeCCCCCceEE-EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH
Q 010314 172 VNGAKSEMPYGSYG-FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 172 i~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG 250 (513)
.++| ||||+.. .+||.+++.. .+|+.+..... ...+|+
T Consensus 816 ----------aqiG~~Vpq~~~---~l~v~d~I~~----------------------rig~~d~~~~~------~stf~~ 854 (1022)
T 2o8b_B 816 ----------AQMGCYVPAEVC---RLTPIDRVFT----------------------RLGASDRIMSG------ESTFFV 854 (1022)
T ss_dssp ----------HTTTCCEESSEE---EECCCSBEEE----------------------ECC---------------CHHHH
T ss_pred ----------hheeEEeccCcC---CCCHHHHHHH----------------------HcCCHHHHhhc------hhhhHH
Confidence 2244 8888753 3455554410 12222222221 125677
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEE-
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSA-LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL- 327 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~-~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv- 327 (513)
|+++ +++|++++.+|+++||||||+|+|+... ..++.+|+.++++ |.++|++||+. +.+..++|++.++ +|++.
T Consensus 855 em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~ 931 (1022)
T 2o8b_B 855 ELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMAC 931 (1022)
T ss_dssp HHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEE
T ss_pred HHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEE
Confidence 7664 9999999999999999999999999884 5578999999876 89999988876 5777889999887 48887
Q ss_pred -EEeChH
Q 010314 328 -FFGETL 333 (513)
Q Consensus 328 -~~G~~~ 333 (513)
+.|++.
T Consensus 932 ~~~~~~~ 938 (1022)
T 2o8b_B 932 MVENECE 938 (1022)
T ss_dssp C------
T ss_pred EEecCcc
Confidence 455543
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-21 Score=192.52 Aligned_cols=177 Identities=11% Similarity=0.052 Sum_probs=107.6
Q ss_pred ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHH
Q 010314 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200 (513)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 200 (513)
+.+.+|+|+||.+++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999975 333333 1235689999985 77789999
Q ss_pred HHHHHHHHhcC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010314 201 EYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (513)
Q Consensus 201 E~l~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD 279 (513)
+++.+...... ........+.+.+.++.+ .+..+. .+..||+||+||+.+ ++++.+|+++|+|||...+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~------~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTV------EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCE------EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCe------ecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 99876432111 111111223344555443 222233 345899999999988 58888999999999998888
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 280 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 280 ~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
.. +.++ .+.+|++++|........+++++ .+|+ +.+++..
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 64 1222 37789988886443333445444 5564 4555544
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=207.61 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=112.6
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCccc
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--------AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L--------~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l 193 (513)
.+.+++|+++.+.+|++++|+||||||||||||+| .|...|.. +.. ++.+ +.+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~---~~~-------------~~~~---d~i 708 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE---SAE-------------VSIV---DCI 708 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEE---EEE-------------EECC---SEE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccc---ccc-------------chHH---HHH
Confidence 35689999999999999999999999999999999 45433321 100 1110 001
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEE
Q 010314 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFI 271 (513)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL--~~~P~iLll 271 (513)
+ ..+|+.+.. ..++|+|+++++.+|++| +.+|+++||
T Consensus 709 ~--------------------------------~~ig~~d~l---------~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 709 L--------------------------------ARVGAGDSQ---------LKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp E--------------------------------EECC------------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred H--------------------------------HhcCchhhH---------HHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 1 112222111 127888888888888888 999999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 272 DEPLYHLDSVSALLM-MVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 272 DEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
||||+|||+.....+ +.+++.+.+ .|.++|++||+. ++..+||++..|.+|++.+.++.+++
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999998888 677788876 499999999884 56789999999999999988876654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=204.03 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=109.9
Q ss_pred CCCCHHHHHHHHHHhcCCCch--------hhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 195 GSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
..+||.|++.|...+.++... .+..+++ +.|..+||..+ .++.+ ..|||||+|||+||++|..+
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~------~tLSGGEkQRV~LA~aL~~~ 522 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA------GTLSGGEAQRIRLATQIGSR 522 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG------GGCCHHHHHHHHHHHHHTTC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc------ccCCHHHHHHHHHHHHHhhC
Confidence 358999999997776655421 1233444 45888999764 56654 49999999999999999998
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHH
Q 010314 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (513)
Q Consensus 266 P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (513)
| +||||||||+|||+.....++++|++|++.|.|||+++|+. +.+ ..||+|++| ++|++++.|+++++.
T Consensus 523 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 523 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HHH-HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 5 99999999999999999999999999988899999988875 444 579999999 799999999998764
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-21 Score=201.58 Aligned_cols=185 Identities=15% Similarity=0.117 Sum_probs=132.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (513)
.++.+++++.|.. +..+|+++ +.+.+|++++|+||||||||||+++|+|+.+++ .|.|.+.|++..
T Consensus 45 ~i~~~~l~~~~~t----g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFIL----GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFL 116 (347)
T ss_dssp STTCCCCCSEECC----SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred CeeecccceecCC----CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHH
Confidence 4667788888741 35699999 999999999999999999999999999999887 499999886410
Q ss_pred -C-----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-Hhh----hhcCCCCCCC
Q 010314 179 -M-----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANK----LIGGHCYMKG 247 (513)
Q Consensus 179 -~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~----~vg~~~~~~~ 247 (513)
. ..+.+.++.|.+. +..+.+. ..+..+.+.++ .+. ..- .+.+..
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~-----~~~~r~~-------------------~~~~~~~~ae~~~~~~~~vl~~-ld~~~~ 171 (347)
T 2obl_A 117 ALLPQSTLSKCVLVVTTSDR-----PALERMK-------------------AAFTATTIAEYFRDQGKNVLLM-MDSVTR 171 (347)
T ss_dssp TTSCHHHHTTEEEEEECTTS-----CHHHHHH-------------------HHHHHHHHHHHHHTTTCEEEEE-EETHHH
T ss_pred HhhhhhhhhceEEEEECCCC-----CHHHHHH-------------------HHHHHHHHHHHHHhccccHHHH-HhhHHH
Confidence 0 0123566665421 2222221 11111111111 110 000 023458
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-----eEEEEEeCChHHHHhcCCEEEE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICL 320 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~t~h~~~~~i~~~~D~v~v 320 (513)
||+|| |||++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++|+.. ..+||++++
T Consensus 172 lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~ 238 (347)
T 2obl_A 172 YARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRS 238 (347)
T ss_dssp HHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHH
T ss_pred HHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEE
Confidence 99999 899999 688887 999999999999999999874 476 7888777764 567999999
Q ss_pred EeCCeEEEEeChHHH
Q 010314 321 LSNGNTLFFGETLAC 335 (513)
Q Consensus 321 L~~G~iv~~G~~~~~ 335 (513)
|.+|+++..|+..+.
T Consensus 239 i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 239 ILDGHIVLTRELAEE 253 (347)
T ss_dssp HCSEEEEBCHHHHTT
T ss_pred eeCcEEEEeCCHHHc
Confidence 999999999887654
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.9e-20 Score=206.28 Aligned_cols=170 Identities=16% Similarity=0.128 Sum_probs=124.5
Q ss_pred CCCCcHHHHHHHHHcCCCCC---C---CceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhc-------
Q 010314 144 PAKSGKSTLLRAIAGRLPHS---A---RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ------- 210 (513)
Q Consensus 144 psGsGKSTLl~~L~G~~~~~---~---~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~------- 210 (513)
.+..||++|.+.+....-|. . ...|+|.++|+++.. ...+++.|.+.|...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~--------------~~~~~v~e~~~~~~~~~~~~~~~~ 335 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITE--------------LSRLPLARVSELLRPYAEEREPGH 335 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHH--------------HHHSBHHHHHHHHHHHHTTCSSCS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHH--------------HhhcCHHHHHHHHHhhhhhhhhcc
Confidence 35568999999887742221 0 134788888875321 01234555444433221
Q ss_pred -----CCCc--------hhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCC
Q 010314 211 -----LPGF--------FCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP--HVLFIDEP 274 (513)
Q Consensus 211 -----~~~~--------~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P--~iLllDEP 274 (513)
+... ..+...+++ .+..+||.++ .++.+ ..|||||||||+||++|+.+| .|||||||
T Consensus 336 ~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~------~tLSGGe~QRV~LA~aL~~~p~~~llILDEP 408 (842)
T 2vf7_A 336 AERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRST------PTLSPGELQRLRLATQLYSNLFGVVYVLDEP 408 (842)
T ss_dssp TTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBG------GGSCHHHHHHHHHHHHTTTCCCSCEEEEECT
T ss_pred cchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCc------CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCc
Confidence 0000 023344555 6788999865 56644 499999999999999999999 59999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHH
Q 010314 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (513)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (513)
|+|||+.....++++|++|++.|.|||+++|+. + +...||+|++| ++|++++.|+++++.
T Consensus 409 T~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 409 SAGLHPADTEALLSALENLKRGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999999999999999999998899999988875 3 55789999999 799999999988754
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-20 Score=177.48 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=93.8
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC----CceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHH
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA----RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~----~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (513)
+-+++|++++|+||||||||||+++|+|...+.. ...|.|++++... .....+++++|...+++. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~-- 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EVLKHIY-- 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-CCHHHHHHHHHHTTSCHH-HHHHTEE--
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC-CCHHHHHHHHHHcCCCHH-HHhhcEE--
Confidence 5789999999999999999999999999544311 0124555554321 000112222222222111 1222111
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH-HHHHHHHHHHhh-------CCCEEEEeCCCCCC
Q 010314 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE-RRRVRIARELVM-------RPHVLFIDEPLYHL 278 (513)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq-rqRv~IAraL~~-------~P~iLllDEPTsgL 278 (513)
+....++++ ++.+..+++++. +|++|++||||++|
T Consensus 96 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 96 -------------------------------------VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp -------------------------------------EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred -------------------------------------EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 112334433 333566666665 99999999999999
Q ss_pred CHH-------H-----HHHHHHHHHHHHH-cCCeEEEEEeCCh---HHHHhcCCEEEEEeCCe
Q 010314 279 DSV-------S-----ALLMMVTLKKLAS-TGCTLLFTINQSS---TEVFGLFDRICLLSNGN 325 (513)
Q Consensus 279 D~~-------~-----~~~i~~~L~~l~~-~g~tvi~t~h~~~---~~i~~~~D~v~vL~~G~ 325 (513)
|+. . ...+++.|+++++ .|.|||+++|... ..+...||++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 2 2378888888865 4999999888432 24778999999998753
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=158.66 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=72.5
Q ss_pred CCCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCE
Q 010314 244 YMKGLPCGERRRVRIA------RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IA------raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
.+..|||||||||+|| |+|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||+++|+. ++..+||+
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCE
Confidence 4569999999999876 899999999999999999999999999999999987789999999886 46789999
Q ss_pred EEEE--eCCeE
Q 010314 318 ICLL--SNGNT 326 (513)
Q Consensus 318 v~vL--~~G~i 326 (513)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-19 Score=180.24 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=97.9
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
.+|+++| +++|++++|+||||||||||+++|+|+++|. .+|+|.++|.+.. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 4899999 8999999999999999999999999998774 1399999886532 223321000
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
. . . ..+++.. ..| |++||++|..+|++|++|||| |+.+.
T Consensus 75 -----v--~----q---------~~~gl~~------------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 75 -----V--N----Q---------REVGEDT------------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp -----E--E----E---------EEBTTTB------------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred -----e--e----H---------HHhCCCH------------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 0 0 0 0122211 123 899999999999999999999 98886
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 284 ~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
..++ +. +..|.+|++++|+.. +...||++++|..
T Consensus 114 ~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 33 356999999999864 6788999988854
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-21 Score=184.19 Aligned_cols=146 Identities=19% Similarity=0.159 Sum_probs=113.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccC--CCCCHHHHHHHHHHhc
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI--GSLTVREYLYYSALLQ 210 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~~~ 210 (513)
.++|++++|+||||||||||+++|+|++++ .++|++|++.++ ..+|+.+++.+. +.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~--~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVN--YD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSC--TT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCC--CC
Confidence 358999999999999999999999998643 378999998776 567998886442 11
Q ss_pred CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------CC
Q 010314 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE----RRRVRIARELVMRPHVLFIDEPLYH-------LD 279 (513)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq----rqRv~IAraL~~~P~iLllDEPTsg-------LD 279 (513)
.+. ....+.+.++++.+++.+..+.. +..+|+|| +||+++|++++.+|.++++||||++ ||
T Consensus 61 ~~~--~~~~~~~~~~l~~~~~~~~~~~~------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld 132 (211)
T 3asz_A 61 HPD--AFDLALYLEHAQALLRGLPVEMP------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVD 132 (211)
T ss_dssp SGG--GBCHHHHHHHHHHHHTTCCEEEC------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEE
T ss_pred Chh--hhhHHHHHHHHHHHHcCCCcCCC------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEe
Confidence 111 22345677788888776554442 35899996 4789999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHH-HHcCCeEEEEEeCCh
Q 010314 280 SVSALLMMVTLKKL-ASTGCTLLFTINQSS 308 (513)
Q Consensus 280 ~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~ 308 (513)
+.....+.+.+++. .+.|.|++.++|+..
T Consensus 133 ~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 133 ADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999886 456889888788743
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-19 Score=182.91 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=107.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCcccCCCCCHHHHH
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
+|++++|+||||||||||+++|+|+++|++ |+|.+.|.+.... ...++|++|+..++|..||.+++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~---g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG---KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 699999999999999999999999999875 9999999874321 13589999999999989999999
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
.++..... . ..+++..|+.+..+.. ++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 178 ~~~~~~~~-d---------~~llDt~G~~~~~~~~---------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 178 QAMKARGY-D---------LLFVDTAGRLHTKHNL---------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHHTC-S---------EEEECCCCCCTTCHHH---------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHHhCCC-C---------EEEecCCCCCCchHHH---------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 76532110 0 0123334544333332 334448999999999999995444 4555555
Q ss_pred HHHHHHHHHHHHc-CCeEEEEEeCC
Q 010314 284 LLMMVTLKKLAST-GCTLLFTINQS 307 (513)
Q Consensus 284 ~~i~~~L~~l~~~-g~tvi~t~h~~ 307 (513)
..+++.++.+.+. |.|+|++||.+
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 6677777887654 89999989975
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.8e-19 Score=197.93 Aligned_cols=144 Identities=19% Similarity=0.151 Sum_probs=104.6
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
+.+++|+++. |++++|+||||||||||||+|+|+.. +.. |.+. ......+++++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~---G~~v------pa~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQV---GSFV------PAEEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTT---TCCB------SSSEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhccc---Ccee------ehhccceeeHHH---hhccCCHHH
Confidence 5789999999 99999999999999999999999863 332 5432 112234667665 555666665
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CC
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFIDEP---LY 276 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL--~~~P~iLllDEP---Ts 276 (513)
|+. .++|+|+++++.+|++| +.+|+++||||| |+
T Consensus 631 ~l~-----------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs 669 (765)
T 1ewq_A 631 DLA-----------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTS 669 (765)
T ss_dssp ---------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSC
T ss_pred HHH-----------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCC
Confidence 541 15799999999999999 999999999999 99
Q ss_pred CCCHHHH-HHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 277 HLDSVSA-LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 277 gLD~~~~-~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
+||..+. ..+++.|++ .|.++|++||+. +...++ .-.+.++++...
T Consensus 670 ~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 670 SLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEE
T ss_pred CcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEE
Confidence 9998875 567777765 588999988874 345555 222344444443
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-18 Score=195.15 Aligned_cols=145 Identities=15% Similarity=0.139 Sum_probs=99.5
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
.+.+++||++.+.+|++++|+||||||||||||+|+++.-... .|. ........+++ -+.++..+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq--~g~------~vpa~~~~i~~---~d~i~~~ig--- 724 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ--IGS------YVPAEEATIGI---VDGIFTRMG--- 724 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH--HTC------CBSSSEEEEEC---CSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh--cCc------cccchhhhhhH---HHHHHHhCC---
Confidence 4579999999999999999999999999999999986521100 010 00000011111 111222222
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~ 281 (513)
+.+..... ...+|+||+|++.|+++ +.+|+|+||||||+|||+.
T Consensus 725 -----------------------------~~d~l~~~------~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 725 -----------------------------AADNIYKG------RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred -----------------------------hHHHHHHh------HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 22222221 23789999999999999 8999999999999999999
Q ss_pred HHHHHH-HHHHHHHH-cCCeEEEEEeCChHHHHhcCCEE
Q 010314 282 SALLMM-VTLKKLAS-TGCTLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 282 ~~~~i~-~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v 318 (513)
....+. .+++.+.+ .|.|+|++||+. ++.+++|+.
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 999987 77888865 599999998885 455666654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-19 Score=183.58 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=84.6
Q ss_pred EeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCC--CCceEE
Q 010314 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGAKSEM--PYGSYG 185 (513)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~-~~~~~~~~G~I~i~G~~~~~--~~~~~~ 185 (513)
+||++.|. .+.++++++|.| +|+|+||+|||||+++|+|. ..+.. | |.++|.+... ....++
T Consensus 2 ~~l~~~~~-----~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~---g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQVH-----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER---V-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceEC-----CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCC---C-cccCCcccCCcceEeeEE
Confidence 36677663 456999999998 99999999999999999997 66653 7 8877765321 124578
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
+++|.+.+...+||.|++-++..... . ......+.. +.+..+..+ +++|||||||+.+||+++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~-~--e~~~~l~~~------l~~~~~~~~------~~~sgg~rqrv~~ara~~-- 129 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC-R--DCFKTIISY------IDEQFERYL------HDESGLNRRHIIDNRVHC-- 129 (301)
T ss_dssp EEEC---CCEEEEEEEEC--------------CTTHHHH------HHHHHHHHH------HHHTSSCCTTCCCCCCCE--
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc-H--HHHHHHHHH------HHHHHHHHH------HHhCHHhhhhhhhhhhhh--
Confidence 99998888888899888866432210 0 000111111 123334433 489999999999999986
Q ss_pred CCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHc-CCeEEEEEeCC
Q 010314 266 PHVLFIDEPLYH-LDSVSALLMMVTLKKLAST-GCTLLFTINQS 307 (513)
Q Consensus 266 P~iLllDEPTsg-LD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~ 307 (513)
+|++||||++ ||+... ++++++.+. +.++|++.|+.
T Consensus 130 --ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 130 --CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp --EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGG
T ss_pred --eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCC
Confidence 9999999985 999873 566666544 66777766664
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-18 Score=194.84 Aligned_cols=157 Identities=16% Similarity=0.095 Sum_probs=108.6
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
.+.+++|+++. ++|++++|+||||||||||||+|+|+..... .| .........+++++| +++.+++.+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q--~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY--IG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT--TT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh--cC------cccchhcccceeHHH---HHhhCCHHH
Confidence 35699999999 9999999999999999999999999743210 12 111111123555544 555666666
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~ 281 (513)
++... ...+|+|+++ ++.+..++.+|+++|||||++|+|+.
T Consensus 662 ~l~~~--------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 662 DLASG--------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred HHHhh--------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 55211 0145666654 44555578999999999999999998
Q ss_pred HHHHH-HHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 282 SALLM-MVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 282 ~~~~i-~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
....+ +.+++.+.+ .|.++|++||+. ++..+||++..+.+|++.+...
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEc
Confidence 77775 788888887 499999999886 3557899887788888776544
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-18 Score=163.94 Aligned_cols=169 Identities=11% Similarity=-0.012 Sum_probs=109.1
Q ss_pred ceeeeeeee-EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 123 DKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 123 ~~iL~~vs~-~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
...|+++.+ .+++|++++|+||||||||||++.|++...+.+ |.|.+.+.+ .+..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~--------------------~~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTE--------------------ESRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESS--------------------SCHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEcc--------------------cCHHH
Confidence 457888885 899999999999999999999999998765532 555553321 11111
Q ss_pred HHHHHHHhcCCCchhhHH--HHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCC
Q 010314 202 YLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYH 277 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~--~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~--iLllDEPTsg 277 (513)
.......+.......... ..++.....++ .. ......|.++.++...+.+...+|+ +|++||||++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 66 IIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-----DQ-----WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp HHHHHHHTTCCCGGGBTTTEEEEECCC---------CT-----TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred HHHHHHHhcchHHHHhhCCEEEEeccccccC-----ce-----eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 111110111100000000 00000000000 00 0112459999999988888888999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHHHH-cCCeEEEEEeCCh-------HHHHhcCCEEEEEeCC
Q 010314 278 L--DSVSALLMMVTLKKLAS-TGCTLLFTINQSS-------TEVFGLFDRICLLSNG 324 (513)
Q Consensus 278 L--D~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~-------~~i~~~~D~v~vL~~G 324 (513)
+ |+.....+++.|+++++ .|.|||+++|... ..+..+||+|++|+..
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 99999999999999975 5899999888762 3478899999999764
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-17 Score=161.08 Aligned_cols=150 Identities=13% Similarity=0.169 Sum_probs=103.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcC
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 211 (513)
-+++|++++|+||||||||||++.|++.... |.++ .|..... ...+.|+..++... .+.+.+. .+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~~-~g~~~~~-~~~v~~~~~e~~~~---~~~~r~~---~~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDL-LEVGELP-TGPVIYLPAEDPPT---AIHHRLH---ALGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCT-TCCCCCC-CCCEEEEESSSCHH---HHHHHHH---HHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCc-CCCccCC-CccEEEEECCCCHH---HHHHHHH---HHHh
Confidence 3679999999999999999999999986543 5553 3443211 23577776654320 1111111 1111
Q ss_pred CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HHHH
Q 010314 212 PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY--HLDSVS---ALLM 286 (513)
Q Consensus 212 ~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs--gLD~~~---~~~i 286 (513)
. .......++++.+++.+..+. .+..||+||+|++ ++++.+|++|++||||+ ++|... ...+
T Consensus 93 ~----~~~~~~~~~~~~l~l~~~~~~------~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 93 H----LSAEERQAVADGLLIQPLIGS------LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp T----SCHHHHHHHHHHEEECCCTTS------CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred h----cChhhhhhccCceEEeecCCC------CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 1 112335667788877665544 3458999998865 68889999999999999 999744 4888
Q ss_pred HHHHHHHH-HcCCeEEEEEeCC
Q 010314 287 MVTLKKLA-STGCTLLFTINQS 307 (513)
Q Consensus 287 ~~~L~~l~-~~g~tvi~t~h~~ 307 (513)
++.|++++ +.|+|||+++|+.
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 99999987 4599999977765
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-18 Score=180.29 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=99.4
Q ss_pred eeeeee-eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEeCCCCCceEEEEcCCcccCCCCC
Q 010314 124 KVVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSA-RMYGE-VFVNGAKSEMPYGSYGFVERETTLIGSLT 198 (513)
Q Consensus 124 ~iL~~v-s~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~-~~~G~-I~i~G~~~~~~~~~~~yv~Q~~~l~~~lT 198 (513)
..|+.+ .+.+++|++++|+||||||||||++.|++.. +|+. ...|. |++++.... ...++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 356665 6899999999999999999999999999987 4431 01267 777775321 11233444444333221 2
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh-------hCCCEEEE
Q 010314 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-------MRPHVLFI 271 (513)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~-------~~P~iLll 271 (513)
+.+|+.+. . ..-|.+++|++.++++++ .+|++||+
T Consensus 196 v~~ni~~~-----------------------------~---------~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 196 VLKHIYVA-----------------------------R---------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HGGGEEEE-----------------------------E---------CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HhhCEEEE-----------------------------e---------cCChHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 22222110 0 001456777777777777 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 272 DEPLYHLDSVS------------ALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 272 DEPTsgLD~~~------------~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||++||+.. ..++++.|+++++ .|+|||+++|... .+...++....+..|+++.++
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTT
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeec
Confidence 99999999852 4567777777765 4899999877653 444445555666667665443
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-19 Score=195.64 Aligned_cols=188 Identities=15% Similarity=0.102 Sum_probs=111.1
Q ss_pred eEEEEeEEEEEeccccccceeeeee----------eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceeEEEEC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSS----------NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVN 173 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~-~~~~~G~I~i~ 173 (513)
.+.++||+..|..+. +.+|+.+ ++.++. +||+|||||||||||++|+|+..| + +|.|+++
T Consensus 10 ~i~~~~l~~~~~~~~---r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQYEEKV---RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRC 80 (608)
T ss_dssp ----------CHHHH---HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCS
T ss_pred hhhhhhhhHHHHHHH---HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEc
Confidence 468889998885321 1233322 244443 999999999999999999999877 4 4999999
Q ss_pred CEeC--------CCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC
Q 010314 174 GAKS--------EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (513)
Q Consensus 174 G~~~--------~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~ 245 (513)
|.++ ....+.++|++|+..+++.+||+|++.+.........
T Consensus 81 g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~------------------------------- 129 (608)
T 3szr_A 81 PLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG------------------------------- 129 (608)
T ss_dssp CEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------------------------
T ss_pred CEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------------------------
Confidence 9763 1234578999999999999999999976532110000
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHHc--CCeEEEEEeCCh------HHH
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEP------LYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSS------TEV 311 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEP------TsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~------~~i 311 (513)
.++| ++++.++.+....|+++|+||| |+|||+..+..+.++++++..+ +.++++++|+.. ..+
T Consensus 130 ~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 130 MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 0111 1122222333458999999999 9999999999999999997543 455666665542 111
Q ss_pred H-hc----CCEEEEEeCCeEEEEeChHHH
Q 010314 312 F-GL----FDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 312 ~-~~----~D~v~vL~~G~iv~~G~~~~~ 335 (513)
. .+ ...|+|+.++.++..|+..++
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHH
Confidence 1 11 356888888888777765443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-17 Score=169.26 Aligned_cols=127 Identities=21% Similarity=0.274 Sum_probs=87.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-ceEEEEcCCcccCCCCCHHHHHHHHHHhc
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-GSYGFVERETTLIGSLTVREYLYYSALLQ 210 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~-~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (513)
...+|++++|+|||||||||||++|+|++++.. .|.|...+.+..... ...+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPIEFVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSCCSCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcHHhhhhccccceeeeeeccc---------------
Confidence 678899999999999999999999999987742 266654433322111 11223333211110
Q ss_pred CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 010314 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (513)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L 290 (513)
.++..+ +||++|..+|++|++|||| |..+ ++.+
T Consensus 182 ------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~----~~~~ 214 (356)
T 3jvv_A 182 ------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLET----IRLA 214 (356)
T ss_dssp ------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHH----HHHH
T ss_pred ------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHH----HHHH
Confidence 112222 8999999999999999999 6555 4444
Q ss_pred HHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 291 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 291 ~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
.+++..|.+||+|+|... .+ ..+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 455677999999888875 34 789999998654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.8e-18 Score=177.39 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=96.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.+.++||++.|. .+.++++++|.| +|+|+||||||||+++|+|...+... .|.+.+++.. ......+
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVY-----RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCTT-----TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeEC-----CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 578899988773 456999999998 99999999999999999999764321 1222222211 1112457
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
+|++|++.+++.+||.||+.+..... . .. ....+.+ +.+. .++.+++||++|||+++.
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~--~--~~---~~~~i~~------~i~~---------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD--N--SN---CWQPVID------YIDS---------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp ECC------CEEEEEEECC------------------CHHHHH------HHHH---------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc--c--hh---hHHHHHH------HHHH---------HHHHHHHHHHHHHHHhcc
Confidence 89999988888899999986643211 0 00 0111111 1122 456677889999999999
Q ss_pred CCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 265 RPH---VLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 265 ~P~---iLllDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
+|+ ||++|||| .+||+... ..++.+.. +.+||+++|+.
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred CCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 999 99999999 69998873 44455543 67777777774
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-18 Score=160.71 Aligned_cols=176 Identities=11% Similarity=0.014 Sum_probs=97.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGAKSEM 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~-----~~~~~~~G~I~i~G~~~~~ 179 (513)
.++++|+++.|. ..++++ +.+.+|..++|+|+||||||||++.|+|.. .++ .|.+.+.+.-...
T Consensus 3 ~l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~---~G~~~~~~~~~~~ 71 (210)
T 1pui_A 3 NLNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT---PGRTQLINLFEVA 71 (210)
T ss_dssp --------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEE
T ss_pred chhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCC---CccceeeEEEEec
Confidence 378999999884 247777 889999999999999999999999999987 443 3655432210000
Q ss_pred CCceEEEEcCCcccC----CCCC---HHHHHHHHHHh-cC----------CCchhhHHHHHHHHHHHcCChhH-Hhhhhc
Q 010314 180 PYGSYGFVERETTLI----GSLT---VREYLYYSALL-QL----------PGFFCQRKNVVEDAIHAMSLSDY-ANKLIG 240 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~----~~lT---V~E~l~~~~~~-~~----------~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg 240 (513)
..+.++ +.+.+. +.-. .+..+.+.... .. .......+..+.++++..++..+ ....+
T Consensus 72 --~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~- 147 (210)
T 1pui_A 72 --DGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA- 147 (210)
T ss_dssp --TTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG-
T ss_pred --CCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecc-
Confidence 001111 111110 0000 11112111110 00 00001122345556666666532 12222
Q ss_pred CCCCCCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 010314 241 GHCYMKGLPCGERRR-VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300 (513)
Q Consensus 241 ~~~~~~~LSGGqrqR-v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tv 300 (513)
..+|+||||| +.++++++.+|.++++|||||++|.....++++.|.++..+|.+.
T Consensus 148 -----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~~ 203 (210)
T 1pui_A 148 -----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPV 203 (210)
T ss_dssp -----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred -----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccch
Confidence 3789999999 899999999999999999999999999999999999987666543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.8e-19 Score=167.34 Aligned_cols=155 Identities=20% Similarity=0.209 Sum_probs=100.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (513)
|++++|+||||||||||+++|+|+++ +. | |.++|.... ...+.+||++|+. .... +++. .+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~---G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l~---~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SS---G-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPLS---RVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HT---T-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEEE---ECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cC---C-EEEcCEecchhHhhhceEEEEEEec--ccce---ehhh---cccc-
Confidence 78999999999999999999999987 54 8 888886532 2346789999874 1111 1110 0000
Q ss_pred CchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 010314 213 GFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRV-RIAR---ELVMRPHVLFIDE--PLYHLDSVSALL 285 (513)
Q Consensus 213 ~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv-~IAr---aL~~~P~iLllDE--PTsgLD~~~~~~ 285 (513)
+..+. .+..++ .+...+|+|||+++ ++++ |++.+|+|||+|| |+..+|...
T Consensus 67 -----------------~~~~~~~~~~v~--~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~--- 124 (189)
T 2i3b_A 67 -----------------EPPPGKRECRVG--QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF--- 124 (189)
T ss_dssp -----------------CCCSSSCCEESS--SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH---
T ss_pred -----------------cCCccccccccc--eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH---
Confidence 00000 001121 23457999999988 4454 6899999999999 898899865
Q ss_pred HHHHHHHHHHcCCeEEE---EE-eCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 286 MMVTLKKLASTGCTLLF---TI-NQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 286 i~~~L~~l~~~g~tvi~---t~-h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
++.|+++.+...++|+ ++ |+.. ..+.|+|..+.+|+++...
T Consensus 125 -~~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 125 -IQAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp -HHHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred -HHHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4455555444445553 33 4432 3567788888888887644
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=145.39 Aligned_cols=152 Identities=17% Similarity=0.112 Sum_probs=98.8
Q ss_pred eeeeeee-eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 124 KVVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 124 ~iL~~vs-~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
..|+.+. +-+++|++++|+||||||||||++.|++ ..+ .+.+++ ..+..+ +.. .
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~---~~v~~i---------------~~~~~~----~~~-~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG---KKVAYV---------------DTEGGF----SPE-R 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC---SEEEEE---------------ESSCCC----CHH-H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC---CcEEEE---------------ECCCCC----CHH-H
Confidence 4566666 4789999999999999999999999999 322 122332 222211 111 1
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCCh--hHHhhhhcCCCCCCCCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCC
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGE--RRRVRIARELVMR-PHVLFIDEPLYH 277 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~vg~~~~~~~LSGGq--rqRv~IAraL~~~-P~iLllDEPTsg 277 (513)
+.- .++.+++. +..+.. ++..+++++ +++++.+++++.+ |+++++||||++
T Consensus 62 ~~~-------------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LVQ-------------------MAETRGLNPEEALSRF-----ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHH-------------------HHHTTTCCHHHHHHHE-----EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHH-------------------HHHhcCCChHHHhhcE-----EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 110 11111111 111111 112455553 6788889999986 999999999999
Q ss_pred CCHH--------HHHHHHHHHHHHHHc-CCeEEEEEeCCh------------HHHHhcCCEEEEEeCC
Q 010314 278 LDSV--------SALLMMVTLKKLAST-GCTLLFTINQSS------------TEVFGLFDRICLLSNG 324 (513)
Q Consensus 278 LD~~--------~~~~i~~~L~~l~~~-g~tvi~t~h~~~------------~~i~~~~D~v~vL~~G 324 (513)
+|+. ....+++.|++++++ |.|||+++|... ..+...||.+++|+..
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9973 335567778888754 899998777643 1467899999999754
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=140.86 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=66.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEE
Q 010314 244 YMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (513)
.+..||||||||++||++|+. .|+++||||||+|||+.+...+.++|+++.+. .++|+++|+. .+...||+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEE
Confidence 456899999999999999975 46999999999999999999999999998754 5677767774 5678999998
Q ss_pred EE--eCCe
Q 010314 320 LL--SNGN 325 (513)
Q Consensus 320 vL--~~G~ 325 (513)
.+ .+|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 66 4564
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-19 Score=169.79 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=111.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (513)
|++++|+||||||||||+++|++ +. .|.+.++|.+.... ...++++|.....+..++.+++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ- 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcC-
Confidence 68999999999999999999998 22 38899988653211 124566665544445678888765432210000
Q ss_pred hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 010314 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL--PCGERRRVRIAR------ELVMRPHVLFIDEPLYHLDSVSALLMM 287 (513)
Q Consensus 216 ~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~L--SGGqrqRv~IAr------aL~~~P~iLllDEPTsgLD~~~~~~i~ 287 (513)
...+++.+........ + +.+ |+|++|++.++. +|+.+|+...+|+ +||+..... +
T Consensus 74 ------~~~ild~~~~~~~~~~-~------~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~ 136 (189)
T 2bdt_A 74 ------NDVVLDYIAFPDEAEA-L------AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-V 136 (189)
T ss_dssp ------CEEEEESCCCHHHHHH-H------HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-H
T ss_pred ------CcEEEeeccCHHHHHH-H------HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-H
Confidence 0001111111111111 1 134 889998998888 9999999888884 899988888 8
Q ss_pred HHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 288 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 288 ~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+.++.+.+.+.++|.++|...+++.++||+|+ ++|++++.|+++.+
T Consensus 137 ~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 137 EEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 88888765678888877762357889999998 99999999987653
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.7e-18 Score=156.72 Aligned_cols=148 Identities=14% Similarity=0.055 Sum_probs=94.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCceEEEEcCCcccCCCCCHHHHHHHHHHh
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (513)
+++|++++|+||||||||||+++|+|. ++ .|.|.++|.+.. .....++|++|+.. +..||.+++.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 568999999999999999999999998 33 399999986521 11123567777543 356888888664322
Q ss_pred cCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 010314 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289 (513)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~ 289 (513)
....... ..++.++..+++..+... ...+..+|+|++||+.++|++..+|+++ +|+.....+.+.
T Consensus 79 ~~~~~~~---~~~~~~~~~~~l~~~~~~----~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 79 YAKEGYF---VILDGVVRPDWLPAFTAL----ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHHTSCE---EEECSCCCTTTTHHHHTT----CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred HhccCCe---EEEeccCcHHHHHHHHhc----CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 1000000 001111122233333210 1123479999999999999999999876 688888888877
Q ss_pred HHHHHHcCCeEEE
Q 010314 290 LKKLASTGCTLLF 302 (513)
Q Consensus 290 L~~l~~~g~tvi~ 302 (513)
++.+...+..+|.
T Consensus 144 ~~~l~~~~~~~i~ 156 (191)
T 1zp6_A 144 FADLGAFEHHVLP 156 (191)
T ss_dssp TTCCGGGGGGEEE
T ss_pred HhccCcccccEEE
Confidence 7666433333444
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.6e-17 Score=155.00 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=97.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCceEEEEcCCcccCCCCCH----HHHHHHH
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTV----REYLYYS 206 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV----~E~l~~~ 206 (513)
..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+.+++... ....++|++|++..|+.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 45699999999999999999999999998863 256999998865432 23457899987665554443 2221110
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 010314 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286 (513)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i 286 (513)
+..| +.+ +++ +..++..++++||| ||+.++..+
T Consensus 91 ----------------------------------~~~y--g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i 123 (219)
T 1s96_A 91 ----------------------------------GNYY--GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQI 123 (219)
T ss_dssp ----------------------------------TEEE--EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHH
T ss_pred ----------------------------------hccC--CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHH
Confidence 0000 112 111 34455568999999 999999999
Q ss_pred HHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 287 MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 287 ~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
.+.+. ++.||++++|+. .++.. |+ +.+| .++++++...+
T Consensus 124 ~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 124 RQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 99876 588999988775 34443 42 6677 46676665544
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-18 Score=175.58 Aligned_cols=172 Identities=13% Similarity=0.060 Sum_probs=101.0
Q ss_pred eeeeeeeEEeC--CcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 125 VVKSSNGYALP--GTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 125 iL~~vs~~i~~--Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
+.+.|++.+.+ |+.++|+||||||||||+++|+|++++.. ...|+|.+++... ..+..+..... +
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-----------~~~~~~~~~~~-~ 224 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-----------GDEQAMQYSDY-P 224 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-----------SCTTSSCTTTH-H
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-----------CCcccCChhHH-H
Confidence 45679999999 99999999999999999999999998751 0015555432100 00001111122 3
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC---CC--
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-MRPHVLFIDE---PL-- 275 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~-~~P~iLllDE---PT-- 275 (513)
++.+.... . ......+.+-+..++ .+..++.+ ..+|+|++||..+++++. .+|+++|||| |+
T Consensus 225 ~I~~~~q~----~-~~~~~t~~~nl~~~~-~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~ 292 (365)
T 1lw7_A 225 QMALGHQR----Y-IDYAVRHSHKIAFID-TDFITTQA------FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD 292 (365)
T ss_dssp HHHHHHHH----H-HHHHHHHCSSEEEES-SCHHHHHH------HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC---
T ss_pred HHHHHHHH----H-HHHHHhccCCEEEEe-CCchHHHH------HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCccc
Confidence 33332100 0 000000000000001 11222222 256778888888888875 5999999999 65
Q ss_pred ----CCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 276 ----YHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 276 ----sgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.++|+..+..+.+.|+++.+ .+.+||+++|. . ...+++|++.+|+
T Consensus 293 ~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 293 DGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp --------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 58999999999999998864 48888887654 2 5666777665554
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-17 Score=162.79 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEeCCCC-CceEEEEcCCcccCCCCCHHHHHHHHHHh-
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALL- 209 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~---G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~- 209 (513)
++++++|+||||||||||+++|+ |+..++ .|+|.++|.+.... ...+.+++|+..+++..++.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999 998775 48888776432111 12234556777778888999999764321
Q ss_pred --------cCCCchhhHHHHHHHHHH--HcC------------ChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH-hhCC
Q 010314 210 --------QLPGFFCQRKNVVEDAIH--AMS------------LSDYANKLIGGHCYMKGLPCGERRRVRIAREL-VMRP 266 (513)
Q Consensus 210 --------~~~~~~~~~~~~v~~~l~--~~~------------L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL-~~~P 266 (513)
..+. ....++.+.. .++ +..+.++ .+..||| || ++| +.+|
T Consensus 103 ~~~~~il~g~~~----~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r------~~~~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 103 RGQHWLLDGFPR----TLGQAEALDKICEVDLVISLNIPFETLKDRLSRR------WIHPPSG----RV---YNLDFNPP 165 (246)
T ss_dssp TTSCEEEESCCC----SHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE------EEETTTT----EE---EETTTSCC
T ss_pred CCCeEEEECCCC----CHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcC------CCcCCCC----Cc---cccccCCC
Confidence 1111 1112222221 122 2223333 3458999 66 778 9999
Q ss_pred CEEEEe----CCCCCCCHHHHHHHHHHHHHHHHcC
Q 010314 267 HVLFID----EPLYHLDSVSALLMMVTLKKLASTG 297 (513)
Q Consensus 267 ~iLllD----EPTsgLD~~~~~~i~~~L~~l~~~g 297 (513)
++++|| |||++||..+...+.+.|+.+.+++
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999999 9999999999999999999987653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-15 Score=153.57 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=99.0
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--CCceEEEEc-CCcccCCCCCHH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM--PYGSYGFVE-RETTLIGSLTVR 200 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~--~~~~~~yv~-Q~~~l~~~lTV~ 200 (513)
+++++++.+++|++++|+||||||||||+++|+|+++++. |.|.++|... .. ....++|++ |+..+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~---g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ---RLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS---CEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc---eEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 3499999999999999999999999999999999999874 9999998531 11 234577777 54321
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010314 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (513)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~ 280 (513)
+++++..+|..|+.+|..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222356666777778899999999986
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 281 VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 281 ~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
.++.+.|+.+.....|++.++|..+ +...+||+..|..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777544457788888864 677899999887764
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-15 Score=161.52 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=104.4
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------CCceEEEEcCCcccC
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----------PYGSYGFVERETTLI 194 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----------~~~~~~yv~Q~~~l~ 194 (513)
.+++||.+.+|++++|+|+||||||||+++|+|++++.+ |+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~---G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG---KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcC---CeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 468999999999999999999999999999999988765 999998755321 123589999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh-hCCC-EEEEe
Q 010314 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-MRPH-VLFID 272 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~-~~P~-iLllD 272 (513)
+.+||++++.++...... . -+++..|+.+....+. .+| +|++.+++++. ..|. +||..
T Consensus 360 p~~tV~e~l~~a~~~~~D-v---------VLIDTaGrl~~~~~lm------~EL----~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNID-V---------LIADTAGRLQNKSHLM------EEL----KKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHHTTCS-E---------EEECCCCSCCCHHHHH------HHH----HHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCC-E---------EEEeCCCccchhhhHH------HHH----HHHHHHHHHhccCCCCeeEEEe
Confidence 889999999876431110 0 0123333322222211 133 47888888764 4574 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCC
Q 010314 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQS 307 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~ 307 (513)
.+|+|.|.. +.++.+.+ .+.|.|++||-+
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKLD 449 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKLD 449 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECGG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcCC
Confidence 588886554 33455553 477888877743
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-15 Score=156.71 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=92.7
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceEEEEcCCcccCCCCCHHHHH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
+|++++ +++|++++|+||||||||||+++|+|++++.. +|+|.+.|.+.... ...++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~--~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHS--CCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCC--CcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 78999999999999999999999999987741 39997766543321 23455666531
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
+|+. +..+ +.+|+++|..+|++|++|||+ |+.+.
T Consensus 191 -------------------------~g~~------------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~ 224 (372)
T 2ewv_A 191 -------------------------VGED------------TKSF------ADALRAALREDPDVIFVGEMR---DLETV 224 (372)
T ss_dssp -------------------------BTTT------------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred -------------------------cCCC------------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHH
Confidence 1211 1134 469999999999999999999 77664
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 284 ~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.. .++. +..|.+|++++|.. .+...+||++.|.
T Consensus 225 ~~---~l~~-~~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 225 ET---ALRA-AETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHH-HTTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred HH---HHHH-HhcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 43 3443 35688988877765 3677888887664
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-13 Score=130.32 Aligned_cols=152 Identities=18% Similarity=0.262 Sum_probs=86.6
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCC--CceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHH
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSA--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G--~~~~~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (513)
+-+++|++++|+||||||||||++.|++ ..++.. ...|.+++++.. .+ ...+.....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~~~~~~~ 79 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPERLLAVA 79 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHHHHHHHH
Confidence 5688999999999999999999999999 454410 012556665432 10 111111111
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH--
Q 010314 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR-VRIARELV--MRPHVLFIDEPLYHLDSV-- 281 (513)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR-v~IAraL~--~~P~iLllDEPTsgLD~~-- 281 (513)
..+... .++++ +.. .+....+..+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 80 ~~~g~~---------~~~~~---------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 80 ERYGLS---------GSDVL---------DNV----AYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp HHTTCC---------HHHHH---------HTE----EEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred HHcCCC---------HHHHh---------hCe----EEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 111110 00111 111 0122455555433 33334444 489999999999999975
Q ss_pred -----H-----HHHHHHHHHHHHHc-CCeEEEEEeCChHHH-------------------HhcCCEEEEEeCC
Q 010314 282 -----S-----ALLMMVTLKKLAST-GCTLLFTINQSSTEV-------------------FGLFDRICLLSNG 324 (513)
Q Consensus 282 -----~-----~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i-------------------~~~~D~v~vL~~G 324 (513)
. ...++..|++++++ |.|||+++|.. ... ..+||.+++|+.|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~-~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV-AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee-ecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 35566777777654 99999977643 222 2379999999865
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.2e-16 Score=162.62 Aligned_cols=184 Identities=14% Similarity=0.080 Sum_probs=114.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~--~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
.+++++ ++.|. ..+ |++||+.+++|++ ++|+||||||||||+|+|+|+.-. |.... ........+
T Consensus 16 ~l~~~~-~~~y~-----~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~-----g~~~~-~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFD-----SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE-----GEPAT-HTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEE
T ss_pred eEEEee-EEEEC-----Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc-----CCcCC-CCCccceEe
Confidence 445555 55552 234 9999999999999 999999999999999999998421 32111 101111124
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch--h----hHHHHHHHHHHHc-CChh----HHhhhhcC-----CCCCC
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFF--C----QRKNVVEDAIHAM-SLSD----YANKLIGG-----HCYMK 246 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~--~----~~~~~v~~~l~~~-~L~~----~~~~~vg~-----~~~~~ 246 (513)
.++|++|++.+++.+||.||+.++... .... . ......++.|... ++.. ..+..+.- .+..+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~--~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQI--NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-C--CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhcc--ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 689999999888889999988553211 1000 0 1123344555544 3321 11111000 01124
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCeEEEEEeC
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTINQ 306 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~t~h~ 306 (513)
+|+-.+ +.|+++|..++.||++|||+..|.+.....+.+.+++ |...|..|+.++.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 677666 7999999999999999999999999999999999986 77778888876543
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-15 Score=150.49 Aligned_cols=160 Identities=11% Similarity=0.045 Sum_probs=107.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------C--ceEEEEcCCcccCCCCCHHHH
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------Y--GSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~--~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
++|++++|+||||||||||+++|+|++++.+ |+|.+.|.+.... . ..+.|++|...++|.++|+||
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~---g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG---FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC---CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 5899999999999999999999999998875 9999999875321 1 235699999999999999999
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~ 282 (513)
+.++....... -+++..|+.+.....+ .+|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d~----------vliDtaG~~~~~~~l~------~eL~-------~i~ral~~de~llvLDa~t~------ 254 (328)
T 3e70_C 204 IQHAKARGIDV----------VLIDTAGRSETNRNLM------DEMK-------KIARVTKPNLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHHTCSE----------EEEEECCSCCTTTCHH------HHHH-------HHHHHHCCSEEEEEEEGGGT------
T ss_pred HHHHHhccchh----------hHHhhccchhHHHHHH------HHHH-------HHHHHhcCCCCEEEEecHHH------
Confidence 97753211100 0122233332222222 2444 38899998888888885554
Q ss_pred HHHHHHHHHHHHH-cCCeEEEEEeCChH--------HHHhcCCEEEEEeCCeE
Q 010314 283 ALLMMVTLKKLAS-TGCTLLFTINQSST--------EVFGLFDRICLLSNGNT 326 (513)
Q Consensus 283 ~~~i~~~L~~l~~-~g~tvi~t~h~~~~--------~i~~~~D~v~vL~~G~i 326 (513)
..+++.++.+.+ .+.|+|++||.+.. .+....-.|..+..|+-
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 355666677764 48888888886521 12233445666665543
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-17 Score=166.66 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCEeCCCCC--------------------ceEEEE-
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL--------PHSARMYGEVFVNGAKSEMPY--------------------GSYGFV- 187 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~--------~~~~~~~G~I~i~G~~~~~~~--------------------~~~~yv- 187 (513)
++++|+|+||||||||+|+|+|.. .++ .|+|.++|....... +.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 589999999999999999999986 444 499999987643210 123444
Q ss_pred --cCCcccCCCCCHHHHHHHHH--Hh--cC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 188 --ERETTLIGSLTVREYLYYSA--LL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 188 --~Q~~~l~~~lTV~E~l~~~~--~~--~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
+|+..+++..+|.|++.++. .+ .. ..........+..++..+++.++.++.. ++|+||+||+..++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-------~ls~g~~Q~~~ad~ 154 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-------QFTIAQSQVGYADR 154 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-------HCHHHHHHHHTCSE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-------hchHHHHHHHhCCE
Confidence 45444444555555543210 00 00 0000000001122334455555555543 68999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCC
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (513)
+++.+|+++ ||| ..+.+.|+++. .+.+|++++|.+. ++..++|
T Consensus 155 ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 155 ILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred EEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 999999987 998 77888888875 5889999888764 3444444
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-15 Score=139.13 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=77.4
Q ss_pred eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHh
Q 010314 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (513)
Q Consensus 130 s~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (513)
++.+.+|+.++|.||||+|||||+++|++.+.+.. |.. +.| +++.+.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~---g~~-------------~~~----------~~~~~~~~~---- 81 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK---GIR-------------GYF----------FDTKDLIFR---- 81 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS---CCC-------------CCE----------EEHHHHHHH----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc---CCe-------------EEE----------EEHHHHHHH----
Confidence 34556899999999999999999999999875431 310 111 233333211
Q ss_pred cCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 010314 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMV 288 (513)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs-gLD~~~~~~i~~ 288 (513)
+......- ... -....+.+|++||||||++ ++|+..+..+.+
T Consensus 82 ------------~~~~~~~~-----------------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ 124 (180)
T 3ec2_A 82 ------------LKHLMDEG-----------------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISY 124 (180)
T ss_dssp ------------HHHHHHHT-----------------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred ------------HHHHhcCc-----------------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence 00000000 000 1123345999999999996 999999999999
Q ss_pred HHHHHHHcCCeEEEEEeCChHH
Q 010314 289 TLKKLASTGCTLLFTINQSSTE 310 (513)
Q Consensus 289 ~L~~l~~~g~tvi~t~h~~~~~ 310 (513)
++....++|+++|+++|++..+
T Consensus 125 ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 125 IITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHHHTTCEEEEECCCCSCC
T ss_pred HHHHHHHcCCCEEEEcCCChhH
Confidence 9999887899999999987543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-14 Score=147.65 Aligned_cols=138 Identities=19% Similarity=0.124 Sum_probs=93.1
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEeCC-CCCceEEEEcCCcccCCCCCHHH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVN-GAKSE-MPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~-~~~~~~G~I~i~-G~~~~-~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
-++++++. .+|++++|+||||||||||+|+|+|+.+ +.. |+|.++ |.... .....+++++|+..+++..+|+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~---G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILT---NDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCC---C-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccccc---CCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 35566654 4899999999999999999999999988 764 999987 65432 23456899999998988888988
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~ 281 (513)
+. +. .....+....+.++++.+++.++.+.. +.+|| ||+||++||+++ +++.
T Consensus 281 ~~-----l~-~l~~~e~~~~~~e~l~~~gl~~f~~~~------~~~lS-G~~~r~ala~gl---------------i~~~ 332 (358)
T 2rcn_A 281 FG-----LW-HLEPEQITQGFVEFHDYLGHCKYRDCK------HDADP-GCAIREAVENGA---------------IAET 332 (358)
T ss_dssp CC-----CC-CCCHHHHHHTSGGGGGGTTCSSSTTCC------SSSCT-TCHHHHHHHHTS---------------SCHH
T ss_pred hh-----hc-CCCHHHHHHHHHHHHHHcCCchhcCCC------cccCC-HHHHHHHHHhcC---------------CCHH
Confidence 42 11 111123345577888888988776654 45999 999999999864 3444
Q ss_pred HHHHHHHHHHHHH
Q 010314 282 SALLMMVTLKKLA 294 (513)
Q Consensus 282 ~~~~i~~~L~~l~ 294 (513)
-.....++++++.
T Consensus 333 R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 333 RFENYHRILESMA 345 (358)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 4444555666654
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.2e-15 Score=135.68 Aligned_cols=78 Identities=19% Similarity=0.092 Sum_probs=64.1
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
+.+++++||.+++|++++|+||||||||||+|+|+|++ |.. |+|.++|.+.........+++|+..++ .+||.|+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~---G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ---GNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC---SCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTH
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC---CeEEECCEeeeeeccCCCcceeccccc-cCCcHHH
Confidence 46899999999999999999999999999999999999 654 999999865421111112789988888 8999999
Q ss_pred HHH
Q 010314 203 LYY 205 (513)
Q Consensus 203 l~~ 205 (513)
+.+
T Consensus 95 l~~ 97 (158)
T 1htw_A 95 LEF 97 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-15 Score=156.72 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=95.6
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCC----------cccCC
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERE----------TTLIG 195 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~----------~~l~~ 195 (513)
-+++++.++.|+.++|+|+|||||||||++|+|..+. +.+.+.......++++.++ +.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~---------i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPK---------IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCE---------ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCcc---------ccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 4789999999999999999999999999999998431 1121111111223333332 22221
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPT 275 (513)
.. .++. .+........++++.++..+++. +. .+..||+|++|++.+|++|+..|.||++
T Consensus 218 ~a--~~~~------~L~~~fl~~~era~~lL~vvDls---~~------~~~~ls~g~~el~~la~aL~~~P~ILVl---- 276 (416)
T 1udx_A 218 GA--SEGK------GLGLEFLRHIARTRVLLYVLDAA---DE------PLKTLETLRKEVGAYDPALLRRPSLVAL---- 276 (416)
T ss_dssp CG--GGSC------CSCHHHHHHHTSSSEEEEEEETT---SC------HHHHHHHHHHHHHHHCHHHHHSCEEEEE----
T ss_pred ch--hhhh------hhhHHHHHHHHHHHhhhEEeCCc---cC------CHHHHHHHHHHHHHHhHHhhcCCEEEEE----
Confidence 10 0000 00000000001112223333332 22 2347999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH-HHcCCeEEEEEeCChHHHHhcCCE
Q 010314 276 YHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 276 sgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
+.+|...+ ..++.+++. .+.+.++++++.+....+.++++.
T Consensus 277 NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 277 NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 99999877 455555544 445778777665544445555543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.6e-13 Score=137.76 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCE
Q 010314 245 MKGLPCGERRRV------RIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 245 ~~~LSGGqrqRv------~IAraL~~~-P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
+..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+++|++ ++..+||+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~--~~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHR--ELEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCG--GGGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChH--HHHhhCCE
Confidence 468999999988 567899999 99999999999999999999999999874 346888888886 36789999
Q ss_pred EEEEe-CCe
Q 010314 318 ICLLS-NGN 325 (513)
Q Consensus 318 v~vL~-~G~ 325 (513)
+++|+ +|.
T Consensus 355 ~~~l~k~~~ 363 (371)
T 3auy_A 355 IINVKKDGN 363 (371)
T ss_dssp EEEEEESSS
T ss_pred EEEEEecCC
Confidence 99997 443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.8e-13 Score=139.82 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 246 KGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
..||||||||++||++|+ .+|+++||||||++||+..+..+++.|+++...+.++|+++|++ .....||+++.|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 57999999999999999999999999999875578899988874 567889999999
Q ss_pred e
Q 010314 322 S 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.5e-14 Score=141.49 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=82.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCCC-----ceEEEEcCCcccC-----CCCCH
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMPY-----GSYGFVERETTLI-----GSLTV 199 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i---~G~~~~~~~-----~~~~yv~Q~~~l~-----~~lTV 199 (513)
+.+|++++|+||||||||||+|+|+ +.++.. |+|.+ +|+...... ..+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~---G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRT---QEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCC---SCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcc---cccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3479999999999999999999999 888864 99999 887643221 2479999998653 68899
Q ss_pred HHHH--HHH------HHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 200 REYL--YYS------ALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 200 ~E~l--~~~------~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
|++ .|+ +.++......+...++.++++.++|.+ ..++.+ +.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~------~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL------KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH------HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH------HHHHHHHHHHHHHhcc
Confidence 887 443 112210111233457899999999986 666654 4899999999999873
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-15 Score=139.23 Aligned_cols=138 Identities=16% Similarity=0.136 Sum_probs=84.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C-------CC-ceEE----EEcCCcccCCCCCHHHHH
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-M-------PY-GSYG----FVERETTLIGSLTVREYL 203 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-~-------~~-~~~~----yv~Q~~~l~~~lTV~E~l 203 (513)
++++|+|+||||||||+++|+|++++.+...|.|.++|.+.. . .+ +.++ ++.|+..+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998876333599999997621 1 11 2355 788877655 100
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHH-cCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCCC
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHA-MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL-------FIDEPL 275 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~-~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iL-------llDEPT 275 (513)
.. .+....+.+.++. +. . .|+.++ .+||||||||++||||++.+|++. .-|.|.
T Consensus 77 --------~~--~~~~a~l~~~i~~~l~--g-~dt~i~-----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~ 138 (171)
T 2f1r_A 77 --------VS--EEEGNDLDWIYERYLS--D-YDLVIT-----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERV 138 (171)
T ss_dssp --------CC--HHHHTCHHHHHHHHTT--T-CSEEEE-----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCC
T ss_pred --------CC--hhhhhCHHHHHHhhCC--C-CCEEEE-----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCc
Confidence 00 0000123344443 32 1 344443 259999999999999999999873 235553
Q ss_pred CC---CCHHHHHHHHHHHHHHHHcCC
Q 010314 276 YH---LDSVSALLMMVTLKKLASTGC 298 (513)
Q Consensus 276 sg---LD~~~~~~i~~~L~~l~~~g~ 298 (513)
.+ +|......+.+.|.+...+|.
T Consensus 139 ~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 139 DGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred ccCcccCcccHHHHHHHHHHHHhccC
Confidence 22 344456777788766665654
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-13 Score=121.40 Aligned_cols=94 Identities=19% Similarity=0.366 Sum_probs=70.1
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G--~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
+|+++ +|+.++|+||||+|||||+++|+|...+. | .+++++. +... .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----g~~~~~~~~~---------------~~~~-~------ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA----GKNAAYIDAA---------------SMPL-T------ 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT----TCCEEEEETT---------------TSCC-C------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEcHH---------------HhhH-H------
Confidence 45555 89999999999999999999999987653 4 3333332 1100 0
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~ 282 (513)
+++.+|+|||+|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66555
Q ss_pred HHHHHHHHHHHHHcCCe-EEEEEeCCh
Q 010314 283 ALLMMVTLKKLASTGCT-LLFTINQSS 308 (513)
Q Consensus 283 ~~~i~~~L~~l~~~g~t-vi~t~h~~~ 308 (513)
+..+++++..+.+.|++ +|+++|.+.
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 88999999998887887 888777554
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.1e-15 Score=153.55 Aligned_cols=175 Identities=12% Similarity=0.041 Sum_probs=112.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++++++.|. .+.+|+++++.+.+|++++|+|+||||||||+++|+|++++.+ |+|.+.|.+...
T Consensus 30 ie~~~~~~~~~-----~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~---g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRAA-----VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG---HKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHHH-----HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECGGGGSSCCC
T ss_pred HeeCCcccccC-----hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCC---CEEEEEEEcCcccccccc
Confidence 55666666552 3468999999999999999999999999999999999988765 999998876421
Q ss_pred ---CCceEEEEcCCcccCCCC------------CHHHHHHHHHHhcC-------CCch---------------------h
Q 010314 180 ---PYGSYGFVERETTLIGSL------------TVREYLYYSALLQL-------PGFF---------------------C 216 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~l------------TV~E~l~~~~~~~~-------~~~~---------------------~ 216 (513)
....++|++|++.+++.. ++.|.+........ +... .
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~ 181 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAG 181 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCc
Confidence 234578999988777532 12333211000000 0000 0
Q ss_pred hHHHHHH-HHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHH
Q 010314 217 QRKNVVE-DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM------RPHVLFIDEPLYHLDSVSALLMMVT 289 (513)
Q Consensus 217 ~~~~~v~-~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~------~P~iLllDEPTsgLD~~~~~~i~~~ 289 (513)
...+.+. .+++...+- ..++. +......+|+|++|++.+|++++. +|++++ ||++|......+++.
T Consensus 182 ~~~~~i~~~i~~~~~iv-vlNK~--Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~ 254 (337)
T 2qm8_A 182 DELQGIKKGIFELADMI-AVNKA--DDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSR 254 (337)
T ss_dssp -----CCTTHHHHCSEE-EEECC--STTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHH
T ss_pred ccHHHHHHHHhccccEE-EEEch--hccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHH
Confidence 0000000 011111110 01110 001124689999999999999987 688887 999999999999999
Q ss_pred HHHHHH
Q 010314 290 LKKLAS 295 (513)
Q Consensus 290 L~~l~~ 295 (513)
|.++..
T Consensus 255 I~~~~~ 260 (337)
T 2qm8_A 255 IEDHRS 260 (337)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-14 Score=143.01 Aligned_cols=131 Identities=16% Similarity=0.162 Sum_probs=86.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHH----hc
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL----LQ 210 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~----~~ 210 (513)
++.+++|.|+||||||||++.|++++.+. | . ..+.+.+|.|++.+++. ++++|+.+... +.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C----CCceEEEeccccccCCh-HHHHHHhccccccchhh
Confidence 68899999999999999999999998652 2 0 02335566999988865 88888876521 11
Q ss_pred ---CCCchhhHHHHHHHHHHHcCCh--hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010314 211 ---LPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (513)
Q Consensus 211 ---~~~~~~~~~~~v~~~l~~~~L~--~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~ 282 (513)
.|.. .....+.+.++.+... ......+.-..+.+.+||||+||+++|++...+|+|||+|||+++||+..
T Consensus 95 ~~g~p~a--~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 95 GRGLPGT--HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSTTS--BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hccCcch--hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 1221 1233455566655332 00000000022557899999999999833333999999999999999853
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.9e-12 Score=131.37 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=92.9
Q ss_pred eeeee-eeEEeCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCC--CceeEEEECCEeCCCCCceEEEEcCCcccCCCCCH
Q 010314 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSA--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 125 iL~~v-s~~i~~Ge~~aliGpsGsGKSTLl~~--L~G~~~~~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (513)
-|+.+ .+-+++|++++|+||||||||||++. +.+..+++. .-.+.|++++.. .+ ..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~----~~ 226 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF----RP 226 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc----CH
Confidence 34443 36789999999999999999999994 456666521 012355555432 11 11
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh--hHHhhhhcCCCCCCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCC
Q 010314 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPC-GERRRVRIARELV--MRPHVLFIDEP 274 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~vg~~~~~~~LSG-GqrqRv~IAraL~--~~P~iLllDEP 274 (513)
. ++.+..+.+++. .+.+... +....++ .+.+.+..+.+++ .+|+++++|||
T Consensus 227 ~--------------------rl~~~a~~~gl~~~~vleni~----~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 227 V--------------------RLVSIAQRFGLDPDDALNNVA----YARAYNADHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp H--------------------HHHHHHHHTTCCHHHHHHTEE----EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred H--------------------HHHHHHHHcCCChHhHhhcEE----EeccCChHHHHHHHHHHHHHHHhcCCceEEecch
Confidence 1 111122223332 1111110 1112222 2333444444443 46999999999
Q ss_pred CCCCCHHHH------------HHHHHHHHHHHHc-CCeEEEEEeCCh------------------HHHHhcCCEEEEEeC
Q 010314 275 LYHLDSVSA------------LLMMVTLKKLAST-GCTLLFTINQSS------------------TEVFGLFDRICLLSN 323 (513)
Q Consensus 275 TsgLD~~~~------------~~i~~~L~~l~~~-g~tvi~t~h~~~------------------~~i~~~~D~v~vL~~ 323 (513)
++.+|+... .++++.|++++++ |.|||+++|... ..+.+.+|.+++|++
T Consensus 283 t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 283 MALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp GGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEE
T ss_pred hhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 999996543 6788889998765 999999888711 234677999999987
Q ss_pred Ce
Q 010314 324 GN 325 (513)
Q Consensus 324 G~ 325 (513)
++
T Consensus 363 ~~ 364 (400)
T 3lda_A 363 GK 364 (400)
T ss_dssp CS
T ss_pred cC
Confidence 64
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-14 Score=151.46 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=90.6
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEEc------
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVE------ 188 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~------ 188 (513)
.+|+++ + ..+|++++|+|||||||||||++|+|++++.. |+|.+.|.+.... ...+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~---g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSE---RNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTT---SCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 367776 4 37899999999999999999999999988764 9999988664321 12234444
Q ss_pred ---CCccc--CCC----CCHHHHHHHHHHhcC--CC-chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 189 ---RETTL--IGS----LTVREYLYYSALLQL--PG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 189 ---Q~~~l--~~~----lTV~E~l~~~~~~~~--~~-~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
|++.+ ++. .|+.+++.++..-.. .. ....... +.+.|..+++.+.. .. ..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~------~~LSgg~~QR- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--IS------SSLLGVLAQR- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HH------HHEEEEEEEE-
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HH------HHHHHHHHHH-
Confidence 77654 343 588888876532110 00 0011222 33357778887654 33 3899999999
Q ss_pred HHHHHHhhCCCEEEE
Q 010314 257 RIARELVMRPHVLFI 271 (513)
Q Consensus 257 ~IAraL~~~P~iLll 271 (513)
|||+|+.+|+++.-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-15 Score=163.44 Aligned_cols=177 Identities=14% Similarity=0.051 Sum_probs=106.0
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-CCCC-CceEEEEcCCcc--------
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP-YGSYGFVERETT-------- 192 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-~~~~-~~~~~yv~Q~~~-------- 192 (513)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+. |.|.+.|.. .... ...+.++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~---giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA---KVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC---CEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC---CEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 457899999999999999999999999999999999998874 999998854 2211 223455544322
Q ss_pred --------------cCCCCCHHHHHHHHHHhcCCCch--hhHHHHHHHHHHHcCC-----hhH-HhhhhcCCCCCCCCCH
Q 010314 193 --------------LIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSL-----SDY-ANKLIGGHCYMKGLPC 250 (513)
Q Consensus 193 --------------l~~~lTV~E~l~~~~~~~~~~~~--~~~~~~v~~~l~~~~L-----~~~-~~~~vg~~~~~~~LSG 250 (513)
++..++..|++.+...+...... ......+.++++++.. ... ....-.-......+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 22345555554332222111000 0000112333333322 211 1110000012235799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE--EEeCChHHHHhcC
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF--TINQSSTEVFGLF 315 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~--t~h~~~~~i~~~~ 315 (513)
||+||+++|. + | |+|||+.....+++.|.++...+.|+++ ++|.. .++...|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHc
Confidence 9999987751 2 7 9999998877777777777666778774 55553 5666555
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-12 Score=130.76 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=73.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCC---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc
Q 010314 139 TVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G-~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (513)
+.|.||||+|||||+++|+| +..+.. |.|.++|..... ....+++++|.+.+.-..+- ... .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~---g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~- 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGV---YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD---------MGN-N- 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTC---CC------------------CCEECSSEEEECCC--------------C-
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCC---CeEEecceeecccccccceeeeecccceEEecHhh---------cCC-c-
Confidence 89999999999999999999 677664 999998865321 12456777776543211110 000 0
Q ss_pred hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 010314 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294 (513)
Q Consensus 215 ~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~ 294 (513)
. ...+.+.++.+....-.+. .. .||| +..+|+|+|+|||++ ||+.++..+++.|.+..
T Consensus 105 --~-~~~~~~~i~~~~~~~~~~~------~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 --D-RIVIQELLKEVAQMEQVDF------QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp --C-HHHHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred --c-hHHHHHHHHHHHHhccccc------cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 0 0123333333211100011 00 3566 788999999999999 99999999999998864
Q ss_pred HcCCeEEEEEeCCh
Q 010314 295 STGCTLLFTINQSS 308 (513)
Q Consensus 295 ~~g~tvi~t~h~~~ 308 (513)
.+.++|+++|++.
T Consensus 163 -~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 163 -KNIRLIMVCDSMS 175 (354)
T ss_dssp -TTEEEEEEESCSC
T ss_pred -CCCEEEEEeCCHH
Confidence 4678888888864
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.9e-15 Score=139.33 Aligned_cols=121 Identities=17% Similarity=0.115 Sum_probs=67.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (513)
.++|++++|+||||||||||+++|+|++++. | ..++++.+++..+.. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 4589999999999999999999999998753 2 124555555444321 122221000000011
Q ss_pred CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCC
Q 010314 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA-RELVMRPHVLFIDEPL 275 (513)
Q Consensus 213 ~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA-raL~~~P~iLllDEPT 275 (513)
.. .....+.+.+..+...+..+... ......+|+||+||+++| ++++.++.++++|||.
T Consensus 81 ~~--~~~~~~~~~l~~l~~~~~i~~p~--~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 81 ET--FDFEGFQRLCHALKHQERVIYPL--FDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp GG--BCHHHHHHHHHHHHHCSCEEEEE--EETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred ch--hhHHHHHHHHHHHhcCCceeccc--CCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 10 11122223333221111011111 112236799999999998 8888888888888874
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.9e-13 Score=133.41 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=71.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----CceEEEEcCCcc-----------
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMP-----YGSYGFVERETT----------- 192 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i---~G~~~~~~-----~~~~~yv~Q~~~----------- 192 (513)
.+.+|++++|+||||||||||+|+|+|+.+|.. |+|.+ +|+..... .+.++|++|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~---G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRV---SEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccc---cceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 345799999999999999999999999999874 99999 88764321 124789999874
Q ss_pred -----cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCH
Q 010314 193 -----LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 193 -----l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSG 250 (513)
+||.+|+ ||+.|.. ... . .+...++.++|+.++|. +..++++ +.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~~-~--~e~~~~v~~~l~~~~L~~~~~~~~~------~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CNH-V--DEPECGVKEAVENGEIAESRYENYV------KMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CCS-S--SCSSCHHHHHHHHTSSCHHHHHHHH------HHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-CcC-C--CCCCcHHHHHHHcCCCCHHHHHHHH------HHHHH
Confidence 6889999 9987642 111 1 23345689999999995 6777654 47774
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-14 Score=145.09 Aligned_cols=139 Identities=16% Similarity=0.129 Sum_probs=93.1
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CceEEEEcCCc-ccCCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERET-TLIGS 196 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~-~l~~~ 196 (513)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 35889999999999 999999999999999999998765 8899998654221 12355666653 34455
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
+++.|++.... +.. . .... -.+....++++. .|||||+||+.|++|+..+|++| ||++.
T Consensus 106 i~~~Deid~~~----~~r--~-~~~~------~~~~~~~~~~l~------~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 106 VIFFDEVDALC----PRR--S-DRET------GASVRVVNQLLT------EMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEEETCTTTC----C------------------CTTHHHHHHH------HHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eEeeehhhhhh----ccc--C-CCcc------hHHHHHHHHHHH------hhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 55555553211 000 0 0000 013344555554 89999999999999999999986 88864
Q ss_pred ------------CCCHHHHHHHHHH
Q 010314 277 ------------HLDSVSALLMMVT 289 (513)
Q Consensus 277 ------------gLD~~~~~~i~~~ 289 (513)
-.|...+.+|++.
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHH
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHH
Confidence 2355666665554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.16 E-value=5e-12 Score=127.79 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=68.2
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCCC---ce-EEEEcCCcccCC----CCCH
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMPY---GS-YGFVERETTLIG----SLTV 199 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i---~G~~~~~~~---~~-~~yv~Q~~~l~~----~lTV 199 (513)
+.+.+|++++|+||||+|||||+|+|+|+.++.. |+|.+ +|+...... +. .+|++|++.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRT---NEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccc---cceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 5667999999999999999999999999988764 99998 776543211 11 699999987765 6899
Q ss_pred HHHH--HHHHH--h----cCCC--chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 200 REYL--YYSAL--L----QLPG--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 200 ~E~l--~~~~~--~----~~~~--~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
|++ .|+.. + +... ...+....+.++++.++|.+.+..... .|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~------~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYV------EFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH------HHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHH------HHHHHHhhc
Confidence 888 34311 1 1111 112334568999999999875443322 677787763
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.12 E-value=4.3e-14 Score=147.53 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=115.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC------C---CCCceeEEEECCEeC------CCCCce---EEEEcCCccc
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLP------H---SARMYGEVFVNGAKS------EMPYGS---YGFVERETTL 193 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~------~---~~~~~G~I~i~G~~~------~~~~~~---~~yv~Q~~~l 193 (513)
.+++|..++|+|+||+|||||+|+|+|... | -....|.|.++|... ..+.+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 456899999999999999999999999321 0 012369999988431 011222 3467788888
Q ss_pred CCCCCHHHHH--HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC--CEE
Q 010314 194 IGSLTVREYL--YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP--HVL 269 (513)
Q Consensus 194 ~~~lTV~E~l--~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P--~iL 269 (513)
.+..+..|++ .|...++... .++..++..+ +. .+..++|+. +| +++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d----------~il~Vvd~~~--d~------~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVD----------AIYQVVRAFD--DA------EIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCS----------EEEEEEECCC--TT------CSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH----------HHHHHHhccc--cc------eeeeecccc------------Ccchhhh
Confidence 8887776655 3322222110 0111111111 11 222456643 89 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH-HHcCCeEEEEEeCChHHHHhcCCEEE-EEeCC-eEEEEeChH
Q 010314 270 FIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRIC-LLSNG-NTLFFGETL 333 (513)
Q Consensus 270 llDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~~~i~~~~D~v~-vL~~G-~iv~~G~~~ 333 (513)
++|||+.++|+......++.++.+ ...|.|++ +|.. ..+.++||++. +|.+| ++++.|+..
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999999999999999998 66677754 5654 68899999999 99999 888777653
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-13 Score=139.20 Aligned_cols=164 Identities=21% Similarity=0.161 Sum_probs=102.4
Q ss_pred ceeeeeeeeEEeCC-------cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeC-----CCCCceEEEEcC
Q 010314 123 DKVVKSSNGYALPG-------TMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKS-----EMPYGSYGFVER 189 (513)
Q Consensus 123 ~~iL~~vs~~i~~G-------e~~aliGpsGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~-----~~~~~~~~yv~Q 189 (513)
..+++++++.+++| +.++|.||||+|||||+++|+|.+... ...+|.+..++.+. ......+.|++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 45788888888876 889999999999999999999986221 01246665554332 112346899999
Q ss_pred CcccCCCCCHHHHHHHHHHhcCCC---chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 010314 190 ETTLIGSLTVREYLYYSALLQLPG---FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (513)
Q Consensus 190 ~~~l~~~lTV~E~l~~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P 266 (513)
.+.+.+ ++.|++.......... ......+.+...+..++|.. +.+. +..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~------~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR------SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC------GGGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC------cccCCHHHHHhcCce-------
Confidence 888765 7888885433221100 00111233444455555544 3333 348999999998665
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCE
Q 010314 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 267 ~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~ 317 (513)
.+||+.+..++.+.|++.++. +. .|. .+.+..++++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~~~~-----~~~-~~~~~~ia~~ 211 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASLMDV-----EIE-DAAAEMIAKR 211 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHHTTC-----CBC-HHHHHHHHHT
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHHcCC-----CcC-HHHHHHHHHh
Confidence 788999999999999988753 42 233 3445555553
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-14 Score=135.01 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 258 IAR-ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 258 IAr-aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
+|+ +++.+|++++|||+|+++|..+...|.+.|..+.++ +...|. . ..||+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~--~---~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKE--P---GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS--T---TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc--c---CCceEEEECCC
Confidence 455 678888888899999999999999999998887643 111341 1 56999988763
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-10 Score=120.71 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=109.4
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G-~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
...|+++.+-+.+|+++.|.|++|+|||||+..|++...+.. | .|.+ +.-+ ++..+
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~--------------~s~E------~s~~~ 246 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAI--------------FSLE------MSAQQ 246 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEE--------------EESS------SCHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEE--------------EECC------CCHHH
Confidence 357888888899999999999999999999999998654321 3 3333 2211 22222
Q ss_pred HHHH--HHHhcCC-------CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh--hCCCEEE
Q 010314 202 YLYY--SALLQLP-------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV--MRPHVLF 270 (513)
Q Consensus 202 ~l~~--~~~~~~~-------~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~--~~P~iLl 270 (513)
...- +.....+ ....+...++.++++.++..++.-. ...++|.+|.+ +.++.++ .+|++++
T Consensus 247 l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~------d~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 247 LVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYID------DTPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEE------CCTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEE------CCCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 2111 1011111 0001122334455554433222111 12378999987 5677776 6899999
Q ss_pred EeCCCCCCC--------HHHHHHHHHHHHHHHHc-CCeEEEEEeC-----------Ch-------HHHHhcCCEEEEEeC
Q 010314 271 IDEPLYHLD--------SVSALLMMVTLKKLAST-GCTLLFTINQ-----------SS-------TEVFGLFDRICLLSN 323 (513)
Q Consensus 271 lDEPTsgLD--------~~~~~~i~~~L~~l~~~-g~tvi~t~h~-----------~~-------~~i~~~~D~v~vL~~ 323 (513)
+|+++...+ ......+.+.|+.++++ +.+||+++|- |. ..+...||.|++|+.
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 999999774 33447788888988854 8999997771 21 146778999999987
Q ss_pred CeE
Q 010314 324 GNT 326 (513)
Q Consensus 324 G~i 326 (513)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 764
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.3e-11 Score=119.81 Aligned_cols=113 Identities=17% Similarity=0.125 Sum_probs=79.4
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHH
Q 010314 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL 208 (513)
Q Consensus 129 vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 208 (513)
+++...+|++++|+|+|||||||++..|++.+.+.+ |+|.+.+.+.... ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D~~r~-----------------~a~e------- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAADTFRA-----------------AAIE------- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECTTCH-----------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccccccH-----------------HHHH-------
Confidence 445566899999999999999999999999987654 7787765432100 0011
Q ss_pred hcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010314 209 LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV---RIARELVMRPHVLFIDEPLYHLDSVSALL 285 (513)
Q Consensus 209 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv---~IAraL~~~P~iLllDEPTsgLD~~~~~~ 285 (513)
.+..+++.+++.. ...+|||+.+++ +|++++..+|+++|+|||.. ......
T Consensus 150 ------------qL~~~~~~~gl~~-----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~ 203 (306)
T 1vma_A 150 ------------QLKIWGERVGATV-----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKN 203 (306)
T ss_dssp ------------HHHHHHHHHTCEE-----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHH
T ss_pred ------------HHHHHHHHcCCcE-----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHH
Confidence 1223344445431 225789999999 99999999999999999974 344556
Q ss_pred HHHHHHHHH
Q 010314 286 MMVTLKKLA 294 (513)
Q Consensus 286 i~~~L~~l~ 294 (513)
+++.|+.+.
T Consensus 204 l~~eL~~l~ 212 (306)
T 1vma_A 204 LMEELRKVH 212 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.3e-10 Score=106.67 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=44.7
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHH-------HHhcCCEEEEEeC
Q 010314 264 MRPHVLFIDEPLYHL--DSVSALLMMVTLKKLA-STGCTLLFTINQSSTE-------VFGLFDRICLLSN 323 (513)
Q Consensus 264 ~~P~iLllDEPTsgL--D~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~-------i~~~~D~v~vL~~ 323 (513)
.+|+++++|+|++.+ |+....+++..|.+++ +.|.|||+++|..... +.+.||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666665 5689999988876431 4678999999964
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8e-10 Score=111.10 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=82.0
Q ss_pred eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHH
Q 010314 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (513)
Q Consensus 127 ~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (513)
+++++. +|++++|+|+||+||||++..|+|.+.+.+ |+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~~d~~~~----------------~~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADTQRP----------------AAR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEECCSSCH----------------HHH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcccH----------------hHH-HHH---
Confidence 678887 999999999999999999999999987654 7888766542110 000 101
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHH
Q 010314 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP-LYHLDSVSALL 285 (513)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP-TsgLD~~~~~~ 285 (513)
..+.+..++.-+... ....-.+.+|.+|+.++..+++++|+||| +.++|.....+
T Consensus 146 ----------------~~~~~~~~l~~~~~~--------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~ 201 (295)
T 1ls1_A 146 ----------------RLLGEKVGVPVLEVM--------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE 201 (295)
T ss_dssp ----------------HHHHHHHTCCEEECC--------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHH
T ss_pred ----------------HHhcccCCeEEEEcC--------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHH
Confidence 011223344321100 01233456789999998899999999999 99999988888
Q ss_pred HHHHHHHH
Q 010314 286 MMVTLKKL 293 (513)
Q Consensus 286 i~~~L~~l 293 (513)
+.+..+.+
T Consensus 202 l~~~~~~~ 209 (295)
T 1ls1_A 202 LARLKEVL 209 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhc
Confidence 87777665
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.2e-12 Score=137.62 Aligned_cols=159 Identities=18% Similarity=0.103 Sum_probs=99.6
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcc---------
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT--------- 192 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~--------- 192 (513)
...+++++++.+.+|+.++|+||||+|||||+++|++++++.. .|.+.+++.+.......++++++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~--~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET--LEDILVFPNPEDENMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS--CEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc--CCeEEEeCCcccccCCcEEEEecchHHHHHHHHHH
Confidence 3468899999999999999999999999999999999988752 48888887665444456788876431
Q ss_pred -------------cCCCCCHHHHHHHHHHhcCCCch-hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 193 -------------LIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 193 -------------l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+..+++.+|+.....-..+... .+.. ....+.+|..+.... ...++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~---~~~~~L~G~~~~~~~------~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATG---AHAGALLGDVRHDPF------QSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEECTT---CCHHHHHCEECCCCC----------CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEEcCC---CCHHhcCceEEechh------hcCCccccccccccC
Confidence 11111111111000000000000 0000 001111121111001 114799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~ 292 (513)
++....++.+||+||... |++..+..+++.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899999888888874
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=112.30 Aligned_cols=148 Identities=23% Similarity=0.253 Sum_probs=86.5
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhc
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (513)
+-+++|+++.|.||+|||||||+..++......+ |. +.|+.-+..+.+ . +.
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~--------------vlyi~~E~~~~~-------~-~a---- 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---GI--------------AAFIDAEHALDP-------E-YA---- 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CC--------------EEEEESSCCCCH-------H-HH----
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---Ce--------------EEEEECCCCcCH-------H-HH----
Confidence 3688999999999999999999888875432221 22 333333321110 0 11
Q ss_pred CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------
Q 010314 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR--PHVLFIDEPLYHL---------- 278 (513)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~--P~iLllDEPTsgL---------- 278 (513)
+.+|+.. .+-.+. ...+.. +-+.++++++.+ |+++++||+++.+
T Consensus 107 ----------------~~lG~~~-~~l~i~-----~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 107 ----------------KKLGVDT-DSLLVS-----QPDTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp ----------------HHTTCCG-GGCEEE-----CCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred ----------------HHcCCCH-HHeEEe-----cCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 1112110 000010 112332 345678888765 9999999999998
Q ss_pred CH---HHHHHHHHHHHHH----HHcCCeEEEEEeCChH---------------HHHhcCCEEEEEeCCeEEEEeC
Q 010314 279 DS---VSALLMMVTLKKL----ASTGCTLLFTINQSST---------------EVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 279 D~---~~~~~i~~~L~~l----~~~g~tvi~t~h~~~~---------------~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|+ ..++.+.+.+++| .+.|+|||++.|.... .+..+||.++.++.++++..|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2223444555554 3459999997775421 2567899999998877655443
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.1e-11 Score=126.50 Aligned_cols=177 Identities=15% Similarity=0.057 Sum_probs=101.8
Q ss_pred eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCC--CHHHHH
Q 010314 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSL--TVREYL 203 (513)
Q Consensus 128 ~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G--~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~l--TV~E~l 203 (513)
.+++.+.++..++|.|++||||||++++|.. +..... |++.+.+.+.... . ++....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p---~~v~l~liDpK~~-e-----l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP---EDVRFIMIDPKML-E-----LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT---TTEEEEEECCSSS-G-----GGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC---ceEEEEEECCchh-h-----hhhhccCCcccceeecCH
Confidence 4677788899999999999999999999875 333322 6666555442210 0 0110111221 122222
Q ss_pred HHHHH-hcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH----------HHHHHHhhCCC-EEEE
Q 010314 204 YYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV----------RIARELVMRPH-VLFI 271 (513)
Q Consensus 204 ~~~~~-~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv----------~IAraL~~~P~-iLll 271 (513)
..+.. ++. ...+.+++ .+++..+|+.++.+..- .....+||||+||. .+|+++...|. ++++
T Consensus 230 ~~a~~~L~~--~~~EmerR-~~ll~~~Gv~~i~~yn~---~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvI 303 (512)
T 2ius_A 230 KDAANALRW--CVNEMERR-YKLMSALGVRNLAGYNE---KIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLV 303 (512)
T ss_dssp HHHHHHHHH--HHHHHHHH-HHHHHHTTCSSHHHHHH---HHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEE
T ss_pred HHHHHHHHH--HHHHHHHH-HHHHHHcCCccHHHHHH---HHHHHhhcCCcccccccccccchhccccccccCCcEEEEE
Confidence 11111 110 01233333 46788888876543210 01125788887752 35667778898 8999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH----cCCeEEEEEeCChHH-----H-HhcCCEEEE
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLAS----TGCTLLFTINQSSTE-----V-FGLFDRICL 320 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~----~g~tvi~t~h~~~~~-----i-~~~~D~v~v 320 (513)
||++.-+|.. ...+.+.|.++++ .|.++|+++|.+..+ + ..+.+||++
T Consensus 304 DE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 304 DEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp ETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred eCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 9999988843 3456666666643 277899999987622 3 345556655
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.5e-10 Score=119.92 Aligned_cols=50 Identities=14% Similarity=0.011 Sum_probs=46.6
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (513)
.+|+++|+.+++ ++++|+|||||||||||++|+|+++|+. |+|.++|++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDL---TLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCT---TTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEEc
Confidence 489999999999 9999999999999999999999999875 9999999653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-09 Score=108.72 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=87.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG 213 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 213 (513)
.+|++++|+|+||+||||++..|++.+.+.. | ..+.++.++.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G-------------~~V~lv~~D~~---r~~a~eqL~~~~------ 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK---H-------------KKIAFITTDTY---RIAAVEQLKTYA------ 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT---C-------------CCEEEEECCCS---STTHHHHHHHHH------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---C-------------CEEEEEecCcc---cchHHHHHHHHH------
Confidence 4799999999999999999999999987532 4 23556665542 235555553311
Q ss_pred chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010314 214 FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (513)
Q Consensus 214 ~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l 293 (513)
+.+++... ...+. ..-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-+
T Consensus 158 -------------~~~gl~~~-----------~~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l 208 (296)
T 2px0_A 158 -------------ELLQAPLE-----------VCYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETI 208 (296)
T ss_dssp -------------TTTTCCCC-----------BCSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHS
T ss_pred -------------HhcCCCeE-----------ecCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHH
Confidence 11222110 01122 333555554 5999999999 9999987665555444433
Q ss_pred H---HcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 294 A---STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 294 ~---~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
. ..+.++|+-..+...++.++++++..+..+.++..
T Consensus 209 ~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 209 PFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred hhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 2 12334444223334577888887766777777764
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.2e-11 Score=118.56 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=74.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEE-------------------eCCcEEEEEcCCCCcHHHHHHHHHcCCC--CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYA-------------------LPGTMTVIMGPAKSGKSTLLRAIAGRLP--HS 163 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~ 163 (513)
.++++||++.|. .+++++++.+ .+|+++||+||||||||||+++|+|+++ |+
T Consensus 37 ~i~~~~v~~~y~-------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYL-------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp TCCHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccchHhHHHHHH-------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 578888887762 5889999988 8999999999999999999999999877 66
Q ss_pred CCceeEEEE---CCEeCCC-CCceEEEEcCCcccCCCCCHHHHHHHHHHh
Q 010314 164 ARMYGEVFV---NGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALL 209 (513)
Q Consensus 164 ~~~~G~I~i---~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (513)
+ |+|.+ +|..... ..+.++++ |...+++.+|+.+++.+...+
T Consensus 110 ~---G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 110 H---RRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp C---CCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred C---CeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 4 99999 8754311 12346777 777777889999999776544
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-10 Score=106.95 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=45.0
Q ss_pred eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----CCCceEEEEcCCcccCCCCCHHHHH
Q 010314 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 130 s~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-----~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
|+.+.+|++++|+||||||||||+++|+|+.+ .+.+.+.... .....++|++|++.+++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 45677999999999999999999999999864 2444443321 1134578888887666555554443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.6e-12 Score=126.54 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=78.2
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCcc-cCCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERETT-LIGS 196 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~~-l~~~ 196 (513)
..+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.+... . ...+++++|... ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 35789999999999 89999999999999999999875 2889998754211 0 123455666542 4555
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 010314 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~i 268 (513)
+++.|++......+.... ........+ ..+..+. .|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~-~~~~~~~~~---------~~~~ll~------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGV-GGGNDEREQ---------TLNQLLV------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC---------CHHHHH---------HHHHHHH------HHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhccccccc-CCcchHHHH---------HHHHHHH------HHhCCCCCCCEEEEEecCCchh
Confidence 666666633211110000 000000111 1222222 7899999999999999999976
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-09 Score=102.25 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l 293 (513)
+.+.+|++|+.+|+++++| ||+||.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3478899999999999999 9999999999999988653
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.8e-12 Score=123.06 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=77.8
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCc-ccCCCC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERET-TLIGSL 197 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~-~l~~~l 197 (513)
.+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.+... . .+.+++++|.. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 5789999999999 99999999999999999999875 2889988754210 0 12344555553 234555
Q ss_pred CHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010314 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (513)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP 274 (513)
++.|++......+.... ........+ ..+.++. .|||||+||+.|++++..+|++ +|++
T Consensus 112 ~~~Deid~l~~~~~~~~-~~~~~~~~~---------~~~~ll~------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGV-GGGNDEREQ---------TLNQLLV------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETHHHHHC----------CHHHHH---------HHHHHHH------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhhhhhhcccCccc-cccchHHHH---------HHHHHHH------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 66666532211110000 000000111 1122222 6899999999999999999986 4543
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-08 Score=98.55 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=23.3
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHH-cCCCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPH 162 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~-G~~~~ 162 (513)
.+..+++||.+++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35688999999999999999999999999999999 99754
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-08 Score=104.09 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=28.9
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
+=+++|+++.|.||+|||||||+..+++...+.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~ 88 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM 88 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 367899999999999999999999999876543
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.3e-09 Score=103.78 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=40.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (513)
.|+++|+...+. . ++.+.+ ++++|+|||||||||||++|+|+++|+. |+|.++|.+.
T Consensus 9 ~l~l~~~~~~~~----------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~---G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFA----------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDL---TLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEE----------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCT---TTC-------
T ss_pred EEEEEeeecccC----------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCC---CeEEECCEEc
Confidence 467777754331 0 455566 8999999999999999999999999875 9999998654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-07 Score=101.02 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCCeEEEEEeCC
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEP----------LYHLDSVSALLMMVTLKKLA----STGCTLLFTINQS 307 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEP----------TsgLD~~~~~~i~~~L~~l~----~~g~tvi~t~h~~ 307 (513)
|++++|..+++|....|.|||+||+ +.|.|......+.++|..+. ..+..||.++|++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 6778888899999999999999999 44677777677777777663 2466778777775
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-07 Score=94.91 Aligned_cols=127 Identities=12% Similarity=0.169 Sum_probs=83.5
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
.-|+.+.+-+.+|+++.|.|++|+|||||+.-++......+ +. +.|+.- .++..+.+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g---~~--------------Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD---RG--------------VAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CE--------------EEEEES------SSCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---Ce--------------EEEEeC------CCCHHHHH
Confidence 35666666788999999999999999999988876432111 22 233221 23443322
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
.++......+.+..+.+ + .||.++.+|+..|...+.+++++|.|+|... .
T Consensus 91 ----------------~Rlls~~~~v~~~~l~~---g------~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i 140 (338)
T 4a1f_A 91 ----------------LRALSDLTSINMHDLES---G------RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----I 140 (338)
T ss_dssp ----------------HHHHHHHHCCCHHHHHH---T------CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----H
T ss_pred ----------------HHHHHHhhCCCHHHHhc---C------CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----H
Confidence 11222222233333332 2 7999999999999999999999999998654 3
Q ss_pred HHHHHHHHHHHH-c-CCeEEEE
Q 010314 284 LLMMVTLKKLAS-T-GCTLLFT 303 (513)
Q Consensus 284 ~~i~~~L~~l~~-~-g~tvi~t 303 (513)
.+|...++++.+ . |..+|++
T Consensus 141 ~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 141 EQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEE
Confidence 366677777764 3 5666664
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.8e-08 Score=90.62 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~ 294 (513)
...|++|+.+|.++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.9e-09 Score=96.88 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=31.9
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (513)
...++|++++|+||||||||||+++|+|.+ |.+.++|...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 344589999999999999999999999974 7788887553
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-06 Score=88.90 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=30.9
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.-|+.+.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 457777777899999999999999999998888753
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-07 Score=107.17 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=58.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEE
Q 010314 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (513)
+.-+|.|+.+|..++..++.++++||+|||.. +||......+++.+........+|+++.+++...+..+++..
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 44689999999999999999999999999996 999887777777776655456788886455556777777743
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-08 Score=104.03 Aligned_cols=150 Identities=15% Similarity=0.141 Sum_probs=82.4
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH---H
Q 010314 135 PGTM-TVIMGPAKSGKSTLLRAIAGRLPHS--------ARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE---Y 202 (513)
Q Consensus 135 ~Ge~-~aliGpsGsGKSTLl~~L~G~~~~~--------~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E---~ 202 (513)
.|-. ++|+|++|||||||++.|+|..... ....|.|.++|.+... ....|++.+.+ ...|.. .
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp----~~lve~f~~t 251 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIP----PQIVDAFFVT 251 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCC----GGGHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCC----HHHHHHHHHH
Confidence 3444 9999999999999999999986421 0246899998864311 11234443321 111221 1
Q ss_pred HHHHHH----h---cCCCc---hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH----HHH-hhCCC
Q 010314 203 LYYSAL----L---QLPGF---FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA----REL-VMRPH 267 (513)
Q Consensus 203 l~~~~~----~---~~~~~---~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA----raL-~~~P~ 267 (513)
+..... + ..... ..+....+.++++.+++.+..--.+. ..+..+|+|+++|+.++ +++ ..+|+
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~--NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL--NKIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE--ECGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE--ECCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 110000 0 00110 01112234667777766432200000 01225688888988887 555 33444
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 010314 268 VLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (513)
Q Consensus 268 iLllDEPTsgLD~~~~~~i~~~L~~l~~ 295 (513)
+ +|+|++|......+++.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988753
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.6e-08 Score=96.72 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=35.9
Q ss_pred eEEEEeE-EEEEeccccccceeeeeeeeEEeC---CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 105 SVVWKDL-TVTIKGKRRYSDKVVKSSNGYALP---GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 105 ~l~~~~l-s~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++++|+ ++.|. ....+|+++|+.+.+ |++++|+|++||||||++++|++.+
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6899999 99882 234699999999999 9999999999999999999999864
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.9e-07 Score=93.65 Aligned_cols=58 Identities=9% Similarity=0.033 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEE
Q 010314 245 MKGLPCGERRRVRIARELVMRPHVLFID-EPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~~~P~iLllD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~ 304 (513)
+..+|+|++|++. +.+...++-|+++| +|+.++|......+++.+..+.. +..+|++.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~ 287 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI 287 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 3478999998886 66666778889999 99999999998888888877643 66676666
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=6.4e-08 Score=90.98 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=40.6
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEeC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV--FVNGAKS 177 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I--~i~G~~~ 177 (513)
...+.+++..++|++++|+||||||||||+++|++++.. .|.+ +++|...
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 455667777789999999999999999999999998763 2766 7777543
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.22 E-value=7.5e-06 Score=83.71 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=77.7
Q ss_pred eeeee-eEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 126 VKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 126 L~~vs-~~i~~Ge~~aliGpsGsGKSTLl~~L~G~--~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
|+.+- +-+++|+++.|.||+|+|||||+..|+.. .++.. | |. ...+.|+.-+..+ .....
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~---g-----g~-----~~~vlyi~~E~~~----~~~~l 173 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAG---G-----YP-----GGKIIFIDTENTF----RPDRL 173 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTT---T-----BC-----CCEEEEEESSSCC----CHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccccc---C-----CC-----CCeEEEEECCCCC----CHHHH
Confidence 44433 56889999999999999999999998874 22210 0 00 1234455443321 12222
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH-HHHHHHHHHHHh----hCCCEEEEeCCCCC
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG-ERRRVRIARELV----MRPHVLFIDEPLYH 277 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG-qrqRv~IAraL~----~~P~iLllDEPTsg 277 (513)
......+... .+++++.+. +....++. +.+.+..++.++ .+++++++|+.++-
T Consensus 174 ~~~~~~~g~~---------~~~~l~~l~-------------~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 174 RDIADRFNVD---------HDAVLDNVL-------------YARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHTTCC---------HHHHHHTEE-------------EEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHcCCC---------HHHHHhcee-------------EeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 2111111110 011222110 11122333 234555666666 56999999999987
Q ss_pred CCHH------------HHHHHHHHHHHHHHc-CCeEEEEEeC
Q 010314 278 LDSV------------SALLMMVTLKKLAST-GCTLLFTINQ 306 (513)
Q Consensus 278 LD~~------------~~~~i~~~L~~l~~~-g~tvi~t~h~ 306 (513)
+... ...++++.|+.++++ +.+||++.|-
T Consensus 232 ~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 232 FRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 6432 135566667777654 8888885553
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.4e-07 Score=94.10 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=54.0
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--------------CceEEEE-cCC
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--------------YGSYGFV-ERE 190 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--------------~~~~~yv-~Q~ 190 (513)
++++++.+.+|++++|+|+||+||||++..|++.+.+.+ |+|.+.+.+.... ...+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 368888889999999999999999999999999987654 8898876553210 2346777 565
Q ss_pred cccCCCCCHHHHH
Q 010314 191 TTLIGSLTVREYL 203 (513)
Q Consensus 191 ~~l~~~lTV~E~l 203 (513)
....|..++.+++
T Consensus 172 ~~~~p~~~~~~~l 184 (320)
T 1zu4_A 172 LNADPASVVFDAI 184 (320)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4444433444444
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=81.82 Aligned_cols=142 Identities=20% Similarity=0.251 Sum_probs=78.7
Q ss_pred eeeeee-eEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 125 VVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 125 iL~~vs-~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~-~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
.|+.+- +-+++|+++.|.||+|+|||||+..++... .+.. .| |. ...+.|+.-+..+ .....
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~--~g-----g~-----~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE--KG-----GL-----SGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG--GT-----CC-----SCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc--cC-----CC-----CCeEEEEECCCCC----CHHHH
Confidence 344442 578999999999999999999999888642 2210 01 10 1234454433221 12211
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCCh--hHHhhhhcCCCCCCCCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCC
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCG-ERRRVRIARELV---MRPHVLFIDEPLY 276 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~vg~~~~~~~LSGG-qrqRv~IAraL~---~~P~iLllDEPTs 276 (513)
.... +.+++. ++.+... +.+..++. +.+.+..++.++ .+|+++++|+.++
T Consensus 159 ~~~~--------------------~~~g~~~~~~~~~l~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 159 ENMA--------------------KALGLDIDNVMNNIY----YIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHH--------------------HHTTCCHHHHHHTEE----EEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHH--------------------HHhCCCHHHHhccEE----EEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 1111 112221 1111110 11223433 335677788888 6799999999998
Q ss_pred CCCH--------H----HHHHHHHHHHHHHH-cCCeEEEEEeC
Q 010314 277 HLDS--------V----SALLMMVTLKKLAS-TGCTLLFTINQ 306 (513)
Q Consensus 277 gLD~--------~----~~~~i~~~L~~l~~-~g~tvi~t~h~ 306 (513)
-++. . ...++++.|+.+++ .+.+||++.|-
T Consensus 215 l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 215 HFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 6532 1 12456666666664 48888886553
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.19 E-value=6.9e-07 Score=82.10 Aligned_cols=38 Identities=32% Similarity=0.151 Sum_probs=34.1
Q ss_pred ee--eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 125 VV--KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 125 iL--~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
.+ +++++.+.+| +++|+||||||||||+++|.+++.+.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 45 7889999999 99999999999999999999987654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.15 E-value=1e-06 Score=82.21 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=27.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
++.+|++++|+||||||||||+++|++++.++
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 46799999999999999999999999998554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=6.5e-07 Score=84.09 Aligned_cols=69 Identities=20% Similarity=0.113 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHH--HhcCCEEEEEe
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV--FGLFDRICLLS 322 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i--~~~~D~v~vL~ 322 (513)
+.|+.+|..++..+..+|+.+.++ .+.++|.....+.+.+... .+.++|+.+|... +. ...||.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~-e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLI-ENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTT-TTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhh-hcCcHhhCCEEEEEE
Confidence 678888999988888887654333 3345566555555544332 3557777665432 33 56789888874
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-06 Score=82.21 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=24.8
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
...+++||||.+.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345899999999999999999999999999999999865
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-06 Score=80.90 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~ 173 (513)
+|++++|+||||||||||+++|++..++. ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 79999999999999999999999987642 24655543
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-08 Score=110.17 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=76.8
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CceEEEEcCCcc-cCCCC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETT-LIGSL 197 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~-l~~~l 197 (513)
.+++++++.+++| ++|+||||+|||||+++|+|... .+.|.++|.+.... ...+..++|... ..|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 4688889999999 89999999999999999999864 28888888653211 012334444432 23333
Q ss_pred CHHHHHHHHHHhcC---CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010314 198 TVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (513)
Q Consensus 198 TV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP 274 (513)
.+.|++......+. .....+....+ +.++. .||||++|+..|+++...+|++ |||+
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l-------------~~LL~------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTL-------------NQLLV------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHH-------------HHHHH------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHH-------------HHHHH------HhcccccCccEEEEEecCChhh--cCcc
Confidence 33333321000000 00001111112 22222 5788999999999999999987 8988
Q ss_pred CC
Q 010314 275 LY 276 (513)
Q Consensus 275 Ts 276 (513)
.-
T Consensus 186 Ll 187 (499)
T 2dhr_A 186 LL 187 (499)
T ss_dssp TS
T ss_pred cc
Confidence 75
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=6.7e-07 Score=94.63 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=50.3
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEE-EeCCeEEEEeChH
Q 010314 264 MRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL-LSNGNTLFFGETL 333 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v-L~~G~iv~~G~~~ 333 (513)
.+|+|||+||+..-.+. ..+..++..+..+.+.|+.||+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999887664 6788899999998878889999888865443333344332 4556666666553
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-05 Score=77.62 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHH----cCCeEEEEEeCC---hHHH
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDS----------VSALLMMVTLKKLAS----TGCTLLFTINQS---STEV 311 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~----------~~~~~i~~~L~~l~~----~g~tvi~t~h~~---~~~i 311 (513)
+++++.|..++.+...+|.+||+||+.+.++. .....++..+..+.. .+..||.+++.+ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 35667777777888889999999999877653 223334444444321 134455566653 2334
Q ss_pred HhcCCEEEEE
Q 010314 312 FGLFDRICLL 321 (513)
Q Consensus 312 ~~~~D~v~vL 321 (513)
..-|++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456665544
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=5.8e-06 Score=84.84 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEEe
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTIN 305 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h 305 (513)
.++.++++..+++..+.+|+++|+.-..+..|... ...+++++.+...| .++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999888774334445433 45566777776555 45555443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.01 E-value=3.2e-05 Score=78.95 Aligned_cols=43 Identities=7% Similarity=-0.049 Sum_probs=34.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCeEEEEEeCC
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS---TGCTLLFTINQS 307 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvi~t~h~~ 307 (513)
.+|.||++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888877665 577888888876
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=9.9e-07 Score=84.80 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=33.5
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
+..++|++++|.|+||||||||+++|+|+ + |+|.+.+.+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~---g~v~~~~~~ 53 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----K---NDICLLTEP 53 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----T---TTEEEECCT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----c---CCeEEEecC
Confidence 34468999999999999999999999997 2 888887764
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.7e-06 Score=79.52 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=27.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 48999999999999999999999999876
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.2e-06 Score=85.64 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=41.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEeCCCC------CceEEEEcCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVF--------VNGAKSEMP------YGSYGFVERE 190 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~---G~~~~~~~~~G~I~--------i~G~~~~~~------~~~~~yv~Q~ 190 (513)
.+|++++|+||||||||||+++|+ |+..++ +|.|. .+|.+.... ...+++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 589999999999999999999999 987765 48888 777654211 1346667654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.88 E-value=2.1e-06 Score=80.67 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=33.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
..+|++++|+|+||||||||+++|++.+++.+ |.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~---~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQG---ISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC---CeEEEecc
Confidence 45899999999999999999999999886643 77766543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.7e-05 Score=77.87 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.++..+.|.||+|+|||||+++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4678899999999999999999999875
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.82 E-value=3.2e-06 Score=87.61 Aligned_cols=44 Identities=23% Similarity=0.168 Sum_probs=38.5
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i 172 (513)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 35899999999999999999999999999999999953 276654
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=75.36 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=26.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+.+|.+++|+|+||||||||++.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345899999999999999999999999753
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.2e-06 Score=75.64 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=29.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
.+|++++|+|+||||||||+++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 379999999999999999999999863 56666653
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=5.5e-06 Score=92.11 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=31.8
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
+.+++|..++|+|++|+|||||++.|++...+. ...|+| .+|.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~ 46 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGT 46 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCc
Confidence 456789999999999999999999999765432 124776 4553
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.77 E-value=6.6e-06 Score=82.53 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC--eEEEEEeCChHHHHhcCCEE
Q 010314 248 LPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLAST-GC--TLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 248 LSGGqrqRv~IAraL~--~~P~iLllDEPTsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~t~h~~~~~i~~~~D~v 318 (513)
+++|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++++. |. .+.++.|+. ..+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHH
Confidence 888886 5667776 78999999 7899876 67788888888754 43 333433333 3455555544
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.1e-06 Score=85.87 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=34.1
Q ss_pred ceeeeeeeeEEeCCc------EEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 123 DKVVKSSNGYALPGT------MTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge------~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.+.|++++..+..++ ++||+||||||||||+++|++++..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456777777777766 9999999999999999999999763
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.73 E-value=5.8e-06 Score=89.80 Aligned_cols=42 Identities=36% Similarity=0.433 Sum_probs=35.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVF-VNGAK 176 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G-~I~-i~G~~ 176 (513)
.+++|++++|+|+||||||||+++|+|++.+.+ | +|. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~---G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG---GRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC---SSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC---CceEEEECCcH
Confidence 467999999999999999999999999987753 5 674 77643
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00011 Score=77.45 Aligned_cols=170 Identities=17% Similarity=0.125 Sum_probs=94.6
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
.-|+.+.+-+.+|+++.|.|++|+|||||+..++....... | ..+.|+.- .++..+..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~---g-------------~~vl~~sl------E~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE---G-------------VGVGIYSL------EMPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---C-------------CCEEEEES------SSCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---C-------------CeEEEEEC------CCCHHHHH
Confidence 45777777799999999999999999999988876532210 1 11223221 12333222
Q ss_pred HH--HHHhcCCCc------h-hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEe
Q 010314 204 YY--SALLQLPGF------F-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV--MRPHVLFID 272 (513)
Q Consensus 204 ~~--~~~~~~~~~------~-~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~--~~P~iLllD 272 (513)
.- +.....+.. . .+...++.+.++.+.-..+ .+. ...++|..+. .+.++.+. .+|+++++|
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l---~i~---d~~~~s~~~l--~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPI---YID---DTPDLTLMEV--RARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCE---EEE---CCTTCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCE---EEE---CCCCCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence 11 111111100 0 1112233333333211111 010 1125676665 34556665 489999999
Q ss_pred CCCCCCCH----------HHHHHHHHHHHHHHHc-CCeEEEEEeCCh------------------HHHHhcCCEEEEEeC
Q 010314 273 EPLYHLDS----------VSALLMMVTLKKLAST-GCTLLFTINQSS------------------TEVFGLFDRICLLSN 323 (513)
Q Consensus 273 EPTsgLD~----------~~~~~i~~~L~~l~~~-g~tvi~t~h~~~------------------~~i~~~~D~v~vL~~ 323 (513)
..+.-.+. .....+.+.|+.++++ +.+||+++|-.. ..+.+.||.|++|+.
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 98764432 1235677888888765 899999766221 024667899998853
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.72 E-value=1.3e-05 Score=75.57 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3899999999999999999999999865
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.72 E-value=1.2e-05 Score=72.93 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.72 E-value=3.6e-05 Score=81.04 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~ 173 (513)
++.+++++|++|+||||++..|++.+...+ ++|.+-
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEE
Confidence 588999999999999999999999876643 556553
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.63 E-value=3e-05 Score=72.21 Aligned_cols=51 Identities=16% Similarity=0.036 Sum_probs=30.7
Q ss_pred hCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHHcCCeEEEEEeCChHHHHhc
Q 010314 264 MRPHVLFIDEPLY-HLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 264 ~~P~iLllDEPTs-gLD~~~~~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (513)
.++++|++||+-. .++...+..++ .++......+..+|++++.+..++...
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHH
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH
Confidence 4678999999932 23333344344 455554456677888888876665544
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3.3e-05 Score=69.33 Aligned_cols=31 Identities=35% Similarity=0.401 Sum_probs=24.7
Q ss_pred eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 127 ~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
++.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445555555 999999999999999999873
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.60 E-value=2.6e-05 Score=81.93 Aligned_cols=33 Identities=33% Similarity=0.297 Sum_probs=28.8
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
+.+.+|++++|+||||||||||+++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 446679999999999999999999999988764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=9.8e-05 Score=74.16 Aligned_cols=47 Identities=6% Similarity=0.141 Sum_probs=36.0
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChH
Q 010314 263 VMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (513)
Q Consensus 263 ~~~P~iLllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (513)
..++.+||+||+-. ..+...+..+...+..+.+.+..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 35699999999865 234477888999998887778788887776543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=1.3e-05 Score=76.94 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
+.|...+.. ...+.+-+++++||.-. ++|......+++.+......-.+++++.+.+...+.++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456655553 33578999999999966 68877665555555544333457788777776655566553
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0016 Score=66.81 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.2
Q ss_pred eeeeee--eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 125 iL~~vs--~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-|+.+- +=+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 454443 35789999999999999999999888754
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0003 Score=74.42 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=29.7
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.-|+.+.+=+.+|+++.|.|++|+|||||+--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 356666666889999999999999999998777653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.45 E-value=1.3e-05 Score=81.84 Aligned_cols=50 Identities=22% Similarity=0.174 Sum_probs=41.9
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
..+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+.+ |+|.+-+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~---~~v~v~~~ 92 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG---LKVAVIAV 92 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEEee
Confidence 457889999999999999999999999999999999876543 66665443
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.45 E-value=2.9e-05 Score=78.88 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.+..+.|.||+|+|||||++.+++...+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999987643
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=3e-05 Score=70.96 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G--~I~i~G~ 175 (513)
+|++++|+|++||||||++++|++.+++. | .|.++|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~----g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCH----GIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhC----CCcEEEECCh
Confidence 79999999999999999999999986542 4 5555543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.42 E-value=5.4e-05 Score=72.82 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=27.4
Q ss_pred eeeeeeEEe---CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 126 L~~vs~~i~---~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
|.++++.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 455555555 8999999999999999999999998765
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0016 Score=62.16 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 3799999999999999999997654
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.37 E-value=2.3e-05 Score=81.05 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=45.6
Q ss_pred eEEEEeEEEEEeccccccceeee--------------eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVK--------------SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+.|+|+++.|+. .+..|+ |+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~----er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC----SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC----CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 5789999998864 345788 899999999999999999999999999999864
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00089 Score=67.25 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=28.2
Q ss_pred eeeeee-eEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 125 VVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 125 iL~~vs-~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
.|+.+- +-+++|+++.|.|++|+|||||+..++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5688999999999999999999988875
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.28 E-value=3.8e-05 Score=83.30 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=39.1
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (513)
.++.++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 4677777777 89999999999999999999999987654 37776655
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=5.8e-05 Score=77.30 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
++.+++|+|++|||||||++.|+|.+.+.+ |+|.+.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~---~~v~V~~~d 111 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERG---HKLSVLAVD 111 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcC---CeEEEEeec
Confidence 578999999999999999999999876653 777665543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00014 Score=68.76 Aligned_cols=25 Identities=40% Similarity=0.610 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.+++|+|+|||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999865
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00017 Score=67.87 Aligned_cols=31 Identities=32% Similarity=0.307 Sum_probs=24.6
Q ss_pred eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 128 ~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+.++.+.+ .+++|+|||||||||++++|.-.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555 49999999999999999998643
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00054 Score=64.57 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=30.9
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCe-EEEEEeCC
Q 010314 264 MRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCT-LLFTINQS 307 (513)
Q Consensus 264 ~~P~iLllDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vi~t~h~~ 307 (513)
.+|.+|++||.-.-- +......+.+.+..+.+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 468999999965432 233477788888888766665 77777654
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00013 Score=68.22 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=25.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+|.+++|+||||||||||.+.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4799999999999999999999998764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00046 Score=62.49 Aligned_cols=26 Identities=50% Similarity=0.718 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+|..++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999999964
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=6.8e-05 Score=70.66 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=32.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G--~I~i~G~ 175 (513)
+.+|.+++|+|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 4589999999999999999999999987643 26 6666653
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00025 Score=65.25 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.1
Q ss_pred eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 128 ~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777778999999999999999999999975
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00023 Score=65.61 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=29.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
.+++|+|+||||||||++.|.+.++..+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 578999999999999999999876543223467766543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00061 Score=71.71 Aligned_cols=39 Identities=36% Similarity=0.525 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEe
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPH------S---ARMYGEVFVNGAK 176 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~------~---~~~~G~I~i~G~~ 176 (513)
.++|+|+||+|||||++.|+|.... + ....|.+.++|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 7999999999999999999998531 0 0235889999875
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0024 Score=65.18 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356679999999999999999999764
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00065 Score=62.45 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=20.9
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+++++++..++. .++|+|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4778888887777 5689999999999999999984
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00095 Score=65.31 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++.-+.|.||+|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 356679999999999999999999864
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00029 Score=65.53 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 010314 138 MTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G 158 (513)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00021 Score=65.69 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=26.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
.+|.+++|+|++||||||+.+.|++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999987543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00018 Score=75.66 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=38.2
Q ss_pred eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 127 ~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
+++++. +|++++|+|+|||||||++..|++.+.+.+ |+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g---~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeecc
Confidence 567777 899999999999999999999999987754 788776544
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.011 Score=60.82 Aligned_cols=27 Identities=41% Similarity=0.512 Sum_probs=24.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
-+++|+++.|.|++|+|||||+..++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 578999999999999999999877764
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00023 Score=69.13 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=32.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
...++.++.|+|+|||||||+.+.|+..+.. |.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 4557889999999999999999999987642 556777643
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.005 Score=65.79 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=28.2
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34555545589999999999999999999876664
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00079 Score=69.24 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=26.4
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA 157 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~ 157 (513)
+++..+.+.+| +++|.|+|||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46667777664 99999999999999999986
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0038 Score=59.92 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+..-+.|.||+|+|||||+++|+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34458899999999999999999854
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00015 Score=74.14 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.6
Q ss_pred eeeeeeeeEEeCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 010314 124 KVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~--~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478888888999998 9999999999999999999875
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00016 Score=72.44 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=36.6
Q ss_pred ee-eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 127 KS-SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 127 ~~-vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
++ +++..+ |++++++|++|+||||++..|++.+.+.+ |+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecC
Confidence 45 677665 99999999999999999999999886643 667665443
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00081 Score=67.48 Aligned_cols=53 Identities=19% Similarity=0.065 Sum_probs=31.2
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHH-HHHHHHHcCCeEEEEEeCChHHHHhcC
Q 010314 263 VMRPHVLFIDEPLY-HLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLF 315 (513)
Q Consensus 263 ~~~P~iLllDEPTs-gLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (513)
+.+++|||+||.-. .++...+..++. +|......++.+|+|++.+..++...+
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~ 266 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKW 266 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTC
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 45789999999832 344444444554 555543456678888887766665543
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00031 Score=65.14 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=30.6
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+++++++..+++. ++|+|++|+|||||++.+.+-
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 57888888888875 689999999999999999873
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00053 Score=63.78 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999864
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.009 Score=60.05 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..-+.|.||+|+|||||+++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 355678999999999999999999865
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0014 Score=62.90 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=42.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEe---------CChHHHHhcCCEEEEEe
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (513)
+|+++++||--- |+. .+++.++.+++.|..||++-| .....+..+||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355666777777999999988 56678889999999875
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00069 Score=61.78 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+|.+++|+|++||||||+.+.|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999854
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00082 Score=60.12 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999643
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00096 Score=60.38 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00091 Score=59.87 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00023 Score=72.00 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=34.9
Q ss_pred ceeeeeeeeEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 123 DKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~--~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
..+++.++..++.|++ +.+.||+|+|||||++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3577788888889988 999999999999999999998654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00093 Score=69.45 Aligned_cols=45 Identities=20% Similarity=0.122 Sum_probs=31.8
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CC---CCceeEEEECCE
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-----HS---ARMYGEVFVNGA 175 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~-----~~---~~~~G~I~i~G~ 175 (513)
+.+..|..++|+|+||+|||||+++|+|... |. ....|.|.+.|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3455788899999999999999999999721 00 112488877663
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=63.50 Aligned_cols=26 Identities=42% Similarity=0.525 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+|.+++|+|++||||||+.+.|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999984
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00083 Score=64.91 Aligned_cols=32 Identities=34% Similarity=0.585 Sum_probs=23.3
Q ss_pred eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 128 ~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
++++.+.+| +.|.||+|+|||||+++|++...
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 333334444 88999999999999999998753
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0014 Score=59.62 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999998754
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0024 Score=64.68 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..+.|.||+|+|||||++.++...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 56679999999999999999999765
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00023 Score=73.11 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=33.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.+.+.+|+..+ ..+.+++++++.| +|+|++|+|||||++.|.|....
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 46677776554 2345788888876 99999999999999999887443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=59.55 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0012 Score=60.11 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999964
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0015 Score=62.99 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999653
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0016 Score=64.58 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (513)
.|.++.|.||||||||||.+.|+..++. |.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEec
Confidence 5789999999999999999999876532 5566665
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0015 Score=59.67 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+|.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999864
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0015 Score=63.50 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999854
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0017 Score=57.77 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 010314 138 MTVIMGPAKSGKSTLLRAI 156 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L 156 (513)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0067 Score=73.36 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
=+.+|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 58999999999999999999999998754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=58.52 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998653
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.011 Score=60.26 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.-+.|.||+|+|||||+++|+...
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 44558899999999999999999864
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0019 Score=60.14 Aligned_cols=24 Identities=46% Similarity=0.729 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987644
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.00097 Score=64.02 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCeEEEEEeC--C-------------------hHHHHhcCCE
Q 010314 260 RELVMRPHVLFIDEPLYH-LDSVSALLMMVTLKKLASTGCTLLFTINQ--S-------------------STEVFGLFDR 317 (513)
Q Consensus 260 raL~~~P~iLllDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvi~t~h~--~-------------------~~~i~~~~D~ 317 (513)
.+|..+|+++++||+-.- .+.......++.+..+...|..++.|+|- . .+.+++.||.
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~ 158 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFD 158 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCe
Confidence 334468999999997642 34333333444445555678888888871 1 1234556777
Q ss_pred EEEEeCCeEEEEeChHHHHHHhHhcCCCCC
Q 010314 318 ICLLSNGNTLFFGETLACLQHFSNAGFPCP 347 (513)
Q Consensus 318 v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~ 347 (513)
|.+++ -+|++++..+.+-....|
T Consensus 159 v~lvD-------~~p~~l~~rl~~g~vy~~ 181 (228)
T 2r8r_A 159 LVLID-------LPPRELLERLRDGKVYVP 181 (228)
T ss_dssp EEEBC-------CCHHHHHHHHHTTCCCCT
T ss_pred EEEec-------CCHHHHHHHHHCCCccCh
Confidence 66654 478887777765444444
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0023 Score=60.13 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999997
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0022 Score=58.93 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999854
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0026 Score=58.67 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0022 Score=58.30 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+.++.|+|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0027 Score=58.80 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999986543
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0026 Score=57.29 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G 158 (513)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0027 Score=57.51 Aligned_cols=23 Identities=52% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999753
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0028 Score=58.01 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++.+++|+|++||||||+.+.|+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6779999999999999999999864
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0029 Score=58.75 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+|.+++|.|++||||||+.+.|+-.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998643
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.002 Score=59.00 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.+++|+|++|||||||+..|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987654
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0032 Score=57.96 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999985
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0015 Score=60.91 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987643
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.013 Score=62.60 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.+..-+.|.||+|+|||+|+++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455668999999999999999998754
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0034 Score=58.31 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998653
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0037 Score=56.95 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999854
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0033 Score=57.17 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987643
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.055 Score=65.51 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=28.8
Q ss_pred eeeeeee--eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs--~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.-|+.+- +=+++|.++.|.||+|+|||||+-.++..
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3455554 35889999999999999999998777653
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.044 Score=56.26 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.-+.|.||+|+|||+|+++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999998764
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0034 Score=61.35 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0052 Score=57.78 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+|-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 57789999999999999999998643
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0048 Score=56.58 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998753
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0045 Score=57.15 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0032 Score=64.91 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=35.7
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 265 RPHVLFIDEPLYHLD---SVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 265 ~P~iLllDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
.|.++++||-=.-++ +.....+.+.+++.++.|..+++++|.+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 588999999887774 66777888888888888888888777764
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0038 Score=56.53 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=18.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.005 Score=55.98 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0086 Score=60.19 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=30.4
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
..+++....+ .|.-++|+|+||+|||||...|.+.
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5677776666 7889999999999999999999885
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0057 Score=57.88 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.007 Score=55.98 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+-+++|+|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.006 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37999999999999999999864
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0055 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999853
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0063 Score=56.82 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0064 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.364 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999985
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0091 Score=58.71 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999964
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.014 Score=53.08 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999766654
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0068 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0073 Score=54.09 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999864
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0052 Score=54.15 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 7899999999999999998764
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0059 Score=54.67 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+++|.|++||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0064 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998653
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0059 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++++|+.|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998763
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0065 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0064 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0076 Score=55.69 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
..+++|.|++||||||+.+.|+-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.006 Score=55.48 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0071 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0061 Score=57.39 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+.++.|+|++||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998643
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.007 Score=53.30 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|+.|+|||||++.+.+..
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7999999999999999999875
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0075 Score=56.36 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997643
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0071 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999763
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.098 Score=54.96 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999977654
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0077 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0082 Score=53.52 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0072 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0065 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998863
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0074 Score=52.98 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998753
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0075 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998864
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0075 Score=53.68 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+-.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999999753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0069 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999864
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0063 Score=55.14 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0072 Score=54.91 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.013 Score=60.12 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
|-.++|+|.+|+|||||++.|+|-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 345899999999999999999994
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.011 Score=52.74 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.-.++|+|++|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999999853
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.1 Score=64.05 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.5
Q ss_pred eeeeee--eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 125 iL~~vs--~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-|+.+- +=+++|.++.|.||+|+|||||+..++..
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 455554 35899999999999999999998877654
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0075 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999986
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0094 Score=57.90 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998753
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0097 Score=57.25 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++-+++|+|++||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999854
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0075 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999874
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.009 Score=57.59 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0087 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999999864
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0089 Score=52.53 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|+.|+|||||++.+.+-
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999974
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0091 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999999764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0083 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999999864
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.01 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0092 Score=53.71 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999753
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.01 Score=55.22 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-+++|+|+.||||||+.+.|+-.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0094 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0093 Score=54.20 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999853
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0099 Score=52.15 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=58.34 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
...+.|.||+|+|||||+++|++.....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 4689999999999999999999986543
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.017 Score=54.38 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.|..++|+||+|+|||||...|+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 6888999999999999999999875
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.011 Score=53.50 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
++|+|++|+|||||++.|.|....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEECCCCCCHHHHHHHHHhhccc
Confidence 789999999999999999997543
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.013 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0097 Score=52.85 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999875
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.011 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998864
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.011 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 7899999999999999999753
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|+.|+|||||++.|.+..
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999999864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0067 Score=54.42 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=53.46 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|++..
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999999763
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0065 Score=60.32 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=19.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998743
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.013 Score=55.48 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999864
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=58.59 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.013 Score=55.12 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+|-.++|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998653
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.012 Score=58.04 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.02 Score=58.03 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56689999999999999999999865
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.011 Score=57.42 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999973
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0099 Score=58.10 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|.+|+|||||++.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998763
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.014 Score=58.35 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999963
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.013 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999999864
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.013 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7999999999999999999864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.|.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999984
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.014 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999999763
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.01 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3799999999999999999764
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999863
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=52.70 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.--++|+|++|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999764
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=53.40 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|+.|+|||||++.|.+..
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999864
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.80 E-value=0.014 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.013 Score=60.27 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999986
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.015 Score=54.42 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999864
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.015 Score=53.19 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999999864
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.014 Score=56.24 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.015 Score=55.41 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+..++.|+||+||||+|..+.|+-.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999864
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.018 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998653
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.016 Score=57.05 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++.|+|++||||||+.+.|+-.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=56.45 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.015 Score=52.62 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999875
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.015 Score=54.19 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.015 Score=53.27 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|.+|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999973
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.019 Score=54.34 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+|.+++|.|++||||||+++.|+..+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876644
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.014 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37899999999999999999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.015 Score=56.94 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999863
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.015 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999999864
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.64 E-value=0.016 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.015 Score=53.15 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.016 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.015 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999854
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.016 Score=53.25 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.|.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 789999999999999999875
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.016 Score=51.76 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355678999999999999999987653
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.017 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999964
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.0085 Score=55.82 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.016 Score=55.51 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+|.+++|.|++||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3788999999999999999999987653
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.017 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|+.|+|||||++.|.+-.
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999999753
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.017 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|+.|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999864
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.017 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.017 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.017 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.016 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||++.+.+-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.016 Score=53.29 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.018 Score=60.06 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
....++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999999864
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.013 Score=53.21 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998864
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.019 Score=58.40 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378999999999999999999865
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.016 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7999999999999999988653
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.017 Score=54.41 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|++|+|||||++.|.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999875
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.019 Score=53.18 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999864
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.018 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999999864
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.016 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999975
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.017 Score=57.17 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|..|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.098 Score=49.55 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=43.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEe---------CChHHHHhcCCEEEEEe
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (513)
+.+++++||--- ||.. +++.|+.+++.|..||++-+ ..+..+..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999866 6543 33677777777999999888 77888999999999885
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.021 Score=54.96 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+|.+++|.|++||||||+++.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999999876643
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.015 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.021 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.019 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.022 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
-++|+|.+|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998644
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.021 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+-.
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCcHHHHHHHHHhCC
Confidence 7899999999999999988753
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.026 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+.|.||+|+|||||++.++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998754
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.029 Score=53.01 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=39.7
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChH---------HHHhcCCEEEEEe
Q 010314 263 VMRPHVLFIDEPLY----HLDSVSALLMMVTLKKLAST-GCTLLFTINQSST---------EVFGLFDRICLLS 322 (513)
Q Consensus 263 ~~~P~iLllDEPTs----gLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~---------~i~~~~D~v~vL~ 322 (513)
-.+|+++++|--+. .-|.....+++..|+.++++ +.+++++.|.... .+...+|-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45889999995432 11445566777888887754 9999997765321 1345689888884
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.021 Score=53.30 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998854
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.025 Score=56.87 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.+++|+||+|||||||...|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999764
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.021 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3799999999999999999974
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.02 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999864
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.025 Score=59.83 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=29.0
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++++.+ ..+-+|+.++|+|+||+|||||++.|+...
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 345555 445589999999999999999999998754
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.023 Score=57.27 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999864
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.022 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.044 Score=50.33 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
..|.-++|.|+||+|||||...|...
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 36888999999999999999988763
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.026 Score=53.38 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+|.++.|.|++||||||+++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999877643
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.025 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++.|+||+||||+|..+.|+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999864
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.02 Score=56.09 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.026 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
|.+++|.|+.||||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998653
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.015 Score=52.16 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=9.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999865
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.15 E-value=0.022 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999999853
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.14 Score=62.86 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=31.8
Q ss_pred cceeeeeee--eEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 122 SDKVVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 122 ~~~iL~~vs--~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
+...|+++. +-+++|+.+.|.||+|||||||...+.-
T Consensus 1065 Gi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1065 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345678887 5899999999999999999999998763
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.028 Score=53.37 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+|.++.|.|++||||||+++.|+-.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6889999999999999999999987654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.021 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
--++|+|++|+|||||++.+.+-
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999764
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.025 Score=54.84 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.024 Score=51.42 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 21 i~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999975
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.032 Score=53.26 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999987654
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.2 Score=48.05 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=44.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeC---------ChHHHHhcCCEEEEEe
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 322 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~---------~~~~i~~~~D~v~vL~ 322 (513)
.+.+++++||----.| +.++++.+.+.|..||++-++ ....+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999887654 666666667789999999998 7888999999999885
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.0099 Score=59.54 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
+++|||+|| ...|++..+..+++.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888877543 334555566553
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.025 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.0086 Score=57.85 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999999853
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.03 Score=52.66 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999974
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.029 Score=52.37 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-.++|+|.+|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.80 E-value=0.021 Score=55.30 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.+++|.|+.||||||+.+.|+..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 67789999999999999999998765
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.014 Score=54.22 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.|++.
T Consensus 14 i~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999865
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.032 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.03 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|+.|+|||||++.+.+..
T Consensus 32 i~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhhCC
Confidence 7899999999999999998753
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=93.61 E-value=0.041 Score=55.17 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999999764
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.036 Score=54.13 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
-.++|+|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999754
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=93.57 E-value=0.015 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=4.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.021 Score=51.56 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
--++|+|++|+|||||++.+.+-
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999653
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.038 Score=48.44 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=30.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHH
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (513)
..+|++||.- .|++..+..+++.|... .....+|++++.+..+
T Consensus 77 ~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 77 GGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVE 119 (145)
T ss_dssp TSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHH
T ss_pred CcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHH
Confidence 4689999984 68888888888888332 2245677777776543
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.029 Score=59.03 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|.+|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.033 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.037 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.036 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.044 Score=53.82 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
++..+.|.||+|+|||||+++++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 566789999999999999999887653
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.042 Score=57.02 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+++|+||+|||||||...|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998754
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.051 Score=54.80 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.9
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+-+.+|.++.|.||+|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 56888999999999999999999998753
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.12 Score=54.96 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--h---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 245 MKGLPCGERRRVRIARELV--M---------------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~--~---------------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
..++||||+|-.-+|.+.. . .-.+++|||. +-+|.......++++++| |.-+|+++-.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 3579999999654444333 2 2258999999 999999999999999976 5555654432
Q ss_pred hHHHHhcCCEEEEEe
Q 010314 308 STEVFGLFDRICLLS 322 (513)
Q Consensus 308 ~~~i~~~~D~v~vL~ 322 (513)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 4567788888774
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.045 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|.||.|+|||||++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998754
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.056 Score=49.70 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=37.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC---------hHHHHhcCCEEEEEe
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS---------STEVFGLFDRICLLS 322 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~---------~~~i~~~~D~v~vL~ 322 (513)
+++++++||--- +++ .+++.|+.+++.|..||++-+.. ...+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 36667777777788999887732 244566788887664
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.052 Score=52.07 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+||+|+.||||||+.+.|+-.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=92.95 E-value=0.053 Score=53.56 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
...+.|.||+|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788999999999999999764
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.054 Score=52.42 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+...+.|.||+|+|||||+++|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999975
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=92.71 E-value=0.065 Score=53.48 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+..-+.|.||+|+|||+|+++|+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45568999999999999999999753
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.06 Score=54.22 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+|..+.|.||+|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999998764
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.062 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.-+.|.||+|+|||||++.|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4457899999999999999999865
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.061 Score=54.64 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
..-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999987653
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=92.54 E-value=0.06 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.-+.|.||+|+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45568899999999999999999875
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.071 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+-.++|+|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999974
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.56 E-value=0.024 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4899999999999999988753
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=92.31 E-value=0.063 Score=55.64 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|.+++|||||++.|.|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.074 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
--++|+|++|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998876
|
| >1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=92.18 E-value=0.14 Score=51.29 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=26.1
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
..+++. +..-.|.-++|.|+||+|||||.-.|..
T Consensus 136 ~~~H~~-~v~~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 136 AQIHGV-LLEVFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEE-EEEETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceeEEE-EEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455553 3334688899999999999999988765
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.17 E-value=0.08 Score=53.46 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..+.|.||+|+|||||++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.062 Score=56.20 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|.+|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=92.14 E-value=0.049 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHH-HHcC
Q 010314 139 TVIMGPAKSGKSTLLRA-IAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~-L~G~ 159 (513)
++|+|++|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 5554
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.073 Score=57.00 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+.|-++.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3677899999999999999999998765
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=91.95 E-value=0.049 Score=55.29 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.016 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 36 i~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 36 LLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.095 Score=51.86 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
|.++.|.||.|+|||||++.++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 513 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-27 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-25 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-24 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-24 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-23 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-22 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-22 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 9e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-21 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-20 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-20 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-19 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-17 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-06 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.002 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 0.003 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 108 bits (272), Expect = 1e-27
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 19/233 (8%)
Query: 113 VTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
V ++ +R+ + V N G V++GP+ GK+T LR IAG + G +
Sbjct: 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRI 63
Query: 171 FVNGAKSEMPYGSY---GFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAI 226
+ V + + +TV E + + ++ P + V A
Sbjct: 64 YFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK--DEIDKRVRWAA 121
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+ + + N+ Y L G+R+RV +AR +V+ P VL +DEPL +LD+ + M
Sbjct: 122 ELLQIEELLNR------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM 175
Query: 287 MVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
+KKL T ++ + E + DRI +++ G L G
Sbjct: 176 RAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 106 bits (266), Expect = 7e-27
Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 21/243 (8%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
GA VV KDL I K +++K + G + ++GP +GK+T LR I+ +
Sbjct: 1 GAVVV-KDLRKRIGKK-----EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP 54
Query: 163 SARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
S+ G V V G ++ E ++ EYL + A +
Sbjct: 55 SS---GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEI 110
Query: 219 KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
+ +VE A L + + G R++ IAR L++ P + +DEP L
Sbjct: 111 EEMVERATEIAGLGEKIKD------RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL 164
Query: 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
D ++A + LK+ + G T+L + + EV L DRI L+ NG + G +
Sbjct: 165 DVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKER 223
Query: 339 FSN 341
+
Sbjct: 224 YKA 226
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 103 bits (258), Expect = 4e-26
Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 25/219 (11%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL+V Y V++ G + GP GK+TLL+ I+ L
Sbjct: 6 RDLSV------GYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG--- 56
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
E+ NG G F+ E + ++V +YL A L KN + DA+ +
Sbjct: 57 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK---VNKNEIMDALES 113
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288
+ + D K + L G RRV++A L++ + +D+P+ +D S ++
Sbjct: 114 VEVLDLKKK-------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 166
Query: 289 TLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326
++ ++ G ++ S E D L +T
Sbjct: 167 SILEILKEKGIVIIS-----SREELSYCDVNENLHKYST 200
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 101 bits (252), Expect = 5e-25
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 21/227 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K++T T K +K+ N G IMGP+ SGKST+L I + G
Sbjct: 5 KNVTKTYKMGEE-IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---G 60
Query: 169 EVFVNG---------AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
EV+++ +++ GFV ++ LI LT E + + + G +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM-SGE 119
Query: 220 NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+ A+ + +++ + + L G+++RV IAR L P ++ D+P LD
Sbjct: 120 ERRKRALECLKMAELEERF--ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 280 SVSALLMMVTLKKLA-STGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
S + +M LKKL G T++ T + V +RI L +G
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDI---NVARFGERIIYLKDG 221
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 99.6 bits (248), Expect = 2e-24
Identities = 46/210 (21%), Positives = 75/210 (35%), Gaps = 29/210 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSY-GFVER 189
G + ++GP +GKSTLL +AG G + G A S + ++ +
Sbjct: 24 AGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSATKLALHRAYLSQ 79
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
+ T + V YL + R ++ D A++L D + L
Sbjct: 80 QQTPPFATPVWHYLTLHQHDK------TRTELLNDVAGALALDDKLGR------STNQLS 127
Query: 250 CGERRRVRIARELVM-------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
GE +RVR+A ++ +L +DEP+ LD + L L G ++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187
Query: 303 TINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ R LL G L G
Sbjct: 188 -SSHDLNHTLRHAHRAWLLKGGKMLASGRR 216
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (249), Expect = 2e-24
Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 28/214 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS------YGFVE 188
G +T+I+GP SGKSTL+ I G L G V+ +
Sbjct: 29 KGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNKEPAELYHYGIVRTF 85
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFC------------QRKNVVEDAIHAMSLSDYAN 236
+ + +TV E L + + + + LS +
Sbjct: 86 QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD 145
Query: 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296
+ G L G+ + V I R L+ P ++ +DEP+ + A + + +L +
Sbjct: 146 RKAGE------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
G T L I V D + ++ NG + G
Sbjct: 200 GITFLI-IEHRLDIVLNYIDHLYVMFNGQIIAEG 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 99.1 bits (247), Expect = 5e-24
Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 32/242 (13%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
DL G +V+K + A G + I+G + SGKST LR I S G
Sbjct: 6 IDLHKRYGGH-----EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---G 57
Query: 169 EVFVNGAKSEMPYGSY------------------GFVERETTLIGSLTVREYLYYSALLQ 210
+ VNG + V + L +TV E + + +
Sbjct: 58 AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV 117
Query: 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270
L + + + + + A Y L G+++RV IAR L M P VL
Sbjct: 118 LGLSKHDARERALKYLAKVGIDERAQ-----GKYPVHLSGGQQQRVSIARALAMEPDVLL 172
Query: 271 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
DEP LD ++ +++LA G T++ + + + L G G
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVV-VTHEMGFARHVSSHVIFLHQGKIEEEG 231
Query: 331 ET 332
+
Sbjct: 232 DP 233
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 96.9 bits (241), Expect = 2e-23
Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 18/228 (7%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---R 165
+ L V +K + G + ++G +GK+T L AIAG +
Sbjct: 10 QSLHVYYGAI-----HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 166 MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDA 225
G+ N + V + LTV E L A + K +E
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE--GIKRDLEWI 122
Query: 226 IHAMS-LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
L + +L G L GE++ + I R L+ RP +L +DEP L +
Sbjct: 123 FSLFPRLKERLKQLGGT------LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176
Query: 285 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ ++K+ G T+L + Q++ + +L G + G+
Sbjct: 177 EVFEVIQKINQEGTTILL-VEQNALGALKVAHYGYVLETGQIVLEGKA 223
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 95.4 bits (237), Expect = 5e-23
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 13/207 (6%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY--GFVERET 191
G V +GP+ GKSTLLR IAG ++ ++F+ + ++ P G V +
Sbjct: 25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSG---DLFIGEKRMNDTPPAERGVGMVFQSY 81
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
L L+V E + + L V + L+ ++ K L G
Sbjct: 82 ALYPHLSVAENMSF-GLKLAGAKKEVINQRVNQVAEVLQLAHLLDR------KPKALSGG 134
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311
+R+RV I R LV P V +DEPL +LD+ + M + + +L + + E
Sbjct: 135 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 194
Query: 312 FGLFDRICLLSNGNTLFFGETLACLQH 338
L D+I +L G G+ L +
Sbjct: 195 MTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 9e-23
Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 20/213 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKSEMP--YGSYGF 186
G + ++G + +GKSTL+R + + G V V+G ++SE+ G
Sbjct: 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDGQELTTLSESELTKARRQIGM 86
Query: 187 VERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
+ + L+ S TV + L P + K V + + + L D + Y
Sbjct: 87 IFQHFNLLSSRTVFGNVALPLELDNTPK--DEVKRRVTELLSLVGLGDKHDS------YP 138
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G+++RV IAR L P VL DE LD + ++ LK + + I
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT 198
Query: 306 QSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
V + D + ++SNG + H
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 94.9 bits (236), Expect = 1e-22
Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 25/244 (10%)
Query: 96 AVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA 155
A +I + ++ ++K N G +G + GKSTL+
Sbjct: 7 AQPIEIKQGRIDIDHVSFQYNDNEA---PILKDINLSIEKGETVAFVGMSGGGKSTLINL 63
Query: 156 IAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211
I ++ G++ ++G + + ++ ++ S TV+E +
Sbjct: 64 IPRFYDVTS---GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL------ 114
Query: 212 PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG-----LPCGERRRVRIARELVMRP 266
G V +A + D+ L G+ G L G+++R+ IAR + P
Sbjct: 115 -GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP 173
Query: 267 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326
+L +DE LD S ++ L L+ TL+ S+ D+I ++ NG+
Sbjct: 174 PILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT---HADKIVVIENGHI 230
Query: 327 LFFG 330
+ G
Sbjct: 231 VETG 234
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.4 bits (237), Expect = 1e-22
Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 17/196 (8%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G M I G SGK++LL I G L S G + +G F + + ++
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASE---GIIKHSG--------RVSFCSQFSWIM 109
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
T++E + + + + ++ N ++G L G+R
Sbjct: 110 -PGTIKENIIFGVSYD-EYRYKSVVKACQLQQDITKFAEQDNTVLG--EGGVTLSGGQRA 165
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314
R+ +AR + + +D P +LD + + + T + ++ E
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK--MEHLRK 223
Query: 315 FDRICLLSNGNTLFFG 330
D+I +L G++ F+G
Sbjct: 224 ADKILILHQGSSYFYG 239
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 91.9 bits (228), Expect = 9e-22
Identities = 48/214 (22%), Positives = 85/214 (39%), Gaps = 21/214 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------AKSEMPYGSYG 185
G +++GP+ GK+T LR IAG S ++++
Sbjct: 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRG---QIYIGDKLVADPEKGIFVPPKDRDIA 84
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V + L +TV + + + L+ + V + + L++ N+
Sbjct: 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPR-QEIDQRVREVAELLGLTELLNRKPRE---- 139
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTI 304
L G+R+RV + R +V +P V +DEPL +LD+ + M LKKL G T ++ +
Sbjct: 140 --LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-V 196
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
E + DRI +++ G G
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 91.8 bits (228), Expect = 1e-21
Identities = 49/245 (20%), Positives = 86/245 (35%), Gaps = 21/245 (8%)
Query: 93 EGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL 152
EG V + G + ++++T T G+ +++ N G ++G + SGKST+
Sbjct: 2 EGKRVIDRATGD-LEFRNVTFTYPGREV---PALRNINLKIPAGKTVALVGRSGSGKSTI 57
Query: 153 LRAIAGRLPHSAR--MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210
I + + V + L Y
Sbjct: 58 ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEY 117
Query: 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIARELVMR 265
+ +E+A D+ NK+ G L G+R+R+ IAR L+
Sbjct: 118 -------SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170
Query: 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+L +DE LD+ S + L +L T L ++ ST D I ++ +G
Sbjct: 171 SPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGI 227
Query: 326 TLFFG 330
+ G
Sbjct: 228 IVERG 232
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 89.7 bits (222), Expect = 4e-21
Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 16/218 (7%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
R++ + + + + G VI+GP +GK+ L IAG + + ++G
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG---RILLDGKDV 64
Query: 178 EMPYG---SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY 234
FV + +L + V++ L + + + V D + +
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF----GMRMKKIKDPKRVLDTARDLKIEHL 120
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
++ L GE++RV +AR LV P +L +DEPL LD + L L
Sbjct: 121 LDR------NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ I TE + DRI ++ +G + G+
Sbjct: 175 KKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKP 212
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 87.2 bits (216), Expect = 4e-20
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 13/214 (6%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP 180
S+++++ + A P ++ GP+ GKST+ + +A GE+ ++G +
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNIS 70
Query: 181 YGSY----GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236
++ GFV +++ ++ Y Q ++ ++ D N
Sbjct: 71 LENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296
+G + G+R+R+ IAR + P +L +DE LDS S ++ L L
Sbjct: 131 TEVG--ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK- 187
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
G T L ++ ST V D+I + G G
Sbjct: 188 GRTTLVIAHRLSTIV--DADKIYFIEKGQITGSG 219
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 86.6 bits (214), Expect = 7e-20
Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 17/225 (7%)
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ + ++ ++R + + + + V++GP +GKS L IAG + GEV
Sbjct: 1 MFLKVRAEKRLGNFRLNVD--FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDR---GEV 55
Query: 171 FVNGAKSEMPYGS---YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIH 227
+NGA GFV ++ L L+V A +R V +
Sbjct: 56 RLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN---IAYGLRNVERVERDRRVREMAE 112
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287
+ ++ ++ L GER+RV +AR LV++P +L +DEPL +D + ++M
Sbjct: 113 KLGIAHLLDR------KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM 166
Query: 288 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
L+ + + + E L D + ++ NG + G+
Sbjct: 167 EELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKL 211
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 84.0 bits (207), Expect = 7e-19
Identities = 51/236 (21%), Positives = 97/236 (41%), Gaps = 18/236 (7%)
Query: 113 VTIKG-KRRYSDKVVKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---R 165
+ +K + + V + + + G I+GP+ +GK+T +R IAG S
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 166 MYGEVFVNGAKSEMP--YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVE 223
+ + K +P G V + L +LT E L + + + VE
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFEN-IAFPLTNMKMSKEEIRKRVE 122
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
+ + + N + + L +++RV +AR LV P +L +DEP +LD+
Sbjct: 123 EVAKILDIHHVLN------HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 284 LLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
+K++ G TLL ++ ++F + DR+ +L G + G+ +
Sbjct: 177 DSARALVKEVQSRLGVTLLV-VSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 78.8 bits (194), Expect = 4e-17
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 24/206 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----AKSEMPYGSYGFVER 189
G + I+G + SGKSTL + I +V ++G A G V +
Sbjct: 28 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENG---QVLIDGHDLALADPNWLRRQVGVVLQ 84
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCY 244
+ L+ + ++ + + + V A D+ ++L G
Sbjct: 85 DNVLL-NRSIIDNISLANPGM-------SVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 136
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304
GL G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++
Sbjct: 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIA 195
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFG 330
++ ST DRI ++ G + G
Sbjct: 196 HRLST--VKNADRIIVMEKGKIVEQG 219
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (192), Expect = 7e-17
Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 23/207 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVER 189
PG +T ++GP SGKST+ + + ++ ++G + + V +
Sbjct: 39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGG---QLLLDGKPLPQYEHRYLHRQVAAVGQ 95
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG-- 247
E + +++E + Y + + A + + L G+
Sbjct: 96 EPQVF-GRSLQENIAYGLTQK------PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEA 148
Query: 248 ---LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFT 303
L G+R+ V +AR L+ +P VL +D+ LD+ S L + L + ++L
Sbjct: 149 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLI 208
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFG 330
S D I L G G
Sbjct: 209 TQHLSL--VEQADHILFLEGGAIREGG 233
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 54.2 bits (129), Expect = 3e-09
Identities = 21/185 (11%), Positives = 40/185 (21%), Gaps = 33/185 (17%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199
+I G GK+TL++ I RL A +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRA---IGFWTEE-----------------VRDPETKK 43
Query: 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259
R F + + + + ++ + +
Sbjct: 44 RTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILE----------RAYR 93
Query: 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319
R V+ IDE + + + ++ TI I
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDL-VRQIMHDPNVNVVATIPIRDVHPL--VKEIR 150
Query: 320 LLSNG 324
L
Sbjct: 151 RLPGA 155
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 36.9 bits (84), Expect = 0.002
Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 9/130 (6%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199
++ G + +GKS ++R + LP +G + A + G +E + S+
Sbjct: 7 ILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGP 66
Query: 200 REYLYYSAL---LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH----CYMKGLP--C 250
A + R + + + + + +G ++
Sbjct: 67 EFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVA 126
Query: 251 GERRRVRIAR 260
R R R
Sbjct: 127 EGRETARGDR 136
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.5 bits (83), Expect = 0.003
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161
G + V+ GP+ GKST++R + R+P
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.83 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.62 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.23 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.09 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.86 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.77 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.11 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.04 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.83 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.52 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.34 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.33 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.31 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.3 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.26 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.19 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.15 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.11 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.1 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.05 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.99 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.92 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.9 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.86 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.84 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.8 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.8 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.78 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.77 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.76 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.71 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.71 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.71 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.66 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.63 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.58 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.47 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.45 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.4 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.39 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.37 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.35 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.3 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.28 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.27 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.25 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.24 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.24 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.22 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.2 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.19 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.17 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.14 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.11 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.11 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.09 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.07 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.06 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.06 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.06 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.05 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.04 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.04 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.01 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.99 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.97 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.96 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.94 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.92 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.88 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.86 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.82 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.75 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.7 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.69 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.68 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.64 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.64 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.6 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.48 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.47 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.44 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.44 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.4 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.39 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.36 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.35 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.32 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.32 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.29 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.29 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.27 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.15 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.14 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.04 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.02 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.99 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.97 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.97 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.96 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.91 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.88 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.8 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.8 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.8 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.79 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.78 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.77 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.76 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.76 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.7 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.67 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.66 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.56 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.52 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.45 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.45 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.43 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.37 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.37 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.34 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.32 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.31 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.3 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.27 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.26 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.2 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.19 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.16 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.16 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.14 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.13 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.12 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.09 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.02 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.02 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.01 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.86 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.85 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.84 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.82 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.82 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.78 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.76 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.72 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.69 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.67 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.67 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.61 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.6 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.59 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.58 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.54 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.54 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.51 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.32 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.28 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.26 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.25 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.25 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.25 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.22 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.2 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.2 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.19 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.15 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.1 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.06 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.04 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.97 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.89 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.79 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.7 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.67 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.62 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.6 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.54 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.49 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.37 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.25 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.23 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.2 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.1 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.08 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.07 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.02 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.94 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.73 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.72 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.63 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.58 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.52 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.5 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 90.79 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.37 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.23 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.21 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.1 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.93 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 89.76 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.69 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.63 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.49 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.22 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.93 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.42 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 88.07 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 87.87 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 87.64 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.28 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.99 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.8 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.61 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 86.1 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.25 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.04 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.99 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.77 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 84.52 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.66 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 81.32 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 81.18 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.12 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 80.63 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 80.12 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=8.9e-56 Score=429.99 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=195.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||+++|. ..++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 3 ~i~v~nl~k~yg-----~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~ 74 (240)
T d1g2912 3 GVRLVDVWKVFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (240)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred cEEEEeEEEEEC-----CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhh
Confidence 589999999993 467999999999999999999999999999999999999997 4999999976421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.++.+|||+|++.++|.+||+||+.++..++.. ...+.++++.++++.++|.++.++ +|++||||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~-~~~e~~~~v~~~l~~~~l~~~~~~------~p~~LSGGqkQR 147 (240)
T d1g2912 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV-PRQEIDQRVREVAELLGLTELLNR------KPRELSGGQRQR 147 (240)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTCGGGTTC------CGGGSCHHHHHH
T ss_pred hcccccccceecccchhhcchhhhhHhhhhhHHHcCC-CHHHHHHHHHHHHHHcCChhHhcC------ChhhCCHHHHHH
Confidence 135799999999999999999999998876532 224667889999999999988777 456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..++++|+++.++ |.|||++||+. +++..+||||++|++|++++.|++++
T Consensus 148 v~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~~~e 226 (240)
T d1g2912 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDE 226 (240)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999765 99999988876 68999999999999999999999999
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 227 l~~ 229 (240)
T d1g2912 227 VYD 229 (240)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.4e-56 Score=430.95 Aligned_cols=217 Identities=25% Similarity=0.357 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||+++|. ++++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. ..
T Consensus 6 ~I~v~nlsk~yg-----~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~ 77 (239)
T d1v43a3 6 EVKLENLTKRFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 77 (239)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEEC-----CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCccc
Confidence 489999999993 567999999999999999999999999999999999999997 4999999998642 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.+|||+|++.+||.+||+||+.|++.++.. ...+.+++++++++.++|.+++++ +|++|||||||||+||||
T Consensus 78 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~------~~~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 78 RNISMVFQSYAVWPHMTVYENIAFPLKIKKF-PKDEIDKRVRWAAELLQIEELLNR------YPAQLSGGQRQRVAVARA 150 (239)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CC-CHHHHHHHHHHHHHHTTCGGGTTS------CTTTCCSSCHHHHHHHHH
T ss_pred ceEEEEeechhhcccchHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhcC------ChhhCCHHHHHHHHHHhh
Confidence 5699999999999999999999887544322 224567789999999999988877 456999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+.++.+++++|++++++ |+|||++||+. .++.++||||++|++|++++.|++++++.
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999765 99999988886 68999999999999999999999999864
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-56 Score=430.45 Aligned_cols=216 Identities=28% Similarity=0.398 Sum_probs=159.3
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++||+++|. .+.+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..+
T Consensus 1 Iev~nv~k~yg-----~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r 72 (232)
T d2awna2 1 VQLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAER 72 (232)
T ss_dssp EEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGT
T ss_pred CEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhc
Confidence 58999999993 467999999999999999999999999999999999999997 4999999987532 235
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.+|||+|++.+++.+||+||+.|+..++... .++.++++.++++.++|.++.++.+ ++|||||||||+|||||
T Consensus 73 ~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~-~~~~~~~v~~~l~~~~l~~~~~~~~------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 73 GVGMVFQSYALYPHLSVAENMSFGLKLAGAK-KEVINQRVNQVAEVLQLAHLLDRKP------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp CEEEECSSCCC----------------------CHHHHHHHHHHHHC---------------------------CHHHHH
T ss_pred eeeeeccccccccchhHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCChhhhhCCh------hhCCHHHHHHHHHHHHH
Confidence 7999999999999999999999986654221 2456678999999999999888854 59999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+.+|+||||||||+|||+.++.++++.|+++.+ .|+|||+++|+. +++..+||||++|++|++++.|++++++.
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999999999999975 599999988875 68999999999999999999999999865
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1e-55 Score=429.41 Aligned_cols=219 Identities=24% Similarity=0.321 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (513)
.++++||+++|.. +...+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++..
T Consensus 3 ~i~v~nlsk~y~~---g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~ 76 (242)
T d1oxxk2 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLI 76 (242)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEES
T ss_pred EEEEEeEEEEECC---CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhh
Confidence 4899999999953 2357999999999999999999999999999999999999997 499999998742
Q ss_pred C--CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 179 M--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 179 ~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
. .++.+|||+|++.+||.+||+||+.|++.... ....+.+++++++++.+||.+++++. |++|||||||||
T Consensus 77 ~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~------p~~LSGGqkQRv 149 (242)
T d1oxxk2 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK-MSKEEIRKRVEEVAKILDIHHVLNHF------PRELSGAQQQRV 149 (242)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS-CCHHHHHHHHHHHHHHTTCGGGTTSC------GGGSCHHHHHHH
T ss_pred cchhhccceEEeccccccccccHHHHhhhhhHhhc-CCHHHHHHHHHHHHhhcChHhhhhCC------hhhCCHHHHhHH
Confidence 1 13569999999999999999999998765432 22245678899999999999888774 559999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+|||||+.+|+||||||||+|||+.++.+++++|+++.++ |.|||++||+. .++.++||||++|++|++++.|+++++
T Consensus 150 aiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~el 228 (242)
T d1oxxk2 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDL 228 (242)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999754 99999988876 689999999999999999999999998
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
+.
T Consensus 229 ~~ 230 (242)
T d1oxxk2 229 YD 230 (242)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-55 Score=426.24 Aligned_cols=219 Identities=22% Similarity=0.287 Sum_probs=193.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
|+++||+++|..+. ...++|+||||+|++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++...
T Consensus 2 i~v~nlsk~y~~~~-~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~ 77 (240)
T d3dhwc1 2 IKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESEL 77 (240)
T ss_dssp EEEEEEEEEEECSS-CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHH
T ss_pred EEEEeEEEEeCCCC-eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhh
Confidence 78999999996431 2236899999999999999999999999999999999999997 49999999985321
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
++.+|||||++.+++.+||+||+.+++.+... ...+.++++.++|+.+||.+.+++ +|++|||||||||+
T Consensus 78 ~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~-~~~~~~~~v~~~L~~vgL~~~~~~------~~~~LSGG~~QRva 150 (240)
T d3dhwc1 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDKHDS------YPSNLSGGQKQRVA 150 (240)
T ss_dssp HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTC-CTTHHHHHHHHHHHHHSTTTTTSS------CBSCCCHHHHHHHH
T ss_pred hhhhccccccccccccCCCccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhhC------ChhhCCHHHHHHHH
Confidence 14699999999999999999999998765432 224567889999999999987766 56699999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++.+|+++|++++++ |.|||++||+. .++..+||||++|++|++++.|++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999865 99999988875 6899999999999999999999999864
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.7e-55 Score=421.72 Aligned_cols=212 Identities=24% Similarity=0.326 Sum_probs=190.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---Cc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---YG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---~~ 182 (513)
|+++||+++|. ..+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ++
T Consensus 2 i~v~nlsk~y~------~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r 72 (229)
T d3d31a2 2 IEIESLSRKWK------NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (229)
T ss_dssp EEEEEEEEECS------SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEeC------CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHh
Confidence 78999999983 24899999999999999999999999999999999999997 49999999986432 35
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.+|||+|++.+||.+||+||+.|+..++... ..+++.++++.++|.+++++.+ .+|||||||||+|||||
T Consensus 73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~------~~LSGG~~QRvaiAraL 142 (229)
T d3d31a2 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK----DPKRVLDTARDLKIEHLLDRNP------LTLSGGEQQRVALARAL 142 (229)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCC----CHHHHHHHHHHTTCTTTTTSCG------GGSCHHHHHHHHHHHHT
T ss_pred cceeeccccccCccccHHHHHHHHHhhcccc----HHHHHHHHHHHhcchhhHhCCh------hhCCHHHhcchhhhhhh
Confidence 7999999999999999999999987665322 3457899999999999888754 59999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+.+|+||||||||+|||+.++.+++++|+++++ .|.|||+++|+. .++.++||||++|++|++++.|++++++.
T Consensus 143 ~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred hccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999975 599999988876 68999999999999999999999999863
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.1e-54 Score=414.83 Aligned_cols=215 Identities=28% Similarity=0.333 Sum_probs=186.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++||+++|..+. ....+|+||||++++||++||+||||||||||+++|+|+.+|+ +|+|+++|+++...
T Consensus 2 I~i~nlsk~y~~~~-~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~ 77 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (230)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEeEEEEeCCCC-eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhc
Confidence 78999999996432 2345899999999999999999999999999999999999997 49999999986432
Q ss_pred ----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCC--chhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHH
Q 010314 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPG--FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqr 253 (513)
++.+|||+|++.++|.+||+||+.++..++... ...+..+++.++|+.++|.+ ++++ +|++||||||
T Consensus 78 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~------~p~~LSGGqk 151 (230)
T d1l2ta_ 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH------KPNQLSGGQQ 151 (230)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTC------CGGGSCHHHH
T ss_pred chhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcC------ChhhCCHHHH
Confidence 135999999999999999999999987664322 22455677889999999965 4555 5669999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+|||||+.+|+||||||||+|||+.++..|+++|+++.++ |+|||++||++ +.+ ++||||++|++|++++.|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-HHH-HhCCEEEEEECCEEEEeccC
Confidence 9999999999999999999999999999999999999999865 99999998875 444 79999999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.3e-53 Score=420.21 Aligned_cols=218 Identities=24% Similarity=0.273 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.|+++||+++|. ..++|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~Lev~nl~k~yg-----~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~ 73 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 73 (258)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEEEEEEEEC-----CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccc
Confidence 489999999993 457999999999999999999999999999999999999997 5999999987521
Q ss_pred -------------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCC
Q 010314 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYM 245 (513)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~ 245 (513)
.++.+|||||++.+++.+||.||+.++..........+.++++.++++.++|.+. .++ +|
T Consensus 74 ~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~p 147 (258)
T d1b0ua_ 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK------YP 147 (258)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS------CG
T ss_pred hhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhcc------Cc
Confidence 1246999999999999999999998875433333334567789999999999764 444 45
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
.+|||||||||+|||||+.+|+||||||||+|||+.++.+|+++|++++++|+|||+++|+. .++..+||||++|++|+
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl-~~~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGK 226 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETTE
T ss_pred ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999998899999987775 68999999999999999
Q ss_pred EEEEeChHHHHH
Q 010314 326 TLFFGETLACLQ 337 (513)
Q Consensus 326 iv~~G~~~~~~~ 337 (513)
+++.|++++++.
T Consensus 227 iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 227 IEEEGDPEQVFG 238 (258)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEcCHHHHHh
Confidence 999999999865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.5e-53 Score=414.46 Aligned_cols=218 Identities=22% Similarity=0.279 Sum_probs=189.7
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-- 180 (513)
...|+++||+++|. ++.+|+||||++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 4 d~~Lev~~l~k~yg-----~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~ 75 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPA 75 (240)
T ss_dssp SEEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCH
T ss_pred ceEEEEeeEEEEEC-----CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccH
Confidence 35799999999993 567999999999999999999999999999999999999997 49999999986432
Q ss_pred ----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHc-CChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~-~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
+..++|++|+..+|+.+||+||+.+.+...... ...++.++++++.+ +|.+..++.+ .+||||||||
T Consensus 76 ~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~------~~LSGG~~Qr 147 (240)
T d1ji0a_ 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK--EGIKRDLEWIFSLFPRLKERLKQLG------GTLSGGEQQM 147 (240)
T ss_dssp HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS--SHHHHHHHHHHHHCHHHHTTTTSBS------SSSCHHHHHH
T ss_pred HHHHHhcccccCcccccCCcccHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhhChHHHHhCch------hhCCHHHHHH
Confidence 135899999999999999999998765433322 23445567777776 5777766644 5999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|+||||||||+|||+.++.+++++|++++++|+|||+++|+. .++.++||||++|++|++++.|+++++
T Consensus 148 v~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el 226 (240)
T d1ji0a_ 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999998899999988875 689999999999999999999999987
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 227 ~~ 228 (240)
T d1ji0a_ 227 LD 228 (240)
T ss_dssp HT
T ss_pred hc
Confidence 53
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.7e-53 Score=409.57 Aligned_cols=219 Identities=26% Similarity=0.317 Sum_probs=197.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||+++| +.+++|+||||.+++||++||+||||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 2 aI~v~nl~k~y-----g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~ 73 (238)
T d1vpla_ 2 AVVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEV 73 (238)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHH
T ss_pred CEEEEeEEEEE-----CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHH
Confidence 47899999999 3567999999999999999999999999999999999999997 59999999985432
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
++.++|+||++.+++.+||.||+.|...++... ..+..+.++++++.++|.+..++.++ +|||||||||+|||
T Consensus 74 ~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~------~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS-SSEIEEMVERATEIAGLGEKIKDRVS------TYSKGMVRKLLIAR 146 (238)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHCCGGGGGSBGG------GCCHHHHHHHHHHH
T ss_pred HhhEeEeeeccccCCCccHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHHhhhhh------hCCHHHHHHHHHHH
Confidence 256999999999999999999998877654322 24456778999999999998888665 99999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
||+.+|+||||||||+|||+.++.+++++|++++++|+|||+++|+. +++..+||||++|++|++++.|+++++...+
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 99999999999999999999999999999999998999999988886 6899999999999999999999999987654
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4e-52 Score=409.47 Aligned_cols=218 Identities=20% Similarity=0.233 Sum_probs=191.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.|+++||+++|. +.++|+||||++++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 4 iL~v~nlsk~yg-----~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~ 75 (254)
T d1g6ha_ 4 ILRTENIVKYFG-----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 75 (254)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred eEEEEEEEEEEC-----CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHH
Confidence 589999999993 567999999999999999999999999999999999999997 49999999986432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCC------------CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCC
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLP------------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~------------~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~ 246 (513)
...++|++|++.+++.+||.||+.++...+.. ....+..+++.++++.+++.+..++.++
T Consensus 76 ~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 149 (254)
T d1g6ha_ 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG------ 149 (254)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG------
T ss_pred HHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh------
Confidence 13599999999999999999999875322110 1112344678889999999988887655
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
+|||||||||+|||||+.+|+||||||||+|||+.++.+|+++|++++++|+|||+++|+. +++.++||||++|++|++
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl-~~~~~~~Drv~vm~~G~i 228 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQI 228 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEE
T ss_pred hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999998899999988876 589999999999999999
Q ss_pred EEEeChHHHHH
Q 010314 327 LFFGETLACLQ 337 (513)
Q Consensus 327 v~~G~~~~~~~ 337 (513)
++.|++++...
T Consensus 229 v~~g~~~e~~~ 239 (254)
T d1g6ha_ 229 IAEGRGEEEIK 239 (254)
T ss_dssp EEEEESHHHHH
T ss_pred EEEecHHHHhh
Confidence 99999988654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.8e-51 Score=398.65 Aligned_cols=211 Identities=24% Similarity=0.328 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.+++ ++.+.|. .. -+ ||||++. ||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 2 ~l~v-~~~k~~g-----~~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~ 69 (240)
T d2onka1 2 FLKV-RAEKRLG-----NF-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPER 69 (240)
T ss_dssp CEEE-EEEEEET-----TE-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTT
T ss_pred EEEE-EEEEEEC-----CE-EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHH
Confidence 3455 4556652 22 23 8999995 6899999999999999999999999997 5999999987532 24
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.+|||+|++.+||.+||+||+.|+. +.. ...+.+++++++++.+||.+++++. |++|||||||||+||||
T Consensus 70 r~ig~v~Q~~~l~~~ltV~enl~~~l--~~~-~~~~~~~~v~~~l~~~gl~~~~~~~------~~~LSGG~kQRvaiAra 140 (240)
T d2onka1 70 RGIGFVPQDYALFPHLSVYRNIAYGL--RNV-ERVERDRRVREMAEKLGIAHLLDRK------PARLSGGERQRVALARA 140 (240)
T ss_dssp SCCBCCCSSCCCCTTSCHHHHHHTTC--TTS-CHHHHHHHHHHHHHTTTCTTTTTCC------GGGSCHHHHHHHHHHHH
T ss_pred cCceeeccchhhcccchhhHhhhhhh--ccc-CHHHHHHHHHHHHHhcCcHhhhhCC------hhhCCHHHHHHHHHHHH
Confidence 67999999999999999999998863 211 2245667899999999999888774 45999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+.++..+++.|++++++ |.|||+++|+. .++.++||||++|++|++++.|++++++.
T Consensus 141 l~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 99999999999999999999999999999999765 99999988886 68999999999999999999999999864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.5e-50 Score=389.19 Aligned_cols=215 Identities=25% Similarity=0.358 Sum_probs=181.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++|+||+|+|+. ..+.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 2 I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~l 75 (241)
T d2pmka1 2 ITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWL 75 (241)
T ss_dssp EEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHH
T ss_pred eEEEEEEEEeCC---CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhh
Confidence 789999999953 3456999999999999999999999999999999999999997 49999999986432
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqR 255 (513)
++.++||+|++.+|+ .||+||+.++. +. ...+.+.++++..++.+.......+ ...+..||||||||
T Consensus 76 r~~i~~v~Q~~~lf~-~Ti~eNi~~~~----~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QR 147 (241)
T d2pmka1 76 RRQVGVVLQDNVLLN-RSIIDNISLAN----PG---MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQR 147 (241)
T ss_dssp HHHEEEECSSCCCTT-SBHHHHHCTTS----TT---CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHH
T ss_pred hceEEEEecccccCC-ccccccccccC----cc---ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHH
Confidence 357999999999885 59999996531 11 1234566677777776555443322 23567899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|+++|+.. . ...||+|++|++|++++.|+++++
T Consensus 148 valARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~-~~~~D~i~vl~~G~Iv~~G~~~el 224 (241)
T d2pmka1 148 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS-T-VKNADRIIVMEKGKIVEQGKHKEL 224 (241)
T ss_dssp HHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG-G-GTTSSEEEEEETTEEEEEECHHHH
T ss_pred HhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH-H-HHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999864 899999999873 4 477999999999999999999998
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
+.
T Consensus 225 l~ 226 (241)
T d2pmka1 225 LS 226 (241)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.1e-50 Score=391.60 Aligned_cols=217 Identities=20% Similarity=0.256 Sum_probs=177.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++|+||+|+|+++ ..+.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|+++|+++..
T Consensus 11 ~I~~~nvsf~Y~~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR--PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp CEEEEEEEECCTTS--TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEECCCC--CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHH
Confidence 59999999999643 2456999999999999999999999999999999999999997 4999999998643
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-------HhhhhcCCCCCCCCCHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-------ANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-------~~~~vg~~~~~~~LSGGq 252 (513)
.++.++||+|++.+|+ .||+||+.++.... . ....+.+..+..++.+. .++.++ .++..|||||
T Consensus 86 ~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~--~----~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~--~~~~~LSGGq 156 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFG-RSLQENIAYGLTQK--P----TMEEITAAAVKSGAHSFISGLPQGYDTEVD--EAGSQLSGGQ 156 (251)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHCSCSSC--C----CHHHHHHHHHHHTCHHHHHTSTTGGGCBCC--SSCSSSCHHH
T ss_pred HHHHhhhccccccccC-cchhhhhhhhhccc--c----hHHHHHHHHHHHHHHHHHHhccccchhhHh--ccCccCChhH
Confidence 1357999999999986 59999997642111 1 11222233333333332 333332 3567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||+|||||+.+|+|||||||||+||+.++..|++.|+++.++ |+|+|+++|+. .. .+.||+|++|++|++++.|+
T Consensus 157 kQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l-~~-~~~aDrI~vl~~G~iv~~Gt 234 (251)
T d1jj7a_ 157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL-SL-VEQADHILFLEGGAIREGGT 234 (251)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH-HH-HHTCSEEEEEETTEEEEEEC
T ss_pred ceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH-HH-HHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998754 89999988886 34 46799999999999999999
Q ss_pred hHHHHH
Q 010314 332 TLACLQ 337 (513)
Q Consensus 332 ~~~~~~ 337 (513)
+++++.
T Consensus 235 ~~eLl~ 240 (251)
T d1jj7a_ 235 HQQLME 240 (251)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.4e-50 Score=393.75 Aligned_cols=213 Identities=22% Similarity=0.341 Sum_probs=177.3
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
|+++||+|+|++ .+.+|+||||++++||++||+||||||||||+++|+|+++|++ |+|.++|.++.. .
T Consensus 2 le~knvsf~Y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~~ 74 (242)
T d1mv5a_ 2 LSARHVDFAYDD----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNISLENW 74 (242)
T ss_dssp EEEEEEEECSSS----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEECCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCC---CEEEECCEEeccccHHHH
Confidence 799999999953 3469999999999999999999999999999999999999974 999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-------HhhhhcCCCCCCCCCHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-------ANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-------~~~~vg~~~~~~~LSGGqr 253 (513)
++.++||+|++.+|+. ||+||+.+... .. .....+.++++..++.+. .++.++ ..+..||||||
T Consensus 75 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~g~~LSGGqk 145 (242)
T d1mv5a_ 75 RSQIGFVSQDSAIMAG-TIRENLTYGLE----GD--YTDEDLWQVLDLAFARSFVENMPDQLNTEVG--ERGVKISGGQR 145 (242)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCTT----SC--SCHHHHHHHHHHHTCTTTTTSSTTGGGCEES--TTSBCCCHHHH
T ss_pred HhheEEEccccccCCc-chhhheecccc----cc--cchhhHHHHHHHHHhhhhhccCccccccccc--CCCCCCCHHHH
Confidence 4679999999999976 99999965321 11 123345556666555433 333332 24567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+|||||||||+||+.++..|++.|+++. +|+|||+++|+. ..+ ..||+|++|++|++++.|+++
T Consensus 146 QRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l-~~~-~~~D~i~vl~~G~iv~~G~~~ 222 (242)
T d1mv5a_ 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKHN 222 (242)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCHH
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCH-HHH-HhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999997 589999988886 344 569999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 223 eLl~ 226 (242)
T d1mv5a_ 223 ELVA 226 (242)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5e-49 Score=386.73 Aligned_cols=217 Identities=23% Similarity=0.285 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.|+|+||+|+|+++ ...+|+||||.|++||++||+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 13 ~I~~~nvsf~Y~~~---~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 13 DLEFRNVTFTYPGR---EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLAS 86 (253)
T ss_dssp CEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEEeCCC---CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhh
Confidence 59999999999642 346999999999999999999999999999999999999997 49999999986432
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrq 254 (513)
++.++||+|++.+|. .|+++|+.++. +. ....+.+.++++..++.++.+.+..| ..++..|||||||
T Consensus 87 ~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~--~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQ 159 (253)
T d3b60a1 87 LRNQVALVSQNVHLFN-DTVANNIAYAR----TE--EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ 159 (253)
T ss_dssp HHHTEEEECSSCCCCS-SBHHHHHHTTT----TS--CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHH
T ss_pred hhheEEEEeeccccCC-cchhhhhhhcC----cc--cCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHH
Confidence 246999999999885 49999997642 11 12345677888888887766544322 1356789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|+++|+.. . ...||+|++|++|+|++.|++++
T Consensus 160 RvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~-~~~~D~v~vl~~G~Iv~~G~~~e 236 (253)
T d3b60a1 160 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-T-IEQADEIVVVEDGIIVERGTHSE 236 (253)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-G-TTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999964 889999888863 4 46799999999999999999999
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 237 Ll~ 239 (253)
T d3b60a1 237 LLA 239 (253)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=9.6e-49 Score=384.55 Aligned_cols=217 Identities=22% Similarity=0.296 Sum_probs=184.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||+|+|++. .+.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 15 g~I~~~nvsf~Y~~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 15 GRIDIDHVSFQYNDN---EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CCEEEEEEEECSCSS---SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CEEEEEEEEEEeCCC---CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHH
Confidence 369999999999642 346999999999999999999999999999999999999997 49999999986432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqr 253 (513)
++.++||+|++.+|+ .||+|||.++ .+. ..++.+.++++.+++.++...+..|. ..+..||||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g----~~~---~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~ 160 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFS-DTVKENILLG----RPT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 160 (255)
T ss_dssp HHHHTEEEECSSCCCCS-SBHHHHHGGG----CSS---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred HhhheeeeeeccccCCC-CCHHHHHhcc----CcC---CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHH
Confidence 357999999999885 5999999764 121 23456778899999987665543322 24567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|+++|++. . ...||+|++|++|++++.|+++
T Consensus 161 QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~-~-~~~~D~ii~l~~G~iv~~G~~~ 237 (255)
T d2hyda1 161 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS-T-ITHADKIVVIENGHIVETGTHR 237 (255)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-G-TTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-H-HHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 789999888874 4 4689999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 238 eLl~ 241 (255)
T d2hyda1 238 ELIA 241 (255)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.1e-46 Score=360.38 Aligned_cols=207 Identities=23% Similarity=0.320 Sum_probs=177.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-- 181 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~-- 181 (513)
+.++++|++++ .+|+||||+|++||++||+||||||||||+++|+|+.+ + +|+|.++|++.....
T Consensus 2 ~il~~~dv~~~---------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~---~G~I~~~g~~i~~~~~~ 68 (231)
T d1l7vc_ 2 IVMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-G---KGSIQFAGQPLEAWSAT 68 (231)
T ss_dssp EEEEEEEECCT---------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC-C---SSEEEESSSBGGGSCHH
T ss_pred eEEEEECcccC---------ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-C---ceEEEECCEECCcCCHH
Confidence 46889998643 37999999999999999999999999999999999865 4 499999998753321
Q ss_pred ---ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 182 ---GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 182 ---~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
...+|++|+.......++.+++.+.. .. ....+.++++++.++|.+..++.+ ..|||||||||+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~--~~~~~~~~~~~~~~~l~~~~~~~~------~~LSgG~~Qrv~i 136 (231)
T d1l7vc_ 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQ----HD--KTRTELLNDVAGALALDDKLGRST------NQLSGGEWQRVRL 136 (231)
T ss_dssp HHHHHEEEECSCCCCCSSCBHHHHHHHHC----SC--TTCHHHHHHHHHHTTCTTTTTSBG------GGCCHHHHHHHHH
T ss_pred HHHhhceeeeccccCCccccHHHHhhhcc----ch--hhHHHHHHHHHHhcCCHhHhCcCh------hhcCHHHHHHHHH
Confidence 24789999877666789999986532 11 234567889999999998887755 4999999999999
Q ss_pred HHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 259 ARELVM-------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 259 AraL~~-------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||+. +|+||||||||+|||+.++..++++|++++++|+|||+++|+. +++.++|||+++|++|++++.|+
T Consensus 137 A~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl-~~~~~~~dri~vl~~G~iv~~G~ 215 (231)
T d1l7vc_ 137 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGR 215 (231)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCH-HHHHHHCSBCCBEETTEECCCSB
T ss_pred HHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEECC
Confidence 999997 7799999999999999999999999999998999999988775 68999999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
+++++
T Consensus 216 ~~ev~ 220 (231)
T d1l7vc_ 216 REEVL 220 (231)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 99874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.6e-44 Score=343.13 Aligned_cols=196 Identities=23% Similarity=0.305 Sum_probs=167.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.|+++||++.|. +++|+||||++++||++||+||||||||||+++|+|+++|+ +|+|.++|++.......+
T Consensus 2 ~lev~~ls~~y~------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGKI 72 (200)
T ss_dssp EEEEEEEEEESS------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGGGE
T ss_pred eEEEEEEEEEeC------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHhcCcE
Confidence 489999999883 46999999999999999999999999999999999999997 499999999876555679
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
+|++|+..++..+|++|++.+...+.... ..++.+.+.++.+++.++. +.+ .+|||||||||+|||||+.
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~------~~LSgG~~qrv~ia~al~~ 142 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVK---VNKNEIMDALESVEVLDLK-KKL------GELSQGTIRRVQLASTLLV 142 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCC---CCHHHHHHHHHHTTCCCTT-SBG------GGSCHHHHHHHHHHHHTTS
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCc---cCHHHHHHHHHHcCCcccc-ccc------CcCCCcHHHHHHHHHHHhc
Confidence 99999999999999999998876654322 2234577788888876543 333 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
+|+||||||||+|||+.++..+++.|+++.+++.++|+++||.. .+||++.+|++
T Consensus 143 ~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 143 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999999999876556666667653 57999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.4e-44 Score=358.46 Aligned_cols=194 Identities=22% Similarity=0.279 Sum_probs=158.2
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
++++|+||||.|++||++||+||||||||||+++|+|+++|+ +|+|.++|+ ++|++|++.+++. ||+|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~--------i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------VSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCSC--------EEEECSSCCCCSE-EHHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECCE--------EEEEeccccccCc-eeec
Confidence 467999999999999999999999999999999999999997 499999883 8999999999875 9999
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
|+.++. .. ......++++..++.........+ ...+..|||||||||+|||||+.+|+||||||||+
T Consensus 116 ni~~~~----~~----~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 116 NIIFGV----SY----DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp HHTTTS----CC----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred cccccc----cc----cchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccc
Confidence 997642 11 122344555555554333222211 12345799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+||+.++..+++.+......++|+|+++|+. +....||||++|++|++++.|+++++..
T Consensus 188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999986544344688999988875 3457899999999999999999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.62 E-value=3.3e-18 Score=155.53 Aligned_cols=153 Identities=15% Similarity=0.085 Sum_probs=98.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcC-----CcccCCCCCHHHHHHHHHHhcCCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVER-----ETTLIGSLTVREYLYYSALLQLPG 213 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q-----~~~l~~~lTV~E~l~~~~~~~~~~ 213 (513)
++|+||||||||||+++|+|.+++. .|.+.+.+........+.++... ...+. ..+.. ...
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~ 68 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS-SKFFT----------SKK 68 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEE-ETTCC----------CSS
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCC---cceEEECCcchHHHHHhhhhhhhhhhHHHHHHh-hhhhh----------hhh
Confidence 7899999999999999999999886 48998877543221112222111 11100 00000 000
Q ss_pred chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010314 214 FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (513)
Q Consensus 214 ~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l 293 (513)
. .. ..+.. . ....+|+|+++|.++++++..+|++|++|||.... .....+...|.++
T Consensus 69 ~-~~----------~~~~~--~--------~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~ 125 (178)
T d1ye8a1 69 L-VG----------SYGVN--V--------QYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQI 125 (178)
T ss_dssp E-ET----------TEEEC--H--------HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHH
T ss_pred h-hh----------hhhcC--c--------chhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHH
Confidence 0 00 00000 0 01157899999999999999999999999985443 3445666677666
Q ss_pred HH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 294 AS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 294 ~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
.+ .+.++|+++|+. ....++|++..+.+|+++.-+
T Consensus 126 l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 126 MHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp HTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECC
T ss_pred hccCCCEEEEEEccH--HHHHhhceEEEEeCCEEEEEC
Confidence 54 478888877765 456789999999999998654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=1e-09 Score=107.20 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEE
Q 010314 245 MKGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 320 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL----~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v 320 (513)
...+|+|||+.+.++..+ ...|.++++|||-++|+|..+..+.+.|+++.+ +.-||+|||.| .+.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH--HHHHhcccEEE
Confidence 357999999998887764 346789999999999999999999999999864 56788989987 46788999866
Q ss_pred --EeCC
Q 010314 321 --LSNG 324 (513)
Q Consensus 321 --L~~G 324 (513)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4556
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=5.3e-09 Score=105.84 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 246 KGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL----~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
..||||||.+++||..| +.++++++||||+++||+..+..+.++|+++...+.-+|++||+| .+...+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 56899999998887554 356779999999999999999999999999865566688888886 688999998755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.11 E-value=5.9e-06 Score=77.26 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=37.0
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCeEEEEEeCChHHHHhc
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (513)
+.+..++|+||+..|=|+.....+... ++.|.+.+..++++||+. ++..+
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 345679999999999999877665544 455666788888888875 45554
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=1.4e-05 Score=74.99 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=33.5
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHc-CCeEEEEEeCC
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLAST-GCTLLFTINQS 307 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~-~L~~l~~~-g~tvi~t~h~~ 307 (513)
+.+..++|+||+.+|=++.....+.. .++.+... +..+|++||+.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 34457999999999999999888755 46677655 45677766654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.83 E-value=0.00021 Score=67.48 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=26.8
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
-|+++.+=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3444433467999999999999999999887764
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.34 E-value=8e-05 Score=64.85 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.|++++|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998753
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.0014 Score=61.43 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=32.8
Q ss_pred HHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHc-CCeEEEEEe
Q 010314 261 ELVMRPHVLFIDEPLY-----HLDSVSALLMMVTLKKLAST-GCTLLFTIN 305 (513)
Q Consensus 261 aL~~~P~iLllDEPTs-----gLD~~~~~~i~~~L~~l~~~-g~tvi~t~h 305 (513)
....+|+++++|--++ --|......+++.|+.++.. +++||++.|
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H 178 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHH 178 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhh
Confidence 3457999999995432 12666777888888888754 888888544
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=4.5e-05 Score=67.97 Aligned_cols=26 Identities=42% Similarity=0.852 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
|.++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999988765
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=5.1e-06 Score=73.72 Aligned_cols=35 Identities=23% Similarity=0.080 Sum_probs=29.1
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 456777777776 99999999999999999997543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=5.3e-05 Score=65.66 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+++|+|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999876543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.19 E-value=0.00089 Score=61.45 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=39.6
Q ss_pred hCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHH-HcCCeEEEEEeCC---------hHHHHhcCCEEEEEe
Q 010314 264 MRPHVLFIDEPLY---HLDSVSALLMMVTLKKLA-STGCTLLFTINQS---------STEVFGLFDRICLLS 322 (513)
Q Consensus 264 ~~P~iLllDEPTs---gLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~---------~~~i~~~~D~v~vL~ 322 (513)
.+|++++.|--+. +.+......++..|.+++ +.+.+++++.|.. ...+..++|-++.|+
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4799999996443 446666566666666655 4588888877642 123556799998885
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.15 E-value=0.00011 Score=68.24 Aligned_cols=34 Identities=35% Similarity=0.445 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~ 171 (513)
+|+.++++|+||+|||||+|.|.|...-. +|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 68999999999999999999998864332 37765
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.00012 Score=63.60 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+.++.|+|++||||||+.+.|+..+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999999999865
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.10 E-value=0.00012 Score=63.55 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999765
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.05 E-value=9.6e-05 Score=64.60 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~ 173 (513)
+++|+|++|||||||++.|...+...+..-|.|..+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d 38 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 38 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 789999999999999998887765433223444433
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.99 E-value=0.0052 Score=55.13 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=37.6
Q ss_pred hCCCEEEEeCCCCCC----CHHHHH-HHHHHHHHHHHcCCeEEEEEeCChH--------HHHhcCCEEEEEe
Q 010314 264 MRPHVLFIDEPLYHL----DSVSAL-LMMVTLKKLASTGCTLLFTINQSST--------EVFGLFDRICLLS 322 (513)
Q Consensus 264 ~~P~iLllDEPTsgL----D~~~~~-~i~~~L~~l~~~g~tvi~t~h~~~~--------~i~~~~D~v~vL~ 322 (513)
.+|+++++|--+.-+ +..... .+...++.+++.+.|++++.|+... ....++|-++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999765532 333333 3444444445669999998886532 3445688888774
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.92 E-value=0.0017 Score=60.79 Aligned_cols=22 Identities=41% Similarity=0.770 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.+.||+|+|||+|.++|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 7899999999999999999854
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.90 E-value=0.0002 Score=62.28 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+||+|||||||.+.|+..+
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.86 E-value=0.00028 Score=61.19 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+|-.++|+||+||||||+.+.|+-.+
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999999764
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.84 E-value=0.00025 Score=61.36 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45889999999999999999999875
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.80 E-value=0.00031 Score=59.73 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G 158 (513)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00032 Score=64.05 Aligned_cols=27 Identities=33% Similarity=0.671 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.|.++.|+||||+|||||++.|.-..|
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999987655
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00025 Score=61.51 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
.+.|.||+|+|||||++.++..+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47899999999999999999887554
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.77 E-value=0.00037 Score=69.11 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=22.9
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIA 157 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~ 157 (513)
+.+.++.+++|+|||||||||+|.+|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 344556699999999999999999985
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.76 E-value=0.00013 Score=68.06 Aligned_cols=34 Identities=35% Similarity=0.411 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~ 171 (513)
+|..++++|+||+|||||+|.|.|-..-. +|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 68899999999999999999999864322 37775
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.71 E-value=0.00038 Score=59.78 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++.|.||+||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999765
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00036 Score=59.16 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999999765
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.71 E-value=0.00035 Score=60.24 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998643
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.66 E-value=0.0004 Score=61.26 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
++||-|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986644
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.00028 Score=62.32 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998754
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.58 E-value=0.00057 Score=59.38 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.+++|.|++||||||+.+.|+-.+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999876543
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.47 E-value=0.00059 Score=60.82 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999963
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.45 E-value=0.00072 Score=60.18 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+..+++|+||+||||||+.+.|+-.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999863
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.40 E-value=0.00073 Score=60.21 Aligned_cols=23 Identities=48% Similarity=0.795 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
++|+||||||||||++.|+-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999987654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.001 Score=58.74 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=25.5
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+=+.+|+++.|.||+|+|||||+.-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998877754
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.37 E-value=0.0052 Score=57.82 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+..-+.|.||+|+|||+|.++|++..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34447899999999999999999975
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.00082 Score=59.72 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
..+.|+||||+|||||++.|....|
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 4689999999999999999986543
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.30 E-value=0.00092 Score=61.08 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.28 E-value=0.0011 Score=57.74 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.27 E-value=0.00095 Score=59.71 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+||||||||||++.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999997654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.25 E-value=0.00063 Score=60.02 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
+||+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.0011 Score=59.18 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-.++.|+||+||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.24 E-value=0.00089 Score=58.61 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999963
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0011 Score=59.93 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
++||-|++|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987653
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.20 E-value=0.0011 Score=57.50 Aligned_cols=22 Identities=55% Similarity=0.632 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998764
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.19 E-value=0.00093 Score=59.62 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+.+.++.|+||+||||||+.+.|+-.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0013 Score=57.32 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.0012 Score=58.86 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|||||||++.|.|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.11 E-value=0.0014 Score=60.71 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
...+.|.||+|||||||.+.|++.+..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 345889999999999999999997643
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.11 E-value=0.0016 Score=57.71 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+|--+.|+||+||||||+.+.|+-.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH
Confidence 5667889999999999999999953
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.0013 Score=55.57 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+-.
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999999853
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.07 E-value=0.0013 Score=55.60 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.|++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999864
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.06 E-value=0.0014 Score=57.09 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|+|++||||||+.+.|+-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998653
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.06 E-value=0.00097 Score=57.84 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|||||||++.|.|-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.06 E-value=0.0016 Score=57.09 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+++|+|.+|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.05 E-value=0.0014 Score=57.45 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-+||+|.+|+|||||++.|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999985
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.04 E-value=0.0016 Score=57.78 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++.|+||+||||||..+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999864
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.04 E-value=0.0013 Score=58.23 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+.|+||+||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999854
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.01 E-value=0.0015 Score=55.68 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|.+|+|||||++.+.+-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998864
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.99 E-value=0.0016 Score=56.50 Aligned_cols=22 Identities=45% Similarity=0.585 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|+|++||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999765
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.97 E-value=0.0016 Score=56.83 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998643
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0018 Score=55.29 Aligned_cols=23 Identities=52% Similarity=0.741 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|+|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999874
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.94 E-value=0.0011 Score=58.12 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+||+|.+|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998853
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.92 E-value=0.0019 Score=58.40 Aligned_cols=23 Identities=48% Similarity=0.615 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|.||+||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999754
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.88 E-value=0.0021 Score=56.60 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
.-+++.++|++||||||+.+-++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998853
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.86 E-value=0.002 Score=56.05 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
++.|.|++||||||+.+.|+..+..
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6788999999999999999987653
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.82 E-value=0.0022 Score=56.96 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.0024 Score=57.24 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|.||+||||||+.+.|+-.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999764
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.70 E-value=0.18 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
...+++|.|..|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.69 E-value=0.0027 Score=55.78 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+.|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999653
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0012 Score=57.41 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|.+++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998853
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.64 E-value=0.0027 Score=55.62 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998643
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.64 E-value=0.0016 Score=63.49 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=28.0
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
..++.|.-+.|.|+.||||||||++|++.+++.
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 334556668999999999999999999998875
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.60 E-value=0.0026 Score=54.63 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.|-.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999998853
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.48 E-value=0.0032 Score=55.67 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 010314 138 MTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G 158 (513)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0033 Score=54.90 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
+.|+||+||||||..+.|+-.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999854
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.0037 Score=56.50 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=24.5
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
+=+++|+++.|.||+|||||||.--++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3477999999999999999999987764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.44 E-value=0.0026 Score=56.32 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.-+++|-|+.|||||||++.|+..+
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998765
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.40 E-value=0.056 Score=50.65 Aligned_cols=29 Identities=41% Similarity=0.570 Sum_probs=25.7
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+=++.|.++-|-||+|||||||+-.++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHH
Confidence 56779999999999999999998877765
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.39 E-value=0.0037 Score=55.65 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+||+||||||+.+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999964
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.36 E-value=0.0035 Score=56.05 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999875
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.35 E-value=0.0011 Score=56.58 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++.|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.32 E-value=0.0038 Score=53.89 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999985
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.32 E-value=0.0041 Score=54.57 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
+.|+||.||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999864
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.29 E-value=0.004 Score=54.69 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
+||+|...||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999975
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.29 E-value=0.0037 Score=58.56 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999974
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.27 E-value=0.0049 Score=55.91 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
+|-++-|.|.||||||||.+.|.-.+.... ..-.+.++|..
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~ 63 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDN 63 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchH
Confidence 788999999999999999999975432110 01346666644
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.15 E-value=0.0046 Score=53.11 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.14 E-value=0.0056 Score=56.16 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
..+.|.||+|+||||++++|+..+
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999864
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.04 E-value=0.0048 Score=59.36 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
|+.-+.+.||+|||||+|.|+|+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 33456689999999999999999864
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.0061 Score=55.18 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
++|-+++|-|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3788999999999999999999887653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.99 E-value=0.0055 Score=55.88 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+.+.||+|+|||||.++|+..+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 367999999999999999997654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.97 E-value=0.0057 Score=55.57 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|.||+|+|||||+++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6799999999999999998754
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.004 Score=56.59 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+.+++|-|+-||||||+++.|+..+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999998764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.96 E-value=0.0062 Score=55.84 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+.++.|.||+|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 46789999999999999999887543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.91 E-value=0.0073 Score=54.37 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.4
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
+=+++|+++.|.|++|+|||||+--++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4478999999999999999999777654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.88 E-value=0.0074 Score=54.94 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHH
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIA 157 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~ 157 (513)
=+++|+++.|.||+|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 47799999999999999999976443
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.0052 Score=59.80 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
..-.+||.||+|||||||++.|...+
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 35579999999999999999998654
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.0075 Score=54.77 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=24.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
=+++|.++.|.|++|||||||.-.++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999999887764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.80 E-value=0.0064 Score=55.56 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.+.||+|+|||||.++|++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999864
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.0066 Score=58.52 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~ 195 (513)
++||-|++||||||+.+.|..++.... ....+..+.+|+.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~---------------~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP---------------EHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST---------------TCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc---------------CCCceEEEeeeeeECC
Confidence 799999999999999999988764210 0123566777776664
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.0068 Score=52.39 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.77 E-value=0.0079 Score=53.94 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+|.+++|-|+-||||||+++.|+-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987653
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.76 E-value=0.0072 Score=54.26 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 010314 138 MTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G 158 (513)
++||.|+.||||||+.+.|.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.76 E-value=0.0069 Score=52.31 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++++|.+|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988754
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.0067 Score=52.15 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.67 E-value=0.0062 Score=52.64 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.|.+-
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.66 E-value=0.007 Score=60.41 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+||+|.+|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.56 E-value=0.0082 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|.||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999753
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.0084 Score=52.03 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987664
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.45 E-value=0.009 Score=51.19 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 010314 139 TVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G 158 (513)
++|+|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987774
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.45 E-value=0.0049 Score=58.86 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
++||.|+|||||||+.+.|..++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999887654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.43 E-value=0.013 Score=53.13 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999999999977654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.37 E-value=0.021 Score=50.35 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=24.3
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
++..-..+ .|.-+.|.|+||+|||||.-.|.-
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34333333 778899999999999999987764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.0089 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999998753
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.34 E-value=0.01 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++||+|...||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.011 Score=50.86 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++-+.+-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988763
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.31 E-value=0.0095 Score=55.35 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-+.|.||+|||||+|.++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47799999999999999999753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.011 Score=51.67 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.27 E-value=0.013 Score=53.14 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+.+++++||+|+||||.+==|+-..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999865566544
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.0097 Score=51.00 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++++|.+|+|||||++.+++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.013 Score=54.72 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
..-+.|.||+|||||+|.++|+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc
Confidence 3457799999999999999999764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.01 Score=51.15 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.011 Score=51.09 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 689999999999999987654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.16 E-value=0.014 Score=53.35 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
...+.|.||+|+||||+++.|+..++.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999987654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.14 E-value=0.013 Score=52.68 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++||.|..||||||..++|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999998753
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.13 E-value=0.012 Score=56.98 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.-.++|.|+.|||||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.12 E-value=0.013 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998864
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.011 Score=50.98 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.015 Score=50.16 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 010314 139 TVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G 158 (513)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.013 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++-+.+-
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.01 E-value=0.013 Score=51.22 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++.+.+-
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.86 E-value=0.014 Score=50.01 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.85 E-value=0.014 Score=52.66 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|-||+|+||||++++|+..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 5789999999999999998643
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.013 Score=49.94 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|..|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.019 Score=49.58 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998864
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.82 E-value=0.015 Score=49.60 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|..|+|||||++-+.+-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.78 E-value=0.0087 Score=52.15 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 010314 138 MTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G 158 (513)
-++|+|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 377999999999999998754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.76 E-value=0.026 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.|.-++|.|+||+|||||.-.|...
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 6778999999999999998877653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.72 E-value=0.0079 Score=58.07 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.-+.|+||.|+|||||++.|++++|+
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 34789999999999999999999976
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.69 E-value=0.016 Score=49.68 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++-+..-
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.016 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.67 E-value=0.017 Score=54.90 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877544
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.017 Score=49.54 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++.+.+-
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987753
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.60 E-value=0.017 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+..+++++||+|+||||.+-=|+-.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999976555544
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.59 E-value=0.015 Score=51.34 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.015 Score=50.29 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++.+.+-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999888764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.54 E-value=0.02 Score=51.86 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
...+++++||+|+||||.+-=|+-.+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999998777775543
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.54 E-value=0.022 Score=49.26 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|.+++|-|+=|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 3589999999999999999999988654
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.51 E-value=0.019 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999997654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.32 E-value=0.018 Score=49.61 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|..|+|||||++.+.+-
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.02 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|.+|+|||||++.+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999887764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.26 E-value=0.022 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|.||+|+|||+|.++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7899999999999999999864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.019 Score=49.59 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++-+.+-
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.25 E-value=0.013 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-+.|+|++|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3779999999999999998754
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.25 E-value=0.02 Score=49.05 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++-+.+-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999977654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.021 Score=49.04 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998864
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.20 E-value=0.013 Score=50.65 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=8.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|..|+|||||++.+++-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977763
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.20 E-value=0.018 Score=52.51 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=27.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
+.+++++||.-. |....+..+.+.+.... ....+|+++++.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~ 171 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSM 171 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCS
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeeccc
Confidence 567999999864 77777777666665432 234567777665
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.19 E-value=0.021 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|-||+|+|||||+++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999998743
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.15 E-value=0.021 Score=51.75 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
-.+++++||+|+||||.+-=|+-.+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999997766665543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.022 Score=48.88 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++-+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988854
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.06 E-value=0.037 Score=48.35 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=22.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.-.|.-+.|.|+||+|||||.-.|.-.
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 346888999999999999998776653
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.04 E-value=0.015 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35567999999999999999765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.97 E-value=0.024 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++.+.+-
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999987763
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.025 Score=48.56 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 010314 139 TVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G 158 (513)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999997654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.015 Score=50.17 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+++-
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877553
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.70 E-value=0.027 Score=48.35 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 010314 139 TVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G 158 (513)
++|+|..|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.67 E-value=0.027 Score=51.04 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=16.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
...+++++||+|+||||.+==|+-..
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999865566443
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.62 E-value=0.037 Score=51.78 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=24.8
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+=+++|.++-|.||+|||||||+-.++.-
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 56779999999999999999997666654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.60 E-value=0.022 Score=57.44 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+.++||+|||||-|.+.|++++.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999763
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.029 Score=48.79 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++++|.+|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999977664
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.49 E-value=0.03 Score=48.91 Aligned_cols=19 Identities=37% Similarity=0.746 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 010314 139 TVIMGPAKSGKSTLLRAIA 157 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~ 157 (513)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999884
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.03 Score=48.93 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 010314 139 TVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G 158 (513)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999988765
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.25 E-value=0.035 Score=52.63 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-+-.|+-.+|+|++|+|||||+..|+.-
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 3448999999999999999999998863
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.034 Score=47.47 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.20 E-value=0.038 Score=53.00 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
|...+.++||+|+|||.|.+.|+-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44467899999999999999999864
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.031 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-+++|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999964
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.08 E-value=0.039 Score=54.79 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=36.6
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEE
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (513)
|..+|=.+|+||+..|.. |+.++...+ +.+..|..|+.|.|-.+ +....+|+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhhh
Confidence 445666799999999987 666665544 44668999999888753 34445553
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.07 E-value=0.045 Score=48.25 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.02 E-value=0.035 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+||+|-+-+|||||+++|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.94 E-value=0.035 Score=48.64 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|.+|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.73 E-value=0.042 Score=49.57 Aligned_cols=19 Identities=32% Similarity=0.709 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 010314 139 TVIMGPAKSGKSTLLRAIA 157 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~ 157 (513)
+.|+|.+|+|||||++-+.
T Consensus 9 illlG~~~vGKTsll~~~~ 27 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.72 E-value=0.041 Score=47.81 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 010314 139 TVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G 158 (513)
++|+|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999976654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.63 E-value=0.039 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999974
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.58 E-value=0.042 Score=51.96 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.-+||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.52 E-value=0.05 Score=49.27 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 010314 138 MTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G 158 (513)
++||.|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999965
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.50 E-value=0.039 Score=52.26 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-+||+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999975
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=90.79 E-value=0.058 Score=52.79 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=25.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+++.++.+.||+|+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5678999999999999999999999753
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.37 E-value=0.062 Score=50.31 Aligned_cols=20 Identities=40% Similarity=0.508 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 010314 139 TVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G 158 (513)
+||+|..|+|||||...|..
T Consensus 5 v~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHH
Confidence 79999999999999999953
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.23 E-value=0.08 Score=49.60 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=23.3
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
+=++.|.++-|.||+|+|||||+-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHH
Confidence 3566899999999999999999755554
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.21 E-value=0.069 Score=51.36 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.-++.+.||+|+|||.|.+.|++..
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHh
Confidence 33356678999999999999999864
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.10 E-value=0.071 Score=47.61 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 010314 139 TVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G 158 (513)
+||+|.-++|||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.93 E-value=0.075 Score=45.93 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
+.|+|..|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999988654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.76 E-value=0.085 Score=45.34 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
++|+|..|+|||||++-+..-.-|+
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t 29 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAG 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCC
Confidence 6899999999999999886543343
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.69 E-value=0.085 Score=47.51 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.+++|=|+=||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 47899999999999999999976543
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.63 E-value=0.08 Score=49.49 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-+||+|-+-+|||||+++|++--
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999764
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.49 E-value=0.074 Score=48.16 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++.|.|.=|||||||++-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999998864
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.22 E-value=0.088 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHH---HcCCCC
Q 010314 139 TVIMGPAKSGKSTLLRAI---AGRLPH 162 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L---~G~~~~ 162 (513)
+||+|..|||||||...| +|....
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 799999999999999998 455443
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.93 E-value=0.1 Score=46.89 Aligned_cols=48 Identities=6% Similarity=0.135 Sum_probs=37.7
Q ss_pred hhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHH
Q 010314 263 VMRPHVLFIDEPLYH-LDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (513)
Q Consensus 263 ~~~P~iLllDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (513)
+...++|++|+-=.= =+...+..+..++..+.+.|+.+|+++..+..+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~ 143 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK 143 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchh
Confidence 456899999987432 247788889999999988899999988876543
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.42 E-value=0.14 Score=47.91 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=23.6
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
+.+-+|+..+|+|++|+|||||+..++-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 3455899999999999999999777753
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=88.07 E-value=0.11 Score=51.07 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=17.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 010314 137 TMTVIMGPAKSGKSTLLRAIA 157 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~ 157 (513)
..+.|+|++|||||++++.|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 458999999999999987543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.87 E-value=0.14 Score=45.66 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+.+.||+|+||||+.++++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 47899999999999999998754
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.64 E-value=0.14 Score=46.45 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=26.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
.+|+|+||.=. |+...+..+++.|.+.. .+..+|++++++.
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~ 156 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQ 156 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGG
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCC-CCeEEEEEcCCcc
Confidence 46999999854 77777776666665322 2456666666654
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.28 E-value=0.14 Score=48.83 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHh
Confidence 44467899999999999999999865
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.99 E-value=0.15 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++- +.++||+|+|||-|.|.|+-..
T Consensus 68 ~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 68 KSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred Ccc-eeeeCCCCccHHHHHHHHHhhc
Confidence 443 5678999999999999999875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.80 E-value=0.17 Score=47.29 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
-..|+||+|+|||+++.-|+.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999997653
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.61 E-value=0.25 Score=43.56 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
|.=-+||+|.=.+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 333489999999999999999998654
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.10 E-value=0.2 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
..|+||+|.|||++..-|+-++.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHHH
Confidence 67999999999999999997653
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=85.25 E-value=0.22 Score=44.09 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
+||+|.-.+|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999874
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.04 E-value=0.16 Score=47.43 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=13.4
Q ss_pred EEEEEcCCCCcHHHHH
Q 010314 138 MTVIMGPAKSGKSTLL 153 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl 153 (513)
.+.|.|+.||||||.|
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3678999999999765
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=84.99 E-value=0.2 Score=47.66 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q 010314 135 PGTMTVIMGPAKSGKSTLL 153 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl 153 (513)
.|++..+.|-||+|||||-
T Consensus 13 ~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 13 KGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6899999999999999964
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=84.77 E-value=0.2 Score=47.84 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q 010314 135 PGTMTVIMGPAKSGKSTLL 153 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl 153 (513)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5889999999999999964
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=84.52 E-value=0.19 Score=46.35 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.3
Q ss_pred EEEEEcCCCCcHHHHH
Q 010314 138 MTVIMGPAKSGKSTLL 153 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl 153 (513)
-+.|+|+.||||||.|
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3679999999999754
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.66 E-value=0.29 Score=46.64 Aligned_cols=19 Identities=42% Similarity=0.667 Sum_probs=17.6
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q 010314 135 PGTMTVIMGPAKSGKSTLL 153 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl 153 (513)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6889999999999999986
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.32 E-value=0.26 Score=46.32 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.6
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIA 157 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~ 157 (513)
+.+-+|+..+|+|++|+|||||+.-++
T Consensus 63 ~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 63 VPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cCccCCCEEEeecCCCCChHHHHHHHH
Confidence 345589999999999999999976554
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=81.18 E-value=0.22 Score=46.58 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=23.5
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+.+-+|+..+|+|++|+|||+|+..+.-.
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred ccccCCceEeeccCCCCChHHHHHHHHhh
Confidence 34558999999999999999998765433
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.12 E-value=0.38 Score=43.09 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 010314 139 TVIMGPAKSGKSTLLRAIA 157 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~ 157 (513)
++|+|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7999999999999999884
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=80.63 E-value=0.46 Score=45.53 Aligned_cols=25 Identities=28% Similarity=0.165 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.+.|=|+=|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCccCCHHHHHHHHHHHhcc
Confidence 3678899999999999999987654
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=80.12 E-value=0.46 Score=45.94 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCCcHHHHHH
Q 010314 135 PGTMTVIMGPAKSGKSTLLR 154 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~ 154 (513)
.+.++.|.||.|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 35689999999999999874
|