Citrus Sinensis ID: 010320

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
Protein Sequence
MKRVWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEcHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEcc
Coil and Loop (DISEMBL)
MKRVWKLSDAAQTELLLQRLQrhsskpktlpplsvftltkspnhsftrdlcapathtvFPTLVRLLSEtltypdarvrKDLTQTVSALRDELLANVDDLDKVFRVLDEKgsclfrrhsnGYAFVELMKQLGSRPRLALEVLNWRrrqagygtpmtkeeytKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKkeanispsivTYNTLISVFGRLLLVDHMEAAFQeikdsnlspnvftYNYLIAGYMTAWMWGKVEEIYQMMkagpvmpdtnTYLLLLRGyahsgnlprMEKIYELVKhhvdgkefPLIRAMICAYSKCSVTDRIKKIEALMRLipekeyrpWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMckngydvpvnafps
Flexible Loop (DISEMBL)
mkrvwklsDAAQTELLLQRlqrhsskpktlpplsVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSEtltypdarvrkDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWrrrqagygtpmtkeeytKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEanispsivtYNTLISVFGRLLLVDHMEAAFqeikdsnlspnVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMrlipekeyrpwlnVLLIRVYAKEDCLEEMEKSIndafehktsvttVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEnykidcskkTFWIMYYAYATCGQRRKVNQVLGLMCKngydvpvnafps
Low Complexity Region (SEG)
MKRVWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS
Disordered region (IsUnstruct)
**********************************VFTLTK*PNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV*****
Disordered Region (DISOPRED)
*********A****LLLQRLQRHSS*PKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS
Disordered Region (DISEMBL)
MKRVWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS
Disordered Region (DISPRO)
***VWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRVWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	513	2.2.26 [Sep-21-2011]
O49343	452	Pentatricopeptide repeat-	yes	no	0.826	0.938	0.558	1e-138
Q9ZU88	481	Pentatricopeptide repeat-	no	no	0.896	0.956	0.472	1e-117
Q9FKC3	508	Pentatricopeptide repeat-	no	no	0.838	0.846	0.244	3e-21
Q9SQU6	486	Pentatricopeptide repeat-	no	no	0.723	0.763	0.235	8e-18
Q9SV96	563	Pentatricopeptide repeat-	no	no	0.754	0.687	0.218	3e-17
Q9LYZ9	819	Pentatricopeptide repeat-	no	no	0.697	0.437	0.208	1e-16
Q9SCP4	447	Pentatricopeptide repeat-	no	no	0.715	0.821	0.241	9e-16
O22714	491	Pentatricopeptide repeat-	no	no	0.477	0.498	0.262	4e-14
Q9S7Q2	862	Pentatricopeptide repeat-	no	no	0.754	0.448	0.213	2e-13
Q9LW84	642	Pentatricopeptide repeat-	no	no	0.660	0.528	0.208	2e-13

>sp|O49343|PP177_ARATH Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana GN=At2g30780 PE=2 SV=1

 Score =  491 bits (1263), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/424 (55%), Positives = 302/424 (71%)

Query: 80  DLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE 139
           DL Q VS L+DELL   +  +K   VLD+KG  LFR + +G   +ELM QL  R  LAL+
Sbjct: 28  DLVQRVSILKDELLTIGNSKEKFQNVLDQKGQWLFRTYRDGAGILELMDQLFPRHYLALQ 87

Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
           VL WRR Q  Y  P+T EEY KGIK AGR  +++LA  LF EAA K ++T   YN+L+  
Sbjct: 88  VLEWRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTASVYNSLMSV 147

Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
           YM+NGL+++CQSLF+D +++ + +P++VTYN L+SV+GRLL+V +MEAAF+E++   L P
Sbjct: 148 YMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQKVKLPP 207

Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
           N  TYN+LIAGYMTAW W K+E  +Q MK GPV PDT+TY L+LRGYA+SGNL RME++Y
Sbjct: 208 NSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNRMEEMY 267

Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
           E++K  V     PL+RAMICAY K +V DR++KIE L+ L+  +EY PWLNVLLIR+YA+
Sbjct: 268 EVIKDQVGVNSGPLVRAMICAYCKKAVEDRVQKIENLLSLLSGEEYLPWLNVLLIRLYAQ 327

Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
           ED +E ME  IN+AFE KT V    IMR I+++YFRCN VD LANFVKRAESAGW+LCRS
Sbjct: 328 EDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAGWKLCRS 387

Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
           LYH K++MY SQ+R EEME V+ EM         KTF IM  AY   G      +V G M
Sbjct: 388 LYHCKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGMESDAEKVKGKM 447

Query: 500 CKNG 503
            K G
Sbjct: 448 LKRG 451

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU88|PP204_ARATH Pentatricopeptide repeat-containing protein At2g48000 OS=Arabidopsis thaliana GN=At2g48000 PE=2 SV=1

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/510 (47%), Positives = 316/510 (61%), Gaps = 50/510 (9%)

Query: 2   KRVWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPT 61
           KR+W++S  +Q   LL   +  SS  KTL P   FTL++SP H    D            
Sbjct: 3   KRMWRISLISQISDLLCLSRGSSSTLKTLTPF-CFTLSRSPFHQSGGD------------ 49

Query: 62  LVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY 121
                       DA          S L+++LL   +D  KV  VL+       R    G 
Sbjct: 50  -----------DDA----------SGLKNQLLRFRNDSGKVASVLE-------RNKIQGA 81

Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQA-GYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
           AFVEL++QL   P L+  V +WRR +A   G PMT +EY KGI  +GR+ NVDLA  LF 
Sbjct: 82  AFVELLRQLRPWPVLSQLVFDWRRNKALCDGLPMTADEYAKGITISGRLKNVDLALSLFH 141

Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN----ISPSIVTYNTLISVF 236
           E+ANK   T   YNAL+GAY+ NGLS  C+ LF D   + +     +PS+ TYN LIS++
Sbjct: 142 ESANK---TTSVYNALMGAYLCNGLSHHCEQLFLDFNSQQDGPSSSTPSVSTYNILISLY 198

Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
           GRL++V+ ME+ F +++  N+ P+  TYN LIAGY+ AW W K+E  +  MK G V P  
Sbjct: 199 GRLIMVERMESVFLQLQQLNILPDSSTYNNLIAGYIYAWDWDKMEATFHSMKNGLVKPTL 258

Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
            TYLL+LRGYA+SGNL RME +Y+ VK HVD  E  LI +MICAY +    DRI+KI+ L
Sbjct: 259 ATYLLMLRGYANSGNLLRMEDMYQAVKRHVDRNEIKLIESMICAYYRSCHKDRIRKIKTL 318

Query: 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
            +LIP+K Y+PWL +LL++VYAK+D L  ME  I+ A      + T  IMR IV+SYFRC
Sbjct: 319 SKLIPKKSYKPWLYLLLMQVYAKDDNLHAMENFIDQAITKGLQIETDGIMRSIVASYFRC 378

Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
           NAVDKLA FV+RA SAGW++ RS++H  M+MY SQ+R +EME+VL EME++KI  SKKT 
Sbjct: 379 NAVDKLAKFVQRANSAGWKMSRSMFHGLMIMYGSQKRFKEMENVLSEMESFKISRSKKTL 438

Query: 477 WIMYYAY-ATCGQRRKVNQVLGLMCKNGYD 505
            I+   Y AT GQ  KVNQV G+M K+G+D
Sbjct: 439 CILLRVYAATHGQEHKVNQVAGMMLKHGHD 468

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2

 Score =  103 bits (257), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 116/474 (24%), Positives = 198/474 (41%), Gaps = 44/474 (9%)

Query: 63  VRLLSETLTYPDARVRKDLTQTVS-ALRD----ELLANVDDL----------DKVFRVLD 107
           VR +S +   P+  +  D +   S +LR+    + L N +D+          DK  ++  
Sbjct: 27  VRCISISPREPNYAITSDKSNNTSLSLRETRQSKWLINAEDVNERDSKEIKEDKNTKIAS 86

Query: 108 EKGSCLFRRHSNGYAFVELMKQLGSR---PRLALEVLNWRRRQAGYGTPMTKEE------ 158
            K   +  R     + +E  K+ GS+   PR  LE L+ R     + + +   E      
Sbjct: 87  RKAISIILRREATKSIIE--KKKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQL 144

Query: 159 --------YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKC 209
                   Y K I   G+    + A +LF E  N+  +     Y AL+ AY  +G  D  
Sbjct: 145 WYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAA 204

Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
            +L   +K   N  P + TY+ LI  F ++   D ++    +++   + PN  TYN LI 
Sbjct: 205 FTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLID 264

Query: 270 GYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
            Y  A M+ ++E  + QM+      PD+ T    LR +  +G +  ME  YE  K    G
Sbjct: 265 AYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYE--KFQSSG 322

Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV---LLIRVYAKEDCLEE 385
            E P IR           +   KK+ A+M  + +  Y  W  V   ++I  + +   L++
Sbjct: 323 IE-PNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHY-SWTIVTYNVVIDAFGRAGDLKQ 380

Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
           ME         +   + V +   +V +Y R +  DK+   ++  E++  RL    ++  +
Sbjct: 381 MEYLFRLMQSERIFPSCVTLC-SLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLV 439

Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
             Y    +  EM+ VL+ ME       K T+  M  AY   G    V ++ G++
Sbjct: 440 DAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVV 493

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 166/387 (42%), Gaps = 16/387 (4%)

Query: 115 RRHSNGY--AFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
           R  +NG+     E +  L ++ +   ALEV +  R Q  Y     +  Y K +   G+  
Sbjct: 81  RSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQP--KEGTYMKLLVLLGKSG 138

Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
             + A  LF E   + L+ T+  Y ALL AY  + L D   S+   +K      P + TY
Sbjct: 139 QPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTY 198

Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMK 288
           +TL+         D +++ ++E+ +  ++PN  T N +++GY     + ++E++   M+ 
Sbjct: 199 STLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLV 258

Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
           +    PD  T  ++L  + + G +  ME  YE  ++     E      +I +Y K  + D
Sbjct: 259 STACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYD 318

Query: 349 RIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
           ++  +   MR +   E+ PW       +I  +A     + ME +  D    +      + 
Sbjct: 319 KMSSVMEYMRKL---EF-PWTTSTYNNIIEAFADVGDAKNMELTF-DQMRSEGMKADTKT 373

Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
             C+++ Y       K+ + V+ A         + Y++ +   A    + EME V   M+
Sbjct: 374 FCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRMK 433

Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKV 492
             +  C  +TF IM  AY   G   K+
Sbjct: 434 ERQCVCDSRTFEIMVEAYEKEGMNDKI 460

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 98/449 (21%), Positives = 185/449 (41%), Gaps = 62/449 (13%)

Query: 78  RKDLTQTVSALRDE------LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG 131
           R+ L +  SA R+       L++ + D + + + LD+    +   H     F+ L ++LG
Sbjct: 54  RRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRCDH----CFL-LFEELG 108

Query: 132 SRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
              +    LEV  W ++Q  Y  P     Y+K I   G+     +A  LF+E  N   + 
Sbjct: 109 KSDKWLQCLEVFRWMQKQRWY-IP-DNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRP 166

Query: 190 IGT-YNALLGAYMYNGLSDKCQSLFR------DLKKEANISPSIVTYNTLISVFGRLLLV 242
             + YNAL+ A+++    DK ++L +       +K      P++VTYN L+  F +   V
Sbjct: 167 DASVYNALITAHLHT--RDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKV 224

Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
           D + A F+++  S +SP+V+T+N ++  Y    M  ++E +   M++    PD  T+ +L
Sbjct: 225 DQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVL 284

Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
           +  Y       +ME+ ++ +    +    P   +MI  Y K  + D   K E + + + +
Sbjct: 285 IDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMID---KAEWVFKKMND 341

Query: 363 KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
             Y P                               S  T     C++  Y  C +V + 
Sbjct: 342 MNYIP-------------------------------SFITY---ECMIMMYGYCGSVSRA 367

Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
               +    +   L  S  ++ + +Y       E + +      +++     T+  +Y A
Sbjct: 368 REIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKA 427

Query: 483 YATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
           Y     + +V  ++  M K+G  VP   F
Sbjct: 428 YTKADMKEQVQILMKKMEKDGI-VPNKRF 455

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 160/384 (41%), Gaps = 26/384 (6%)

Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
           +  E M+  G +P +     N   +  G      + ++T+ +K    IN   L+ D    
Sbjct: 405 SIFEEMRNAGCKPNIC--TFNAFIKMYG-----NRGKFTEMMKIFDEINVCGLSPD---- 453

Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
                   I T+N LL  +  NG+  +   +F+++K+ A   P   T+NTLIS + R   
Sbjct: 454 --------IVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERETFNTLISAYSRCGS 504

Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
            +     ++ + D+ ++P++ TYN ++A      MW + E++   M+ G   P+  TY  
Sbjct: 505 FEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCS 564

Query: 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
           LL  YA+   +  M  + E V   V      L++ ++   SKC   D + + E     + 
Sbjct: 565 LLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKC---DLLPEAERAFSELK 621

Query: 362 EKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
           E+ + P +  L  ++ +Y +   + +    + D  + +    ++     ++  + R    
Sbjct: 622 ERGFSPDITTLNSMVSIYGRRQMVAKA-NGVLDYMKERGFTPSMATYNSLMYMHSRSADF 680

Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
            K    ++   + G +     Y++ +  Y    R+ +   +  EM N  I     T+   
Sbjct: 681 GKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTF 740

Query: 480 YYAYATCGQRRKVNQVLGLMCKNG 503
             +YA      +   V+  M K+G
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHG 764

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 18/385 (4%)

Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TI 190
           +R + AL++ N  R+Q  Y  P  K  YTK  K  G     D A+ LF    ++ LK TI
Sbjct: 72  NRWQSALKIFNLLRKQHWY-EPRCKT-YTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTI 129

Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
             Y +L+  Y  + L DK  S    +K  ++  P + T+  LIS   +L   D +++   
Sbjct: 130 DVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVL 189

Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHS 309
           E+    +  +  TYN +I GY  A M+ ++E +   M++ G  +PD  T   ++  Y + 
Sbjct: 190 EMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNG 249

Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
            N+ +ME  Y   +      +      +I ++ K  +    KK+ ++M  + EK +    
Sbjct: 250 RNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGM---YKKMCSVMDFM-EKRFFSLT 305

Query: 370 NV---LLIRVYAKEDCLEEMEKSINDAFEHK--TSVTTVRIMRC-IVSSYFRCNAVDKLA 423
            V   ++I  + K   +E+M+    D F       V    I  C +V++Y +   V K+ 
Sbjct: 306 TVTYNIVIETFGKAGRIEKMD----DVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKID 361

Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
           + +++  ++   L    ++  +  Y     +  M+ +  +ME  K    K TF  M   Y
Sbjct: 362 SVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY 421

Query: 484 ATCGQRRKVNQVLGLMCKNGYDVPV 508
              G    V ++   M  +G ++ +
Sbjct: 422 TAHGIFDAVQELEKQMISSGENLDI 446

Arabidopsis thaliana (taxid: 3702)

>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 6/251 (2%)

Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
           KT  TY +LL  Y    L++K + L   +K E NI+PS ++YN+L++++ +    + + A
Sbjct: 121 KTELTYGSLLNCYCKELLTEKAEGLLNKMK-ELNITPSSMSYNSLMTLYTKTGETEKVPA 179

Query: 248 AFQEIKDSNLSPNVFTYN-YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
             QE+K  N+ P+ +TYN ++ A   T  + G    I +M + G V PD  TY  +   Y
Sbjct: 180 MIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIY 239

Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL-IPEKEY 365
             +G   + EK  + ++     ++F   + +I  Y +      + +I   +RL IP+   
Sbjct: 240 VDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSN 299

Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
             +LN  +I+V  K + L   E ++   ++   S   +RI+  ++ +Y +   + K    
Sbjct: 300 VAYLN--MIQVLVKLNDLPGAE-TLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANEL 356

Query: 426 VKRAESAGWRL 436
            ++A   G +L
Sbjct: 357 KEKAPRRGGKL 367

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 165/403 (40%), Gaps = 16/403 (3%)

Query: 92  LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR--LALEVLNWRRRQAG 149
           LL     LDK   V DE  S    R    +++  L+   G   R   +LE+L+  + +  
Sbjct: 150 LLGREGLLDKCLEVFDEMPSQGVSRSV--FSYTALINAYGRNGRYETSLELLDRMKNEKI 207

Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAA--DLFAEAANKHLK-TIGTYNALLGAYMYNGLS 206
             + +T   Y   I    R   +D      LFAE  ++ ++  I TYN LL A    GL 
Sbjct: 208 SPSILT---YNTVINACAR-GGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG 263

Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
           D+ + +FR +  +  I P + TY+ L+  FG+L  ++ +     E+      P++ +YN 
Sbjct: 264 DEAEMVFRTMN-DGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNV 322

Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
           L+  Y  +    +   ++  M+A    P+ NTY +LL  +  SG    + +++  +K   
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382

Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA-KEDCLEE 385
              +      +I  + +       K++  L   + E+   P +      ++A  +  L E
Sbjct: 383 TDPDAATYNILIEVFGEGGY---FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439

Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
             + I         V + +    ++ ++ +    ++           G       +HS +
Sbjct: 440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLL 499

Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
             +A    V+E E++L  + +  I  ++ TF     AY   G+
Sbjct: 500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGK 542

Involved in plastid gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 150/359 (41%), Gaps = 20/359 (5%)

Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
           +K  GR   V  A  +F +A  +  K T  TYN+++   M  G  +K   ++ ++  E +
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228

Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
             P  +TY+ LIS + +L   D     F E+KD+ + P    Y  L+  Y       K  
Sbjct: 229 CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288

Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGKEFPLIRAMICA 340
           ++++ MK     P   TY  L++G   +G   R+++ Y   K  + DG    L   ++  
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAG---RVDEAYGFYKDMLRDG----LTPDVVFL 341

Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPW--------LNVLLIRVYAKEDCLEEMEKSIND 392
            +  ++  ++ ++E L  +  E     W         N ++  ++  +  + E+  S  D
Sbjct: 342 NNLMNILGKVGRVEELTNVFSEMGM--WRCTPTVVSYNTVIKALFESKAHVSEV-SSWFD 398

Query: 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452
             +  +   +      ++  Y + N V+K    ++  +  G+  C + Y S +      +
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458

Query: 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
           R E    + KE++    + S + + +M   +  CG+  +   +   M   G    V A+
Sbjct: 459 RYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
225436849	494	PREDICTED: pentatricopeptide repeat-cont	0.955	0.991	0.613	0.0
255567580	509	pentatricopeptide repeat-containing prot	0.988	0.996	0.603	1e-179
449460469	514	PREDICTED: pentatricopeptide repeat-cont	0.832	0.830	0.614	1e-158
356503505	442	PREDICTED: pentatricopeptide repeat-cont	0.844	0.979	0.581	1e-149
356570536	504	PREDICTED: pentatricopeptide repeat-cont	0.972	0.990	0.519	1e-145
87241379	514	Pentatricopeptide repeat [Medicago trunc	0.826	0.824	0.541	1e-138
15224571	452	pentatricopeptide repeat-containing prot	0.826	0.938	0.558	1e-136
297822793	452	pentatricopeptide repeat-containing prot	0.849	0.964	0.532	1e-136
357450593	621	Pentatricopeptide repeat-containing prot	0.826	0.682	0.534	1e-136
224139152	360	predicted protein [Populus trichocarpa]	0.699	0.997	0.615	1e-131

>gi|225436849|ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780 [Vitis vinifera] gi|296086664|emb|CBI32299.3| unnamed protein product [Vitis vinifera]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/517 (61%), Positives = 387/517 (74%), Gaps = 27/517 (5%)

Query: 1   MKRVWKLSDAAQTELLLQRLQRHSSKPKTLPP----LSVFTLTKSPNHSFTRDLCAPATH 56
           MKRVWK      + L+        +KPK L P    L+  T T++P       L  P T 
Sbjct: 1   MKRVWK------SGLI-------CTKPKILTPDFQNLARVTHTRTP-------LQGPYTL 40

Query: 57  TVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRR 116
           T   +++ L S+  +  D R R++L   VS LRDEL+ + DD D V RVL+EKG  LFR 
Sbjct: 41  T---SMIGLFSDKHSELDLRAREELRGKVSQLRDELVPSGDDSDMVVRVLEEKGESLFRS 97

Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
           +SNG AFVEL+KQL S P LAL+V NWRR Q  Y  PMT EEY KGI  AGR  NVDLA 
Sbjct: 98  YSNGSAFVELLKQLSSWPYLALQVFNWRRNQTDYSIPMTSEEYAKGISVAGRTKNVDLAV 157

Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
           +LF EAANK +KT  TYNAL+GAYM NG ++KCQ+LFRDLK+EA+ SP+IVTYN LISVF
Sbjct: 158 ELFTEAANKQIKTTSTYNALMGAYMCNGHAEKCQALFRDLKREASCSPTIVTYNILISVF 217

Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
           GRL+LVDHMEA F+EIK+  LSPN+ TYN +IAGY+TAWMW ++E+ ++ MK   + PD 
Sbjct: 218 GRLMLVDHMEATFREIKELELSPNISTYNNIIAGYVTAWMWNRMEDTFRTMKEDNIQPDI 277

Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
           NT+LL+LRGYAHSGNL +ME+ YEL+K HV+ KE PLIRAMICAY K S+TDR++KI AL
Sbjct: 278 NTHLLMLRGYAHSGNLQKMEETYELIKGHVNDKEIPLIRAMICAYCKSSITDRVEKIGAL 337

Query: 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
           M+LIPE EYRPWLNV+LIRVYA+ED +EEME SIN+AFEHKTSV T+R+MR I+++YFRC
Sbjct: 338 MKLIPENEYRPWLNVMLIRVYAQEDWVEEMENSINEAFEHKTSVKTMRVMRSIIATYFRC 397

Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
           NAVD+LANFVKRAE  GW +CRSLYH KMVMYASQ+R+EEMESVL EME+    C+KKTF
Sbjct: 398 NAVDRLANFVKRAECGGWHICRSLYHCKMVMYASQKRLEEMESVLNEMESSNFCCTKKTF 457

Query: 477 WIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
           WI+Y AY+   QR KV QV GLMCK+GY +P +   S
Sbjct: 458 WILYKAYSMWDQRHKVEQVKGLMCKHGYGIPSDVLLS 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567580|ref|XP_002524769.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535953|gb|EEF37612.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 311/515 (60%), Positives = 394/515 (76%), Gaps = 8/515 (1%)

Query: 1   MKRVWKLSD-AAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVF 59
           MKRV K+SD A Q ELL   L +  S  +TL P  + TLTKSP +   R   +    + F
Sbjct: 1   MKRVSKISDLAVQAELL--SLNKFPSITQTLTPY-ILTLTKSPIYKLARAHTSEPV-SFF 56

Query: 60  PTLVRLLSETLTYP-DARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHS 118
           P ++ L S    +P D +  +DL++TVS LRDEL+ + +D DK FRVL+E+G  LFR  S
Sbjct: 57  PNIISLFSRR--FPVDNKAIEDLSKTVSHLRDELVQHAEDSDKFFRVLEEQGDSLFRMRS 114

Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
           +  A VEL++QL S P LA+EV NWRR+Q  + TPMT EEY KGI  AGR  NVDLA ++
Sbjct: 115 DRSALVELLRQLVSLPHLAVEVFNWRRKQTEWSTPMTHEEYAKGITIAGRAKNVDLAIEI 174

Query: 179 FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
           FAEA +K  K    YNAL+GAYMYNG  DKCQSLF D KKEANI PS+VTYN LISVFGR
Sbjct: 175 FAEACSKRRKKTCIYNALMGAYMYNGHYDKCQSLFLDFKKEANIGPSVVTYNILISVFGR 234

Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
            +LVDHMEA F+E+ + N+SPNV TYN LIAGY+TAWMW  +E+++Q+MK GP+ P  +T
Sbjct: 235 SMLVDHMEATFRELMNLNISPNVSTYNNLIAGYVTAWMWDDMEQVFQLMKEGPIYPHLDT 294

Query: 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
           YLL+LRGYAHSGN+ +ME++Y+LV+ HV+  E PLIR MICAY K S+TDRIKKIE L+R
Sbjct: 295 YLLMLRGYAHSGNIEKMEEMYKLVQDHVNVNEVPLIRTMICAYCKSSITDRIKKIEELLR 354

Query: 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418
           LIPE+EYRPWLNVLLI+VYA+++ LE ME  I++AF+H+T++TTV IMR I++SYFRCNA
Sbjct: 355 LIPEEEYRPWLNVLLIKVYAQQNLLEAMENKIDEAFKHETTITTVGIMRTIIASYFRCNA 414

Query: 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWI 478
           VD+LA+FVKRAE +GWR+CRSLYH KMVMYAS++R++EMESVL +MEN+ +  +KKTF I
Sbjct: 415 VDRLADFVKRAECSGWRICRSLYHCKMVMYASEKRLDEMESVLNDMENFNLGRTKKTFVI 474

Query: 479 MYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
           +Y AY  CG++ KV QVLGLM K+GY+VP  A PS
Sbjct: 475 LYKAYLMCGKKYKVEQVLGLMYKHGYEVPEGASPS 509

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460469|ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like [Cucumis sativus] gi|449494249|ref|XP_004159492.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like [Cucumis sativus]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 263/428 (61%), Positives = 336/428 (78%), Gaps = 1/428 (0%)

Query: 81  LTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEV 140
           + + V  +  EL+ N +D +K+ ++L++    L  +H++G AFVEL+KQLGS+P LALEV
Sbjct: 81  MERKVLEVSHELILNSEDSNKIVKILEDSKDLLLWKHTDGSAFVELLKQLGSQPNLALEV 140

Query: 141 LNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAY 200
            NWRRRQ G   P+T EEY KGI  AG+  ++DLA  LF EA+NK +K   TYNAL+G +
Sbjct: 141 FNWRRRQGG-SFPLTVEEYAKGIAVAGKSKHIDLAVGLFNEASNKRVKATSTYNALMGVF 199

Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
           M+NGL+DKC S+FRDLK++A   P+IVTYN LISVFGRL+LVDHMEA  +EI + NLSPN
Sbjct: 200 MFNGLADKCNSVFRDLKRDAGCVPNIVTYNILISVFGRLMLVDHMEATMREIHNLNLSPN 259

Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
           V TYN LIAGY+TAWMW ++E+ +  MKA  + P+T T+LL+LRGYAHS NL +ME+++ 
Sbjct: 260 VNTYNSLIAGYITAWMWKRMEQAFMKMKASSITPNTETFLLMLRGYAHSDNLEKMEEMHH 319

Query: 321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE 380
            +K HV+   FPLIRAMI AYS+ S+TD++ KI+AL++LIPE+EYRPWLNV LIRVYA+ 
Sbjct: 320 FLKDHVNKNNFPLIRAMIYAYSRSSITDKVHKIDALLKLIPEEEYRPWLNVKLIRVYAQA 379

Query: 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440
           DCLE ME SIN+AFEH TSV TV +MR I++SYFRCNAVDKL NF+ RAES+GWR+CRSL
Sbjct: 380 DCLERMENSINEAFEHGTSVYTVHVMRSIIASYFRCNAVDKLINFISRAESSGWRICRSL 439

Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
           YH KMVM+ASQ R+EEME VL EM+N+ +D SKKTF+I+Y AY+T G R K NQV+  MC
Sbjct: 440 YHCKMVMFASQNRLEEMECVLDEMKNFNLDWSKKTFYILYKAYSTSGCRYKANQVVCRMC 499

Query: 501 KNGYDVPV 508
           K GY VPV
Sbjct: 500 KLGYGVPV 507

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503505|ref|XP_003520548.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like [Glycine max]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/433 (58%), Positives = 328/433 (75%)

Query: 80  DLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE 139
           DL   V+ L++EL+ +  D  +V  +LD+    LFRRH NG A ++LM QL S P LAL+
Sbjct: 10  DLINKVTILKNELIRDSCDSARVQTILDDSFDTLFRRHPNGSALLKLMNQLNSNPSLALQ 69

Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
           V +WRR+++    PM   EY+KGIK AGR  NVDLA  LF EAA K +KT GTYNAL+GA
Sbjct: 70  VFSWRRKRSNAENPMDAYEYSKGIKAAGRSGNVDLAVKLFKEAAVKGIKTTGTYNALMGA 129

Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
           +M+NGL D CQSLF DLK++    PSI TYN L+SV+GRL+LVDHMEA F EI+  NL+ 
Sbjct: 130 FMFNGLPDNCQSLFCDLKRDLTCDPSIATYNILLSVYGRLMLVDHMEATFSEIQRLNLAM 189

Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
           N+ TYN+LIAGY+TAWMW  +E+++QM+K   V P+  T+LL+LRGYA+SGNL +ME++Y
Sbjct: 190 NICTYNHLIAGYITAWMWDDMEKVFQMLKLSSVEPNMKTHLLMLRGYANSGNLEKMEEMY 249

Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
             ++ HV+ KE  LIR MICAY + S  DR+KKIE L++ IP+KEYRPWLNVLLI++YAK
Sbjct: 250 SFIRDHVNIKEISLIRCMICAYCRSSHADRLKKIELLLKFIPQKEYRPWLNVLLIKLYAK 309

Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
           ED L +ME +IN+AFEH TS+TT  I+R I+++Y+RCNAV+KL NFV+RAE +GW +CRS
Sbjct: 310 EDWLAKMENAINEAFEHGTSITTKGILRRIIATYYRCNAVEKLENFVRRAEISGWSICRS 369

Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
           LYH K+VMY SQ  + EM +VL+EMEN K+ CSKKT WIMY AY + GQ   V + LG M
Sbjct: 370 LYHCKLVMYGSQMTLLEMHNVLEEMENVKLKCSKKTLWIMYKAYMSRGQISMVLKTLGQM 429

Query: 500 CKNGYDVPVNAFP 512
            K+GY+VP++AFP
Sbjct: 430 FKHGYEVPLSAFP 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570536|ref|XP_003553441.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like [Glycine max]

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/518 (51%), Positives = 352/518 (67%), Gaps = 19/518 (3%)

Query: 1   MKRVWKLS-DAAQTELLLQRLQRHS----SKPKTLPPLSVFTLTKSPNHSFTRDLCAPAT 55
           M+RVW+ S DA +   LL  LQ H     S PKT P L+   L+   N +   + C+   
Sbjct: 1   MRRVWRFSSDATRRAQLLLLLQSHYFHGFSNPKTTPSLAT-ALSHHRNLNSVPNACS--- 56

Query: 56  HTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFR 115
                 L+ L +       +  ++DL    S L++EL+    D  +V  +LD+    L +
Sbjct: 57  -----DLIPLFTAKSC---SSAKEDLINKASILKNELIRESSDSARVLSILDDNSDTLIQ 108

Query: 116 RHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLA 175
           RH +G   + LM QL S P LAL+V +WRR+++    PM   EY+KGIK AGR  NVDLA
Sbjct: 109 RHPDGSVLLRLMNQLNSNPSLALQVFSWRRKRSNVENPMDAYEYSKGIKAAGRSGNVDLA 168

Query: 176 ADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
             LF EAA K +KT  TYNAL+GA M NGL+D CQSLF DLK++    PSI TYN L+SV
Sbjct: 169 VKLFKEAAVKGIKTTSTYNALMGACMSNGLADNCQSLFCDLKRDPTCDPSIATYNILLSV 228

Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
           FGRL+LVDHMEA F+EI+    + N+ TYN++IAGY+TAWMW  +E ++QM+K  PV P+
Sbjct: 229 FGRLMLVDHMEATFREIQKLTFTMNICTYNHMIAGYITAWMWDDMENVFQMLKRSPVEPN 288

Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355
             TY+L+LRGYA+SGNL +ME+IY  +   VD KE  LIR MICAYS+ S  DR+KKIE 
Sbjct: 289 MKTYMLMLRGYANSGNLEKMEEIYSFITDRVDIKEISLIRCMICAYSRSSDADRLKKIEL 348

Query: 356 LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415
           L++ IP KEYRPWLNVLLI++YAKED LE+ME +IN+AFEH TS+TT  I+RCIV++Y+R
Sbjct: 349 LLKFIPGKEYRPWLNVLLIKLYAKEDWLEKMENAINEAFEHGTSITTKGILRCIVATYYR 408

Query: 416 CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKT 475
            NAV+KL NFV+RAE +GW +CRS YH K+VMY SQ  +  M +VL+EME   ++C+KKT
Sbjct: 409 YNAVEKLENFVRRAEISGWSICRSAYHCKLVMYGSQ--LPLMHNVLEEMEMVNLECTKKT 466

Query: 476 FWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
            WIMY AY   GQ   V + LG M K+GY+VP++AFPS
Sbjct: 467 LWIMYKAYMRNGQSSMVLKTLGQMFKHGYEVPLSAFPS 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87241379|gb|ABD33237.1| Pentatricopeptide repeat [Medicago truncatula]

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 235/434 (54%), Positives = 318/434 (73%), Gaps = 10/434 (2%)

Query: 85  VSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWR 144
           V+ L  +L+    D   V  +LDE    L   H     +++L+ QL S+P L LEV+NWR
Sbjct: 86  VAILVKDLICVASDSVSVTSILDENSEFLIGSHP---VYIQLLNQLDSKPSLLLEVINWR 142

Query: 145 R-RQAGYG----TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
           R R+  +       M   EY+KGIK AGR  N+DLA  LF EA  K +K   TYNAL+GA
Sbjct: 143 RKRKVSFSDACRNSMQAHEYSKGIKAAGRSRNIDLAVALFKEAEFKGVKITSTYNALMGA 202

Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
           YM+NGLSDKC SLF D+KK+    PS+ TYN +ISVFGRL+L+DHMEA F+E+ +  L+P
Sbjct: 203 YMFNGLSDKCYSLFLDMKKDPTCFPSVATYNIVISVFGRLMLIDHMEATFKEMNELPLAP 262

Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
           N+ TYNYLI GY++ WMWG +E ++Q++ +GPV P+  TYLL++RGYAH GNL +MEKIY
Sbjct: 263 NISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNMKTYLLMIRGYAHLGNLEKMEKIY 322

Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
            LVK +V+  + P+IR MICAY K S  D++ K++AL++LIPEKEYRPWLNVLLI++YA+
Sbjct: 323 SLVKDNVN--DMPIIRVMICAYCKSSDADKMNKVKALLKLIPEKEYRPWLNVLLIKLYAE 380

Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
            +CLEEM+ +IN+AFE +T VTT+ IMRCI+++YFR NA++ L  F +R+  AGWR+C S
Sbjct: 381 GNCLEEMDNAINEAFERRTVVTTMGIMRCIITAYFRNNAIESLEKFTRRSVLAGWRMCYS 440

Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
           LYHSK+VMY SQ+ + EM++VL+EM++  I  +KKT WIMY AY  CGQR  V ++LG M
Sbjct: 441 LYHSKLVMYGSQKNLREMQNVLEEMDSVNIQRTKKTMWIMYKAYWNCGQRSMVLKILGQM 500

Query: 500 CKNGYDVPVNAFPS 513
            K+G++VP++AFPS
Sbjct: 501 FKHGHEVPIDAFPS 514

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224571|ref|NP_180636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75219588|sp|O49343.1|PP177_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g30780 gi|2880055|gb|AAC02749.1| hypothetical protein [Arabidopsis thaliana] gi|110736845|dbj|BAF00380.1| hypothetical protein [Arabidopsis thaliana] gi|330253346|gb|AEC08440.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/424 (55%), Positives = 302/424 (71%)

Query: 80  DLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE 139
           DL Q VS L+DELL   +  +K   VLD+KG  LFR + +G   +ELM QL  R  LAL+
Sbjct: 28  DLVQRVSILKDELLTIGNSKEKFQNVLDQKGQWLFRTYRDGAGILELMDQLFPRHYLALQ 87

Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
           VL WRR Q  Y  P+T EEY KGIK AGR  +++LA  LF EAA K ++T   YN+L+  
Sbjct: 88  VLEWRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTASVYNSLMSV 147

Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
           YM+NGL+++CQSLF+D +++ + +P++VTYN L+SV+GRLL+V +MEAAF+E++   L P
Sbjct: 148 YMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQKVKLPP 207

Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
           N  TYN+LIAGYMTAW W K+E  +Q MK GPV PDT+TY L+LRGYA+SGNL RME++Y
Sbjct: 208 NSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNRMEEMY 267

Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
           E++K  V     PL+RAMICAY K +V DR++KIE L+ L+  +EY PWLNVLLIR+YA+
Sbjct: 268 EVIKDQVGVNSGPLVRAMICAYCKKAVEDRVQKIENLLSLLSGEEYLPWLNVLLIRLYAQ 327

Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
           ED +E ME  IN+AFE KT V    IMR I+++YFRCN VD LANFVKRAESAGW+LCRS
Sbjct: 328 EDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAGWKLCRS 387

Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
           LYH K++MY SQ+R EEME V+ EM         KTF IM  AY   G      +V G M
Sbjct: 388 LYHCKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGMESDAEKVKGKM 447

Query: 500 CKNG 503
            K G
Sbjct: 448 LKRG 451

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822793|ref|XP_002879279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325118|gb|EFH55538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/458 (53%), Positives = 309/458 (67%), Gaps = 22/458 (4%)

Query: 46  FTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRV 105
           FTR    PA HT                      DL Q VS L+DELL   +  +K   V
Sbjct: 16  FTRVTSLPAHHT----------------------DLVQRVSILKDELLTIGNSKEKFQNV 53

Query: 106 LDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKF 165
           LD+KG  LF+ + +G   +ELM QL  R  LAL+VL WRR Q  Y  P+T EEY KGIK 
Sbjct: 54  LDQKGQWLFKSYRDGAGILELMDQLFPRHYLALQVLEWRRGQKDYCIPLTSEEYAKGIKI 113

Query: 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
           AGR  +++LA  LF EAA K  +T   YNAL+  YM+NGL+D+CQSLF+D +++ + +P+
Sbjct: 114 AGRARDINLAVYLFDEAAKKRSQTASVYNALMSVYMWNGLADECQSLFKDFRRQTHCAPT 173

Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
           +VTYN L+SV+GRLL+V +MEAAF+E++   LSPN  TYN+LIAGYMTAW W K+E  +Q
Sbjct: 174 VVTYNILVSVYGRLLMVKNMEAAFEELQKLKLSPNSVTYNFLIAGYMTAWNWDKMEATFQ 233

Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
            MK G V PDT+TY L+LRGYA+SGNL +ME++YE++K  V     PL+RAMICAY K +
Sbjct: 234 EMKRGLVEPDTDTYQLMLRGYANSGNLNKMEEMYEVIKDQVGVNSSPLVRAMICAYCKKA 293

Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
           V DR++K+E L+ L+  +EY PWLN LLIR+YA+ED +E ME  IN+AFEHKT V    I
Sbjct: 294 VEDRVQKVENLLSLLSGEEYLPWLNGLLIRLYAQEDIVEAMESKINEAFEHKTCVNKSSI 353

Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
           MR I+++YFR N VD LANFVKRAESAGW+LCRSLYH K++MY SQ+R EEME VL EM 
Sbjct: 354 MRAIIAAYFRFNEVDNLANFVKRAESAGWKLCRSLYHCKIMMYGSQKRFEEMEGVLNEMA 413

Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
                   KTF IMY AY   G      +V G+M K G
Sbjct: 414 ETNYGLVTKTFAIMYKAYKNHGMESDAEKVKGMMLKRG 451

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450593|ref|XP_003595573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355484621|gb|AES65824.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/434 (53%), Positives = 315/434 (72%), Gaps = 10/434 (2%)

Query: 85  VSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWR 144
           V+ L  +L+    D   V  +LDE    L   H     +++L+ QL S+P L LEV+NWR
Sbjct: 86  VAILVKDLICVASDSVSVTSILDENSEFLIGSHP---VYIQLLNQLDSKPSLLLEVINWR 142

Query: 145 R-RQAGYG----TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
           R R+  +       M   EY+KGIK AGR  N+DLA  LF EA  K +K   TYNAL+GA
Sbjct: 143 RKRKVSFSDACRNSMQAHEYSKGIKAAGRSRNIDLAVALFKEAEFKGVKITSTYNALMGA 202

Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
           YM+NGLSDKC SLF D+KK+    PS+ TYN +ISVFGRL+L+DHMEA F+E+ +  L+P
Sbjct: 203 YMFNGLSDKCYSLFLDMKKDPTCFPSVATYNIVISVFGRLMLIDHMEATFKEMNELPLAP 262

Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
           N+ TYNYLI GY++ WMWG +E ++Q++ +GPV P+  TYLL++RGYAH GNL +MEKIY
Sbjct: 263 NISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNMKTYLLMIRGYAHLGNLEKMEKIY 322

Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
            LVK +V+  + P+IR MICAY K S  D++ K++AL++LIPEKEYRPWLNVLLI++YA+
Sbjct: 323 SLVKDNVN--DMPIIRVMICAYCKSSDADKMNKVKALLKLIPEKEYRPWLNVLLIKLYAE 380

Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
            +CLEEM+ +IN+AFE +T VTT+ IMRCI+++YFR NA++ L  F +R+  AGWR+C S
Sbjct: 381 GNCLEEMDNAINEAFERRTVVTTMGIMRCIITAYFRNNAIESLEKFTRRSVLAGWRMCYS 440

Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
           LYHSK+VMY SQ+ + EM++VL+EM++  I  +KKT WIMY AY  CGQR  V ++LG M
Sbjct: 441 LYHSKLVMYGSQKNLREMQNVLEEMDSVNIQRTKKTMWIMYKAYWNCGQRSMVLKILGQM 500

Query: 500 CKNGYDVPVNAFPS 513
            K+G++VP++   S
Sbjct: 501 FKHGHEVPIDNMAS 514

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139152|ref|XP_002322993.1| predicted protein [Populus trichocarpa] gi|222867623|gb|EEF04754.1| predicted protein [Populus trichocarpa]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/359 (61%), Positives = 280/359 (77%)

Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
           MT  EY KGI  AG   NVDLA ++F EA  K +KT   YNAL+ A M NGL+ KC+SLF
Sbjct: 1   MTAAEYAKGIMIAGTDKNVDLAVEIFDEAIKKCIKTTSMYNALMTACMCNGLAGKCESLF 60

Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
           R++K++    PS+VTYN L+SVFGRL+LVD MEA F+E++DS +SPN+ TYN LI+GY+T
Sbjct: 61  REMKRDVKCRPSVVTYNILVSVFGRLMLVDKMEAIFKEMEDSRISPNLTTYNNLISGYVT 120

Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
            WMW  +E+ +QMM AGPV PD NT+LL+LRGYAHSG+L +ME +YEL+K HV+ +   L
Sbjct: 121 VWMWDSMEKTFQMMIAGPVKPDLNTHLLMLRGYAHSGHLEQMELVYELIKDHVNARRLTL 180

Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393
           IRAMICAY K S+ +R++KIEALMRLIPEKEYRPWLNVLLI++YA+ED LE ME SIN+A
Sbjct: 181 IRAMICAYCKSSIPERVQKIEALMRLIPEKEYRPWLNVLLIKLYAEEDRLEGMENSINEA 240

Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
           F H+ +++TV IM+ I++SYFRCNAVDKL +F+KRA  A WR+ R L+H KMVMY +Q+R
Sbjct: 241 FNHRITISTVSIMQAIITSYFRCNAVDKLTDFIKRATYARWRIIRPLFHCKMVMYGTQKR 300

Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFP 512
           ++EMESVL EMEN  +  +KKTFWI+Y AY  CGQ  KV QV GLMCK+GY  P +  P
Sbjct: 301 LDEMESVLIEMENCNLPRTKKTFWILYKAYLNCGQWYKVEQVAGLMCKHGYGNPFDTSP 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
TAIR|locus:2054462	452	AT2G30780 "AT2G30780" [Arabido	0.826	0.938	0.558	2.4e-124
TAIR|locus:2081041	486	PPR2 "pentatricopeptide repeat	0.721	0.761	0.239	4.6e-20
TAIR|locus:2151281	819	AT5G02860 [Arabidopsis thalian	0.695	0.435	0.261	1.3e-18
TAIR|locus:2122561	563	EMB2453 "EMBRYO DEFECTIVE 2453	0.752	0.685	0.228	2.8e-17
TAIR|locus:2036586	491	AT1G60770 [Arabidopsis thalian	0.606	0.633	0.253	2e-15
TAIR|locus:2093472	642	AT3G16010 [Arabidopsis thalian	0.662	0.529	0.217	3.7e-15
TAIR|locus:2020808	660	AT1G03560 [Arabidopsis thalian	0.715	0.556	0.226	2.9e-13
TAIR|locus:2090014	551	AT3G13150 "AT3G13150" [Arabido	0.610	0.568	0.212	5.8e-13
TAIR|locus:2178037	678	AT5G39980 [Arabidopsis thalian	0.549	0.415	0.234	6.3e-13
TAIR|locus:2027166	862	PTAC2 "plastid transcriptional	0.754	0.448	0.213	6.9e-13

TAIR|locus:2054462 AT2G30780 "AT2G30780" [Arabidopsis thaliana (taxid:3702)]

 Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
 Identities = 237/424 (55%), Positives = 302/424 (71%)

Query:    80 DLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE 139
             DL Q VS L+DELL   +  +K   VLD+KG  LFR + +G   +ELM QL  R  LAL+
Sbjct:    28 DLVQRVSILKDELLTIGNSKEKFQNVLDQKGQWLFRTYRDGAGILELMDQLFPRHYLALQ 87

Query:   140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
             VL WRR Q  Y  P+T EEY KGIK AGR  +++LA  LF EAA K ++T   YN+L+  
Sbjct:    88 VLEWRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTASVYNSLMSV 147

Query:   200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
             YM+NGL+++CQSLF+D +++ + +P++VTYN L+SV+GRLL+V +MEAAF+E++   L P
Sbjct:   148 YMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQKVKLPP 207

Query:   260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
             N  TYN+LIAGYMTAW W K+E  +Q MK GPV PDT+TY L+LRGYA+SGNL RME++Y
Sbjct:   208 NSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNRMEEMY 267

Query:   320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
             E++K  V     PL+RAMICAY K +V DR++KIE L+ L+  +EY PWLNVLLIR+YA+
Sbjct:   268 EVIKDQVGVNSGPLVRAMICAYCKKAVEDRVQKIENLLSLLSGEEYLPWLNVLLIRLYAQ 327

Query:   380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
             ED +E ME  IN+AFE KT V    IMR I+++YFRCN VD LANFVKRAESAGW+LCRS
Sbjct:   328 EDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAGWKLCRS 387

Query:   440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
             LYH K++MY SQ+R EEME V+ EM         KTF IM  AY   G      +V G M
Sbjct:   388 LYHCKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGMESDAEKVKGKM 447

Query:   500 CKNG 503
              K G
Sbjct:   448 LKRG 451

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081041 PPR2 "pentatricopeptide repeat 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 4.6e-20, P = 4.6e-20
 Identities = 93/388 (23%), Positives = 167/388 (43%)

Query:   115 RRHSNGYA--FVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKE-EYTKGIKFAGRI 169
             R  +NG+     E +  L ++ +   ALEV +  R Q  Y     KE  Y K +   G+ 
Sbjct:    81 RSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFY---QPKEGTYMKLLVLLGKS 137

Query:   170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
                + A  LF E   + L+ T+  Y ALL AY  + L D   S+   +K      P + T
Sbjct:   138 GQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFT 197

Query:   229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MM 287
             Y+TL+         D +++ ++E+ +  ++PN  T N +++GY     + ++E++   M+
Sbjct:   198 YSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDML 257

Query:   288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
              +    PD  T  ++L  + + G +  ME  YE  ++     E      +I +Y K  + 
Sbjct:   258 VSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMY 317

Query:   348 DRIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404
             D++  +   MR +   E+ PW       +I  +A     + ME +  D    +      +
Sbjct:   318 DKMSSVMEYMRKL---EF-PWTTSTYNNIIEAFADVGDAKNMELTF-DQMRSEGMKADTK 372

Query:   405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
                C+++ Y       K+ + V+ A         + Y++ +   A    + EME V   M
Sbjct:   373 TFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRM 432

Query:   465 ENYKIDCSKKTFWIMYYAYATCGQRRKV 492
             +  +  C  +TF IM  AY   G   K+
Sbjct:   433 KERQCVCDSRTFEIMVEAYEKEGMNDKI 460

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0048868 "pollen tube development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0019843 "rRNA binding" evidence=IDA

TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 99/378 (26%), Positives = 165/378 (43%)

Query:   139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALL 197
             E +  + + A  GT      YT  +    R   V+ A  +F E  N   K  I T+NA +
Sbjct:   367 EAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFI 426

Query:   198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
               Y   G   +   +F ++     +SP IVT+NTL++VFG+  +   +   F+E+K +  
Sbjct:   427 KMYGNRGKFTEMMKIFDEINV-CGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF 485

Query:   258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
              P   T+N LI+ Y     + +   +Y+ M    V PD +TY  +L   A  G   + EK
Sbjct:   486 VPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEK 545

Query:   318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY------RPWLNV 371
             +   ++   DG+  P      C+          K+I  LM  + E+ Y      R  L  
Sbjct:   546 VLAEME---DGRCKPN-ELTYCSLLHAYANG--KEI-GLMHSLAEEVYSGVIEPRAVLLK 598

Query:   372 LLIRVYAKEDCLEEMEKSINDAFEHKTS--VTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
              L+ V +K D L E E++ ++  E   S  +TT+  M   VS Y R   V K    +   
Sbjct:   599 TLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSM---VSIYGRRQMVAKANGVLDYM 655

Query:   430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
             +  G+    + Y+S M M++      + E +L+E+    I     ++  + YAY    + 
Sbjct:   656 KERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRM 715

Query:   490 RKVNQVLGLMCKNGYDVP 507
             R  +++   M  +G  VP
Sbjct:   716 RDASRIFSEMRNSGI-VP 732

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122561 EMB2453 "EMBRYO DEFECTIVE 2453" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 95/416 (22%), Positives = 179/416 (43%)

Query:    78 RKDLTQTVSALRDE------LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG 131
             R+ L +  SA R+       L++ + D + + + LD+    +   H     F+ L ++LG
Sbjct:    54 RRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRCDH----CFL-LFEELG 108

Query:   132 SRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
                +    LEV  W ++Q  Y  P     Y+K I   G+     +A  LF+E  N   + 
Sbjct:   109 KSDKWLQCLEVFRWMQKQRWY-IP-DNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRP 166

Query:   190 -IGTYNALLGAYMYNGLSDKCQSL-----FRD-LKKEANISPSIVTYNTLISVFGRLLLV 242
                 YNAL+ A+++    DK ++L     + D +K      P++VTYN L+  F +   V
Sbjct:   167 DASVYNALITAHLHT--RDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKV 224

Query:   243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
             D + A F+++  S +SP+V+T+N ++  Y    M  ++E +   M++    PD  T+ +L
Sbjct:   225 DQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVL 284

Query:   303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
             +  Y       +ME+ ++ +    +    P   +MI  Y K  + D   K E + + + +
Sbjct:   285 IDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMID---KAEWVFKKMND 341

Query:   363 KEYRP-WLNV-LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
               Y P ++    +I +Y     +    +   +  E    V     +  ++  Y R     
Sbjct:   342 MNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGE-SDRVLKASTLNAMLEVYCRNGLYI 400

Query:   421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
             +       A +       S Y      Y      E+++ ++K+ME   I  +K+ F
Sbjct:   401 EADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFF 456

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 83/328 (25%), Positives = 150/328 (45%)

Query:   188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
             KT  TY +LL  Y    L++K + L   +K E NI+PS ++YN+L++++ +    + + A
Sbjct:   121 KTELTYGSLLNCYCKELLTEKAEGLLNKMK-ELNITPSSMSYNSLMTLYTKTGETEKVPA 179

Query:   248 AFQEIKDSNLSPNVFTYN-YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
               QE+K  N+ P+ +TYN ++ A   T  + G    I +M + G V PD  TY  +   Y
Sbjct:   180 MIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIY 239

Query:   307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL-IPEKEY 365
               +G   + EK  + ++     ++F   + +I  Y +      + +I   +RL IP+   
Sbjct:   240 VDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSN 299

Query:   366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
               +LN  +I+V  K + L   E    + ++   S   +RI+  ++ +Y +   + K    
Sbjct:   300 VAYLN--MIQVLVKLNDLPGAETLFKE-WQANCSTYDIRIVNVLIGAYAQEGLIQKANEL 356

Query:   426 VKRAESAGWRLCRSLYHSKMVMYA-SQRRVEEMESVLKEMENYKIDCSKKTFWI-----M 479
              ++A   G +L    +   M  Y  S      +E + K +   K D  K   W+     +
Sbjct:   357 KEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGK---WLPSPETV 413

Query:   480 YYAYATCGQRRKVNQVLGLM--CKNGYD 505
                 +   Q++ VN    L+   KNG D
Sbjct:   414 RALMSYFEQKKDVNGAENLLEILKNGTD 441

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093472 AT3G16010 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 78/358 (21%), Positives = 155/358 (43%)

Query:   163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
             +K  GR   V  A  +F +A  +  K T  TYN+++   M  G  +K   ++ ++  E +
Sbjct:   169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228

Query:   222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
               P  +TY+ LIS + +L   D     F E+KD+ + P    Y  L+  Y       K  
Sbjct:   229 CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288

Query:   282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGKEFPLIRAMICA 340
             ++++ MK     P   TY  L++G   +G   R+++ Y   K  + DG    L   ++  
Sbjct:   289 DLFEEMKRAGCSPTVYTYTELIKGLGKAG---RVDEAYGFYKDMLRDG----LTPDVVFL 341

Query:   341 YSKCSVTDRIKKIEALMRLIPEKE-YR--PWL---NVLLIRVYAKEDCLEEMEKSINDAF 394
              +  ++  ++ ++E L  +  E   +R  P +   N ++  ++  +  + E+  S  D  
Sbjct:   342 NNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVS-SWFDKM 400

Query:   395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
             +  +   +      ++  Y + N V+K    ++  +  G+  C + Y S +      +R 
Sbjct:   401 KADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRY 460

Query:   455 EEMESVLKEM-ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
             E    + KE+ EN+  + S + + +M   +  CG+  +   +   M   G    V A+
Sbjct:   461 EAANELFKELKENFG-NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020808 AT1G03560 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 90/398 (22%), Positives = 175/398 (43%)

Query:   113 LFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV 172
             L +   N  +FV    ++  +P +A     W R+Q  Y   +  E Y   +       +V
Sbjct:   111 LIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNL--ECYVSLVDVLALAKDV 168

Query:   173 DLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
             D    + +E        T+   NAL+ ++   G+ ++   ++R +K E  I P++ TYN 
Sbjct:   169 DRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMK-ENGIEPTLYTYNF 227

Query:   232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
             L++     + VD  E  F+ ++   + P++ TYN +I GY  A    K  E  + M+   
Sbjct:   228 LMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRG 287

Query:   292 VMPDTNTYLLLLRG-YAHS--GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
                D  TY+ +++  YA S  G+   + +  +     V    F L+   +C   K  + +
Sbjct:   288 HEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGK--LNE 345

Query:   349 RIKKIEALMRLIPEKEYRPWLNV--LLIRVYAK----EDCLEEMEKSINDAFEHKTSVTT 402
                  E ++R    K  +P + +  +LI  YAK    ED +  + + I++ F  K  V T
Sbjct:   346 GYTVFENMIR----KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGF--KPDVVT 399

Query:   403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR-RVEEMESVL 461
               +   +V+   +   V++  ++       G  +  S+++S ++    +  RV+E E + 
Sbjct:   400 YSV---VVNGLCKNGRVEEALDYFHTCRFDGLAI-NSMFYSSLIDGLGKAGRVDEAERLF 455

Query:   462 KEMENYKIDCSKKTFWIMYYAYATC-GQRRKVNQVLGL 498
             +EM      C++ ++   Y A      + RKV++ + L
Sbjct:   456 EEMSEK--GCTRDSY--CYNALIDAFTKHRKVDEAIAL 489

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090014 AT3G13150 "AT3G13150" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 5.8e-13, P = 5.8e-13
 Identities = 70/330 (21%), Positives = 151/330 (45%)

Query:   109 KGSC---LFRR-HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIK 164
             K SC    FR+ H    AF+  +++      +  EVL ++++       +  E++   I 
Sbjct:    75 KRSCESESFRQVHGLYSAFIRRLREAKKFSTID-EVLQYQKKF----DDIKSEDFVIRIM 129

Query:   165 FA-GRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI 222
                G     + A  LF E    +  +T+ ++NALL AY+ +   D+    F++L ++  I
Sbjct:   130 LLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGI 189

Query:   223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
             +P +VTYNT+I    R   +D + + F+E++ +   P++ ++N L+  +    ++ + + 
Sbjct:   190 TPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDR 249

Query:   283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
             I+ +MK+  + P+  +Y   +RG   +        + +++K      +     A+I AY 
Sbjct:   250 IWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYR 309

Query:   343 KCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV 400
                V + ++++      + EK   P      +LI +  K+  L+   +   +A +HK  +
Sbjct:   310 ---VDNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKL-L 365

Query:   401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
             +   + + +V        +D+    VK  +
Sbjct:   366 SRPNMYKPVVERLMGAGKIDEATQLVKNGK 395

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178037 AT5G39980 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
 Identities = 69/294 (23%), Positives = 131/294 (44%)

Query:   175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
             A  +FAE    +    + T N ++  Y    +  +   LF  L+K  +I P++V+YNT++
Sbjct:   314 ALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRK-MDIEPNVVSYNTIL 372

Query:   234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
              V+G   L       F+ ++  ++  NV TYN +I  Y       K   + Q M++  + 
Sbjct:   373 RVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIE 432

Query:   294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP--LIRAMICAYSKCSVTDRIK 351
             P+  TY  ++  +  +G L R   +++ ++    G E    L + MI AY +  +    K
Sbjct:   433 PNAITYSTIISIWGKAGKLDRAATLFQKLRS--SGVEIDQVLYQTMIVAYERVGLMGHAK 490

Query:   352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS 411
             ++   ++L P+   R       I + AK    EE       AFE    V  + +  C+++
Sbjct:   491 RLLHELKL-PDNIPRE----TAITILAKAGRTEEATWVFRQAFE-SGEVKDISVFGCMIN 544

Query:   412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
              Y R      +    ++  +AG+    ++    +  Y  QR  E+ ++V +EM+
Sbjct:   545 LYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQ 598

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
 Identities = 86/403 (21%), Positives = 166/403 (41%)

Query:    92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL--ALEVLNWRRRQAG 149
             LL     LDK   V DE  S    R  + +++  L+   G   R   +LE+L+  + +  
Sbjct:   150 LLGREGLLDKCLEVFDEMPSQGVSR--SVFSYTALINAYGRNGRYETSLELLDRMKNEKI 207

Query:   150 YGTPMTKEEYTKGIKFAGRINNVDLAA--DLFAEAANKHLKT-IGTYNALLGAYMYNGLS 206
               + +T   Y   I    R   +D      LFAE  ++ ++  I TYN LL A    GL 
Sbjct:   208 SPSILT---YNTVINACAR-GGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG 263

Query:   207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
             D+ + +FR +  +  I P + TY+ L+  FG+L  ++ +     E+      P++ +YN 
Sbjct:   264 DEAEMVFRTMN-DGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNV 322

Query:   267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
             L+  Y  +    +   ++  M+A    P+ NTY +LL  +  SG    + +++  +K   
Sbjct:   323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382

Query:   327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA-KEDCLEE 385
                +      +I  + +       K++  L   + E+   P +      ++A  +  L E
Sbjct:   383 TDPDAATYNILIEVFGEGGY---FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439

Query:   386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
               + I         V + +    ++ ++ +    ++           G       +HS +
Sbjct:   440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLL 499

Query:   446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
               +A    V+E E++L  + +  I  ++ TF     AY   G+
Sbjct:   500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGK 542

GO:0009507 "chloroplast" evidence=IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49343	PP177_ARATH	No assigned EC number	0.5589	0.8265	0.9380	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023626001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (452 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	513
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-07
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	9e-04
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.001
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.003

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
           P +VTYNTLI  + +   V+     F E+K   + PNV+TY+ LI G 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
           P+V TYN LI GY       +  +++  MK   + P+  TY +L+ G   
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
           TYN L+  Y   G  ++   LF ++KK   I P++ TY+ LI    +
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 15/174 (8%)

Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT---- 192
           A EV          GTP   E YT  +    +  + D     FA +    +K  G     
Sbjct: 598 AKEVYQMIHEYNIKGTP---EVYTIAVNSCSQKGDWD-----FALSIYDDMKKKGVKPDE 649

Query: 193 --YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
             ++AL+    + G  DK   + +D +K+  I    V+Y++L+               ++
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQG-IKLGTVSYSSLMGACSNAKNWKKALELYE 708

Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
           +IK   L P V T N LI          K  E+   MK   + P+T TY +LL 
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 32/166 (19%)

Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
           KT   +N++L  Y  +G S++   L+ +++ ++ +S    T++ +I +F RL L++H + 
Sbjct: 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346

Query: 248 AFQEIKDSNLS-------------------------------PNVFTYNYLIAGYMTAWM 276
           A   +  +                                   N+ ++N LIAGY     
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406

Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
             K  E+++ M A  V P+  T+L +L    +SG   +  +I++ +
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 43/214 (20%)

Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
           T+ A+L A  Y+GLS++   +F+ + +   I P  + Y  +I + GR  L+D    A+  
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE---AYAM 484

Query: 252 IKDSNLSPNVFTYNYLI-AGYMTAWM-WGKV--EEIYQMMKAGPVMPDTNTYLLLLRGYA 307
           I+ +   P V  +  L+ A  +   +  G++  E++Y M   GP     N Y++LL  Y 
Sbjct: 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM---GP--EKLNNYVVLLNLYN 539

Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS-VT-----------DRI----- 350
            SG      K+ E +K           R  +  +  C+ +            DR+     
Sbjct: 540 SSGRQAEAAKVVETLK-----------RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSR 588

Query: 351 ---KKIEALMRLIPEKEYRPWLNVLLIRVYAKED 381
              +K++ LM+ I E  Y    N LL  V   E+
Sbjct: 589 EIYQKLDELMKEISEYGYVAEENELLPDVDEDEE 622

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 1/126 (0%)

Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
           T+ T+N L+     +   D    + R L +EA +      Y TLIS   +   VD M   
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLR-LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494

Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
           F E+ ++ +  NV T+  LI G   A    K    Y +M++  V PD   +  L+     
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554

Query: 309 SGNLPR 314
           SG + R
Sbjct: 555 SGAVDR 560

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 41.8 bits (98), Expect = 9e-04
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 11/150 (7%)

Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQ--EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
           +   N+LI ++  L      E  F   E KD        ++  +I+GY    +  K  E 
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKD------AVSWTAMISGYEKNGLPDKALET 376

Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
           Y +M+   V PD  T   +L   A  G+L    K++EL +         +  A+I  YSK
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436

Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLL 373
           C     I K   +   IPEK+   W +++ 
Sbjct: 437 CK---CIDKALEVFHNIPEKDVISWTSIIA 463

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 12/137 (8%)

Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
           K + ++NAL+  Y  +G   K   +F  +  E  ++P+ VT+  ++S      L +    
Sbjct: 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWE 447

Query: 248 AFQEI-KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
            FQ + ++  + P    Y  +I         G ++E Y M++  P  P  N +  LL   
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGRE---GLLDEAYAMIRRAPFKPTVNMWAALL--- 501

Query: 307 AHSGNLPRMEKIYELVK 323
                  R+ K  EL +
Sbjct: 502 ----TACRIHKNLELGR 514

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 55/243 (22%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
           N ++S+F R   + H    F ++ + +L    F++N L+ GY  A  + +   +Y  M  
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAKAGYFDEALCLYHRMLW 180

Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
             V PD  T+  +LR      +L R  +++  V       +  ++ A+I  Y KC     
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG---D 237

Query: 350 IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME-------KSINDAFEHKTSVTT 402
           +     +   +P ++   W N ++   +   +CLE +E        S++      TSV +
Sbjct: 238 VVSARLVFDRMPRRDCISW-NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296

Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
                C +    R    +     VK   +    +C SL      MY S     E E V  
Sbjct: 297 A----CELLGDERL-GREMHGYVVKTGFAVDVSVCNSLIQ----MYLSLGSWGEAEKVFS 347

Query: 463 EME 465
            ME
Sbjct: 348 RME 350

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV 261
           VTYNTLI    +   V+     F+E+K+  + P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
           N H K + ++N LL  Y+ +G       LF  +  E+ ++P  VT+ +L+    R  +V 
Sbjct: 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM-VESGVNPDEVTFISLLCACSRSGMVT 606

Query: 244 HMEAAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
                F  +++  +++PN+  Y  ++     A   GK+ E Y  +   P+ PD   +  L
Sbjct: 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRA---GKLTEAYNFINKMPITPDPAVWGAL 663

Query: 303 LRG 305
           L  
Sbjct: 664 LNA 666

Length = 857

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	513
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.85
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.81
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.81
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.81
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.81
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.81
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.8
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.76
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.75
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.72
PRK14574	822	hmsH outer membrane protein; Provisional	99.71
PRK14574	822	hmsH outer membrane protein; Provisional	99.69
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.64
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.6
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.59
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.59
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.59
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.59
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.58
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.57
KOG2003	840	consensus TPR repeat-containing protein [General f	99.56
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.53
KOG1126	638	consensus DNA-binding cell division cycle control	99.52
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.52
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.51
KOG2076	895	consensus RNA polymerase III transcription factor	99.5
KOG1126	638	consensus DNA-binding cell division cycle control	99.49
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.49
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.47
KOG2076	895	consensus RNA polymerase III transcription factor	99.47
PF13041	50	PPR_2: PPR repeat family	99.46
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.46
PF13041	50	PPR_2: PPR repeat family	99.45
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.45
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.41
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.38
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.37
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.36
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.35
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.33
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.31
PRK12370	553	invasion protein regulator; Provisional	99.31
PRK12370	553	invasion protein regulator; Provisional	99.29
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.27
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.26
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.26
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.23
KOG2003	840	consensus TPR repeat-containing protein [General f	99.22
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.19
KOG1129	478	consensus TPR repeat-containing protein [General f	99.17
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.11
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.08
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.08
PRK11189	296	lipoprotein NlpI; Provisional	99.07
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.07
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.07
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.06
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.05
KOG1129	478	consensus TPR repeat-containing protein [General f	99.03
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.02
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.99
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.97
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.97
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.96
PRK11189	296	lipoprotein NlpI; Provisional	98.95
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.93
PF12854	34	PPR_1: PPR repeat	98.91
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.9
PF12854	34	PPR_1: PPR repeat	98.88
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.8
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.79
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.78
PRK04841	903	transcriptional regulator MalT; Provisional	98.77
KOG1125	579	consensus TPR repeat-containing protein [General f	98.7
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.69
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.65
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.61
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.58
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.57
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.57
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.56
KOG1125	579	consensus TPR repeat-containing protein [General f	98.56
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.55
PLN02789	320	farnesyltranstransferase	98.55
PRK04841	903	transcriptional regulator MalT; Provisional	98.54
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.54
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.52
PLN02789	320	farnesyltranstransferase	98.51
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.51
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.5
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.5
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.5
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.49
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.49
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.44
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.43
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.41
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.41
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.4
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.39
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.38
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.37
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.37
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.36
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.36
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.33
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.33
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.32
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.31
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.29
PRK15359	144	type III secretion system chaperone protein SscB;	98.28
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.28
PRK15359	144	type III secretion system chaperone protein SscB;	98.24
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.24
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.2
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.19
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.16
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.14
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.14
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.12
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.11
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.1
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.1
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.08
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.08
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.07
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.06
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.06
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.05
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.04
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.01
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.01
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.0
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.98
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.97
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.95
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.93
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.84
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.81
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.8
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.77
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.66
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.64
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.63
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.63
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.63
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.62
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.6
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.6
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.59
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.56
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.54
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.51
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.5
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.44
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.43
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.39
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.34
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.34
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.32
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.3
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.21
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.2
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.13
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.09
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.05
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.02
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.0
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.98
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.97
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.96
PRK10803	263	tol-pal system protein YbgF; Provisional	96.94
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.92
KOG0553	304	consensus TPR repeat-containing protein [General f	96.9
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.9
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.89
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.84
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.83
KOG3941	406	consensus Intermediate in Toll signal transduction	96.83
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.82
PF12688	120	TPR_5: Tetratrico peptide repeat	96.82
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.8
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.8
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.77
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.73
KOG0553	304	consensus TPR repeat-containing protein [General f	96.73
PF12688	120	TPR_5: Tetratrico peptide repeat	96.72
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.69
PF13371	73	TPR_9: Tetratricopeptide repeat	96.66
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.63
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.59
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.58
PRK10803	263	tol-pal system protein YbgF; Provisional	96.54
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.53
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.46
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.37
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.35
PF13371	73	TPR_9: Tetratricopeptide repeat	96.3
KOG3941	406	consensus Intermediate in Toll signal transduction	96.24
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.04
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.04
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.02
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.0
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.99
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.99
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.97
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.86
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.86
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.86
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.77
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.76
PRK15331	165	chaperone protein SicA; Provisional	95.73
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.72
PRK15331	165	chaperone protein SicA; Provisional	95.71
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.69
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.66
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.6
KOG1585	308	consensus Protein required for fusion of vesicles	95.44
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.44
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.37
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.24
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.22
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.09
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.01
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.98
PF13428	44	TPR_14: Tetratricopeptide repeat	94.85
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.83
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.82
KOG4555	175	consensus TPR repeat-containing protein [Function	94.82
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.76
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.73
PF13929	292	mRNA_stabil: mRNA stabilisation	94.59
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.59
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.58
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	94.57
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.56
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.55
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.53
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.98
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.97
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.95
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.95
PF13512	142	TPR_18: Tetratricopeptide repeat	93.88
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.7
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.68
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.61
KOG4555	175	consensus TPR repeat-containing protein [Function	93.56
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.45
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	93.3
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.19
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.17
PF13428	44	TPR_14: Tetratricopeptide repeat	92.79
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.29
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.23
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.17
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	92.06
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.0
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	91.96
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.93
PF13431	34	TPR_17: Tetratricopeptide repeat	91.89
PF13512	142	TPR_18: Tetratricopeptide repeat	91.63
COG0457	291	NrfG FOG: TPR repeat [General function prediction	91.56
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.3
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.11
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.77
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.72
KOG4570	418	consensus Uncharacterized conserved protein [Funct	90.51
KOG1585	308	consensus Protein required for fusion of vesicles	90.17
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.85
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.85
PRK11906	458	transcriptional regulator; Provisional	89.53
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	89.36
PRK11906	458	transcriptional regulator; Provisional	89.2
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	89.09
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.81
KOG4570	418	consensus Uncharacterized conserved protein [Funct	88.5
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	88.42
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.19
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	87.75
PF13929	292	mRNA_stabil: mRNA stabilisation	87.39
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	87.2
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	87.0
PF14669	233	Asp_Glu_race_2: Putative aspartate racemase	86.83
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	86.81
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	86.66
PF13431	34	TPR_17: Tetratricopeptide repeat	86.47
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	86.32
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	86.21
KOG1550	552	consensus Extracellular protein SEL-1 and related	86.15
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.05
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.68
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	85.68
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	84.89
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	84.3
PRK11619	644	lytic murein transglycosylase; Provisional	84.29
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.7
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	83.53
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	83.48
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	83.01
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.26
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.72
COG0457	291	NrfG FOG: TPR repeat [General function prediction	80.69
KOG1258	577	consensus mRNA processing protein [RNA processing	80.42
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.32
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	80.1
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	80.09
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	80.09

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.1e-60  Score=495.13  Aligned_cols=408  Identities=16%  Similarity=0.154  Sum_probs=361.1

Q ss_pred             HhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhccc
Q 010320           92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI  169 (513)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~  169 (513)
                      .+++.+...+++.++..+.      .||..+|+.+|.+|+  ++.+.|.++|+.|.+.   |+.||..+|+.+|.+|++.
T Consensus       415 ~~~~~g~~~eAl~lf~~M~------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~---Gl~pD~~tynsLI~~y~k~  485 (1060)
T PLN03218        415 ACKKQRAVKEAFRFAKLIR------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA---GLKADCKLYTTLISTCAKS  485 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHcC------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhC
Confidence            3455666777777777764      389999999999995  4778899999988774   5889999999999999999


Q ss_pred             CCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010320          170 NNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA  248 (513)
Q Consensus       170 g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~  248 (513)
                      |++++|.++|++|.+.|+ ||..+|+.||.+|++.|++++|+++|++|.+. |+.||..+|+.||.+|++.|++++|.++
T Consensus       486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~l  564 (1060)
T PLN03218        486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDV  564 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999998 59999999999999999999999999999975 9999999999999999999999999999


Q ss_pred             HHHHHH--CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010320          249 FQEIKD--SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       249 ~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                      |++|.+  .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus       565 f~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G  644 (1060)
T PLN03218        565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG  644 (1060)
T ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            999986  678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010320          327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR  404 (513)
Q Consensus       327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  404 (513)
                      +.||..+|+.+|++|++.|++++|.++++.+.+   .+..+.  +++.+|.+|++.|++++|.++|++|...+..| +..
T Consensus       645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k---~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvv  720 (1060)
T PLN03218        645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARK---QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVS  720 (1060)
T ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHH
Confidence            999999999999999999988877666665554   333332  35679999999999999999999998876655 577


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA  484 (513)
Q Consensus       405 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  484 (513)
                      +|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.
T Consensus       721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~  800 (1060)
T PLN03218        721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL  800 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999986543


Q ss_pred             h----c-------------------CCHhHHHHHHHHHHHCCCCCCCCCCCC
Q 010320          485 T----C-------------------GQRRKVNQVLGLMCKNGYDVPVNAFPS  513 (513)
Q Consensus       485 ~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~S  513 (513)
                      +    +                   +..++|..+|++|++.|+.||..||++
T Consensus       801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~  852 (1060)
T PLN03218        801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ  852 (1060)
T ss_pred             HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence            2    1                   224679999999999999999988863

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.5e-60  Score=489.85  Aligned_cols=416  Identities=15%  Similarity=0.156  Sum_probs=372.4

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHH
Q 010320           84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTK  161 (513)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  161 (513)
                      .+..++..++ +.++..++++++++|.... -..++...+..++..|+  +..+.|..+|+.|.       .||..+|+.
T Consensus       372 ~~~~~y~~l~-r~G~l~eAl~Lfd~M~~~g-vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~pd~~Tyn~  442 (1060)
T PLN03218        372 EYIDAYNRLL-RDGRIKDCIDLLEDMEKRG-LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------NPTLSTFNM  442 (1060)
T ss_pred             HHHHHHHHHH-HCcCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------CCCHHHHHH
Confidence            3445555554 3444455555555553221 13467777888888884  46778888887663       289999999


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL  240 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g  240 (513)
                      +|.+|++.|+++.|.++|++|.+.|+. |..+|++||.+|++.|++++|.++|++|.+. |+.||..||++||.+|++.|
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G  521 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAG  521 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCc
Confidence            999999999999999999999999984 9999999999999999999999999999986 99999999999999999999


Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010320          241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA--GPVMPDTNTYLLLLRGYAHSGNLPRMEKI  318 (513)
Q Consensus       241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~  318 (513)
                      ++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|..  .|+.||..+|++||.+|++.|++++|.++
T Consensus       522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el  601 (1060)
T PLN03218        522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV  601 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999976  68999999999999999999999999999


Q ss_pred             HHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010320          319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKEDCLEEMEKSINDAFEH  396 (513)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~  396 (513)
                      |+.|.+.|+.|+..+|+.+|.+|++.|++++|.+++   .+|...++.+.  +++.++.+|++.|++++|.++|++|.+.
T Consensus       602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf---~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~  678 (1060)
T PLN03218        602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY---DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ  678 (1060)
T ss_pred             HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999888665554   45555555444  4668999999999999999999999998


Q ss_pred             CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010320          397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF  476 (513)
Q Consensus       397 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  476 (513)
                      +..+ +..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus       679 G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty  757 (1060)
T PLN03218        679 GIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY  757 (1060)
T ss_pred             CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence            7665 577899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCCC
Q 010320          477 WIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS  513 (513)
Q Consensus       477 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~S  513 (513)
                      +.++.+|++.|++++|.+++++|.+.|+.||..+|++
T Consensus       758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns  794 (1060)
T PLN03218        758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC  794 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            9999999999999999999999999999999988864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.6e-57  Score=468.93  Aligned_cols=405  Identities=11%  Similarity=0.136  Sum_probs=347.1

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCCCCHHHHHH
Q 010320           84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGS--RPRLALEVLNWRRRQAGYGTPMTKEEYTK  161 (513)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~--~~~~a~~~~~~~~~~~~~g~~~~~~~~~~  161 (513)
                      .+..++..+ .+.+...++++++..+.... +..||..+|+.++.+|++  ..+.+.+++..|.+.   |+.||..+|+.
T Consensus        89 ~~~~~i~~l-~~~g~~~~Al~~f~~m~~~~-~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~---g~~~~~~~~n~  163 (697)
T PLN03081         89 SLCSQIEKL-VACGRHREALELFEILEAGC-PFTLPASTYDALVEACIALKSIRCVKAVYWHVESS---GFEPDQYMMNR  163 (697)
T ss_pred             eHHHHHHHH-HcCCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCcchHHHHH
Confidence            455666665 34455556666665553211 356899999999999954  677788999888774   48899999999


Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----------------
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----------------  225 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----------------  225 (513)
                      ++.+|++.|++++|.++|++|.+   +|..+||++|.+|++.|++++|+++|++|.+. |+.||                
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~  239 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGS  239 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCc
Confidence            99999999999999999999976   58899999999999999999999999999764 55555                


Q ss_pred             -------------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010320          226 -------------------IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM  286 (513)
Q Consensus       226 -------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (513)
                                         ..+||+||++|++.|++++|.++|++|.+    +|..+||.||.+|++.|++++|+++|++
T Consensus       240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~  315 (697)
T PLN03081        240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE  315 (697)
T ss_pred             HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence                               44557788889999999999999999964    6899999999999999999999999999


Q ss_pred             HHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc
Q 010320          287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR  366 (513)
Q Consensus       287 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  366 (513)
                      |.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.+|..+|++||++|+++|++++|   .++|++|..++..
T Consensus       316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A---~~vf~~m~~~d~~  392 (697)
T PLN03081        316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA---RNVFDRMPRKNLI  392 (697)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH---HHHHHhCCCCCee
Confidence            9999999999999999999999999999999999999999999999999999999999977755   4556677778877


Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCcccHhhHHHHH
Q 010320          367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-AGWRLCRSLYHSKM  445 (513)
Q Consensus       367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~li  445 (513)
                      +| + .||.+|++.|+.++|.++|++|.+.|..| +..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|
T Consensus       393 t~-n-~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li  469 (697)
T PLN03081        393 SW-N-ALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI  469 (697)
T ss_pred             eH-H-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence            77 3 69999999999999999999999887766 577899999999999999999999999975 69999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-CCCCC
Q 010320          446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP-VNAFP  512 (513)
Q Consensus       446 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~  512 (513)
                      ++|++.|++++|.+++++|   ++.|+..+|++|+.+|...|+++.|.++++++.  ++.|+ ..+|+
T Consensus       470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~  532 (697)
T PLN03081        470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYV  532 (697)
T ss_pred             HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchH
Confidence            9999999999999998876   478999999999999999999999999999986  44554 44553

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=9.8e-56  Score=455.77  Aligned_cols=371  Identities=12%  Similarity=0.133  Sum_probs=316.8

Q ss_pred             cccCchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc------
Q 010320          115 RRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH------  186 (513)
Q Consensus       115 ~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------  186 (513)
                      |..||..+|+.++..++  +..+.|.++|+.|.       .||..+|+.++.+|++.|++++|.++|++|.+.|      
T Consensus       153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~  225 (697)
T PLN03081        153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR  225 (697)
T ss_pred             CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence            44566677777776664  35566666666552       2466666666666666666666666666665544      


Q ss_pred             -----------------------------C-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320          187 -----------------------------L-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       187 -----------------------------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                                                   . +|..+||+||.+|++.|++++|.++|++|.     .+|..+||++|.+|
T Consensus       226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y  300 (697)
T PLN03081        226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGY  300 (697)
T ss_pred             hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHH
Confidence                                         3 256678999999999999999999999996     36999999999999


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010320          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME  316 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~  316 (513)
                      ++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..+|+.|+.+|++.|++++|.
T Consensus       301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~  380 (697)
T PLN03081        301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR  380 (697)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320          317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKEDCLEEMEKSINDAF  394 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~  394 (513)
                      ++|++|.+    +|..+||+||.+|++.|+.++|.++++   +|...+..|.  ++..++.+|++.|.+++|.++|++|.
T Consensus       381 ~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~---~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~  453 (697)
T PLN03081        381 NVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE---RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS  453 (697)
T ss_pred             HHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            99999975    688999999999999998776655554   4444455444  35589999999999999999999998


Q ss_pred             hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010320          395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK  474 (513)
Q Consensus       395 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  474 (513)
                      +.....|+..+|+.++++|++.|++++|.+++++|   ++.|+..+|++|+.+|...|+++.|..+++++.+.+ +.+..
T Consensus       454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~  529 (697)
T PLN03081        454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLN  529 (697)
T ss_pred             HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCc
Confidence            86555556788999999999999999999998865   688999999999999999999999999999997654 33578


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010320          475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV  508 (513)
Q Consensus       475 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  508 (513)
                      +|..|+..|++.|++++|.+++++|++.|++...
T Consensus       530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~  563 (697)
T PLN03081        530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP  563 (697)
T ss_pred             chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence            9999999999999999999999999999997543

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=9.5e-56  Score=466.56  Aligned_cols=383  Identities=17%  Similarity=0.183  Sum_probs=280.8

Q ss_pred             ccCchhHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHH
Q 010320          116 RHSNGYAFVELMKQLGS--RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY  193 (513)
Q Consensus       116 ~~p~~~~~~~~l~~~~~--~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  193 (513)
                      ..||.++|+.++++|++  ....+.+++..+.+   .|+.||..+|+.||.+|++.|++++|.++|++|.+   +|..+|
T Consensus       183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~  256 (857)
T PLN03077        183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR---FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISW  256 (857)
T ss_pred             CCCChhHHHHHHHHhCCccchhhHHHHHHHHHH---cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchh
Confidence            34455555444444432  22233344443333   24566666777888888888888888888888875   477888


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--------------
Q 010320          194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP--------------  259 (513)
Q Consensus       194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--------------  259 (513)
                      |++|.+|++.|++++|+++|++|... |+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.|              
T Consensus       257 n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k  335 (857)
T PLN03077        257 NAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS  335 (857)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence            88888888888888888888888864 777776666666666666555555555555555555544              


Q ss_pred             -----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010320          260 -----------------NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV  322 (513)
Q Consensus       260 -----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~  322 (513)
                                       |..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|
T Consensus       336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~  415 (857)
T PLN03077        336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA  415 (857)
T ss_pred             cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence                             455556666666666777777777777888888888888888888888888888888888888


Q ss_pred             HhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010320          323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT  402 (513)
Q Consensus       323 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  402 (513)
                      .+.|..++..+|++||++|++.|++++   +.++|++|.+++..+|.  .+|.+|++.|+.++|.++|++|...  ..|+
T Consensus       416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~---A~~vf~~m~~~d~vs~~--~mi~~~~~~g~~~eA~~lf~~m~~~--~~pd  488 (857)
T PLN03077        416 ERKGLISYVVVANALIEMYSKCKCIDK---ALEVFHNIPEKDVISWT--SIIAGLRLNNRCFEALIFFRQMLLT--LKPN  488 (857)
T ss_pred             HHhCCCcchHHHHHHHHHHHHcCCHHH---HHHHHHhCCCCCeeeHH--HHHHHHHHCCCHHHHHHHHHHHHhC--CCCC
Confidence            888888888999999999999997775   45556778888887773  6999999999999999999999863  4556


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc------------------------------ccHhhHHHHHHHHHhcC
Q 010320          403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR------------------------------LCRSLYHSKMVMYASQR  452 (513)
Q Consensus       403 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------------------------p~~~~~~~li~~~~~~g  452 (513)
                      ..+|+.++.+|++.|+++.+.+++..+.+.|+.                              +|..+||++|.+|++.|
T Consensus       489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G  568 (857)
T PLN03077        489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHG  568 (857)
T ss_pred             HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence            778888888777777777777777776666654                              45566667777777777


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCCCCCCCCC
Q 010320          453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC-KNGYDVPVNAFP  512 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~  512 (513)
                      +.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+
T Consensus       569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~  629 (857)
T PLN03077        569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA  629 (857)
T ss_pred             CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence            777777777777777777777777777777777777777777777776 567777776664

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.3e-54  Score=457.98  Aligned_cols=428  Identities=14%  Similarity=0.125  Sum_probs=348.8

Q ss_pred             hhhhhhcccCCCCCChhhhhh-h----HHHHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHc--C
Q 010320           60 PTLVRLLSETLTYPDARVRKD-L----TQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--S  132 (513)
Q Consensus        60 ~~l~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--~  132 (513)
                      +.++..+.+.+....+....+ +    ..+++.++..+ .+.+...++++++.++..  .+..||..+|+.++.+|+  +
T Consensus       226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~-~~~g~~~eAl~lf~~M~~--~g~~Pd~~ty~~ll~a~~~~g  302 (857)
T PLN03077        226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY-FENGECLEGLELFFTMRE--LSVDPDLMTITSVISACELLG  302 (857)
T ss_pred             hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHH-HhCCCHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHhcC
Confidence            667777777766555444322 1    13456677766 444555666666666632  256889999999999885  4


Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010320          133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL  212 (513)
Q Consensus       133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  212 (513)
                      +.+.|.+++..+.+.   |+.||..+|+.||.+|++.|++++|.++|++|..   +|..+||++|.+|++.|++++|+++
T Consensus       303 ~~~~a~~l~~~~~~~---g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~l  376 (857)
T PLN03077        303 DERLGREMHGYVVKT---GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALET  376 (857)
T ss_pred             ChHHHHHHHHHHHHh---CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHH
Confidence            677788888888764   4888999999999999999999999999999875   4888999999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC
Q 010320          213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV  292 (513)
Q Consensus       213 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  292 (513)
                      |++|.+. |+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+||.||.+|++.|++++|.++|++|.+   
T Consensus       377 f~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---  452 (857)
T PLN03077        377 YALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---  452 (857)
T ss_pred             HHHHHHh-CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---
Confidence            9999876 899999999999999999999999999999999999999999999999999999999999999998865   


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHH
Q 010320          293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL  372 (513)
Q Consensus       293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  372 (513)
                       +|..+|+.+|.+|++.|+.++|.++|++|.+ +..||..+|+.++.+|++.|.++.+.+++..+.+..-... ...++.
T Consensus       453 -~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~-~~~~na  529 (857)
T PLN03077        453 -KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD-GFLPNA  529 (857)
T ss_pred             -CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc-ceechH
Confidence             5777888888888888888888888888875 4788888888888888888888877777666555332221 222446


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  452 (513)
                      ++.+|++.|++++|.++|+++      .++..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus       530 Li~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g  603 (857)
T PLN03077        530 LLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG  603 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence            888899999999998888876      23567899999999999999999999999988888999999999999999999


Q ss_pred             CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCC
Q 010320          453 RVEEMESVLKEME-NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFP  512 (513)
Q Consensus       453 ~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  512 (513)
                      ++++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++|   .++||..+|+
T Consensus       604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~  661 (857)
T PLN03077        604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWG  661 (857)
T ss_pred             hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHH
Confidence            9999999999988 6788899999999999999999999999888887   3778877764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=4.8e-22  Score=214.55  Aligned_cols=332  Identities=11%  Similarity=0.033  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      ...+..+...|.+.|++++|.++++.+.+..+.+...|..+..+|...|++++|++.|+++.+.  .+.+...+..+..+
T Consensus       567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~  644 (899)
T TIGR02917       567 IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADA  644 (899)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence            3334444444444444444444444444433334444444444444455555555555444432  12233444444444


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010320          236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a  315 (513)
                      +.+.|++++|..+|+++.+... .+..+|..+...+...|++++|.++++.+.+.+ ..+...+..+...+...|++++|
T Consensus       645 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A  722 (899)
T TIGR02917       645 YAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA  722 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence            4445555555555554444321 134444445555555555555555555554433 22344444555555555555555


Q ss_pred             HHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE  395 (513)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  395 (513)
                      .+.|+.+.+.+  |+..++..+..++.+.|++++|.+.++.+.+..+.+...  ...+...|...|++++|.++|+++.+
T Consensus       723 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~  798 (899)
T TIGR02917       723 IQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL--RTALAELYLAQKDYDKAIKHYRTVVK  798 (899)
T ss_pred             HHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            55555555432  222344445555555555555544444333332222211  22355555566666666666666655


Q ss_pred             cCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010320          396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKT  475 (513)
Q Consensus       396 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~  475 (513)
                      ..  |.+..+++.+...+...|+ .+|+++++++.+... -+..++..+...+...|++++|..+|+++.+.+. .+..+
T Consensus       799 ~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~  873 (899)
T TIGR02917       799 KA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAI  873 (899)
T ss_pred             hC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHH
Confidence            32  3344555666666666666 556666666554332 1344455566666777777777777777776653 36677


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          476 FWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       476 ~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +..+..++.+.|++++|.+++++|+
T Consensus       874 ~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       874 RYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            7777777777777777777777765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.93  E-value=2.7e-21  Score=208.69  Aligned_cols=356  Identities=10%  Similarity=-0.000  Sum_probs=239.7

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010320          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS  211 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  211 (513)
                      ++++.|.+.++.+...    .+.+..++..+...+.+.|+.++|..+|+++.+.++.+...+..++..|.+.|++++|.+
T Consensus       513 g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  588 (899)
T TIGR02917       513 GNPDDAIQRFEKVLTI----DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA  588 (899)
T ss_pred             CCHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHH
Confidence            4555566665555442    133555666666666666666666666666665554455666666666666667777777


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010320          212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      +++.+...  .+.+..+|..+..++.+.|++++|...|+++.+... .+...+..+..++.+.|++++|.++|+++.+..
T Consensus       589 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  665 (899)
T TIGR02917       589 ILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK  665 (899)
T ss_pred             HHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            76666642  345566677777777777777777777777765432 245566666777777777777777777766532


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010320          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV  371 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  371 (513)
                       +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.++......... ..  ..
T Consensus       666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~--~~  740 (899)
T TIGR02917       666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QN--AI  740 (899)
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hH--HH
Confidence             2236667777777777777777777777776653 3455566667777777777777666665554443333 11  22


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  451 (513)
                      .+..++...|++++|.+.+.++.+.  .|.+...+..+...|...|++++|.++|+++.+... .+...++.+...+...
T Consensus       741 ~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~  817 (899)
T TIGR02917       741 KLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLEL  817 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence            4677777788888888888777764  344566777778888888888888888888876553 4667777788888888


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010320          452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  504 (513)
                      |+ .+|+.+++++.+.. +-+..++..+...+...|++++|.++++++.+.+.
T Consensus       818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            88 77888888877654 34556677888888889999999999999888764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=4e-21  Score=186.31  Aligned_cols=301  Identities=14%  Similarity=0.076  Sum_probs=208.9

Q ss_pred             HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 010320          165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---IVTYNTLISVFGRLLL  241 (513)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~  241 (513)
                      .+...|++++|...|+++.+.++.+..++..+...+...|++++|..+++.+... +..++   ...+..+...|.+.|+
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g~  122 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAGL  122 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCCC
Confidence            4456677777888888777766556677777777777777777787777777653 21111   2456677777777777


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChHHHHH
Q 010320          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGNLPRMEK  317 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~  317 (513)
                      ++.|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+-.++    ...+..+...+.+.|++++|.+
T Consensus       123 ~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  201 (389)
T PRK11788        123 LDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA  201 (389)
T ss_pred             HHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            7777777777775432 3566777777777777777777777777766442221    1234455556666677777777


Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010320          318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK  397 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  397 (513)
                      +++++.+.. +.+...+                                    ..+...+.+.|++++|.++|+++....
T Consensus       202 ~~~~al~~~-p~~~~~~------------------------------------~~la~~~~~~g~~~~A~~~~~~~~~~~  244 (389)
T PRK11788        202 LLKKALAAD-PQCVRAS------------------------------------ILLGDLALAQGDYAAAIEALERVEEQD  244 (389)
T ss_pred             HHHHHHhHC-cCCHHHH------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            776665532 1111111                                    136667777788888888888777643


Q ss_pred             CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320          398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW  477 (513)
Q Consensus       398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~  477 (513)
                      ... ...+++.++.+|...|++++|.+.++++.+..  |+...+..++..+.+.|++++|..+++++.+.  .|+..+++
T Consensus       245 p~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~  319 (389)
T PRK11788        245 PEY-LSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH  319 (389)
T ss_pred             hhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence            221 23457778888888999999999988887654  55566678888888999999999999888765  47888888


Q ss_pred             HHHHHHHh---cCCHhHHHHHHHHHHHCCCCCCCC
Q 010320          478 IMYYAYAT---CGQRRKVNQVLGLMCKNGYDVPVN  509 (513)
Q Consensus       478 ~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~  509 (513)
                      .++..+..   .|+.+++..++++|.+.+++|++.
T Consensus       320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            88877764   558888999999999888887764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=5e-20  Score=178.66  Aligned_cols=303  Identities=13%  Similarity=0.066  Sum_probs=227.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC----HhHHHHHHHH
Q 010320          124 VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT----IGTYNALLGA  199 (513)
Q Consensus       124 ~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~  199 (513)
                      ..+.....++.+.|...|+.+.+..    +.+..++..+...+.+.|++++|.++++.+...+..+    ...+..+...
T Consensus        41 ~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~  116 (389)
T PRK11788         41 KGLNFLLNEQPDKAIDLFIEMLKVD----PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD  116 (389)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            4444555788999999999988742    3467789999999999999999999999998764322    3578899999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcc
Q 010320          200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTAW  275 (513)
Q Consensus       200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g  275 (513)
                      |.+.|++++|..+|+++.+.  -+.+..+++.++..+.+.|++++|.+.++++.+.+..++.    ..|..+...+.+.|
T Consensus       117 ~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  194 (389)
T PRK11788        117 YLKAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG  194 (389)
T ss_pred             HHHCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999863  3557789999999999999999999999999986644322    24566778889999


Q ss_pred             CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010320          276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA  355 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  355 (513)
                      ++++|.++|+++.+.. ..+...+..+...+.+.|++++|.++++++.+.+......+++.                   
T Consensus       195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~-------------------  254 (389)
T PRK11788        195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK-------------------  254 (389)
T ss_pred             CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH-------------------
Confidence            9999999999998743 22467888899999999999999999999887532211222333                   


Q ss_pred             HHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Q 010320          356 LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR  435 (513)
Q Consensus       356 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  435 (513)
                                       ++.+|...|++++|...++++.+...  . ...+..++..+.+.|++++|..+++++.+.  .
T Consensus       255 -----------------l~~~~~~~g~~~~A~~~l~~~~~~~p--~-~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~  312 (389)
T PRK11788        255 -----------------LMECYQALGDEAEGLEFLRRALEEYP--G-ADLLLALAQLLEEQEGPEAAQALLREQLRR--H  312 (389)
T ss_pred             -----------------HHHHHHHcCCHHHHHHHHHHHHHhCC--C-chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--C
Confidence                             45555666666666666666665422  2 223466777777777777777777776654  4


Q ss_pred             ccHhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 010320          436 LCRSLYHSKMVMYAS---QRRVEEMESVLKEMENYKIDCSKK  474 (513)
Q Consensus       436 p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~  474 (513)
                      |+...++.++..+..   .|+.+++..++++|.++++.|++.
T Consensus       313 P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        313 PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            666677766666554   447777777777777766666554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=7e-18  Score=171.75  Aligned_cols=323  Identities=6%  Similarity=-0.063  Sum_probs=254.5

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++++.|+.+++.+...    .+-+...+..++.++...|++++|.+.|+++.+..+.+...|..+...+...|++++|+
T Consensus        55 ~g~~~~A~~l~~~~l~~----~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai  130 (656)
T PRK15174         55 KDETDVGLTLLSDRVLT----AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA  130 (656)
T ss_pred             cCCcchhHHHhHHHHHh----CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence            67888999998877664    33356667777777788999999999999999987778889999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320          211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      +.|++..+.  -+.+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|..+++.+.+.
T Consensus       131 ~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~  206 (656)
T PRK15174        131 DLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPF  206 (656)
T ss_pred             HHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence            999999864  2345678888999999999999999999988765443 33334333 3478899999999999998775


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCcc
Q 010320          291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR----IKKIEALMRLIPEKEYR  366 (513)
Q Consensus       291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~  366 (513)
                      .-.++...+..+..++...|++++|...++...+.. +.+...+..+...|...|++++    |...++...+..+....
T Consensus       207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~  285 (656)
T PRK15174        207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR  285 (656)
T ss_pred             CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH
Confidence            433445556666788899999999999999998764 4567788889999999999885    55555555555444443


Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH-hhHHHHH
Q 010320          367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR-SLYHSKM  445 (513)
Q Consensus       367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~li  445 (513)
                      .+  ..+...+...|++++|...+++.+..  .|.+...+..+...+...|++++|.+.++.+.+..  |+. ..+..+.
T Consensus       286 a~--~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a  359 (656)
T PRK15174        286 IV--TLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAA  359 (656)
T ss_pred             HH--HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence            33  25888899999999999999998884  35556667788899999999999999999887654  333 3344456


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCC
Q 010320          446 VMYASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       446 ~~~~~~g~~~~A~~~~~~m~~~~  468 (513)
                      .++...|+.++|...|++..+..
T Consensus       360 ~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        360 AALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC
Confidence            77889999999999999988754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=3.2e-17  Score=167.51  Aligned_cols=359  Identities=9%  Similarity=-0.064  Sum_probs=278.7

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++++.|...|+....     ..|+...|..+..+|.+.|++++|++.++...+..+.+...|..+..+|...|++++|+
T Consensus       140 ~~~~~~Ai~~y~~al~-----~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~  214 (615)
T TIGR00990       140 NKDFNKAIKLYSKAIE-----CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL  214 (615)
T ss_pred             cCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            3688899999988765     45678889999999999999999999999999887778889999999999999999998


Q ss_pred             HHHHHHHHhCCC---------------------------CC----CHHHHHHH---------------------------
Q 010320          211 SLFRDLKKEANI---------------------------SP----SIVTYNTL---------------------------  232 (513)
Q Consensus       211 ~~~~~m~~~~g~---------------------------~p----~~~~~~~l---------------------------  232 (513)
                      .-|.......+.                           .|    ........                           
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (615)
T TIGR00990       215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ  294 (615)
T ss_pred             HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence            766544321110                           00    00000000                           


Q ss_pred             HHHH------HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHH
Q 010320          233 ISVF------GRLLLVDHMEAAFQEIKDSN-LSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLL  303 (513)
Q Consensus       233 i~~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll  303 (513)
                      +...      ...+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..|++..+.  .|+ ...|..+.
T Consensus       295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la  372 (615)
T TIGR00990       295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRA  372 (615)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHH
Confidence            0000      12257889999999998764 223 4567888888999999999999999999874  455 66888999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010320          304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL  383 (513)
Q Consensus       304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  383 (513)
                      ..+...|++++|...|+...+.. +.+..+|..+...+...|++++|...++...++.+.....+.  .+...+.+.|++
T Consensus       373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~--~la~~~~~~g~~  449 (615)
T TIGR00990       373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI--QLGVTQYKEGSI  449 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH--HHHHHHHHCCCH
Confidence            99999999999999999998863 456788899999999999999999988887777666555543  478888999999


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh------hHHHHHHHHHhcCCHHHH
Q 010320          384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS------LYHSKMVMYASQRRVEEM  457 (513)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~g~~~~A  457 (513)
                      ++|+..|++.+..  .|.+...++.+...+...|++++|.+.|++..+.....+..      .++.....+...|++++|
T Consensus       450 ~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA  527 (615)
T TIGR00990       450 ASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA  527 (615)
T ss_pred             HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence            9999999998874  45567778899999999999999999999987654321111      122222334457999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+++++....+ +.+...+..+...+.+.|++++|+++|++..+.
T Consensus       528 ~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       528 ENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            99999988765 345567889999999999999999999987654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.85  E-value=5.5e-17  Score=165.28  Aligned_cols=290  Identities=10%  Similarity=-0.013  Sum_probs=201.2

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++.+.|.+.++.+...    .|-+...+..+...+.+.|++++|.+.+++..+..+.+...+..+...+...|++++|.
T Consensus        89 ~g~~~~A~~~l~~~l~~----~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~  164 (656)
T PRK15174         89 SSQPDAVLQVVNKLLAV----NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAI  164 (656)
T ss_pred             cCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHH
Confidence            56777888888777653    23456677777778888888888888888887766557778888888888888888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320          211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      ..++.+...  .+.+...+..+ ..+...|++++|+..++.+.+....++...+..+...+.+.|++++|+..|++..+.
T Consensus       165 ~~~~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~  241 (656)
T PRK15174        165 SLARTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR  241 (656)
T ss_pred             HHHHHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            888877653  12233333333 346777888888888888776543344455555667777888888888888887764


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc
Q 010320          291 PVMPDTNTYLLLLRGYAHSGNLPR----MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR  366 (513)
Q Consensus       291 g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  366 (513)
                      . .-+...+..+...+...|++++    |...|+...+.. +.+...+..+...+.+.|++++|...++......+....
T Consensus       242 ~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~  319 (656)
T PRK15174        242 G-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY  319 (656)
T ss_pred             C-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            3 2246677777788888888775    677888777653 346667778888888888888777776666665444333


Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010320          367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG  433 (513)
Q Consensus       367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  433 (513)
                      .+  ..+...+...|++++|...|+++.....  .+...+..+..++...|+.++|.+.|++..+..
T Consensus       320 a~--~~La~~l~~~G~~~eA~~~l~~al~~~P--~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        320 VR--AMYARALRQVGQYTAASDEFVQLAREKG--VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HH--HHHHHHHHHCCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            33  2467777888888888888887776432  233334445566777888888888888776543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.81  E-value=3.8e-15  Score=162.30  Aligned_cols=328  Identities=8%  Similarity=-0.013  Sum_probs=198.3

Q ss_pred             HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 010320          165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH  244 (513)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~  244 (513)
                      .+.+.|++++|.+.|++..+..+.+...+..+...+...|++++|++.|++..+.  .+.+...+..+...+. .++.++
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~  436 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEK  436 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHH
Confidence            3455666666666666666655445556666666666666666666666666543  1222333333333332 122333


Q ss_pred             HHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 010320          245 MEAAFQEIKDSNL--------SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       245 A~~~~~~m~~~g~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a  315 (513)
                      |+.+++.+.....        ......+..+...+...|++++|++.|++..+.  .|+ ...+..+...|.+.|++++|
T Consensus       437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            3333332211000        000122344555566666666666666666553  232 44555566666666666666


Q ss_pred             HHHHHHHHhccCCCcHHHHH--------------------------------------------HHHHHHHhcCChhHHH
Q 010320          316 EKIYELVKHHVDGKEFPLIR--------------------------------------------AMICAYSKCSVTDRIK  351 (513)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~--------------------------------------------~li~~~~~~g~~~~a~  351 (513)
                      ...++++.+.. +.+...+.                                            .+...+...|+.++|.
T Consensus       515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~  593 (1157)
T PRK11447        515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE  593 (1157)
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence            66666655432 11222222                                            2233444555555444


Q ss_pred             HHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010320          352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES  431 (513)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  431 (513)
                      ++++   . .+.+...  ...+...+.+.|++++|++.|++.++.  .|.+...+..+...+...|+.++|++.++.+.+
T Consensus       594 ~~l~---~-~p~~~~~--~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        594 ALLR---Q-QPPSTRI--DLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             HHHH---h-CCCCchH--HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            4433   1 1122222  235788889999999999999999884  455677788999999999999999999998775


Q ss_pred             cCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCC
Q 010320          432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI--DC---SKKTFWIMYYAYATCGQRRKVNQVLGLMC-KNGYD  505 (513)
Q Consensus       432 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~  505 (513)
                      ... .+...+..+..++...|++++|.++++++....-  .|   +...+..+...+...|++++|++.|++.. ..|+.
T Consensus       666 ~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~  744 (1157)
T PRK11447        666 TAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT  744 (1157)
T ss_pred             cCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence            432 2455566777888899999999999999886532  22   23466677888999999999999998874 45565


Q ss_pred             CC
Q 010320          506 VP  507 (513)
Q Consensus       506 p~  507 (513)
                      |.
T Consensus       745 ~~  746 (1157)
T PRK11447        745 PT  746 (1157)
T ss_pred             CC
Confidence            44

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=1.7e-15  Score=135.40  Aligned_cols=342  Identities=15%  Similarity=0.165  Sum_probs=228.7

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN  230 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~  230 (513)
                      .+-+..+|..+|.++++--..+.|.+++++-.....+ +..+||.+|.+-.-...    .+++.+|... .+.||..|+|
T Consensus       203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq-km~Pnl~TfN  277 (625)
T KOG4422|consen  203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ-KMTPNLFTFN  277 (625)
T ss_pred             cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh-hcCCchHhHH
Confidence            3447778888888888888888888888887776555 88888888876544332    6788888876 7888888999


Q ss_pred             HHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHc----CCCCC----CHH
Q 010320          231 TLISVFGRLLLVDH----MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKA----GPVMP----DTN  297 (513)
Q Consensus       231 ~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~p----~~~  297 (513)
                      +++++..+.|+++.    |.+++.+|++.|++|...+|..+|..+++.++..+ |..++.++..    +-++|    |..
T Consensus       278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~  357 (625)
T KOG4422|consen  278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK  357 (625)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence            98888888887764    45778888888888888888888888888877654 4444444433    22332    467


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc----cCCCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch-
Q 010320          298 TYLLLLRGYAHSGNLPRMEKIYELVKHH----VDGKEF---PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL-  369 (513)
Q Consensus       298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-  369 (513)
                      .|...+..|.+..+.+-|.++..-....    .+.|+.   ..|..+..+.|+..   .....+..+..+.+.-+.+.. 
T Consensus       358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e---s~~~~~~~Y~~lVP~~y~p~~~  434 (625)
T KOG4422|consen  358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME---SIDVTLKWYEDLVPSAYFPHSQ  434 (625)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccceecCCch
Confidence            7778888888888888888887766542    123332   23455666666654   334566677777766555442 


Q ss_pred             -HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC-cH--------HH-----HHHHHH-------
Q 010320          370 -NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN-AV--------DK-----LANFVK-------  427 (513)
Q Consensus       370 -~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~--------~~-----a~~~~~-------  427 (513)
                       ...++.+....|+++-.-+++..+..-|.... ..+-.-++.-+++.+ +.        ..     |..+++       
T Consensus       435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r-~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~  513 (625)
T KOG4422|consen  435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR-SDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI  513 (625)
T ss_pred             hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh-HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence             22466677777888888888888887664332 112223344444433 11        11     111111       


Q ss_pred             HHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI----DCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       428 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      +|.+..+  .....+.+.-.+.+.|+.++|.++|..+.+++-    .|......-+++...+.+....|..+++-|...+
T Consensus       514 R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  514 RQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             HHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            2333333  344567777788899999999999998865432    2334444467777788888999999998886655


Q ss_pred             C
Q 010320          504 Y  504 (513)
Q Consensus       504 ~  504 (513)
                      .
T Consensus       592 ~  592 (625)
T KOG4422|consen  592 L  592 (625)
T ss_pred             c
Confidence            4

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.81  E-value=4.4e-15  Score=161.80  Aligned_cols=329  Identities=11%  Similarity=-0.011  Sum_probs=222.0

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH------------
Q 010320          163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN------------  230 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~------------  230 (513)
                      ...+...|++++|+..|++..+..+.+...+..+...+.+.|++++|+..|++..+...-.++...|.            
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            34455667777777777777766555677777777777777777777777777665311111111111            


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHH-----------
Q 010320          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNT-----------  298 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t-----------  298 (513)
                      .....+.+.|++++|+..|++..+... .+...+..+...+...|++++|++.|++..+.  .|+ ...           
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQ  432 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence            123345567777777777777776533 24556666667777777777777777776652  222 222           


Q ss_pred             -------------------------------HHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010320          299 -------------------------------YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT  347 (513)
Q Consensus       299 -------------------------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  347 (513)
                                                     +..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.|++
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~  511 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR  511 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence                                           2223445567899999999999988763 34566778889999999999


Q ss_pred             hHHHHHHHHHHhCCCCCcccchHH------------------------------------------HHHHHHHhcCCHHH
Q 010320          348 DRIKKIEALMRLIPEKEYRPWLNV------------------------------------------LLIRVYAKEDCLEE  385 (513)
Q Consensus       348 ~~a~~~~~~~~~~~~~~~~~~~~~------------------------------------------~li~~~~~~~~~~~  385 (513)
                      ++|...++.+.+..+.+.......                                          .+...+...|+.++
T Consensus       512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e  591 (1157)
T PRK11447        512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE  591 (1157)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence            998888777665544333222100                                          11223444455555


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320          386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME  465 (513)
Q Consensus       386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  465 (513)
                      |+++++      ..|.+...+..+...+.+.|++++|++.|+++.+... .+...+..+...|...|++++|.+.++...
T Consensus       592 A~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll  664 (1157)
T PRK11447        592 AEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLP  664 (1157)
T ss_pred             HHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            555544      1233445567788889999999999999999887653 367788889999999999999999999887


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       466 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      +.. +.+..++..+..++...|++++|.++++++....
T Consensus       665 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        665 ATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             ccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            653 3455667778889999999999999999987653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=3.7e-16  Score=145.77  Aligned_cols=408  Identities=11%  Similarity=0.085  Sum_probs=301.5

Q ss_pred             hhhHHHHHHHHHHHhhcCCChhHHHHHHhhhCCccccccC-chhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCC
Q 010320           79 KDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHS-NGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMT  155 (513)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~  155 (513)
                      ++..+.+..+.+.+ +..++.+.+++....+-    ...| ....|..+-.++  .++.+.|.+.|....+     +-|+
T Consensus       113 ~q~ae~ysn~aN~~-kerg~~~~al~~y~~ai----el~p~fida~inla~al~~~~~~~~a~~~~~~alq-----lnP~  182 (966)
T KOG4626|consen  113 PQGAEAYSNLANIL-KERGQLQDALALYRAAI----ELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----LNPD  182 (966)
T ss_pred             chHHHHHHHHHHHH-HHhchHHHHHHHHHHHH----hcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----cCcc
Confidence            33444444444444 55566666666666553    2244 334566555555  4577778887776655     4455


Q ss_pred             HHHHHHHH-HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 010320          156 KEEYTKGI-KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYNTLI  233 (513)
Q Consensus       156 ~~~~~~ll-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li  233 (513)
                      .....+-+ ..+-..|++++|...|.+..+..+.=...|+.|...+-..|+...|+.-|++..+   +.|+ ...|-.|.
T Consensus       183 l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLG  259 (966)
T KOG4626|consen  183 LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLG  259 (966)
T ss_pred             hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHH
Confidence            55444433 3444579999999999988876554677899999999999999999999999985   4676 46889999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010320          234 SVFGRLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGN  311 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~  311 (513)
                      ..|...+.++.|...+.+....  .| ...+|..|...|-..|++|-|+..|++..+  +.|+ ...|+.|..++-..|+
T Consensus       260 nV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~  335 (966)
T KOG4626|consen  260 NVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGS  335 (966)
T ss_pred             HHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccc
Confidence            9999999999999999888764  34 457788888889999999999999999988  5677 7899999999999999


Q ss_pred             hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010320          312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN  391 (513)
Q Consensus       312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  391 (513)
                      +.+|...+....... +......+.|...|...|.++.|...+...-+....-..+. + -|...|-+.|++++|+..++
T Consensus       336 V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~-n-NLa~i~kqqgnl~~Ai~~Yk  412 (966)
T KOG4626|consen  336 VTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAH-N-NLASIYKQQGNLDDAIMCYK  412 (966)
T ss_pred             hHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhh-h-hHHHHHHhcccHHHHHHHHH
Confidence            999999999988863 34566778899999999999888777665544433333333 3 38889999999999999999


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010320          392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC  471 (513)
Q Consensus       392 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  471 (513)
                      +.++  ..|+....|+.+...|-..|+++.|.+.+.+.+..+.. -.+.++.|...|-..|++.+|+.-|++....  +|
T Consensus       413 ealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kP  487 (966)
T KOG4626|consen  413 EALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KP  487 (966)
T ss_pred             HHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CC
Confidence            9988  67778888999999999999999999999998865532 3567888999999999999999999998864  45


Q ss_pred             C-HHHHHHHHHHHH---hcCCH----hHHHHHHHHHHHCCCCCCCCCC
Q 010320          472 S-KKTFWIMYYAYA---TCGQR----RKVNQVLGLMCKNGYDVPVNAF  511 (513)
Q Consensus       472 ~-~~~~~~li~~~~---~~g~~----~~A~~~~~~m~~~g~~p~~~t~  511 (513)
                      | ...|--++.+.-   .-.++    ++..++.++-.+...-|++..+
T Consensus       488 DfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~  535 (966)
T KOG4626|consen  488 DFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPH  535 (966)
T ss_pred             CCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcc
Confidence            4 234444444432   22222    3334444444444455665543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.81  E-value=9.9e-15  Score=152.06  Aligned_cols=393  Identities=10%  Similarity=-0.026  Sum_probs=272.6

Q ss_pred             hcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC
Q 010320           94 ANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN  171 (513)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~  171 (513)
                      ...++..++...+.+....   ...+...+..+...+  .++.+.|..+++.....    .|.+...+..+...+...|+
T Consensus        26 ~~~g~~~~A~~~~~~~~~~---~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~l~~~g~   98 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVH---MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDYQRGLILTLADAGQ   98 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCC
Confidence            4445666666666665310   122332344443333  56778888888877654    24466777788888889999


Q ss_pred             HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010320          172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE  251 (513)
Q Consensus       172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  251 (513)
                      +++|+..+++..+..+.+.. +..+..++...|+.++|+..++++.+.  -+-+...+..+..++...|..+.|++.++.
T Consensus        99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~  175 (765)
T PRK10049         99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDD  175 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence            99999999998887666777 888888888999999999999998864  233455666777788888888888888876


Q ss_pred             HHHCCCCCCH------HHHHHHHHHHH-----HccCH---HHHHHHHHHHHcC-CCCCCHH-HH----HHHHHHHHhcCC
Q 010320          252 IKDSNLSPNV------FTYNYLIAGYM-----TAWMW---GKVEEIYQMMKAG-PVMPDTN-TY----LLLLRGYAHSGN  311 (513)
Q Consensus       252 m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~-t~----~~ll~~~~~~g~  311 (513)
                      ...   .|+.      .....++....     ..+++   ++|++.++.+.+. .-.|+.. .+    ...+.++...|+
T Consensus       176 ~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~  252 (765)
T PRK10049        176 ANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR  252 (765)
T ss_pred             CCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence            664   2331      11222222221     12234   6788888888753 2233321 11    111445567799


Q ss_pred             hHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc--cchHHHHHHHHHhcCCHHHHHH
Q 010320          312 LPRMEKIYELVKHHVDG-KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--PWLNVLLIRVYAKEDCLEEMEK  388 (513)
Q Consensus       312 ~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~  388 (513)
                      +++|+..|+.+.+.+.. |+. ....+...|...|++++|...++.+.........  ......+..++...|++++|.+
T Consensus       253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~  331 (765)
T PRK10049        253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT  331 (765)
T ss_pred             HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence            99999999999987532 322 2222567899999999998887766544332211  1112246667889999999999


Q ss_pred             HHHHHHhcCC-----------CCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHH
Q 010320          389 SINDAFEHKT-----------SVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE  455 (513)
Q Consensus       389 ~~~~~~~~~~-----------~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  455 (513)
                      +++++.....           .|.  ....+..+...+...|+.++|+++++++.... +-+...+..+...+...|+++
T Consensus       332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~  410 (765)
T PRK10049        332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPR  410 (765)
T ss_pred             HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence            9999887532           011  12345567778889999999999999997654 335778889999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      +|++.+++..... +-+...+..+...+...|++++|..+++++++.
T Consensus       411 ~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        411 AAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            9999999998865 445677778888999999999999999999864

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=3.7e-16  Score=145.81  Aligned_cols=337  Identities=15%  Similarity=0.076  Sum_probs=245.4

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH--------
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI--------  226 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--------  226 (513)
                      -.++|..+..++-..|++++|+.+++.+.+..+..+..|-.+..++...|+.+.|...|.+..+   +.|+.        
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lg  191 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLG  191 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchh
Confidence            4556666666666666666666666666666555666666666666666666666666665553   23333        


Q ss_pred             ---------------------------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHH
Q 010320          227 ---------------------------VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWG  278 (513)
Q Consensus       227 ---------------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~  278 (513)
                                                 +.|+.|...+-..|+...|+..|++..+.  .|+ ...|-.|...|...+.++
T Consensus       192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d  269 (966)
T KOG4626|consen  192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD  269 (966)
T ss_pred             HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence                                       23444555555666777777777776653  343 356666777777777777


Q ss_pred             HHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320          279 KVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       279 ~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      +|...|.+...  ..|+ ...|..+...|...|.+|.|+..+++..+.. +.-...|+.|..++-..|++.++...+...
T Consensus       270 ~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka  346 (966)
T KOG4626|consen  270 RAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA  346 (966)
T ss_pred             HHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence            77777777665  3454 5667777777778888888888888877752 224567889999999999999888888877


Q ss_pred             HhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc
Q 010320          358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC  437 (513)
Q Consensus       358 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~  437 (513)
                      ........... ++ |...|...|.+++|..+|...++  ..|.....++.|...|-+.|++++|+..+++...  ++|+
T Consensus       347 L~l~p~hadam-~N-Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~  420 (966)
T KOG4626|consen  347 LRLCPNHADAM-NN-LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT  420 (966)
T ss_pred             HHhCCccHHHH-HH-HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence            77776666665 33 88889999999999999988887  4455566788899999999999999999998875  3454


Q ss_pred             -HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010320          438 -RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV  508 (513)
Q Consensus       438 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  508 (513)
                       ...|+.+-..|-..|+.+.|.+.+.+...-+ +.=...++-|...|-..|+..+|+.-+++..+  ++||.
T Consensus       421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf  489 (966)
T KOG4626|consen  421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF  489 (966)
T ss_pred             HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence             5678888889999999999999999888754 23356788899999999999999999998764  45553

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.76  E-value=4.3e-14  Score=144.56  Aligned_cols=337  Identities=6%  Similarity=-0.093  Sum_probs=252.4

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+......+.+.|++++|++.|++..+..+ +...|..+..+|.+.|++++|++.++...+.  -+.+...|..+..++.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence            345667778899999999999999887543 6778999999999999999999999999863  2335678999999999


Q ss_pred             hcCChhHHHHHHHHHHHCCCC----------------------------C-CHHHHHHHHH-------------------
Q 010320          238 RLLLVDHMEAAFQEIKDSNLS----------------------------P-NVFTYNYLIA-------------------  269 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~----------------------------p-~~~~~~~li~-------------------  269 (513)
                      ..|++++|+.-|......+-.                            | +...+..+..                   
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            999999998766544321100                            0 0000000000                   


Q ss_pred             -------HH----------HHccCHHHHHHHHHHHHcCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc
Q 010320          270 -------GY----------MTAWMWGKVEEIYQMMKAGP-VMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE  330 (513)
Q Consensus       270 -------~~----------~~~g~~~~a~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  330 (513)
                             ++          ...+++++|.+.|++..+.+ ..| +...|..+...+...|++++|...++...+.. +..
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~  364 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV  364 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence                   00          11257889999999988754 334 35678888888899999999999999988763 334


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010320          331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV  410 (513)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li  410 (513)
                      ...|..+...+...|++++|...++...+..+.+...+  ..+...+...|++++|...|++.++.  .|.+...+..+.
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la  440 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY--YHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLG  440 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHH
Confidence            66788888899999999999888877766655554444  25788899999999999999999884  455666788888


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CH-HHHHHHHHHHH
Q 010320          411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC-----SK-KTFWIMYYAYA  484 (513)
Q Consensus       411 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~-~~~~~li~~~~  484 (513)
                      ..+.+.|++++|+..+++..+.. +-+...|+.+...+...|++++|.+.|++.....-..     +. ..++..+..+.
T Consensus       441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~  519 (615)
T TIGR00990       441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ  519 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence            99999999999999999987654 2357788889999999999999999999988653111     11 11222223344


Q ss_pred             hcCCHhHHHHHHHHHHHCC
Q 010320          485 TCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       485 ~~g~~~~A~~~~~~m~~~g  503 (513)
                      ..|++++|.+++++..+..
T Consensus       520 ~~~~~~eA~~~~~kAl~l~  538 (615)
T TIGR00990       520 WKQDFIEAENLCEKALIID  538 (615)
T ss_pred             HhhhHHHHHHHHHHHHhcC
Confidence            5799999999999887653

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=3.1e-14  Score=127.54  Aligned_cols=375  Identities=12%  Similarity=0.152  Sum_probs=272.7

Q ss_pred             HHHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH--hcccCCHH-HHHHHHHHHHhcc-----------
Q 010320          122 AFVELMKQLG-SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKF--AGRINNVD-LAADLFAEAANKH-----------  186 (513)
Q Consensus       122 ~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~g~~~-~a~~~~~~m~~~~-----------  186 (513)
                      +=+.+++-.+ +....+.-+|+.|+..+   ++-+...--.|++.  |....++- .-.+.|-.|...|           
T Consensus       118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~---~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~  194 (625)
T KOG4422|consen  118 TENNLLKMISSREVKDSCILYERMRSEN---VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA  194 (625)
T ss_pred             chhHHHHHHhhcccchhHHHHHHHHhcC---CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence            4456666663 46667888999888754   55566666555543  33333333 3345566665443           


Q ss_pred             --------CC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 010320          187 --------LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL  257 (513)
Q Consensus       187 --------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  257 (513)
                              .| +..+|.+||.++|+--..+.|.+++++-... ..+.+..+||.+|.+-.-.-    ..+++.+|....+
T Consensus       195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm  269 (625)
T KOG4422|consen  195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM  269 (625)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence                    12 5678999999999999999999999999875 66899999999998754332    2789999999999


Q ss_pred             CCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHh----ccCC
Q 010320          258 SPNVFTYNYLIAGYMTAWMWGK----VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKH----HVDG  328 (513)
Q Consensus       258 ~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~----~~~~  328 (513)
                      .||..|+|+++.+..+.|+++.    |.+++.+|++-||.|...+|..+|..+++.++..+ +..++.++..    ..+.
T Consensus       270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk  349 (625)
T KOG4422|consen  270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK  349 (625)
T ss_pred             CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence            9999999999999999998774    56788999999999999999999999999988755 4444444433    3445


Q ss_pred             C----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc------chHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010320          329 K----EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP------WLNVLLIRVYAKEDCLEEMEKSINDAFEHKT  398 (513)
Q Consensus       329 ~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  398 (513)
                      |    |...|..-+..|.+..+.+-|.++..+++.-......+      .+|.-+....|.....+.-...|+.|.-.-.
T Consensus       350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y  429 (625)
T KOG4422|consen  350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY  429 (625)
T ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence            5    23355667777888888899999988887654433322      2355677888888899999999998887644


Q ss_pred             CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC-C--------HHH-----HHHHH---
Q 010320          399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR-R--------VEE-----MESVL---  461 (513)
Q Consensus       399 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~---  461 (513)
                      .| ...+..-++++....|.++-.-++|..++..|...+...-.-++..+++.. .        +..     |..++   
T Consensus       430 ~p-~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~  508 (625)
T KOG4422|consen  430 FP-HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY  508 (625)
T ss_pred             cC-CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            44 455677788899999999999999999999887666665555555566544 1        111     11122   


Q ss_pred             ----HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010320          462 ----KEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP  507 (513)
Q Consensus       462 ----~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  507 (513)
                          .+|...++  .....+...-.+.+.|..++|.+++..+.+.|-+..
T Consensus       509 e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip  556 (625)
T KOG4422|consen  509 ESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP  556 (625)
T ss_pred             HhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence                23443443  445677777788999999999999999977665543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.72  E-value=1.4e-12  Score=136.01  Aligned_cols=365  Identities=12%  Similarity=-0.005  Sum_probs=258.7

Q ss_pred             HHhhcCCChhHHHHHHhhhCCccccccCc-hhHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhc
Q 010320           91 ELLANVDDLDKVFRVLDEKGSCLFRRHSN-GYAFVELMKQ--LGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG  167 (513)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~l~~--~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~  167 (513)
                      .+..+.++..++...+.+.-    ...|+ ...+..+...  -.++.+.|...++.+.+.    .+.+.. +..+..++.
T Consensus        57 ~~~~~~g~~~~A~~~~~~al----~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~  127 (765)
T PRK10049         57 VAYRNLKQWQNSLTLWQKAL----SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG----APDKAN-LLALAYVYK  127 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHH
Confidence            34466677777777777743    22333 2223333333  367899999999988765    244666 888888999


Q ss_pred             ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH----
Q 010320          168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI------VTYNTLISVFG----  237 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~------~~~~~li~~~~----  237 (513)
                      ..|+.++|+..++++.+..+.+...+..+..++...|..++|++.++....    .|+.      .....++....    
T Consensus       128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~  203 (765)
T PRK10049        128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTR  203 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhccccc
Confidence            999999999999999998877888888889999999999999999986653    2332      11222232222    


Q ss_pred             -hcCCh---hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHHccCHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHH
Q 010320          238 -RLLLV---DHMEAAFQEIKDS-NLSPNVF-TY----NYLIAGYMTAWMWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGY  306 (513)
Q Consensus       238 -~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~  306 (513)
                       ..+++   ++|++.++.+.+. ...|+.. .+    ...+..+...|++++|+..|+.+.+.+-. |+. .-..+..+|
T Consensus       204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y  282 (765)
T PRK10049        204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY  282 (765)
T ss_pred             ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence             12234   7788899988854 2223321 11    11144556779999999999999987632 332 222357789


Q ss_pred             HhcCChHHHHHHHHHHHhccCCC---cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----------c-cc--hH
Q 010320          307 AHSGNLPRMEKIYELVKHHVDGK---EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY----------R-PW--LN  370 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~-~~--~~  370 (513)
                      ...|++++|+.+|+.+.+.....   .......+..++...|++++|.+.++.+....+...          . .+  ..
T Consensus       283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~  362 (765)
T PRK10049        283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ  362 (765)
T ss_pred             HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence            99999999999999987653211   134566677788999999988877766655432111          0 11  12


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320          371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  450 (513)
                      ..+...+...|++++|++.++++...  .|.+...+..+...+...|++++|++.+++..+... -+...+......+.+
T Consensus       363 ~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~  439 (765)
T PRK10049        363 SLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALD  439 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHH
Confidence            24677888999999999999999884  455677899999999999999999999999887552 235666677778899


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHH
Q 010320          451 QRRVEEMESVLKEMENYKIDCSKK  474 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~~~~p~~~  474 (513)
                      .|++++|+.+++++.+..  |+..
T Consensus       440 ~~~~~~A~~~~~~ll~~~--Pd~~  461 (765)
T PRK10049        440 LQEWRQMDVLTDDVVARE--PQDP  461 (765)
T ss_pred             hCCHHHHHHHHHHHHHhC--CCCH
Confidence            999999999999999753  4443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.71  E-value=3.7e-12  Score=130.65  Aligned_cols=393  Identities=11%  Similarity=0.007  Sum_probs=249.7

Q ss_pred             hcCCChhHHHHHHhhhCCccccccCchh--HHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhccc
Q 010320           94 ANVDDLDKVFRVLDEKGSCLFRRHSNGY--AFVELMK--QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI  169 (513)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~  169 (513)
                      .+.++...+++.+.+..    ...|+..  .+ .++.  ...+..+.|+..++.....    .+........+...|...
T Consensus        45 ~r~Gd~~~Al~~L~qaL----~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p----~n~~~~~llalA~ly~~~  115 (822)
T PRK14574         45 ARAGDTAPVLDYLQEES----KAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS----MNISSRGLASAARAYRNE  115 (822)
T ss_pred             HhCCCHHHHHHHHHHHH----hhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHc
Confidence            34455556666666653    2244431  22 3322  2346777888877765411    222344444446678888


Q ss_pred             CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010320          170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF  249 (513)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  249 (513)
                      |++++|.++|+++.+..+.+...+..++..+...++.++|++.++++...   .|+...+-.++..+...++..+|++.+
T Consensus       116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~  192 (822)
T PRK14574        116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQAS  192 (822)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence            99999999999998887777888888888889999999999999988864   567666655555554556666689999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHH--------------------------------------------
Q 010320          250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ--------------------------------------------  285 (513)
Q Consensus       250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------------------------------------------  285 (513)
                      +++.+... -+...+..++.++.+.|-...|+++.+                                            
T Consensus       193 ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al  271 (822)
T PRK14574        193 SEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL  271 (822)
T ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence            99988653 245555666666666555444443332                                            


Q ss_pred             ----HHHc-CCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010320          286 ----MMKA-GPVMPDT-----NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA  355 (513)
Q Consensus       286 ----~m~~-~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  355 (513)
                          .+.. .+-.|..     ....-.+-++...|++.++++.|+.+...+.+....+-.++.++|...+.+++|..+++
T Consensus       272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~  351 (822)
T PRK14574        272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS  351 (822)
T ss_pred             HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence                2221 1111221     11123345666777888888888888877655445566778888888887777777765


Q ss_pred             HHHhCCCCC-ccc-c--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------------CCchHHHHHHHHHHHHhcCc
Q 010320          356 LMRLIPEKE-YRP-W--LNVLLIRVYAKEDCLEEMEKSINDAFEHKT-------------SVTTVRIMRCIVSSYFRCNA  418 (513)
Q Consensus       356 ~~~~~~~~~-~~~-~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~~li~~~~~~~~  418 (513)
                      .+..-.... ..+ .  ....|.-+|...+++++|..+++++.+...             .+.-...+..++..+...|+
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd  431 (822)
T PRK14574        352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND  431 (822)
T ss_pred             HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence            543322110 100 1  023477778888888888888888776221             01112223445666777888


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010320          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  498 (513)
                      ..+|++.++++.... +-|......+.+.+...|.+.+|.+.++.....+ +-+..+......++...|++++|..+.+.
T Consensus       432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~  509 (822)
T PRK14574        432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDD  509 (822)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            888888888886554 3367777777788888888888888886666553 44566666777788888888888777766


Q ss_pred             HHH
Q 010320          499 MCK  501 (513)
Q Consensus       499 m~~  501 (513)
                      ..+
T Consensus       510 l~~  512 (822)
T PRK14574        510 VIS  512 (822)
T ss_pred             HHh
Confidence            543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.69  E-value=4.9e-12  Score=129.80  Aligned_cols=370  Identities=9%  Similarity=-0.031  Sum_probs=256.1

Q ss_pred             cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHH
Q 010320          117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTK--EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYN  194 (513)
Q Consensus       117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  194 (513)
                      .|+..-...++..-.++.+.|++.|+...+.     .|+.  ..+ .++..+...|+.++|+..+++.......+.....
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~-----~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll  106 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA-----GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA  106 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence            4454444455555578999999999988763     3343  234 8888888999999999999998832122344444


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010320          195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      .+...|...|++++|+++|+++.+.  .+-|...+..++..+...++.++|++.++++...  .|+...+-.++..+...
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~  182 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT  182 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence            4466899999999999999999975  2445677778889999999999999999999875  46666664444444445


Q ss_pred             cCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH---------------------------------
Q 010320          275 WMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYE---------------------------------  320 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~---------------------------------  320 (513)
                      ++..+|++.++++.+..  | +...+..+..++.+.|-...|.++.+                                 
T Consensus       183 ~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~  260 (822)
T PRK14574        183 DRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE  260 (822)
T ss_pred             chHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence            66667999999999853  5 46666777777776665544443333                                 


Q ss_pred             ---------------HHHhc-cCCCc-HH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--cccchHHHHHHHH
Q 010320          321 ---------------LVKHH-VDGKE-FP----LIRAMICAYSKCSVTDRIKKIEALMRLIPEKE--YRPWLNVLLIRVY  377 (513)
Q Consensus       321 ---------------~~~~~-~~~~~-~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~  377 (513)
                                     .+... +..|. ..    ...-.+-++.+.|+..   ++.+.++.+...+  +.++.-..+.++|
T Consensus       261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~---~vi~~y~~l~~~~~~~P~y~~~a~aday  337 (822)
T PRK14574        261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA---DLIKEYEAMEAEGYKMPDYARRWAASAY  337 (822)
T ss_pred             hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH---HHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence                           22211 11121 11    1122333455556444   4445555555433  3444444688999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-----------ccc--H-h
Q 010320          378 AKEDCLEEMEKSINDAFEHKT----SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW-----------RLC--R-S  439 (513)
Q Consensus       378 ~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~--~-~  439 (513)
                      ...++.++|+.+++++.....    .+.+......|..+|...+++++|..+++.+.+...           .|+  - .
T Consensus       338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~  417 (822)
T PRK14574        338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE  417 (822)
T ss_pred             HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence            999999999999998876432    122343356788899999999999999999876321           122  1 1


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+..++..+...|+..+|++.++++.... +-|......+...+...|++.+|++.++.....
T Consensus       418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l  479 (822)
T PRK14574        418 GQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL  479 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence            23445677888999999999999998765 668888889999999999999999999766544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.65  E-value=2e-12  Score=124.50  Aligned_cols=283  Identities=8%  Similarity=0.038  Sum_probs=161.3

Q ss_pred             cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHH
Q 010320          169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN--TLISVFGRLLLVDHME  246 (513)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~--~li~~~~~~g~~~~A~  246 (513)
                      .|++++|.+.+....+........|-....+..+.|+++.|.+.|.++.+.   .|+...+.  .....+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            577777777776655432111222333334446777777777777777653   45543332  3355667777777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 010320          247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-------NTYLLLLRGYAHSGNLPRMEKIY  319 (513)
Q Consensus       247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~  319 (513)
                      ..++++.+.... +......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...+++
T Consensus       174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            777777766532 5666777777777777777777777777776544221       12222222222222223333333


Q ss_pred             HHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010320          320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS  399 (513)
Q Consensus       320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  399 (513)
                      +.+.+. .+.+.....                                    .+...+...|+.++|.+++++..+... 
T Consensus       253 ~~lp~~-~~~~~~~~~------------------------------------~~A~~l~~~g~~~~A~~~L~~~l~~~~-  294 (398)
T PRK10747        253 KNQSRK-TRHQVALQV------------------------------------AMAEHLIECDDHDTAQQIILDGLKRQY-  294 (398)
T ss_pred             HhCCHH-HhCCHHHHH------------------------------------HHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence            332211 112222222                                    355566666666666666666655322 


Q ss_pred             CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320          400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM  479 (513)
Q Consensus       400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  479 (513)
                        +...  .++.+....++.+++.+..+...+... -|...+..+...+.+.+++++|.+.|+...+.  .|+..+|..+
T Consensus       295 --~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~L  367 (398)
T PRK10747        295 --DERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWL  367 (398)
T ss_pred             --CHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence              2211  123344455677777777766654432 24555666667777777777777777777653  4677777777


Q ss_pred             HHHHHhcCCHhHHHHHHHHHH
Q 010320          480 YYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       480 i~~~~~~g~~~~A~~~~~~m~  500 (513)
                      ...+.+.|+.++|.+++++-.
T Consensus       368 a~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        368 ADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            777777777777777776554

>TIGR00540 hemY_coli hemY protein

Probab=99.64  E-value=7.5e-12  Score=121.15  Aligned_cols=131  Identities=8%  Similarity=0.020  Sum_probs=90.6

Q ss_pred             HHHHHHHh--cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH--HHHHHHH
Q 010320          159 YTKGIKFA--GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV--TYNTLIS  234 (513)
Q Consensus       159 ~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~--~~~~li~  234 (513)
                      +..+..+.  ...|+++.|.+.+....+....+...+-....++...|+.+.|.+.|.+..+.   .|+..  ..-....
T Consensus        85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~  161 (409)
T TIGR00540        85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTR  161 (409)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHH
Confidence            34444443  35788888888887776654324444455566677778888888888887654   34442  3333467


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010320          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM  293 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  293 (513)
                      .+...|+++.|...++++.+.++. +..++..+...+.+.|++++|.+++..+.+.++.
T Consensus       162 l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~  219 (409)
T TIGR00540       162 ILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF  219 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            777788888888888888876532 5667778888888888888888888888877644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.60  E-value=8.7e-15  Score=134.55  Aligned_cols=260  Identities=11%  Similarity=0.065  Sum_probs=98.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010320          233 ISVFGRLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN  311 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  311 (513)
                      ...+.+.|++++|++++++.......| |...|..+...+...+++++|.+.++++...+-. +...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            444555555555555554332222112 2233333333444455555555555555543322 33344444444 45555


Q ss_pred             hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010320          312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN  391 (513)
Q Consensus       312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  391 (513)
                      +++|.++++...+..  ++...+..++..+...++++++.++++.+.........+..+..+...+.+.|+.++|++.++
T Consensus        93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555555555444332  233344455555555565555555555444333222222223346677778888899999998


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010320          392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC  471 (513)
Q Consensus       392 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  471 (513)
                      +.++.  .|.+..+.+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|..+|++....+ +.
T Consensus       171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~  246 (280)
T PF13429_consen  171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD  246 (280)
T ss_dssp             HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred             HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence            88884  45566678889999999999999888888877654 4466677888899999999999999999988765 55


Q ss_pred             CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          472 SKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       472 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      |......+..++...|+.++|.++.++..
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             -HHHHHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            88888899999999999999999887654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.59  E-value=3.5e-10  Score=118.78  Aligned_cols=323  Identities=10%  Similarity=-0.030  Sum_probs=232.1

Q ss_pred             cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCC---hhH
Q 010320          169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK-EANISPSIVTYNTLISVFGRLLL---VDH  244 (513)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~g~~p~~~~~~~li~~~~~~g~---~~~  244 (513)
                      .+...++.+.++.|-+....+......+.-...+.|+.++|..+|..... ...-.++....+-++..|.+.+.   ..+
T Consensus       355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  434 (987)
T PRK09782        355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK  434 (987)
T ss_pred             cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence            35556666666666665444555556666667788999999999998875 21122344455577777777765   222


Q ss_pred             HHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH
Q 010320          245 MEAA----------------------FQEIKDS-NL-SP--NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT  298 (513)
Q Consensus       245 A~~~----------------------~~~m~~~-g~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  298 (513)
                      +..+                      .+..... +. .+  +...|..+..++.. |+.++|+..|.+....  .|+...
T Consensus       435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~  511 (987)
T PRK09782        435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ  511 (987)
T ss_pred             HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence            2222                      1111111 11 23  56778888877776 8899999988887763  477655


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Q 010320          299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA  378 (513)
Q Consensus       299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  378 (513)
                      ...+...+...|++++|...|+++...  +|+...+..+..++.+.|+.+.|...++...+........  ...+...+.
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l--~~~La~~l~  587 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNAL--YWWLHAQRY  587 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHH
Confidence            555566667899999999999987664  3444456667788899999998888877666654222111  112233344


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHH
Q 010320          379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME  458 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  458 (513)
                      ..|++++|...+++.++..  |. ...+..+...+.+.|+.++|...+++..+.... +...++.+...+...|++++|+
T Consensus       588 ~~Gr~~eAl~~~~~AL~l~--P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        588 IPGQPELALNDLTRSLNIA--PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSR  663 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhC--CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence            5599999999999998854  33 567888999999999999999999999876633 5677888888999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ..+++..+.. +-+...+..+..++...|++++|+..+++..+..
T Consensus       664 ~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        664 EMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            9999998865 4577889999999999999999999999987653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=2e-11  Score=106.04  Aligned_cols=297  Identities=14%  Similarity=0.108  Sum_probs=160.2

Q ss_pred             CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHH
Q 010320          170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI--VTYNTLISVFGRLLLVDHMEA  247 (513)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~  247 (513)
                      ++.++|.++|-+|.+....+..+.-+|.+.|-+.|..|+|+++...+..+.+..-+.  ...-.|..-|...|-++.|+.
T Consensus        49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~  128 (389)
T COG2956          49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED  128 (389)
T ss_pred             cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            345555555555555433344445555555555555555555555555431111000  122233344444555555555


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 010320          248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD  327 (513)
Q Consensus       248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  327 (513)
                      +|..+.+.|. --......|+..|-...+|++|+++-+++.+.|-++..+    -                         
T Consensus       129 ~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----e-------------------------  178 (389)
T COG2956         129 IFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----E-------------------------  178 (389)
T ss_pred             HHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----H-------------------------
Confidence            5555544322 123344444555555555555555555444433222100    0                         


Q ss_pred             CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010320          328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR  407 (513)
Q Consensus       328 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  407 (513)
                        =...|..|...+....++++|...++..-+..++.+...+  ++.......|+++.|.+.++.+.+.+... -..+..
T Consensus       179 --IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi--~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-l~evl~  253 (389)
T COG2956         179 --IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI--ILGRVELAKGDYQKAVEALERVLEQNPEY-LSEVLE  253 (389)
T ss_pred             --HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh--hhhHHHHhccchHHHHHHHHHHHHhChHH-HHHHHH
Confidence              0112333333333344444444433333333333333332  56777788888888888888888765443 345677


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 010320          408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT--  485 (513)
Q Consensus       408 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--  485 (513)
                      .|..+|.+.|+.++...++.++.+....++..  ..+-+.-....-.+.|..++.+-..+  +|+...+..++..-..  
T Consensus       254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~da  329 (389)
T COG2956         254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADA  329 (389)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccc
Confidence            88889999999999999999887665444432  33444444455566677666655543  6888888888877643  


Q ss_pred             -cCCHhHHHHHHHHHHHCCCC
Q 010320          486 -CGQRRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       486 -~g~~~~A~~~~~~m~~~g~~  505 (513)
                       .|.+.+.+.++++|...-++
T Consensus       330 eeg~~k~sL~~lr~mvge~l~  350 (389)
T COG2956         330 EEGRAKESLDLLRDMVGEQLR  350 (389)
T ss_pred             cccchhhhHHHHHHHHHHHHh
Confidence             44567777778887655443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.59  E-value=1.2e-11  Score=119.14  Aligned_cols=262  Identities=9%  Similarity=0.025  Sum_probs=185.2

Q ss_pred             cCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHccCHHH
Q 010320          203 NGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN--YLIAGYMTAWMWGK  279 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~  279 (513)
                      .|++++|.+.+....+.   .++.. .|.....+..+.|+++.|.+.|+++.+.  .|+...+-  .....+...|++++
T Consensus        97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA  171 (398)
T ss_pred             CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence            69999999888876642   22333 3434455558999999999999999875  35543333  33568888999999


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH-HHHHhcCChhHHHHHHHHHH
Q 010320          280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI-CAYSKCSVTDRIKKIEALMR  358 (513)
Q Consensus       280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~  358 (513)
                      |.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. ...+- .+|.                
T Consensus       172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~~~a~~----------------  233 (398)
T PRK10747        172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLEQQAWI----------------  233 (398)
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHH----------------
Confidence            999999998855 2257888899999999999999999999999876543222 11110 1111                


Q ss_pred             hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010320          359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR  438 (513)
Q Consensus       359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~  438 (513)
                                   .++.......+.+...++++...+.  .+.+......+...+...|+.++|.+++++..+..  ++.
T Consensus       234 -------------~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~  296 (398)
T PRK10747        234 -------------GLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDE  296 (398)
T ss_pred             -------------HHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCH
Confidence                         1111112223344444555444331  23456678889999999999999999999988744  344


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCC
Q 010320          439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVN  509 (513)
Q Consensus       439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  509 (513)
                      ..  .++.+....++.+++.+..+...++. +-|...+..+.+.|.+.|++++|.+.|++..+.  .|+..
T Consensus       297 ~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~  362 (398)
T PRK10747        297 RL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAY  362 (398)
T ss_pred             HH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence            22  23344456799999999999999765 556777889999999999999999999999876  35543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.59  E-value=2.5e-14  Score=131.56  Aligned_cols=260  Identities=11%  Similarity=0.053  Sum_probs=105.7

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhcc-CC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010320          161 KGIKFAGRINNVDLAADLFAEAANKH-LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR  238 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~  238 (513)
                      .+...+.+.|++++|+++++...... .+ +...|..+...+...++.+.|++.++++... + +-+...+..++.. ..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~-~~~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-D-KANPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc-cc
Confidence            55777889999999999997654444 33 7778888888888899999999999999864 2 2355667777777 78


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010320          239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRMEK  317 (513)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~  317 (513)
                      .+++++|.+++++..+..  ++...+..++..+.+.|+++++.++++++... ....+...|..+...+.+.|+.++|.+
T Consensus        90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999998876543  56777888899999999999999999997753 245678888999999999999999999


Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010320          318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK  397 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  397 (513)
                      ++++..+.. +.+....+.++..+...|+.+++.++++.+.+..+.+...+.  .+..+|...|+.++|..+|++.... 
T Consensus       168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~--~la~~~~~lg~~~~Al~~~~~~~~~-  243 (280)
T PF13429_consen  168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD--ALAAAYLQLGRYEEALEYLEKALKL-  243 (280)
T ss_dssp             HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH--HHHHHHHHHT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH--HHHHHhccccccccccccccccccc-
Confidence            999999873 346778888999999999888888887777666544444442  5788888888888888888887773 


Q ss_pred             CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010320          398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE  430 (513)
Q Consensus       398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  430 (513)
                       .|.++.+...+..++...|+.++|.++.++..
T Consensus       244 -~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  244 -NPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             -STT-HHHHHHHHHHHT----------------
T ss_pred             -cccccccccccccccccccccccccccccccc
Confidence             34566677788888888888888888877653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.58  E-value=6e-11  Score=124.46  Aligned_cols=350  Identities=10%  Similarity=-0.010  Sum_probs=247.5

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc-cC--CCHhHHHHHHHHHHHcCC---hHH
Q 010320          135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HL--KTIGTYNALLGAYMYNGL---SDK  208 (513)
Q Consensus       135 ~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~--~~~~~~~~li~~~~~~g~---~~~  208 (513)
                      .++.+....+.+..    +-+....-.+.-...+.|+.++|..+|+..... +-  .+....+-|+..|.+.+.   ..+
T Consensus       359 ~~~~~~~~~~y~~~----~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  434 (987)
T PRK09782        359 AEALRLARLLYQQE----PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK  434 (987)
T ss_pred             hHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence            34445555555541    236667777777778899999999999987763 21  145566677777777765   333


Q ss_pred             HHHH----------------------HHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010320          209 CQSL----------------------FRDLKKEANI-SP--SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT  263 (513)
Q Consensus       209 A~~~----------------------~~~m~~~~g~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  263 (513)
                      +..+                      ++......+. ++  +...|..+..++.. ++.++|...|.+.....  |+...
T Consensus       435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~  511 (987)
T PRK09782        435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ  511 (987)
T ss_pred             HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence            3222                      2222222122 33  56778888877776 78888999888777653  66544


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010320          264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK  343 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (513)
                      ...+...+...|++++|...|+++...  .|+...+..+..++.+.|++++|...++...+.. +.+...+..+...+..
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~  588 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI  588 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence            333444556899999999999998663  4555566777888899999999999999988764 3333444444444556


Q ss_pred             cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHH
Q 010320          344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA  423 (513)
Q Consensus       344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  423 (513)
                      .|+++.|...++...+..+. ...  +..+...+.+.|++++|+..+++.+..  .|.+...++.+...+...|+.++|+
T Consensus       589 ~Gr~~eAl~~~~~AL~l~P~-~~a--~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        589 PGQPELALNDLTRSLNIAPS-ANA--YVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSR  663 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCC-HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            69999888887766665553 322  335788899999999999999998884  4666778888989999999999999


Q ss_pred             HHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       424 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      +.+++..+... -+...+..+..++...|++++|+..|++..+.. +-+..+.........+..+++.|.+-+++-..
T Consensus       664 ~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~  739 (987)
T PRK09782        664 EMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT  739 (987)
T ss_pred             HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            99999887653 356778889999999999999999999998765 22335555666667777777777777665443

>TIGR00540 hemY_coli hemY protein

Probab=99.57  E-value=3.2e-11  Score=116.81  Aligned_cols=295  Identities=9%  Similarity=0.033  Sum_probs=206.7

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010320          201 MYNGLSDKCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK  279 (513)
Q Consensus       201 ~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  279 (513)
                      ...|+++.|.+.+.+..+.   .|+. ..|-....+..+.|+.+.|.+.+++..+....++....-.....+...|++++
T Consensus        95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence            4579999999999887753   4654 34455567788899999999999998765433333344445778888999999


Q ss_pred             HHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHH---HhcCChhH-HHHHH
Q 010320          280 VEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY---SKCSVTDR-IKKIE  354 (513)
Q Consensus       280 a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~-a~~~~  354 (513)
                      |.+.++.+.+.+  | +......+...+...|++++|.+++..+.+.+..+.......-..++   ...+..+. .....
T Consensus       172 Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       172 ARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            999999999865  4 57788899999999999999999999999986544332211111221   21111111 11222


Q ss_pred             HHHHhCCCC-CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010320          355 ALMRLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG  433 (513)
Q Consensus       355 ~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  433 (513)
                      ......+.. .-.+.....+...+...|+.++|.+++++..+.....................++.+.+.+.++...+..
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            333333321 0112223368889999999999999999999854433322111112223344578888888888776543


Q ss_pred             CcccH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          434 WRLCR--SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       434 ~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      . -|.  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++-..
T Consensus       330 p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       330 D-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             C-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2 233  556788889999999999999999655444579999999999999999999999999998643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.56  E-value=4.4e-12  Score=114.74  Aligned_cols=187  Identities=9%  Similarity=0.020  Sum_probs=143.1

Q ss_pred             hcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHH
Q 010320          308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME  387 (513)
Q Consensus       308 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  387 (513)
                      ..|+++.|.+.+++....+-......||. --.+-+.|++++|.+.+-.+..+...+....+  .+...|-...+...|+
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~--qianiye~led~aqai  578 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLV--QIANIYELLEDPAQAI  578 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHhhCHHHHH
Confidence            35789999999998887654444444443 22466778888887777666655544443332  4677788888999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320          388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      +++.+...  ..|+++.++..|...|-+.|+-..|.+.+-+--. -++.+..+...|...|....-+++|+.+|++..- 
T Consensus       579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal-  654 (840)
T KOG2003|consen  579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-  654 (840)
T ss_pred             HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence            99865544  7788999999999999999999999887665432 3456788899999999999999999999998653 


Q ss_pred             CCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHHHHHC
Q 010320          468 KIDCSKKTFWIMYYA-YATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       468 ~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~  502 (513)
                       ++|+..-|..++.. +.+.|++++|.+++++..+.
T Consensus       655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence             68999999988755 45789999999999988764

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.6e-10  Score=105.25  Aligned_cols=335  Identities=13%  Similarity=0.042  Sum_probs=223.2

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH-----------------------------HHHH
Q 010320          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG-----------------------------AYMY  202 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~-----------------------------~~~~  202 (513)
                      ...|...+-...-.+-+.|..+.|.+.|......-+..-..|-.|..                             ++-.
T Consensus       160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e  239 (559)
T KOG1155|consen  160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE  239 (559)
T ss_pred             ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence            33455554455555667788888888887766532222222222221                             2222


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHccCHH-H
Q 010320          203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--PNVFTYNYLIAGYMTAWMWG-K  279 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~-~  279 (513)
                      ..+.++++.-.+..... |+.-+...-+-...+.-...|+++|+.+|+++.+..+-  -|..+|..++-.--...... -
T Consensus       240 l~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L  318 (559)
T KOG1155|consen  240 LHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL  318 (559)
T ss_pred             HHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence            23444444444444443 44333333233333344455666677777666654211  14455555543222111111 1


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010320          280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL  359 (513)
Q Consensus       280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  359 (513)
                      |..+++ .  ...  -..|+.++.+-|.-.++.+.|...|++..+.+ +.....|+.+.+-|....+...|.+.++...+
T Consensus       319 A~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd  392 (559)
T KOG1155|consen  319 AQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD  392 (559)
T ss_pred             HHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence            111111 0  112  23466677777778888999999999999874 34677899999999999999999999999999


Q ss_pred             CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh
Q 010320          360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS  439 (513)
Q Consensus       360 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  439 (513)
                      +.+.+...| | -+..+|.-.+...=|+-.|++...  ..|.|..+|.+|..+|.+.++.++|++-|++....|-. +..
T Consensus       393 i~p~DyRAW-Y-GLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~  467 (559)
T KOG1155|consen  393 INPRDYRAW-Y-GLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS  467 (559)
T ss_pred             cCchhHHHH-h-hhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence            999999999 5 499999999999999999999887  66889999999999999999999999999999877733 667


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010320          440 LYHSKMVMYASQRRVEEMESVLKEMEN----YKIDCS--KKTFWIMYYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       440 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~  498 (513)
                      .+..|.+.|-+.++.++|...|+...+    .|..-+  .....-|..-+.+.+++++|..+...
T Consensus       468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~  532 (559)
T KOG1155|consen  468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL  532 (559)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            899999999999999999999887665    243222  22222355667788888887665443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=8.8e-12  Score=118.44  Aligned_cols=287  Identities=13%  Similarity=0.042  Sum_probs=216.1

Q ss_pred             ChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHccCHHHHH
Q 010320          205 LSDKCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNL--SPNVFTYNYLIAGYMTAWMWGKVE  281 (513)
Q Consensus       205 ~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~  281 (513)
                      +..+|+..|..+...   .+|. ....-+..+|...+++++|+++|+.+.+...  .-+..+|.+.+--+-+.    -++
T Consensus       334 ~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~L  406 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH---HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VAL  406 (638)
T ss_pred             HHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHH
Confidence            467888888886643   3444 4556677889999999999999999886431  12677888887655332    222


Q ss_pred             HHH-HHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010320          282 EIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI  360 (513)
Q Consensus       282 ~~~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  360 (513)
                      ..+ +++.... +-...+|.++.++|.-.++.+.|++.|++.++.+ +....+|+.+..-+.....+|+|...++....+
T Consensus       407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            222 2222211 2357899999999999999999999999988853 236778888887888888888888888888888


Q ss_pred             CCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh
Q 010320          361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL  440 (513)
Q Consensus       361 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~  440 (513)
                      ..+++..| |. +...|.+.++++.|+-.|++.++  ..|.+..+...+...+.+.|+.|+|+++++++.....+ |+-.
T Consensus       485 ~~rhYnAw-YG-lG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~  559 (638)
T KOG1126|consen  485 DPRHYNAW-YG-LGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC  559 (638)
T ss_pred             CchhhHHH-Hh-hhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence            88888888 53 88899999999999999998887  55666667777888889999999999999998766544 2222


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010320          441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDV  506 (513)
Q Consensus       441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  506 (513)
                      --.-+..+...+++++|+..++++++.- +-+...|..+.+.|-+.|+.+.|+.-|--|.+..-++
T Consensus       560 ~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  560 KYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            2234556777899999999999999752 4456778888999999999999988887776654443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.52  E-value=1.1e-12  Score=127.76  Aligned_cols=264  Identities=16%  Similarity=0.136  Sum_probs=165.2

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010320          212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      ++-.+... |+.||.+||..+|.-||..|+.+.|- +|.-|.-.....+...|+.++.+..++++.+.+.          
T Consensus        12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            45556654 88888888888888888888888888 8888877767677788888888888887776665          


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010320          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV  371 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  371 (513)
                       .|...||+.|+.+|...||+..    |+...+        -.-.++..+...|.-......+.  .--..++..+... 
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~--k~~c~p~~lpda~-  143 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLM--KIHCCPHSLPDAE-  143 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHh--hcccCcccchhHH-
Confidence             5778888888888888888655    332222        01123333444443222112111  1123344444422 


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  451 (513)
                      ..+.-....|.++.+++++..+-......|    +..+++-+....  ....+++...+...-.|+..+|.++++.-...
T Consensus       144 n~illlv~eglwaqllkll~~~Pvsa~~~p----~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaa  217 (1088)
T KOG4318|consen  144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAP----FQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAA  217 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcccccch----HHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Confidence            245555566667777766644332211111    111233332222  22233333333222257778888888888888


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCC
Q 010320          452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFP  512 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  512 (513)
                      |+++.|..++.+|+++|++.+.+-|..|+-+   .++...+..+++-|.+.|+.|+.+|+.
T Consensus       218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~a  275 (1088)
T KOG4318|consen  218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQA  275 (1088)
T ss_pred             CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence            8888888888888888888787777777766   677777788888888888888887763

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.51  E-value=1.4e-09  Score=97.60  Aligned_cols=292  Identities=11%  Similarity=0.051  Sum_probs=182.4

Q ss_pred             ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010320          168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA  247 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  247 (513)
                      -.|+|.+|+++..+-.+.+......|-.-..+--..|+.+.+-.++.+..+.. -.++...+-+........|+.+.|..
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence            35788888888877666655455666666677777788888888888777541 13455566666777777888888888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHH
Q 010320          248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-------NTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      -++++.+.+. .+..+......+|.+.|++.++..+...|.+.|+--|.       .+|..+++-....+..+.-...|+
T Consensus       175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            8877777654 36677777888888888888888888888877765443       233333333322222222222222


Q ss_pred             HHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010320          321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV  400 (513)
Q Consensus       321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  400 (513)
                      ...+. ...+...                                    ...++.-+.+.|+.++|.++.++..++...+
T Consensus       254 ~~pr~-lr~~p~l------------------------------------~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~  296 (400)
T COG3071         254 NQPRK-LRNDPEL------------------------------------VVAYAERLIRLGDHDEAQEIIEDALKRQWDP  296 (400)
T ss_pred             hccHH-hhcChhH------------------------------------HHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence            22111 0111111                                    2245666667777777777777777665444


Q ss_pred             chHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320          401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAE-SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM  479 (513)
Q Consensus       401 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  479 (513)
                      .    . ...-.+.+.++.+.-++..+.-. ..+-.|  ..+.+|...|.+.+.|.+|...|+...+  ..|+..+|+.+
T Consensus       297 ~----L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~l  367 (400)
T COG3071         297 R----L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAEL  367 (400)
T ss_pred             h----H-HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHH
Confidence            3    1 12234556666666666555443 333333  5667777777788888888888876554  35777788888


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010320          480 YYAYATCGQRRKVNQVLGLMCKNGYDVP  507 (513)
Q Consensus       480 i~~~~~~g~~~~A~~~~~~m~~~g~~p~  507 (513)
                      .+++.+.|+..+|.+++++-...-..|+
T Consensus       368 a~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         368 ADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            8888888888888777777654444443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.50  E-value=4.5e-10  Score=110.48  Aligned_cols=330  Identities=12%  Similarity=0.017  Sum_probs=233.4

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010320          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME  246 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~  246 (513)
                      ...|++++|.+++.++.+..+.+...|.+|...|-..|+.+++...+-..-.  -.+-|..-|..+.....+.|++++|.
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHH
Confidence            3449999999999999988877888999999999999999999887766553  23556788888888899999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010320          247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGNLPRMEKIYELV  322 (513)
Q Consensus       247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~  322 (513)
                      -.|.+.++... ++...+---+..|-+.|+...|.+-|.+|.+..-..|    ......+++.+...++-+.|.+.++..
T Consensus       228 ~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~  306 (895)
T KOG2076|consen  228 YCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA  306 (895)
T ss_pred             HHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999988754 3555555566778889999999999999887431112    223344566677777778888888776


Q ss_pred             Hh-ccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC-----------------------CcccchHH-HHHHH
Q 010320          323 KH-HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI-PEK-----------------------EYRPWLNV-LLIRV  376 (513)
Q Consensus       323 ~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~-----------------------~~~~~~~~-~li~~  376 (513)
                      .. .+-..+...++.++..|.+...++.+.......... .++                       +....+-. -+.-+
T Consensus       307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic  386 (895)
T KOG2076|consen  307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC  386 (895)
T ss_pred             HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence            55 223335556777888888877777665554333320 001                       11111111 12222


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHH
Q 010320          377 YAKEDCLEEMEKSINDAFEHKT-SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE  455 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  455 (513)
                      +......+...-+......... ...+...|.-+..+|...|++.+|+.++..+.....--+...|--+..+|...|.++
T Consensus       387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e  466 (895)
T KOG2076|consen  387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE  466 (895)
T ss_pred             hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence            3333333333333333333322 233567888999999999999999999999986655556778889999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +|.+.|+...... +-+...--.|-..+.+.|+.++|.+.++.|.
T Consensus       467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9999999998754 3344555577788999999999999999876

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=4.8e-11  Score=113.56  Aligned_cols=285  Identities=10%  Similarity=-0.014  Sum_probs=151.9

Q ss_pred             CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCh-hHHHHH
Q 010320          171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLV-DHMEAA  248 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~-~~A~~~  248 (513)
                      +..+|...|+.++..-..+..+...+..+|...+++++|.++|+.+++.... .-+...|.+.+--+-+.=.+ -.|..+
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L  413 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL  413 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence            4456666666644443334455555666666666666666666666543111 11345565555433221111 012222


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 010320          249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD  327 (513)
Q Consensus       249 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  327 (513)
                      .+.++     -...+|.++.++|.-.++.+.|++.|++..+  +.| ..++|+.+..-+....++|.|...|........
T Consensus       414 i~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  414 IDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            22222     2445666666666666666666666666665  334 466666666666666666666666665554311


Q ss_pred             CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010320          328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR  407 (513)
Q Consensus       328 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  407 (513)
                       .+-..|--+.-.|.+.++++.|+--++...++.+.+.+...  .+...+-+.|+.|+|++++++...-....+-.. | 
T Consensus       487 -rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~--~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~-~-  561 (638)
T KOG1126|consen  487 -RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILC--HIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK-Y-  561 (638)
T ss_pred             -hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHh--hhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH-H-
Confidence             12223333444566666666665555555555544443332  244555566666777777666665332222111 2 


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010320          408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       408 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  468 (513)
                      -.+..+...+++++|+..++++++.-.+ +...|..+...|-+.|+.+.|+.-|--+.+.+
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            2344455566677777777766654322 33445556666666777777766666665544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.49  E-value=2.1e-10  Score=99.83  Aligned_cols=291  Identities=14%  Similarity=0.097  Sum_probs=193.3

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC-C---CHhHHHHHHHHHHHcC
Q 010320          129 QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-K---TIGTYNALLGAYMYNG  204 (513)
Q Consensus       129 ~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~---~~~~~~~li~~~~~~g  204 (513)
                      -+...+++|.+.|-.|.+..    +-+.++--+|.+.|-+.|.+|.|+.+.+.+.++.- +   -....-.|..-|...|
T Consensus        46 LLs~Q~dKAvdlF~e~l~~d----~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG  121 (389)
T COG2956          46 LLSNQPDKAVDLFLEMLQED----PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG  121 (389)
T ss_pred             HhhcCcchHHHHHHHHHhcC----chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence            34789999999999987732    23555666888999999999999999999887522 2   1345566778899999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHccCHHHH
Q 010320          205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTAWMWGKV  280 (513)
Q Consensus       205 ~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a  280 (513)
                      -+|.|..+|..+... | .--......|+..|-...+|++|+++-+++.+.|-.+..    .-|.-|...+....+.+.|
T Consensus       122 l~DRAE~~f~~L~de-~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A  199 (389)
T COG2956         122 LLDRAEDIFNQLVDE-G-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA  199 (389)
T ss_pred             hhhHHHHHHHHHhcc-h-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence            999999999999864 2 233457788999999999999999999999887654432    2345555555567788899


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010320          281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI  360 (513)
Q Consensus       281 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  360 (513)
                      ..++.+..+.+- -.+..-..+.+.....|+++.|.+.++.+.+.+..--..+...                        
T Consensus       200 ~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~------------------------  254 (389)
T COG2956         200 RELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM------------------------  254 (389)
T ss_pred             HHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH------------------------
Confidence            999988887542 2344555677788889999999999998888754322333334                        


Q ss_pred             CCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh
Q 010320          361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL  440 (513)
Q Consensus       361 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~  440 (513)
                                  |..+|...|+.++....+.++.+....+.-   -..+-..-....-.+.|..++.+-..  -+|+...
T Consensus       255 ------------L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~---~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~g  317 (389)
T COG2956         255 ------------LYECYAQLGKPAEGLNFLRRAMETNTGADA---ELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRG  317 (389)
T ss_pred             ------------HHHHHHHhCCHHHHHHHHHHHHHccCCccH---HHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHH
Confidence                        445555555555555555555543322221   12222222223334444444443332  2466666


Q ss_pred             HHHHHHHHH---hcCCHHHHHHHHHHHHhC
Q 010320          441 YHSKMVMYA---SQRRVEEMESVLKEMENY  467 (513)
Q Consensus       441 ~~~li~~~~---~~g~~~~A~~~~~~m~~~  467 (513)
                      +..+|+.-.   ..|...+-..+++.|...
T Consensus       318 f~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         318 FHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             HHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            777766554   344556666666666654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.47  E-value=1e-09  Score=108.78  Aligned_cols=337  Identities=9%  Similarity=-0.025  Sum_probs=179.1

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG----LSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      |...+.+.|+++.+...|+.+.+..+.+..+...|...|+..+    ..++|..++.+..+.  .+.|...|-.+...+-
T Consensus       348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e  425 (1018)
T KOG2002|consen  348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLE  425 (1018)
T ss_pred             hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHH
Confidence            3444445555555555555554443334444444444444443    233344444333322  1233334443333333


Q ss_pred             hcCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC---CCCCCH------HHHHHHHH
Q 010320          238 RLLLVDHMEAAFQEI----KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG---PVMPDT------NTYLLLLR  304 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~t~~~ll~  304 (513)
                      ... ...++.+|...    ...+-.+-....|.+...+...|++++|...|+.....   ...+|.      .+--.+..
T Consensus       426 ~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar  504 (1018)
T KOG2002|consen  426 QTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR  504 (1018)
T ss_pred             hcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence            222 22223333322    23333355666677777777777788777777776543   111222      22223344


Q ss_pred             HHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc------------------
Q 010320          305 GYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR------------------  366 (513)
Q Consensus       305 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------------------  366 (513)
                      .+-..++.+.|.+.|..+.+.. +.-+..|-.+..+....+....+...++..-.....+..                  
T Consensus       505 l~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a  583 (1018)
T KOG2002|consen  505 LLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA  583 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence            4445556666666666665531 111112222221111112222222211111111111111                  


Q ss_pred             --------------cchHH--HHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010320          367 --------------PWLNV--LLIRVYAK------------EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA  418 (513)
Q Consensus       367 --------------~~~~~--~li~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  418 (513)
                                    +.+|+  .|.+.|..            .+..++|+++|.+++.  ..|.+...-|.+.-.++..|+
T Consensus       584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~  661 (1018)
T KOG2002|consen  584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGR  661 (1018)
T ss_pred             ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccC
Confidence                          12222  23333322            1356778888888777  445556566777778888889


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 010320          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY-KIDCSKKTFWIMYYAYATCGQRRKVNQVLG  497 (513)
Q Consensus       419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  497 (513)
                      +..|..+|....+.... +..+|-.+.++|..+|++-.|+++|+...++ .-.-+......|.+++.+.|.+.+|.+.+.
T Consensus       662 ~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll  740 (1018)
T KOG2002|consen  662 FSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL  740 (1018)
T ss_pred             chHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            99999999888776542 4456777888888999999999999876543 445567788888899999999999888877


Q ss_pred             HHHHCCCC
Q 010320          498 LMCKNGYD  505 (513)
Q Consensus       498 ~m~~~g~~  505 (513)
                      ..+.....
T Consensus       741 ~a~~~~p~  748 (1018)
T KOG2002|consen  741 KARHLAPS  748 (1018)
T ss_pred             HHHHhCCc
Confidence            76655433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.47  E-value=1.8e-09  Score=106.30  Aligned_cols=361  Identities=8%  Similarity=0.002  Sum_probs=253.0

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010320          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS  211 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  211 (513)
                      ++.+.|.+++..+.++    .+.....|-.|..+|-..|+.+++...+-..--..+.|...|-.+.....+.|+++.|.-
T Consensus       153 g~~eeA~~i~~EvIkq----dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQ----DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             CCHHHHHHHHHHHHHh----CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence            6888899999988876    356888999999999999999999888877666666688999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHccCHHHHHHHHHHH
Q 010320          212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY----NYLIAGYMTAWMWGKVEEIYQMM  287 (513)
Q Consensus       212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m  287 (513)
                      .|.+..+.  -+++...+---+..|-+.|+...|.+-|.++.......|..-+    -.++..+...++-+.|.+.++..
T Consensus       229 cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~  306 (895)
T KOG2076|consen  229 CYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA  306 (895)
T ss_pred             HHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999874  3556666666778888999999999999999876442232222    33455666777778888888877


Q ss_pred             HcC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---------------------------cCCCcHHHHHHHHH
Q 010320          288 KAG-PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH---------------------------VDGKEFPLIRAMIC  339 (513)
Q Consensus       288 ~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------------------~~~~~~~~~~~li~  339 (513)
                      ... +-.-+...++.++..+.+...++.|......+...                           +..++..++. ++-
T Consensus       307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~i  385 (895)
T KOG2076|consen  307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMI  385 (895)
T ss_pred             HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-Hhh
Confidence            652 22335567778888888888888888777666551                           1223333312 222


Q ss_pred             HHHhcCChhHHHHHHHHHHhCC-CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010320          340 AYSKCSVTDRIKKIEALMRLIP-EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA  418 (513)
Q Consensus       340 ~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  418 (513)
                      ++......+..+.....+.+-. ........+.-+..+|...|++.+|+.+|..+....... +..+|-.+..+|...|.
T Consensus       386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~~~l~e  464 (895)
T KOG2076|consen  386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCYMELGE  464 (895)
T ss_pred             hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHHHHHhh
Confidence            2333332222222222221111 111222224458889999999999999999887754433 36678889999999999


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHh
Q 010320          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY--------KIDCSKKTFWIMYYAYATCGQRR  490 (513)
Q Consensus       419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~li~~~~~~g~~~  490 (513)
                      ++.|.+.++........ +...--.|-..+-+.|+.++|.++++.+...        +..|+...-......+.+.|+.+
T Consensus       465 ~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E  543 (895)
T KOG2076|consen  465 YEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE  543 (895)
T ss_pred             HHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence            99999999988754421 3344456667788999999999999986532        35566666666777888889888


Q ss_pred             HHHHHHHHHHH
Q 010320          491 KVNQVLGLMCK  501 (513)
Q Consensus       491 ~A~~~~~~m~~  501 (513)
                      +-+.+-..|..
T Consensus       544 ~fi~t~~~Lv~  554 (895)
T KOG2076|consen  544 EFINTASTLVD  554 (895)
T ss_pred             HHHHHHHHHHH
Confidence            76666555544

>PF13041 PPR_2: PPR repeat family

Probab=99.46  E-value=1.6e-13  Score=88.72  Aligned_cols=49  Identities=37%  Similarity=0.667  Sum_probs=27.0

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010320          259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA  307 (513)
Q Consensus       259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~  307 (513)
                      ||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.46  E-value=1.5e-09  Score=97.55  Aligned_cols=269  Identities=9%  Similarity=0.003  Sum_probs=195.4

Q ss_pred             HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH
Q 010320          202 YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE  281 (513)
Q Consensus       202 ~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  281 (513)
                      ..|++.+|.++..+-.+. +- -....|..-..+-...|+.+.+..++.+.-+..-.++...+-+........|+++.|.
T Consensus        96 ~eG~~~qAEkl~~rnae~-~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~  173 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEH-GE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR  173 (400)
T ss_pred             hcCcHHHHHHHHHHhhhc-Cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence            369999999999987754 43 3345677777888899999999999999988644567778888888899999999999


Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 010320          282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP  361 (513)
Q Consensus       282 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  361 (513)
                      .-++++.+.+- -+........++|.+.|++.....++..+.+.+.-.+...-.-=.             +++       
T Consensus       174 ~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~-------------~a~-------  232 (400)
T COG3071         174 ENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ-------------QAW-------  232 (400)
T ss_pred             HHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH-------------HHH-------
Confidence            99999888652 357788899999999999999999999999988765544211000             000       


Q ss_pred             CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhH
Q 010320          362 EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLY  441 (513)
Q Consensus       362 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~  441 (513)
                               ..++.-....+..+.-...+++.-.+-  ..++.+-.+++.-+.+.|+.++|.+++++..+.+..|+... 
T Consensus       233 ---------~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~-  300 (400)
T COG3071         233 ---------EGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR-  300 (400)
T ss_pred             ---------HHHHHHHhccccchHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH-
Confidence                     012222222233333334444433321  12344566788889999999999999999999998877322 


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCC
Q 010320          442 HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF  511 (513)
Q Consensus       442 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  511 (513)
                         .-.+.+-++.+.-++..++-.... +-++..+.+|..-|.+++.|.+|.+.|+...+  ..|+.++|
T Consensus       301 ---~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~  364 (400)
T COG3071         301 ---LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDY  364 (400)
T ss_pred             ---HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhH
Confidence               234567788888888877766442 34557889999999999999999999996654  45666655

>PF13041 PPR_2: PPR repeat family

Probab=99.45  E-value=2.4e-13  Score=87.90  Aligned_cols=50  Identities=38%  Similarity=0.644  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010320          224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT  273 (513)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  273 (513)
                      ||..+||++|++|++.|++++|.++|++|.+.|+.||..||++||++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            66677777777777777777777777777777777777777777776653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.45  E-value=1.3e-09  Score=108.06  Aligned_cols=339  Identities=10%  Similarity=0.020  Sum_probs=197.8

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC----CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChH
Q 010320          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN----NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSD  207 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~  207 (513)
                      +..+.+...|+.+.+.    .+-+..+...|...|+..+    ..++|..++....+..+.|...|-.+...+-...-+.
T Consensus       356 ~dle~s~~~fEkv~k~----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~  431 (1018)
T KOG2002|consen  356 GDLEESKFCFEKVLKQ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA  431 (1018)
T ss_pred             chHHHHHHHHHHHHHh----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH
Confidence            3445566666666553    2334555555555555553    4566677776666655556677766666665543333


Q ss_pred             HHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH-------HHHHHHHHHHHH
Q 010320          208 KCQSLFRDL----KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS---NLSPNV-------FTYNYLIAGYMT  273 (513)
Q Consensus       208 ~A~~~~~~m----~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-------~~~~~li~~~~~  273 (513)
                       ++..|...    ... +-.+-....|.+...+...|+++.|...|+..+..   ...+|.       .-|| +...+-.
T Consensus       432 -sL~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~  508 (1018)
T KOG2002|consen  432 -SLDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEE  508 (1018)
T ss_pred             -HHHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHh
Confidence             35555432    222 33466667777777777777777777777766543   111222       1222 2223333


Q ss_pred             ccCHHHHHHHHHHHHcCC---------------------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010320          274 AWMWGKVEEIYQMMKAGP---------------------------------VMPDTNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       274 ~g~~~~a~~~~~~m~~~g---------------------------------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      .++.+.|.+.|..+.+..                                 ..-+...++.+...+.+..++.-|.+-|.
T Consensus       509 l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~  588 (1018)
T KOG2002|consen  509 LHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFE  588 (1018)
T ss_pred             hhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence            445555555555554421                                 01122233333334444444444444333


Q ss_pred             HHHhc-cCCCcHHHHHHHHHHHHhc------------CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHH
Q 010320          321 LVKHH-VDGKEFPLIRAMICAYSKC------------SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME  387 (513)
Q Consensus       321 ~~~~~-~~~~~~~~~~~li~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  387 (513)
                      .+.+. ...+|..+.-+|.+.|...            +..++|.+.+....+..+++.-.- + -+.-.++..|++.+|.
T Consensus       589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA-N-GIgiVLA~kg~~~~A~  666 (1018)
T KOG2002|consen  589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA-N-GIGIVLAEKGRFSEAR  666 (1018)
T ss_pred             HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc-c-chhhhhhhccCchHHH
Confidence            33221 1124555555555544321            222333333333333333333322 3 3677788999999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE-SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      .+|.++.+.....  ..+|-.+.++|...|++..|+++|+... +....-+....+.|..++.+.|++.+|.+.+.....
T Consensus       667 dIFsqVrEa~~~~--~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  667 DIFSQVREATSDF--EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             HHHHHHHHHHhhC--CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            9999999865533  3358889999999999999999999764 455556778889999999999999999999988887


Q ss_pred             CCCCCCHHHHHHHHH
Q 010320          467 YKIDCSKKTFWIMYY  481 (513)
Q Consensus       467 ~~~~p~~~~~~~li~  481 (513)
                      ....-...-||..+-
T Consensus       745 ~~p~~~~v~FN~a~v  759 (1018)
T KOG2002|consen  745 LAPSNTSVKFNLALV  759 (1018)
T ss_pred             hCCccchHHhHHHHH
Confidence            654444555665443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.41  E-value=9.8e-09  Score=97.65  Aligned_cols=327  Identities=8%  Similarity=-0.001  Sum_probs=225.2

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010320          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ..|.+.+.++-|..+|....+-.+.+...|......--..|..+.-..+|++....  ++-....|-...+-+-..|++.
T Consensus       524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~  601 (913)
T KOG0495|consen  524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVP  601 (913)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcH
Confidence            33445555555555555555443334555555555555556666666666666643  3444445555556667778888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320          244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      .|..++.+..+.... +...|-.-+..-....+++.|..+|.+...  ..|+...|.--+..---.++.++|.+++++..
T Consensus       602 ~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l  678 (913)
T KOG0495|consen  602 AARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEAL  678 (913)
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence            888888888876543 677788888888888888999988888776  34677777666666666788899999998887


Q ss_pred             hccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010320          324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV  403 (513)
Q Consensus       324 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  403 (513)
                      +. ++.-...|-.+...+-+.++++.|.+++..-.+..+..+.-|.  .+...=-+.|++-.|..+++....++  |.+.
T Consensus       679 k~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl--lLakleEk~~~~~rAR~ildrarlkN--Pk~~  753 (913)
T KOG0495|consen  679 KS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL--LLAKLEEKDGQLVRARSILDRARLKN--PKNA  753 (913)
T ss_pred             Hh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH--HHHHHHHHhcchhhHHHHHHHHHhcC--CCcc
Confidence            76 3334456777777888888888888777665555566666664  45555566778889999998877754  4456


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----------------------------CcccHhhHHHHHHHHHhcCCH
Q 010320          404 RIMRCIVSSYFRCNAVDKLANFVKRAESAG-----------------------------WRLCRSLYHSKMVMYASQRRV  454 (513)
Q Consensus       404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----------------------------~~p~~~~~~~li~~~~~~g~~  454 (513)
                      ..|-..|+.=.+.|+.+.|..+..+..+.-                             +.-|....-.+...|-...++
T Consensus       754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~  833 (913)
T KOG0495|consen  754 LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKI  833 (913)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence            678888888889999998888777654321                             112333344445556667778


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       455 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      +.|.+.|++....+ +-+..+|..+...+.++|.-+.-.+++++...
T Consensus       834 ~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  834 EKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            88888888888766 44567788888888888888887888777654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=4.5e-09  Score=95.98  Aligned_cols=301  Identities=11%  Similarity=0.019  Sum_probs=212.7

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH-----------------------------HHHHHHHhc
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN-----------------------------TLISVFGRL  239 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~-----------------------------~li~~~~~~  239 (513)
                      |...+-.....+-+.|...+|+..|......  .+-.-..|-                             .+..++...
T Consensus       163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el  240 (559)
T KOG1155|consen  163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL  240 (559)
T ss_pred             hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence            5444444445566677778787777666532  122222221                             122344444


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-C-CCHHHHHHHHHHHHhcCChHHHHH
Q 010320          240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-M-PDTNTYLLLLRGYAHSGNLPRMEK  317 (513)
Q Consensus       240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~-p~~~t~~~ll~~~~~~g~~~~a~~  317 (513)
                      .+.+++..-.+.....|+.-+...-+....+.-...++|+|+.+|+++.++.- + -|..+|+.++-.-....+    +.
T Consensus       241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls  316 (559)
T KOG1155|consen  241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LS  316 (559)
T ss_pred             HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HH
Confidence            56667777777777777654444444444445556788888888888877531 1 156777777644332222    22


Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010320          318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK  397 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  397 (513)
                      ++.+-.-.-..--..|+..+.+-|+-.++.++|...++..-++.++-...|+  .|..-|....+...|++-++..++  
T Consensus       317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWT--LmGHEyvEmKNt~AAi~sYRrAvd--  392 (559)
T KOG1155|consen  317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWT--LMGHEYVEMKNTHAAIESYRRAVD--  392 (559)
T ss_pred             HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHH--HhhHHHHHhcccHHHHHHHHHHHh--
Confidence            2222111101112345566667777778778888888877788888888886  788999999999999999999888  


Q ss_pred             CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320          398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW  477 (513)
Q Consensus       398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~  477 (513)
                      ..|.|...|-.|.++|.-.+...=|+-+|++..+.. +-|...|.+|.++|.+.++.++|++.|......| ..+...+.
T Consensus       393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~  470 (559)
T KOG1155|consen  393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV  470 (559)
T ss_pred             cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence            678889999999999999999999999999988655 3478999999999999999999999999998877 44678899


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          478 IMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       478 ~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      .|.+.|-+.++.++|...|++-.+
T Consensus       471 ~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  471 RLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999998887654

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.37  E-value=8.5e-11  Score=114.90  Aligned_cols=263  Identities=10%  Similarity=0.077  Sum_probs=127.3

Q ss_pred             CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHH
Q 010320          150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT  228 (513)
Q Consensus       150 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~  228 (513)
                      .|+.|+..+|..+|.-|+..|+++.|- +|.-|.-+..| +...++.++.+...+++.+.+.            .|...|
T Consensus        19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDt   85 (1088)
T KOG4318|consen   19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADT   85 (1088)
T ss_pred             hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhH
Confidence            456677777777777777777776666 66666666555 5666666666666666665554            456666


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHH
Q 010320          229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK-AGPVMPDTNTYLLLLRGYA  307 (513)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~  307 (513)
                      |..|+.+|...||+..    |++..+        -.-.+...+...|-......++..+. ..+.-||..+   ++.-..
T Consensus        86 yt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv  150 (1088)
T KOG4318|consen   86 YTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLV  150 (1088)
T ss_pred             HHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHH
Confidence            7777777777766655    222221        01112333444444444444443321 1233344432   222233


Q ss_pred             hcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHH
Q 010320          308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME  387 (513)
Q Consensus       308 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  387 (513)
                      -.|-++.+.+++..+...........   +++-....  ....++.....+...+ ...+.++..++.+-..+|+.+.|.
T Consensus       151 ~eglwaqllkll~~~Pvsa~~~p~~v---fLrqnv~~--ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak  224 (1088)
T KOG4318|consen  151 LEGLWAQLLKLLAKVPVSAWNAPFQV---FLRQNVVD--NTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAK  224 (1088)
T ss_pred             HHHHHHHHHHHHhhCCcccccchHHH---HHHHhccC--CchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHH
Confidence            34445555555544322111000000   12221111  1122233333333333 333333344555555555666666


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320          388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  450 (513)
                      .++.+|.++|....... |-.++-+   .++...+..+++.|.+.|+.|+..|+...+..+..
T Consensus       225 ~ll~emke~gfpir~Hy-FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~  283 (1088)
T KOG4318|consen  225 NLLYEMKEKGFPIRAHY-FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS  283 (1088)
T ss_pred             HHHHHHHHcCCCccccc-chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence            66666655555443322 2223222   55555555555555555666665555555444444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.36  E-value=1.1e-09  Score=97.79  Aligned_cols=199  Identities=12%  Similarity=-0.016  Sum_probs=148.0

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      ....+..+...+...|++++|.+.+++..+..+.+...+..+...+...|++++|.+.|++..+.  .+.+...+..+..
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence            45677778888888899999999998887766557788888888888889999999999888764  2445667778888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010320          235 VFGRLLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP  313 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~  313 (513)
                      .+...|++++|.+.|++....... .....+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|+++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence            888888999999988888764322 234566667778888888888888888877643 224567778888888888888


Q ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320          314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      +|...+++..+. .+.+...+..+...+...|+.+.+....+.+
T Consensus       187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            888888887776 3345555556666666667666665554433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.35  E-value=3.2e-09  Score=103.40  Aligned_cols=132  Identities=17%  Similarity=0.118  Sum_probs=106.4

Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010320          367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV  446 (513)
Q Consensus       367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  446 (513)
                      .|++..+...|...|++++|++.+++.++.  .|+.+..|..-...+-+.|++++|.+.++........ |...-+-.+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aK  270 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAK  270 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHH
Confidence            355556778888999999999999999984  4666778888899999999999999999999877754 6777777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          447 MYASQRRVEEMESVLKEMENYKIDCSKK------TF--WIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       447 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      .+.++|++++|.+++....+.+..|-..      .|  .....+|.+.|++..|++-|..+.+
T Consensus       271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            8899999999999999998877544322      22  2345789999999999988776543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.33  E-value=1.5e-09  Score=97.09  Aligned_cols=202  Identities=12%  Similarity=0.094  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 010320          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA  340 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  340 (513)
                      ...+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|++++|.+.+++..+... .+...+.     
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~-----  103 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLN-----  103 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHH-----
Confidence            4555666666666666666666666665532 12345555666666666666666666666555321 1222222     


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHH
Q 010320          341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD  420 (513)
Q Consensus       341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  420 (513)
                                                     .+...+...|++++|.+.+++.......+.....+..+...+...|+++
T Consensus       104 -------------------------------~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  152 (234)
T TIGR02521       104 -------------------------------NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD  152 (234)
T ss_pred             -------------------------------HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence                                           2455556667777777777776654333333445666777788888888


Q ss_pred             HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       421 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +|.+.+.+..+.... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus       153 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       153 KAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            888888887765422 4556777788888888888888888888766 24566777778888888888888888887775


Q ss_pred             HC
Q 010320          501 KN  502 (513)
Q Consensus       501 ~~  502 (513)
                      +.
T Consensus       231 ~~  232 (234)
T TIGR02521       231 KL  232 (234)
T ss_pred             hh
Confidence            43

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=1.9e-08  Score=92.53  Aligned_cols=356  Identities=9%  Similarity=-0.045  Sum_probs=234.5

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          132 SRPRLALEVLNWRRRQAGYGTPMT-KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      +.++.|...+.|...     ..|| +.-|...-.+|...|+|+++.+.-....+.++.-+..+..-..++-..|++++|+
T Consensus       129 kkY~eAIkyY~~AI~-----l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal  203 (606)
T KOG0547|consen  129 KKYDEAIKYYTQAIE-----LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL  203 (606)
T ss_pred             ccHHHHHHHHHHHHh-----cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHH
Confidence            578899999999987     4567 7778888899999999999998888777765544555555555666666666554


Q ss_pred             HH----------------------HHH---------HHH-hCCCCCCHHHHHHHHHHHHhc--------C----------
Q 010320          211 SL----------------------FRD---------LKK-EANISPSIVTYNTLISVFGRL--------L----------  240 (513)
Q Consensus       211 ~~----------------------~~~---------m~~-~~g~~p~~~~~~~li~~~~~~--------g----------  240 (513)
                      .=                      +++         |.+ +.-+-|+....++....+...        +          
T Consensus       204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~  283 (606)
T KOG0547|consen  204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA  283 (606)
T ss_pred             HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence            31                      111         110 011234444333333333110        0          


Q ss_pred             ----------ChhHHHHHHHHHHH-CCCCC--C---------HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH
Q 010320          241 ----------LVDHMEAAFQEIKD-SNLSP--N---------VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT  298 (513)
Q Consensus       241 ----------~~~~A~~~~~~m~~-~g~~p--~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  298 (513)
                                .+..|...+.+-.. ....+  +         ..+.+.....+.-.|+.-.|.+-|+..+...-.++ ..
T Consensus       284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~l  362 (606)
T KOG0547|consen  284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SL  362 (606)
T ss_pred             HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hH
Confidence                      11222222211110 00011  1         11122222233446888899999999887543322 23


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Q 010320          299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA  378 (513)
Q Consensus       299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  378 (513)
                      |.-+..+|....+.++.++.|.+..+.+. .+..+|..=...+.-.++++.|..-++....+.+.+..+++  -+..+.-
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i--Ql~~a~Y  439 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI--QLCCALY  439 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH--HHHHHHH
Confidence            77888889999999999999999888643 35556665566666666777777667766777777776654  4566666


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-----ccHhhH--HHHHHHHHhc
Q 010320          379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR-----LCRSLY--HSKMVMYASQ  451 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~--~~li~~~~~~  451 (513)
                      +.++++++...|++..++  -|..+.+|+.....+...+++++|.+.|+..++....     .+...+  -.++.. -=.
T Consensus       440 r~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk  516 (606)
T KOG0547|consen  440 RQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWK  516 (606)
T ss_pred             HHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chh
Confidence            788999999999999885  3555677999999999999999999999988654322     122111  112111 124


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +++..|.+++++..+.+ +-....|..|...-.+.|+.++|+++|++-.
T Consensus       517 ~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  517 EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            89999999999999887 4456689999999999999999999998753

>PRK12370 invasion protein regulator; Provisional

Probab=99.31  E-value=1.9e-09  Score=108.54  Aligned_cols=115  Identities=11%  Similarity=-0.058  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhccCCCHhHHHHHHHHHHH---------cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010320          172 VDLAADLFAEAANKHLKTIGTYNALLGAYMY---------NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV  242 (513)
Q Consensus       172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~  242 (513)
                      +++|.++|++..+..+.+...|..+..+|..         .+++++|...+++..+.  -+-+...+..+...+...|++
T Consensus       277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCH
Confidence            3455555555554443344444444333221         12244555555544432  122334444444444445555


Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ++|+..|++..+.+. .+...|..+...+...|++++|+..+++..+
T Consensus       355 ~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~  400 (553)
T PRK12370        355 IVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLK  400 (553)
T ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            555555555444321 1233444444445555555555555555444

>PRK12370 invasion protein regulator; Provisional

Probab=99.29  E-value=5.3e-09  Score=105.37  Aligned_cols=263  Identities=9%  Similarity=-0.089  Sum_probs=178.0

Q ss_pred             chhHHHHHHHHHc-------CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhc---------ccCCHHHHHHHHHHH
Q 010320          119 NGYAFVELMKQLG-------SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG---------RINNVDLAADLFAEA  182 (513)
Q Consensus       119 ~~~~~~~~l~~~~-------~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~---------~~g~~~~a~~~~~~m  182 (513)
                      +...|...+++..       ...+.|.+.|+...+..    |-+...|..+..++.         ..+++++|...+++.
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld----P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A  330 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS----PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA  330 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            3445556665541       12356888888776532    224555655554433         335589999999999


Q ss_pred             HhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 010320          183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF  262 (513)
Q Consensus       183 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  262 (513)
                      .+.++.+...|..+...+...|++++|...|++..+.  -+.+...|..+...+...|++++|+..+++..+.... +..
T Consensus       331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~  407 (553)
T PRK12370        331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA  407 (553)
T ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence            9988879999999999999999999999999999874  2344678888999999999999999999999986543 223


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 010320          263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY  341 (513)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  341 (513)
                      .+..++..+...|++++|+..+++..... .| +...+..+..++...|+.++|...++++... .+.+....+.+...|
T Consensus       408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~  485 (553)
T PRK12370        408 AGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEY  485 (553)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHH
Confidence            34445556777899999999999987643 24 3556777888889999999999999887654 223444455666667


Q ss_pred             HhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010320          342 SKCSVTDRIKKIEALMRLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH  396 (513)
Q Consensus       342 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  396 (513)
                      ...|+  .+...++.+.+.... ...+.   .+-..|.-.|+-+.+..+ +++.+.
T Consensus       486 ~~~g~--~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        486 CQNSE--RALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             hccHH--HHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhcc
Confidence            77663  555544433332222 21111   133334444555554444 554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.27  E-value=1e-06  Score=84.34  Aligned_cols=343  Identities=7%  Similarity=-0.021  Sum_probs=206.4

Q ss_pred             CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH
Q 010320          150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI  226 (513)
Q Consensus       150 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~  226 (513)
                      .|+..+...|-.=...|-+.|.+-.+..+......-|+.   -..+|+.-...|.+.+.++-|..+|....+-  .+-+.
T Consensus       473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~  550 (913)
T KOG0495|consen  473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKK  550 (913)
T ss_pred             cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchh
Confidence            334444455544444555555555555555555544442   2345566666666666677777777766653  34455


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010320          227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY  306 (513)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  306 (513)
                      ..|......--..|..+....+|++....-. .....|-....-+-..|+...|..++.+..+.. .-+...|...+..-
T Consensus       551 slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle  628 (913)
T KOG0495|consen  551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLE  628 (913)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHh
Confidence            5666666666666777777777777765422 234445444555666777777777777776643 12466677777777


Q ss_pred             HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHH
Q 010320          307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM  386 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  386 (513)
                      .....++.|..+|.+....  .++..+|.--+....-.+..++|.+..+...+.-+.-  .-.+.++...+-+.++++.|
T Consensus       629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f--~Kl~lmlGQi~e~~~~ie~a  704 (913)
T KOG0495|consen  629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF--HKLWLMLGQIEEQMENIEMA  704 (913)
T ss_pred             hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch--HHHHHHHhHHHHHHHHHHHH
Confidence            7777777777777766653  4556666555555555555554444332222211111  11133455666667777777


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      .+.|..-.+  ..|..+-.|-.+...=.+.|++-.|..++++..-.+.+ +...|-..|.+-.+.|..+.|..+..+..+
T Consensus       705 R~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ  781 (913)
T KOG0495|consen  705 REAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ  781 (913)
T ss_pred             HHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777765554  33444556666666666777788888888877665543 667777788888888888888776655443


Q ss_pred             C-----------------------------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          467 Y-----------------------------KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       467 ~-----------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      .                             ...-|.+..-.+...|....++++|.+.|.+..+.+
T Consensus       782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d  847 (913)
T KOG0495|consen  782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD  847 (913)
T ss_pred             hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            2                             122355556666666777777777888777766543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=4.5e-08  Score=91.84  Aligned_cols=275  Identities=9%  Similarity=-0.027  Sum_probs=218.8

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010320          224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL  303 (513)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll  303 (513)
                      -|........+-|-..+++.+..++++++.+.. ++....+..-|.++...|+..+-..+=.+|.+.- +-...+|-++.
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg  319 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG  319 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence            344444555566677889999999999998764 3577778888889999999888888888887742 22478999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010320          304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL  383 (513)
Q Consensus       304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  383 (513)
                      --|...|+.++|.++|.+....+. .-...|-.+...|.-.|.-|.|..++....+.-.....|..|  +..-|.+.+++
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~  396 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNL  396 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccH
Confidence            999999999999999988766432 234568888899999999999998887777766666666653  66778889999


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCc--ccHhhHHHHHHHHHhcCCHHHH
Q 010320          384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWR--LCRSLYHSKMVMYASQRRVEEM  457 (513)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~--p~~~~~~~li~~~~~~g~~~~A  457 (513)
                      +.|.+.|.+...  ..|.++-+++-+.-.....+.+.+|..+|+.....    +-+  --..+++.|..+|.+.+.+++|
T Consensus       397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA  474 (611)
T KOG1173|consen  397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA  474 (611)
T ss_pred             HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence            999999988877  66777778888877778889999999999976521    111  1334578888999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010320          458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV  508 (513)
Q Consensus       458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  508 (513)
                      +..+++..... +-|..+|.++.-.|...|+++.|.+.|.+..  ++.|+.
T Consensus       475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n  522 (611)
T KOG1173|consen  475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDN  522 (611)
T ss_pred             HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCcc
Confidence            99999998775 6789999999999999999999999998755  455554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.26  E-value=3.5e-09  Score=101.84  Aligned_cols=238  Identities=14%  Similarity=0.087  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHcC-----CC-CCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhc-----cCC-
Q 010320          262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAG-----PV-MPDTNTY-LLLLRGYAHSGNLPRMEKIYELVKHH-----VDG-  328 (513)
Q Consensus       262 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~-  328 (513)
                      .+...+...|...|+++.|+.+++...+.     |. .|...+. +.+...|...+++++|..+|+++...     |.. 
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            33444555666666666666666554331     21 1222222 22445556666666666666655431     111 


Q ss_pred             -CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-------CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 010320          329 -KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-------EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----  396 (513)
Q Consensus       329 -~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----  396 (513)
                       .-..+++.|-.+|.+.|++++|+...+...++...       .+... .+-++..|+..+++++|..++....+.    
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~-l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ-LSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH-HHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence             11234455555666666666554443322222111       11111 224777788889999999888765541    


Q ss_pred             -C-CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CC--cc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 010320          397 -K-TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GW--RL-CRSLYHSKMVMYASQRRVEEMESVLKEMEN-  466 (513)
Q Consensus       397 -~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-  466 (513)
                       + ..+....+++.|...|...|++++|.++++.+...    +.  .+ ....++.+...|.+.+++++|.++|.+... 
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence             1 12244678999999999999999999999987532    11  12 244577888899999999999999986544 


Q ss_pred             ---CC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          467 ---YK--IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       467 ---~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                         .|  .+-...+|.-|...|.+.|+++.|.++.+...
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               22  12235688899999999999999999987664

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.23  E-value=6.8e-07  Score=82.30  Aligned_cols=356  Identities=10%  Similarity=0.032  Sum_probs=207.5

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010320          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS  211 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  211 (513)
                      +....|..+|+......    .-+...|-..+..=.++.++..|..+|+.....-+.-...|---+..=-..|++..|..
T Consensus        87 ~e~~RARSv~ERALdvd----~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq  162 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVD----YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ  162 (677)
T ss_pred             HHHHHHHHHHHHHHhcc----cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence            34556777887665543    22555677777777788888888888888776533333455555555556688888888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC-
Q 010320          212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-  290 (513)
Q Consensus       212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-  290 (513)
                      +|+.-..   ..|+...|++.|+.=.+-+.++.|..++++..-.  .|++.+|--....=-+.|....+..+|+...+. 
T Consensus       163 iferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~  237 (677)
T KOG1915|consen  163 IFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL  237 (677)
T ss_pred             HHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            8888773   5788888888888888888888888888888753  488888877777777788888888888776652 


Q ss_pred             CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHH--------Hh
Q 010320          291 PV-MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE--FPLIRAMICAYSKCSVTDRIKKIEALM--------RL  359 (513)
Q Consensus       291 g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~--------~~  359 (513)
                      |- .-+...|.+...-=.+...++.|.-+|+...+. ++.+  ...|..+...--+-|+....+.++.-=        .+
T Consensus       238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~  316 (677)
T KOG1915|consen  238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS  316 (677)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence            10 011223333333333455677777777776665 2222  334444444333445444333332111        11


Q ss_pred             CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC------------------------------------------
Q 010320          360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK------------------------------------------  397 (513)
Q Consensus       360 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------------------------------------------  397 (513)
                      -.+-+..+|.  ..+..-...|+.+...++|++.+..-                                          
T Consensus       317 ~np~nYDsWf--dylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~  394 (677)
T KOG1915|consen  317 KNPYNYDSWF--DYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD  394 (677)
T ss_pred             hCCCCchHHH--HHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            1233444442  24444444466666666665555421                                          


Q ss_pred             CCCchHHHHHHH----HHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010320          398 TSVTTVRIMRCI----VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK  473 (513)
Q Consensus       398 ~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  473 (513)
                      ..|....||..+    ..--.++.++..|.+++....  |..|-..+|...|..-.+.+.+|...++++...+-+ +-|.
T Consensus       395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c  471 (677)
T KOG1915|consen  395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC  471 (677)
T ss_pred             hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence            111111111111    111112334444444444333  555666666666666667777777777777777655 4455


Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          474 KTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+|.-....-...|+.+.|..+|+-.+++
T Consensus       472 ~~W~kyaElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  472 YAWSKYAELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence            56665555555666666666666655443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.22  E-value=1.2e-07  Score=86.44  Aligned_cols=348  Identities=10%  Similarity=0.030  Sum_probs=220.8

Q ss_pred             cCChHHHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010320          131 GSRPRLALEVLNWRRRQA-GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC  209 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A  209 (513)
                      .+.+..|+.+++....+- ......-....+.+--.+.+.|+++.|+..|+...+..+.-...||.+|.++ .-|+.++.
T Consensus       250 kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f-~i~d~ekm  328 (840)
T KOG2003|consen  250 KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAF-AIGDAEKM  328 (840)
T ss_pred             hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhhe-ecCcHHHH
Confidence            456677777777665542 1111112233444444567778888888888776665432334455444433 34666777


Q ss_pred             HHHHHHHHHhCC-----------CCCCHHHHH------------------------------------------------
Q 010320          210 QSLFRDLKKEAN-----------ISPSIVTYN------------------------------------------------  230 (513)
Q Consensus       210 ~~~~~~m~~~~g-----------~~p~~~~~~------------------------------------------------  230 (513)
                      .+.|.+|..-.|           -.|+....|                                                
T Consensus       329 keaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~  408 (840)
T KOG2003|consen  329 KEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLES  408 (840)
T ss_pred             HHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHH
Confidence            777766642111           122221110                                                


Q ss_pred             ---------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---------------------H----------H
Q 010320          231 ---------------TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF---------------------T----------Y  264 (513)
Q Consensus       231 ---------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------------------~----------~  264 (513)
                                     .-..-+.+.|+++.|+++++-+.+..-+.-..                     .          |
T Consensus       409 lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry  488 (840)
T KOG2003|consen  409 LKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY  488 (840)
T ss_pred             HHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc
Confidence                           01112568999999999998876542211110                     1          1


Q ss_pred             HHHH-----HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010320          265 NYLI-----AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC  339 (513)
Q Consensus       265 ~~li-----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  339 (513)
                      |.-.     +.....|++++|.+.|++...+.-......|++= -.+-..|++++|++.|-++... ...++.+...+.+
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qian  566 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIAN  566 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence            1100     0012357899999999998875433333333332 2356789999999999776543 2345666667777


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcH
Q 010320          340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV  419 (513)
Q Consensus       340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  419 (513)
                      .|-...+...|.+.+.......+.+.  .+.+-|...|-+.|+-..|.+.+-+-.+  -.|.+..+...|..-|....-+
T Consensus       567 iye~led~aqaie~~~q~~slip~dp--~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~  642 (840)
T KOG2003|consen  567 IYELLEDPAQAIELLMQANSLIPNDP--AILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFS  642 (840)
T ss_pred             HHHHhhCHHHHHHHHHHhcccCCCCH--HHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHH
Confidence            78777666655554433333333332  2233588889999999999887655443  4456677777788888888899


Q ss_pred             HHHHHHHHHHHhcCCcccHhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320          420 DKLANFVKRAESAGWRLCRSLYHSKMVMYA-SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ  488 (513)
Q Consensus       420 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  488 (513)
                      ++++.+|++..  -+.|+..-|..+|..|. +.|++..|..+|+...++ ++-|..+...|++.+...|-
T Consensus       643 ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  643 EKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            99999999865  46799999988876654 799999999999999865 57889999999999887775

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.19  E-value=2.2e-06  Score=79.11  Aligned_cols=302  Identities=12%  Similarity=0.065  Sum_probs=212.8

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYNTLI  233 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li  233 (513)
                      +...|-.....=...+++..|..+|+....-...+...|---+..=.++++++.|..+++.....   -|-+ ..|--.+
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~  148 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYI  148 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHH
Confidence            55566666666667889999999999999877678889999999999999999999999999863   4554 3555566


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010320          234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP  313 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~  313 (513)
                      ..=-..|++..|.++|++-.+  ..|+...|++.|+.=.+-+.++.|..+|+...-  +.|++.+|.-..+-=-+.|.+.
T Consensus       149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~  224 (677)
T KOG1915|consen  149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVA  224 (677)
T ss_pred             HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHH
Confidence            666678999999999999876  479999999999999999999999999999887  5699999999999999999999


Q ss_pred             HHHHHHHHHHhccCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHH--
Q 010320          314 RMEKIYELVKHHVDG--KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKS--  389 (513)
Q Consensus       314 ~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~--  389 (513)
                      .+..+|+...+.-..  -+...+.++..--.++..+++|.-+++....--+++-....+.-+...=-+-|+-....+.  
T Consensus       225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv  304 (677)
T KOG1915|consen  225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV  304 (677)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence            999999988774211  1233444444444556667777777766554444332222222222222233443333322  


Q ss_pred             ------HHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh--hHHHHH-----HHH---HhcCC
Q 010320          390 ------INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS--LYHSKM-----VMY---ASQRR  453 (513)
Q Consensus       390 ------~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~li-----~~~---~~~g~  453 (513)
                            ++.++.  ..|.+..+|--.+..-...|+.+...++++++...- +|-..  .|.-.|     -++   ....+
T Consensus       305 ~KRk~qYE~~v~--~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed  381 (677)
T KOG1915|consen  305 GKRKFQYEKEVS--KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAED  381 (677)
T ss_pred             hhhhhHHHHHHH--hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                  334444  335566677777887888899999999999988543 33211  111111     111   24667


Q ss_pred             HHHHHHHHHHHHh
Q 010320          454 VEEMESVLKEMEN  466 (513)
Q Consensus       454 ~~~A~~~~~~m~~  466 (513)
                      .+.+.++|+...+
T Consensus       382 ~ertr~vyq~~l~  394 (677)
T KOG1915|consen  382 VERTRQVYQACLD  394 (677)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777766655

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.17  E-value=1.2e-08  Score=89.15  Aligned_cols=240  Identities=10%  Similarity=-0.007  Sum_probs=142.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010320          265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC  344 (513)
Q Consensus       265 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  344 (513)
                      +-+..+|.+.|.+.+|++.|+.-.+.  .|-+.||..|-++|.+...++.|+.++.+-.+. ++-|+.....+...+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            44455555555555555555554442  344445555555555555555555555555443 223333333444444444


Q ss_pred             CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHH
Q 010320          345 SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN  424 (513)
Q Consensus       345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  424 (513)
                      ++.+++.+.++...+....++....  .+...|.-.++.|-|+..+++++.-|...  ...|+.+.-+|.-.+++|-++.
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiA--cia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIA--CIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeee--eeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhhhHH
Confidence            5555555555554444444443332  34555666677788888888877766543  4567777777777788888777


Q ss_pred             HHHHHHhcCCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          425 FVKRAESAGWRLC--RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       425 ~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      -|.+....--.|+  ...|-.+-......|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++.....
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            7777654333333  2345555556667788888888888777665 445677777777777888888888888776655


Q ss_pred             CCCCCCCCCC
Q 010320          503 GYDVPVNAFP  512 (513)
Q Consensus       503 g~~p~~~t~~  512 (513)
                      .-..-..+||
T Consensus       459 ~P~m~E~~~N  468 (478)
T KOG1129|consen  459 MPDMAEVTTN  468 (478)
T ss_pred             Cccccccccc
Confidence            4433344443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.11  E-value=3.4e-07  Score=89.46  Aligned_cols=297  Identities=12%  Similarity=0.069  Sum_probs=207.6

Q ss_pred             hHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHH
Q 010320          121 YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAY  200 (513)
Q Consensus       121 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~  200 (513)
                      ..|...+-.=++..+.|++.++.-...    +......+......+.+.|+.++|..+|..+.++++.|..-|..+..+.
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            456555556678999999888764432    3334455567788899999999999999999999888888888888777


Q ss_pred             HHcC-----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010320          201 MYNG-----LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       201 ~~~g-----~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      .-..     ..+...++|+++...   -|.......+.-.+.....+ ..+...+..+...|++   .+|+.|-..|...
T Consensus        83 g~~~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~  156 (517)
T PF12569_consen   83 GLQLQLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP  156 (517)
T ss_pred             hhhcccccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence            3332     578889999999865   35544444333333322223 3456677777788874   3566666666655


Q ss_pred             cCHHHHHHHHHHHHcC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010320          275 WMWGKVEEIYQMMKAG----P----------VMPDT--NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI  338 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~----g----------~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  338 (513)
                      ...+-..+++......    |          -.|+.  .++..+...|...|++++|+++++..++.. +..+..|..-.
T Consensus       157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Ka  235 (517)
T PF12569_consen  157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKA  235 (517)
T ss_pred             hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            5555555666555421    1          12343  455777888899999999999999999873 33477888888


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHH----H--HHHHHH
Q 010320          339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVR----I--MRCIVS  411 (513)
Q Consensus       339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~----~--~~~li~  411 (513)
                      ..|-+.|++.+|.+..+..+.+...+-  ++|+-.+..+.++|++++|.+++....+.+..+. +..    +  ......
T Consensus       236 rilKh~G~~~~Aa~~~~~Ar~LD~~DR--yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~  313 (517)
T PF12569_consen  236 RILKHAGDLKEAAEAMDEARELDLADR--YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE  313 (517)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence            999999999988888887777765443  2355688889999999999999987776653221 111    1  234567


Q ss_pred             HHHhcCcHHHHHHHHHHHH
Q 010320          412 SYFRCNAVDKLANFVKRAE  430 (513)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~  430 (513)
                      +|.+.|++..|++.|..+.
T Consensus       314 a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  314 AYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             HHHHHhhHHHHHHHHHHHH
Confidence            8888999988887766554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.08  E-value=1.7e-07  Score=78.28  Aligned_cols=200  Identities=11%  Similarity=0.046  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 010320          297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV  376 (513)
Q Consensus       297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  376 (513)
                      .+..-|.-.|...|+...|.+-+++..+.+ +.+..+|..+...|.+.|+.+.|.+.++....+.+++-... |+ ....
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVL-NN-YG~F  112 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL-NN-YGAF  112 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchh-hh-hhHH
Confidence            355667777888888888888888888874 34666788888888888988888888887777766554433 32 6777


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH
Q 010320          377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE  456 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  456 (513)
                      +|..|++++|...|++.+....-+....+|..+.-+..+.|+.+.|.+.|++..+.... .....-.+.....+.|++-.
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence            89999999999999999988776666778888888888999999999999998876543 33455677788889999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       457 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      |..+++.....+. ++.......|+.-...|+.+.+-++=..+.+
T Consensus       192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            9999999988774 8999999999999999999988887665544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.08  E-value=2.4e-06  Score=81.83  Aligned_cols=193  Identities=11%  Similarity=0.002  Sum_probs=125.5

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH--
Q 010320          126 LMKQLGSRPRLALEVLNWRRRQAGYGTPMTK-EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY--  202 (513)
Q Consensus       126 ~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~--  202 (513)
                      .+....++++.+...+....+....  .++. .........+...|++++|.+++++..+..+.+...+.. ...+..  
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~   90 (355)
T cd05804          14 LLLLLGGERPAAAAKAAAAAQALAA--RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLG   90 (355)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhc
Confidence            3333344555555555444433221  1222 222223344567899999999999988876556656553 222222  


Q ss_pred             --cCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010320          203 --NGLSDKCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK  279 (513)
Q Consensus       203 --~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  279 (513)
                        .+..+.+.+.+....   ...|+. .....+...+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus        91 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~e  166 (355)
T cd05804          91 DFSGMRDHVARVLPLWA---PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKE  166 (355)
T ss_pred             ccccCchhHHHHHhccC---cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHH
Confidence              455555555555421   233443 4455667788899999999999999988653 356777888889999999999


Q ss_pred             HHHHHHHHHcCCC-CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320          280 VEEIYQMMKAGPV-MPD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       280 a~~~~~~m~~~g~-~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      |...+++.....- .|+  ...|..+...+...|++++|..+++.....
T Consensus       167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            9999998776321 233  235667888899999999999999987643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.07  E-value=2.9e-07  Score=84.96  Aligned_cols=155  Identities=9%  Similarity=-0.072  Sum_probs=104.2

Q ss_pred             HhcccCCHHHHHHHHHHHHhccC--C--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010320          165 FAGRINNVDLAADLFAEAANKHL--K--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL  240 (513)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g  240 (513)
                      .....+..+.++.-+.++.....  +  ....|..+...|...|+.++|...|++..+.  -+.+...|+.+...+...|
T Consensus        35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g  112 (296)
T PRK11189         35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAG  112 (296)
T ss_pred             ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCC
Confidence            34455677777777777775433  1  2456777777788888888888888887753  2345677888888888888


Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010320          241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      ++++|...|++..+.... +..+|..+..++...|++++|++.|+...+.  .|+..........+...++.++|...|+
T Consensus       113 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~  189 (296)
T PRK11189        113 NFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLK  189 (296)
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence            888888888888765332 4566777777777788888888888887763  3443222222223345567777877776


Q ss_pred             HHHh
Q 010320          321 LVKH  324 (513)
Q Consensus       321 ~~~~  324 (513)
                      ....
T Consensus       190 ~~~~  193 (296)
T PRK11189        190 QRYE  193 (296)
T ss_pred             HHHh
Confidence            5443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.07  E-value=5.5e-06  Score=79.47  Aligned_cols=376  Identities=12%  Similarity=0.054  Sum_probs=241.5

Q ss_pred             cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010320          117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL  196 (513)
Q Consensus       117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  196 (513)
                      +++....-.+.-.+-++.++|........+.    -.-+.+.|..+.-.+-...++++|.+.|......+..|...|.-+
T Consensus        40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~----d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl  115 (700)
T KOG1156|consen   40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRN----DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL  115 (700)
T ss_pred             cchhHHhccchhhcccchHHHHHHHHHHhcc----CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            5566666555555667777787776654432    334777888888888888999999999999988877788888888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHH------
Q 010320          197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVFTYNYLIA------  269 (513)
Q Consensus       197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~------  269 (513)
                      --.-++.|+++...+.-.++.+.  .+-....|..+..++.-.|+...|..++++..+.. -.|+...|.....      
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~  193 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ  193 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence            77778888888888888888763  23445678888888888999999999999988654 2456655554433      


Q ss_pred             HHHHccCHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh-cCCh
Q 010320          270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTY-LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSVT  347 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~  347 (513)
                      ...+.|..++|.+.+..-...  ..|...| ..-...+.+.+++++|..++..++... +.+...|-.+..++++ .+..
T Consensus       194 i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~  270 (700)
T KOG1156|consen  194 ILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDML  270 (700)
T ss_pred             HHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhH
Confidence            344577777777766554432  2233333 334556778899999999999888863 3344555555556642 2222


Q ss_pred             hHHHHHHHHHHhCCCCCcccc------------------------------hHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 010320          348 DRIKKIEALMRLIPEKEYRPW------------------------------LNVLLIRVYAKEDCLEEMEKSINDAFE--  395 (513)
Q Consensus       348 ~~a~~~~~~~~~~~~~~~~~~------------------------------~~~~li~~~~~~~~~~~a~~~~~~~~~--  395 (513)
                      +....++..+.+......-+.                              +...+...|-.-...+-.+++.-.+..  
T Consensus       271 ~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L  350 (700)
T KOG1156|consen  271 EALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSL  350 (700)
T ss_pred             HHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhc
Confidence            222244444443322211110                              011122222211111111111111111  


Q ss_pred             --cC---------CCCchHH--HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHH
Q 010320          396 --HK---------TSVTTVR--IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVL  461 (513)
Q Consensus       396 --~~---------~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~  461 (513)
                        .+         ..+|...  ++-.++..+-+.|+++.|..+++...++  .|+ ++.|..-.+.+...|++++|..++
T Consensus       351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l  428 (700)
T KOG1156|consen  351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWL  428 (700)
T ss_pred             ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence              00         1233333  3445677888899999999999988754  344 344555567888899999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010320          462 KEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       462 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  504 (513)
                      ++..+.+ .+|...=.--..-..++.+.++|.++....-+.|.
T Consensus       429 ~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  429 DEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            9999887 45654433555666788899999998888877775

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=4e-07  Score=85.66  Aligned_cols=282  Identities=11%  Similarity=-0.013  Sum_probs=178.4

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010320          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT  231 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~  231 (513)
                      ..-+......-.+-+-..+++.+..++++...+..+.+...+-.=|..+...|+..+-..+=.+|...  .+-...+|-+
T Consensus       240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~a  317 (611)
T KOG1173|consen  240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFA  317 (611)
T ss_pred             hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhh
Confidence            33455566666666777788888888888877776666666666677777778777777777777754  3445577888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHh
Q 010320          232 LISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKA--GPVMPDTNTYLLLLRGYAH  308 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~  308 (513)
                      +.-.|-..|...+|.+.|.+....  .|. ...|-.....|+-.|..|+|+..|...-+  .|.   ..-+--+.--|.+
T Consensus       318 Vg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~---hlP~LYlgmey~~  392 (611)
T KOG1173|consen  318 VGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC---HLPSLYLGMEYMR  392 (611)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC---cchHHHHHHHHHH
Confidence            877777778888888888776543  222 35677777777778888888877766544  121   1112223334666


Q ss_pred             cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCcccch--HHHHHHHHHhcCC
Q 010320          309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR----LIPEKEYRPWL--NVLLIRVYAKEDC  382 (513)
Q Consensus       309 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~--~~~li~~~~~~~~  382 (513)
                      .++++.|.+.|.+.... .+.|..+.+-+.-.....+.+.+|...++...    ...... ..|.  ..-|..+|.+.+.
T Consensus       393 t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-~~w~p~~~NLGH~~Rkl~~  470 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-IFWEPTLNNLGHAYRKLNK  470 (611)
T ss_pred             hccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-cchhHHHHhHHHHHHHHhh
Confidence            77888888888777664 34466666666555555565665555443222    111111 1221  2236677777777


Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010320          383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV  446 (513)
Q Consensus       383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  446 (513)
                      +++|+..+++.+.  ..+.+..++.++.-.|...|+++.|.+.|.+..  .+.|+..+-..++.
T Consensus       471 ~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  471 YEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK  530 (611)
T ss_pred             HHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence            7777777777666  344556667777777777777777777777665  34555544444444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.06  E-value=2.5e-07  Score=89.26  Aligned_cols=134  Identities=16%  Similarity=0.143  Sum_probs=77.9

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHh----CC-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKE----AN-ISPSIVT-YNTLISVFGRLLLVDHMEAAFQEIKDS-----NL-  257 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~g-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-  257 (513)
                      ..+...+...|...|++++|..+++...+.    .| ..|.+.+ .+.+...|...+++.+|..+|+++...     |- 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            345555777777777777777777665432    12 1233332 233566677777777777777777631     21 


Q ss_pred             CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320          258 SP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVM-PD-TNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       258 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      .| -..+++.|-..|.+.|++++|...++...+     .|.. |. ..-++.+...|+..+++++|..++....
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al  352 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL  352 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            11 134556666677777777777666655432     1211 22 2344555666777777777777776543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.05  E-value=4e-06  Score=82.00  Aligned_cols=355  Identities=12%  Similarity=0.069  Sum_probs=231.1

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHH
Q 010320          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYN  230 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~  230 (513)
                      ++-|...|..+.-++...|+++.+.+.|++....-+...+.|+.+-..|...|.-..|..+.+.-... .-.|+ ...+-
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~-~~~ps~~s~~L  397 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK-SEQPSDISVLL  397 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc-ccCCCcchHHH
Confidence            66799999999999999999999999999987655557889999999999999999999988876543 11243 33332


Q ss_pred             HHHHHHHh-cCCh--------------------------------------------------hHHHHHHHHHHHCCCCC
Q 010320          231 TLISVFGR-LLLV--------------------------------------------------DHMEAAFQEIKDSNLSP  259 (513)
Q Consensus       231 ~li~~~~~-~g~~--------------------------------------------------~~A~~~~~~m~~~g~~p  259 (513)
                      ..-..|.+ .+.+                                                  .++.+.+++..+.+.. 
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-  476 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-  476 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            22222221 1222                                                  3444555555543321 


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cC-----------
Q 010320          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VD-----------  327 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~-----------  327 (513)
                      |..+.-.+---|+..++++.|.+..++..+-+-.-+...|..|.-.+...+++.+|+.+.+...+. |.           
T Consensus       477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i  556 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI  556 (799)
T ss_pred             CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence            222222233345566778888888888887644557788888888888888888888888775542 21           


Q ss_pred             -------CCcHHHHHHHHHHHHh---------cCC--------------hhHHH----HHHHHH----HhC------CCC
Q 010320          328 -------GKEFPLIRAMICAYSK---------CSV--------------TDRIK----KIEALM----RLI------PEK  363 (513)
Q Consensus       328 -------~~~~~~~~~li~~~~~---------~g~--------------~~~a~----~~~~~~----~~~------~~~  363 (513)
                             .--..|+..++..+-.         .|.              ..++.    .+....    +.+      +..
T Consensus       557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s  636 (799)
T KOG4162|consen  557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS  636 (799)
T ss_pred             hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence                   0011122222222220         000              00000    000000    000      100


Q ss_pred             Ccc-----cc-----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010320          364 EYR-----PW-----LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG  433 (513)
Q Consensus       364 ~~~-----~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  433 (513)
                      ...     +|     .+......+.+.++.++|...+.+...  ..+.....|......+...|+.++|.+.|.......
T Consensus       637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld  714 (799)
T KOG4162|consen  637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD  714 (799)
T ss_pred             cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence            011     11     122355667777888888877766655  445556667777777888899999999999877544


Q ss_pred             CcccHhhHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCC
Q 010320          434 WRLCRSLYHSKMVMYASQRRVEEMES--VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF  511 (513)
Q Consensus       434 ~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  511 (513)
                      .. ++....++...+.+.|+..-|..  ++.++.+.| +-+...|-.+...+.+.|+.+.|.+.|+...+..-.-++..|
T Consensus       715 P~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pF  792 (799)
T KOG4162|consen  715 PD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPF  792 (799)
T ss_pred             CC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccc
Confidence            22 35567888899999998888888  999999988 678899999999999999999999999988776555555544


Q ss_pred             C
Q 010320          512 P  512 (513)
Q Consensus       512 ~  512 (513)
                      .
T Consensus       793 s  793 (799)
T KOG4162|consen  793 S  793 (799)
T ss_pred             c
Confidence            3

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=4.8e-08  Score=85.46  Aligned_cols=226  Identities=12%  Similarity=0.023  Sum_probs=147.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 010320          194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY-NYLIAGYM  272 (513)
Q Consensus       194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~  272 (513)
                      +.+.++|.+.|.+.+|.+.|+.-.++   .|-+.||-.|-++|.+..+.+.|+.+|.+-.+.  .|-.+|| .-+...+-
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence            56778888889999998888887765   677888888888999999999999888887764  3544554 34556667


Q ss_pred             HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHH
Q 010320          273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK  352 (513)
Q Consensus       273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  352 (513)
                      ..++.++|.++|+...+.. ..++.....+...|.-.++++.|+.++.++.+.|.. +...|+.+.-+|.-.+++|.+..
T Consensus       302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence            7788888888888877643 235666677777788888888899999888888764 45556666666666666665544


Q ss_pred             HHHHHH-hCCCCC--cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010320          353 IEALMR-LIPEKE--YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA  429 (513)
Q Consensus       353 ~~~~~~-~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  429 (513)
                      .++... .+..++  ...| |+ +.......|++..|.+.|+-.+..  .+.....+|.|.-.-.+.|++++|..++...
T Consensus       380 sf~RAlstat~~~~aaDvW-YN-lg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVW-YN-LGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             HHHHHHhhccCcchhhhhh-hc-cceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            433222 222222  2223 21 444444556666666666554442  2333444555555555666666666666655


Q ss_pred             H
Q 010320          430 E  430 (513)
Q Consensus       430 ~  430 (513)
                      .
T Consensus       456 ~  456 (478)
T KOG1129|consen  456 K  456 (478)
T ss_pred             h
Confidence            4

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.02  E-value=6.3e-06  Score=79.11  Aligned_cols=353  Identities=10%  Similarity=0.081  Sum_probs=228.9

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      -+..++|...|.......    +-+...|.-+--.-++.|+++...+...+..+..+.....|..+..++.-.|+...|.
T Consensus        88 dK~Y~eaiKcy~nAl~~~----~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~  163 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIE----KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL  163 (700)
T ss_pred             hhhHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            457788888888776643    2366677776666678889988888888888766667888999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHccCHHHHHHH
Q 010320          211 SLFRDLKKEANISPSIVTYNTLI------SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY-NYLIAGYMTAWMWGKVEEI  283 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~  283 (513)
                      ++.++..+...-.|+...|....      ....+.|.++.|.+.+..-... + .|...+ .+-...+.+.+++++|..+
T Consensus       164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~  241 (700)
T KOG1156|consen  164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKV  241 (700)
T ss_pred             HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence            99999987533347766664333      2345667777777776655432 1 233333 3344567778888888888


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHHHH----------------------------------HhccC
Q 010320          284 YQMMKAGPVMPDTNTYLLLLRGYA-HSGNLPRME-KIYELV----------------------------------KHHVD  327 (513)
Q Consensus       284 ~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~-~~~~~~----------------------------------~~~~~  327 (513)
                      |..++..  .||..-|...+..+. +..+.-++. .+|...                                  .+.|+
T Consensus       242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~  319 (700)
T KOG1156|consen  242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV  319 (700)
T ss_pred             HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence            8888875  377666655544443 222222222 333332                                  33333


Q ss_pred             CCcHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCC--------------CCcccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010320          328 GKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPE--------------KEYRPWLNVLLIRVYAKEDCLEEMEKSIND  392 (513)
Q Consensus       328 ~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~--------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  392 (513)
                      ++   ++..+...|-.-...+-.++. ......+..              +....|++-.++..+-..|+++.|+.+++.
T Consensus       320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~  396 (700)
T KOG1156|consen  320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL  396 (700)
T ss_pred             Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            22   222333333221111111111 111112211              122235455688889999999999999999


Q ss_pred             HHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010320          393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS  472 (513)
Q Consensus       393 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  472 (513)
                      .+.  ..|+-+..|..=.+.+.+.|+++.|..++++..+.. .+|...-.--..-..+.++.++|.++....-+.|.  +
T Consensus       397 AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~  471 (700)
T KOG1156|consen  397 AID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--G  471 (700)
T ss_pred             Hhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--c
Confidence            887  566667777777788999999999999999998766 34655544666677789999999999998887774  2


Q ss_pred             HH--------HHHHH--HHHHHhcCCHhHHHHHHHHH
Q 010320          473 KK--------TFWIM--YYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       473 ~~--------~~~~l--i~~~~~~g~~~~A~~~~~~m  499 (513)
                      ..        .|-.+  ..+|.++|++..|++=|..+
T Consensus       472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            21        22222  25678888888887766554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.99  E-value=8.2e-06  Score=78.10  Aligned_cols=164  Identities=12%  Similarity=-0.035  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      ...|..+...+...|+.+.+.+.+....+....+   ..........+...|++++|.+++++....  .+.|...+.. 
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-   82 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-   82 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence            3445555555556666666666666655443322   122222334455667777777777776653  2333334332 


Q ss_pred             HHHHHh----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010320          233 ISVFGR----LLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA  307 (513)
Q Consensus       233 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~  307 (513)
                      ...+..    .+..+.+.+.++.  ..+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~  159 (355)
T cd05804          83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE  159 (355)
T ss_pred             hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence            222222    3344444444443  1112222 2333445556667777777777777776643 223556666666777


Q ss_pred             hcCChHHHHHHHHHHHhc
Q 010320          308 HSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       308 ~~g~~~~a~~~~~~~~~~  325 (513)
                      ..|++++|...+++..+.
T Consensus       160 ~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         160 MQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             HcCCHHHHHHHHHhhhhc
Confidence            777777777777766553

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=2.1e-07  Score=85.95  Aligned_cols=220  Identities=12%  Similarity=0.087  Sum_probs=161.5

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH
Q 010320          200 YMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG  278 (513)
Q Consensus       200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  278 (513)
                      +.-.|+.-.|.+-|+.....   .|... .|--+...|....+-++....|++....+.. |..+|..-...+.-.++++
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l---~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e  411 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKL---DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE  411 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhc---CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence            45578888999999988863   33333 3778888899999999999999998876543 6677777777777788899


Q ss_pred             HHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320          279 KVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       279 ~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      +|..=|++.+.  +.| +...|.-+.-+..+.+++++++..|++.++. ++....+|+-....+...+++++|.+.++..
T Consensus       412 ~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a  488 (606)
T KOG0547|consen  412 EAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA  488 (606)
T ss_pred             HHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence            99999999887  445 4777888888888899999999999999887 5667788999999999999999999888888


Q ss_pred             HhCCCC------CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010320          358 RLIPEK------EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA  429 (513)
Q Consensus       358 ~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  429 (513)
                      .++.+.      +..+.+.-.++..- -.+++..|++++.+.++  ..|.....|..|...-.+.|+.++|+++|++.
T Consensus       489 i~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  489 IELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             HhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            877766      33333222111111 23667777777776666  33334445666666666777777777777654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.3e-05  Score=72.90  Aligned_cols=303  Identities=10%  Similarity=0.022  Sum_probs=206.0

Q ss_pred             CCCCHHHHHHHHHHhccc--CCHHHHHHHHHHHHhc-cCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010320          152 TPMTKEEYTKGIKFAGRI--NNVDLAADLFAEAANK-HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV  227 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~  227 (513)
                      +++.......-+.+++..  ++-..|...+-..... -++ |+.....+...+...|+.++|...|++...   +.|+..
T Consensus       190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i  266 (564)
T KOG1174|consen  190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNV  266 (564)
T ss_pred             cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhh
Confidence            444444444455555443  3333444443333322 234 899999999999999999999999998874   345443


Q ss_pred             -HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010320          228 -TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY  306 (513)
Q Consensus       228 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  306 (513)
                       ........+.+.|++++...+...+.... +-+...|-.-.......+++..|+.+-++-++.. .-+...|..-...+
T Consensus       267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL  344 (564)
T KOG1174|consen  267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLL  344 (564)
T ss_pred             hhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHH
Confidence             23333344567888888888888776531 1234445555555667788999999988887733 12455666666778


Q ss_pred             HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH-HHHHhCCCCCcccchHHHHHH--HH-HhcCC
Q 010320          307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE-ALMRLIPEKEYRPWLNVLLIR--VY-AKEDC  382 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~li~--~~-~~~~~  382 (513)
                      ...|++++|.-.|+..... -+.+...|.-|+.+|...|.+.+|...- ..++.++. +..+.   .++.  .+ -...-
T Consensus       345 ~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-sA~~L---tL~g~~V~~~dp~~  419 (564)
T KOG1174|consen  345 IALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-SARSL---TLFGTLVLFPDPRM  419 (564)
T ss_pred             HhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-chhhh---hhhcceeeccCchh
Confidence            8899999999999887775 2457889999999999999887765442 23333332 22222   1221  11 12234


Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010320          383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                      -++|.+++++.+..  .|.-....+.+...|...|..+++..++++...  ..||....+.|.+.+...+.+++|+..|.
T Consensus       420 rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~  495 (564)
T KOG1174|consen  420 REKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYY  495 (564)
T ss_pred             HHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            57888888887764  344455577788888999999999999998764  34788888999999999999999999998


Q ss_pred             HHHhCC
Q 010320          463 EMENYK  468 (513)
Q Consensus       463 ~m~~~~  468 (513)
                      ...+.+
T Consensus       496 ~ALr~d  501 (564)
T KOG1174|consen  496 KALRQD  501 (564)
T ss_pred             HHHhcC
Confidence            888765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=9.1e-06  Score=72.33  Aligned_cols=347  Identities=12%  Similarity=0.059  Sum_probs=173.9

Q ss_pred             HHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010320          122 AFVELMKQL---GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       122 ~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      .....+..|   -++.++|+..+..+.+..    .++...+..|.-.+.-.|.+.+|..+-....+    ++-.-..|+.
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~----~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfh  129 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKD----DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFH  129 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccC----CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHH
Confidence            344444444   467888888888776532    34566666666666667888888777665443    4444445555


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHccCH
Q 010320          199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA-GYMTAWMW  277 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~  277 (513)
                      .-.+.++-++-..+-+.+..      ...---+|....-....+++|++++.+....+  |+....|.-+. +|.+..-+
T Consensus       130 lahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYy  201 (557)
T KOG3785|consen  130 LAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYY  201 (557)
T ss_pred             HHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchh
Confidence            55666776666655555542      11222344444445557899999999998753  56666666554 56677777


Q ss_pred             HHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHh--cCChHHH--HHH----------HHHHHhcc----------------
Q 010320          278 GKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAH--SGNLPRM--EKI----------YELVKHHV----------------  326 (513)
Q Consensus       278 ~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~--~g~~~~a--~~~----------~~~~~~~~----------------  326 (513)
                      +-+.++++--.+.  -|| ....+.......+  .|+..+.  .++          .+.+.+++                
T Consensus       202 dvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~  279 (557)
T KOG3785|consen  202 DVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS  279 (557)
T ss_pred             hhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH
Confidence            8788887776653  345 3444443333322  2222111  111          11111111                


Q ss_pred             ---CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHH--HHhcC-------CHHHHHHHHHHHH
Q 010320          327 ---DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV--YAKED-------CLEEMEKSINDAF  394 (513)
Q Consensus       327 ---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~-------~~~~a~~~~~~~~  394 (513)
                         ..|...  -.|+--|.+.+++.   ++..++++..+.....+    ++.+  +...|       +..-|.+.|+-.-
T Consensus       280 L~~~IPEAR--lNL~iYyL~q~dVq---eA~~L~Kdl~PttP~Ey----ilKgvv~aalGQe~gSreHlKiAqqffqlVG  350 (557)
T KOG3785|consen  280 LMKHIPEAR--LNLIIYYLNQNDVQ---EAISLCKDLDPTTPYEY----ILKGVVFAALGQETGSREHLKIAQQFFQLVG  350 (557)
T ss_pred             HHhhChHhh--hhheeeecccccHH---HHHHHHhhcCCCChHHH----HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence               011111  12333455566444   44555555443332222    2221  11112       3344444443332


Q ss_pred             hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010320          395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK  474 (513)
Q Consensus       395 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  474 (513)
                      +.+...+++.--.++...+.-..++|+++.+++.++..-..-|...|| +..+++..|.+.+|+++|-.+....++ |..
T Consensus       351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~  428 (557)
T KOG3785|consen  351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKI  428 (557)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhH
Confidence            222222211112334444455555666666555555444433443333 455566666666666666555544433 333


Q ss_pred             HHH-HHHHHHHhcCCHhHHHHHHH
Q 010320          475 TFW-IMYYAYATCGQRRKVNQVLG  497 (513)
Q Consensus       475 ~~~-~li~~~~~~g~~~~A~~~~~  497 (513)
                      +|. .|.++|.++|+++.|++++-
T Consensus       429 ~Y~s~LArCyi~nkkP~lAW~~~l  452 (557)
T KOG3785|consen  429 LYKSMLARCYIRNKKPQLAWDMML  452 (557)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHH
Confidence            333 34455666666666555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.95  E-value=8.7e-07  Score=81.80  Aligned_cols=182  Identities=12%  Similarity=-0.050  Sum_probs=125.6

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010320          133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL  212 (513)
Q Consensus       133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  212 (513)
                      ..+.++.-+..+.........-....|..+...|.+.|+.++|...|++..+..+.+...|+.+...+...|++++|.+.
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~  120 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA  120 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34445555555544322111122456777888889999999999999999998777899999999999999999999999


Q ss_pred             HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010320          213 FRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       213 ~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      |++..+.   .| +..+|..+..++...|++++|.+.|++..+..  |+..........+...++.++|.+.|++.....
T Consensus       121 ~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        121 FDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            9999863   45 46788888899999999999999999998754  443322222333445678999999997755422


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010320          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                       .|+...+   .......|+.+.+ +.++.+.+
T Consensus       196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~  223 (296)
T PRK11189        196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKA  223 (296)
T ss_pred             -CccccHH---HHHHHHccCCCHH-HHHHHHHh
Confidence             3332222   2223345666554 35555543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.93  E-value=1.5e-06  Score=72.77  Aligned_cols=191  Identities=10%  Similarity=-0.066  Sum_probs=153.2

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      +...|.-.|.+.|+...|.+-+++..+..+.+..+|..+...|-+.|+.+.|.+-|++..+.  -+-+-.+.|...-.+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence            44556777889999999999999999988778889999999999999999999999998863  2334577888888889


Q ss_pred             hcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 010320          238 RLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a  315 (513)
                      ..|.+++|...|++....-.-+ -..+|..+.-+..+.|+.+.|.+.|++-.+..  |+ ..+...+.+...+.|++-.|
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHH
Confidence            9999999999999988752211 24678888888889999999999999988743  43 56778888889999999999


Q ss_pred             HHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 010320          316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI  353 (513)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  353 (513)
                      ..+++.....+. ++..+.-..|..--..|+.+.+.+.
T Consensus       193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y  229 (250)
T COG3063         193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY  229 (250)
T ss_pred             HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence            999998888766 7777666666666677766655443

>PF12854 PPR_1: PPR repeat

Probab=98.91  E-value=2.1e-09  Score=62.20  Aligned_cols=32  Identities=38%  Similarity=0.528  Sum_probs=14.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320          221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEI  252 (513)
Q Consensus       221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  252 (513)
                      |+.||..|||+||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444444444444444444444444444444

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=5.6e-06  Score=75.16  Aligned_cols=292  Identities=8%  Similarity=-0.046  Sum_probs=200.6

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHccCH
Q 010320          199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF-TYNYLIAGYMTAWMW  277 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~  277 (513)
                      +.+..++...|...+-.+....-++-|+.....+.+.+...|+.++|+..|++..-.+  |+.. ......-.+.+.|++
T Consensus       205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~  282 (564)
T KOG1174|consen  205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGC  282 (564)
T ss_pred             HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCH
Confidence            3344566666666555444433466778888999999999999999999999987632  3322 122222334578899


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320          278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       278 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      +....+...+.... .-....|..-.......++++.|+.+-++.++.. +.+...|-.-...+...|+.+.|.-+++..
T Consensus       283 e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~A  360 (564)
T KOG1174|consen  283 EQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTA  360 (564)
T ss_pred             hhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHH
Confidence            99888888876532 1233344444555567788999999998888753 234555555555677788888777777766


Q ss_pred             HhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH-HHHH-hcCcHHHHHHHHHHHHhcCCc
Q 010320          358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV-SSYF-RCNAVDKLANFVKRAESAGWR  435 (513)
Q Consensus       358 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~  435 (513)
                      ..+.+.....  |.-++.+|...|++.+|.-.-+...+.  .+.+..++..+. ..|. ....-++|.++++.....  .
T Consensus       361 q~Lap~rL~~--Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~  434 (564)
T KOG1174|consen  361 QMLAPYRLEI--YRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--N  434 (564)
T ss_pred             HhcchhhHHH--HHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--C
Confidence            6555544444  446999999999999998776665542  222344444331 2222 233467899999876543  3


Q ss_pred             cc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          436 LC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       436 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      |+ ....+.+...+...|..++++.+++....  ..||....+.|.+.+...+.+++|++.|....+.
T Consensus       435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            43 34466777888899999999999998875  3689999999999999999999999988776544

>PF12854 PPR_1: PPR repeat

Probab=98.88  E-value=2.5e-09  Score=61.89  Aligned_cols=34  Identities=38%  Similarity=0.542  Sum_probs=27.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010320          255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       255 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  288 (513)
                      +|+.||..|||+||++||+.|++++|.++|++|.
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            0567888888888888888888888888888874

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.80  E-value=0.00015  Score=68.47  Aligned_cols=376  Identities=9%  Similarity=0.057  Sum_probs=225.1

Q ss_pred             cCchhHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH
Q 010320          117 HSNGYAFVELMKQLGS-RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA  195 (513)
Q Consensus       117 ~p~~~~~~~~l~~~~~-~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  195 (513)
                      .-|..+|..+++.... ..+++.+.++.+...    ++.+...|..-|+.-.+.++++...++|.+-...-+ +...|..
T Consensus        17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~----FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~l   91 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNV----FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKL   91 (656)
T ss_pred             CccHHHHHHHHHHHccCCHHHHHHHHHHHhcc----CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHH
Confidence            4477899999999965 556788888877553    566888999999999999999999999998776422 6778887


Q ss_pred             HHHHHHH-cCChH----HHHHHHHHHHHhCCCCCCH-HHHHHHHHHH---------HhcCChhHHHHHHHHHHHCCCCC-
Q 010320          196 LLGAYMY-NGLSD----KCQSLFRDLKKEANISPSI-VTYNTLISVF---------GRLLLVDHMEAAFQEIKDSNLSP-  259 (513)
Q Consensus       196 li~~~~~-~g~~~----~A~~~~~~m~~~~g~~p~~-~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~g~~p-  259 (513)
                      -|.---+ .|+..    .....|+-...+.|+.+-. ..|+..+..+         ....+++...++++++...-+.- 
T Consensus        92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl  171 (656)
T KOG1914|consen   92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL  171 (656)
T ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence            7764333 23332    3334455544444544332 2344444332         33345667778888887542211 


Q ss_pred             -----CHHHHHHHHHHHH-------HccCHHHHHHHHHHHHc--CCCCCCHHH---------------HHHHH-------
Q 010320          260 -----NVFTYNYLIAGYM-------TAWMWGKVEEIYQMMKA--GPVMPDTNT---------------YLLLL-------  303 (513)
Q Consensus       260 -----~~~~~~~li~~~~-------~~g~~~~a~~~~~~m~~--~g~~p~~~t---------------~~~ll-------  303 (513)
                           |-..|..=|+-..       +...+..|.+++++...  +|+..+..+               |-.+|       
T Consensus       172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp  251 (656)
T KOG1914|consen  172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP  251 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence                 1122221121111       12234455555555432  232111100               11111       


Q ss_pred             ------------------------------------------HHHHhcCC-------hHHHHHHHHHHHhccCCCcHHHH
Q 010320          304 ------------------------------------------RGYAHSGN-------LPRMEKIYELVKHHVDGKEFPLI  334 (513)
Q Consensus       304 ------------------------------------------~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~  334 (513)
                                                                +.+...|+       .+++.++++..++.-..-+..+|
T Consensus       252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly  331 (656)
T KOG1914|consen  252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY  331 (656)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                      11112222       23334444443332112222233


Q ss_pred             HHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010320          335 RAMICAYSKCS---VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS  411 (513)
Q Consensus       335 ~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  411 (513)
                      ..+.+---..-   ..+...+..+.+......+..-. +-.++..-.+..-++.|..+|.+..+.+..+..+.++++++.
T Consensus       332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv-~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE  410 (656)
T KOG1914|consen  332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLV-YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME  410 (656)
T ss_pred             HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCcee-hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence            32222111111   12222233333333333332222 335777777888899999999999998877777888889988


Q ss_pred             HHHhcCcHHHHHHHHHH-HHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC
Q 010320          412 SYFRCNAVDKLANFVKR-AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQ  488 (513)
Q Consensus       412 ~~~~~~~~~~a~~~~~~-~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~  488 (513)
                      -|| .++.+-|.++|+. ++..|-  ++......++.+...++-..|..+|++....++.|+  ...|..++.--..-|+
T Consensus       411 y~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd  487 (656)
T KOG1914|consen  411 YYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD  487 (656)
T ss_pred             HHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence            665 5788899999994 455442  344457788888899999999999999998866655  4789999999999999


Q ss_pred             HhHHHHHHHHHHH
Q 010320          489 RRKVNQVLGLMCK  501 (513)
Q Consensus       489 ~~~A~~~~~~m~~  501 (513)
                      ...+.++-+++..
T Consensus       488 L~si~~lekR~~~  500 (656)
T KOG1914|consen  488 LNSILKLEKRRFT  500 (656)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887754

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.79  E-value=2.2e-07  Score=84.53  Aligned_cols=250  Identities=8%  Similarity=0.034  Sum_probs=112.3

Q ss_pred             cccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010320          167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM  245 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A  245 (513)
                      .-.|++..++.-.+ ......+ .......+.+++...|+.+.+   ..++...  -.|.......+...+...++-+.+
T Consensus        12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~--~~~~l~av~~la~y~~~~~~~e~~   85 (290)
T PF04733_consen   12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKS--SSPELQAVRLLAEYLSSPSDKESA   85 (290)
T ss_dssp             HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TT--SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred             HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccC--CChhHHHHHHHHHHHhCccchHHH
Confidence            34566666664444 2222111 334445555666666665533   2334322  245555554444444333333444


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010320          246 EAAFQEIKDSNLSPNVFTYNYL-IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       246 ~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      ..-+++....+...+..++..+ ...+...|++++|++++..-      -+.......+..|.+.++++.|.+.++.|.+
T Consensus        86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~  159 (290)
T PF04733_consen   86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ  159 (290)
T ss_dssp             HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4444333322222122222222 23344456666666655432      2445555566666666666666666666665


Q ss_pred             ccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010320          325 HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR  404 (513)
Q Consensus       325 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  404 (513)
                      .+  .|.. ...+..++                                +..+.-.+.+.+|..+|+++..+  .++++.
T Consensus       160 ~~--eD~~-l~qLa~aw--------------------------------v~l~~g~e~~~~A~y~f~El~~~--~~~t~~  202 (290)
T PF04733_consen  160 ID--EDSI-LTQLAEAW--------------------------------VNLATGGEKYQDAFYIFEELSDK--FGSTPK  202 (290)
T ss_dssp             CS--CCHH-HHHHHHHH--------------------------------HHHHHTTTCCCHHHHHHHHHHCC--S--SHH
T ss_pred             cC--CcHH-HHHHHHHH--------------------------------HHHHhCchhHHHHHHHHHHHHhc--cCCCHH
Confidence            32  2222 12222222                                22222223455666666665443  122344


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 010320          405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV-EEMESVLKEMEN  466 (513)
Q Consensus       405 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~  466 (513)
                      +++.+..++...|++++|.+++.+....... +..+...+|.+....|+. +.+.+++.++..
T Consensus       203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            5566666666666666666666655433322 334444444444445554 445555555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.78  E-value=5.6e-07  Score=81.86  Aligned_cols=129  Identities=12%  Similarity=0.082  Sum_probs=93.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  451 (513)
                      +.+..|.+.++++.|.+.++.|.+-.....-..+..+.+..+...+.+.+|..+|+++.+. ..++..+.+.+..++...
T Consensus       136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~  214 (290)
T PF04733_consen  136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQL  214 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHh
Confidence            5788889999999999999998875332222222233333333344789999999998754 567888899999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHC
Q 010320          452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR-RKVNQVLGLMCKN  502 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~  502 (513)
                      |++++|.+++++..+.+ +-+..+...++-+....|+. +.+.+++.++...
T Consensus       215 ~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  215 GHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             T-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             CCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            99999999999988776 45777888888888888888 6677788877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.77  E-value=6.1e-05  Score=81.80  Aligned_cols=338  Identities=9%  Similarity=-0.056  Sum_probs=208.1

Q ss_pred             hcccCCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----CCCH--HHHHHHHHHHH
Q 010320          166 AGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-----SPSI--VTYNTLISVFG  237 (513)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-----~p~~--~~~~~li~~~~  237 (513)
                      +...|+++.+..+++.+..... .+..........+...|++++|...+........-     .+..  .....+...+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            3445677777677666533211 13333344455566789999999999887642111     1111  12223334566


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CCCHHHHHHHHHHHHh
Q 010320          238 RLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MPDTNTYLLLLRGYAH  308 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~  308 (513)
                      ..|++++|...+++..+.-...+.    ...+.+...+...|++++|...+++....    |- .....++..+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            889999999999988763111222    34566666778899999999999887642    21 1123455666778889


Q ss_pred             cCChHHHHHHHHHHHh----ccCC--C-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---cccchHHHHHHHHH
Q 010320          309 SGNLPRMEKIYELVKH----HVDG--K-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE---YRPWLNVLLIRVYA  378 (513)
Q Consensus       309 ~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~  378 (513)
                      .|++++|...+++..+    .+..  + ....+..+...+...|+++.|.........+....   ........+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            9999999999887654    2221  1 22334455666777899998876655443332211   11111223556777


Q ss_pred             hcCCHHHHHHHHHHHHhcCC---CCchH-HHH-HHHHHHHHhcCcHHHHHHHHHHHHhcCCccc---HhhHHHHHHHHHh
Q 010320          379 KEDCLEEMEKSINDAFEHKT---SVTTV-RIM-RCIVSSYFRCNAVDKLANFVKRAESAGWRLC---RSLYHSKMVMYAS  450 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~---~~~~~-~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~  450 (513)
                      ..|++++|.+.+.+......   ..... ... ...+..+...|+.+.|.+++...........   ...+..+..++..
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~  703 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL  703 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence            88999999999887754211   11100 001 1122444568899999999877543221111   1113456677889


Q ss_pred             cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          451 QRRVEEMESVLKEMENY----KIDC-SKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      .|++++|..++++....    |... ...++..+..++.+.|+.++|.+.+.+..+..
T Consensus       704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999887653    3222 23456677788999999999999998887654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.70  E-value=7.1e-06  Score=77.82  Aligned_cols=218  Identities=13%  Similarity=0.087  Sum_probs=161.4

Q ss_pred             hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhH
Q 010320          166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDH  244 (513)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~  244 (513)
                      +.+.|++.+|.-.|+......+.+...|-.|.......++-..|+..+.+..+   +.| |....-.|.-.|...|.-..
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhhhhHHH
Confidence            35788899999999988888777889999999999998888888888888875   345 45677788888888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHHccCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCCh
Q 010320          245 MEAAFQEIKDSNLSPNVFTYNYLI-----------AGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNL  312 (513)
Q Consensus       245 A~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~  312 (513)
                      |.+.|+.=+...++     |..+.           ..+.....+....++|-++.. .+..+|...+..|.-.|.-.|++
T Consensus       372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef  446 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF  446 (579)
T ss_pred             HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence            88888876543211     11111           111122234455666666543 45456677777777778888899


Q ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010320          313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND  392 (513)
Q Consensus       313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  392 (513)
                      +.|...|+..... .+.|..+||.|...+....+.++|..++....++.+.-+..+ |+ |.-+|...|.+++|.+.|-+
T Consensus       447 draiDcf~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R-yN-lgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  447 DRAVDCFEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR-YN-LGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHHHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee-hh-hhhhhhhhhhHHHHHHHHHH
Confidence            9999999888875 345788899999888888888888888888888877777777 43 77788888999988888766


Q ss_pred             HH
Q 010320          393 AF  394 (513)
Q Consensus       393 ~~  394 (513)
                      .+
T Consensus       524 AL  525 (579)
T KOG1125|consen  524 AL  525 (579)
T ss_pred             HH
Confidence            44

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.69  E-value=0.00034  Score=67.60  Aligned_cols=336  Identities=12%  Similarity=0.066  Sum_probs=222.6

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      ..|-..+..+.+.|++......|+.....=+.  ...+|...+...-..+-++-++.+++.-.+-     ++..-+--|.
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie  177 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIE  177 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHH
Confidence            46777778888999999999999987765332  5678999999888999999999999988852     4445788889


Q ss_pred             HHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHccCHH---HHHHHHHHHHcCCCCCC--HHHHHHHH
Q 010320          235 VFGRLLLVDHMEAAFQEIKDSN------LSPNVFTYNYLIAGYMTAWMWG---KVEEIYQMMKAGPVMPD--TNTYLLLL  303 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~--~~t~~~ll  303 (513)
                      .+++.+++++|-+.+.......      -+-+...|..+-+..++.-+.-   .+..+++.+..  .-+|  ...|++|.
T Consensus       178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLA  255 (835)
T KOG2047|consen  178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLA  255 (835)
T ss_pred             HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHH
Confidence            9999999999999998876421      2345667777777766654333   33444555443  2355  56889999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHH-------------------HHHHHHHHhCCC--
Q 010320          304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI-------------------KKIEALMRLIPE--  362 (513)
Q Consensus       304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-------------------~~~~~~~~~~~~--  362 (513)
                      +-|.+.|.++.|..+|++....-.  ++.-|+.+.++|..-....-+                   +-.+..++.+..  
T Consensus       256 dYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr  333 (835)
T KOG2047|consen  256 DYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR  333 (835)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence            999999999999999998777532  444455566666532110000                   000111111110  


Q ss_pred             -------------CCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHHhcCcHHHHHHH
Q 010320          363 -------------KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS----VTTVRIMRCIVSSYFRCNAVDKLANF  425 (513)
Q Consensus       363 -------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~  425 (513)
                                   .++..|    +=..-+..|+..+-...+.+.+..-..    -.....|..+...|-..|+++.|..+
T Consensus       334 ~~~lNsVlLRQn~~nV~eW----~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi  409 (835)
T KOG2047|consen  334 PLLLNSVLLRQNPHNVEEW----HKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI  409 (835)
T ss_pred             chHHHHHHHhcCCccHHHH----HhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence                         011111    111112335566667777776653111    11244688899999999999999999


Q ss_pred             HHHHHhcCCccc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----------CC-------CCHHHHHHHHHHHHh
Q 010320          426 VKRAESAGWRLC---RSLYHSKMVMYASQRRVEEMESVLKEMENYK----------ID-------CSKKTFWIMYYAYAT  485 (513)
Q Consensus       426 ~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~-------p~~~~~~~li~~~~~  485 (513)
                      |++..+...+--   ..+|..-...=.++.+++.|+++.+.....-          -.       .+...|..+++.--.
T Consensus       410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs  489 (835)
T KOG2047|consen  410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES  489 (835)
T ss_pred             HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence            999876554322   3344444455567888999999887665321          11       244567777787788


Q ss_pred             cCCHhHHHHHHHHHHHCCCC
Q 010320          486 CGQRRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       486 ~g~~~~A~~~~~~m~~~g~~  505 (513)
                      .|-++....+++++.+..+-
T Consensus       490 ~gtfestk~vYdriidLria  509 (835)
T KOG2047|consen  490 LGTFESTKAVYDRIIDLRIA  509 (835)
T ss_pred             hccHHHHHHHHHHHHHHhcC
Confidence            89999999999999887664

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=0.00051  Score=65.78  Aligned_cols=49  Identities=14%  Similarity=0.076  Sum_probs=35.5

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      .+.+..++|+..++-...   .+..+...-...+-+.|++++|+.+|+.+.+
T Consensus        90 Yrlnk~Dealk~~~~~~~---~~~~ll~L~AQvlYrl~~ydealdiY~~L~k  138 (652)
T KOG2376|consen   90 YRLNKLDEALKTLKGLDR---LDDKLLELRAQVLYRLERYDEALDIYQHLAK  138 (652)
T ss_pred             HHcccHHHHHHHHhcccc---cchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            477888888888872222   1444566666778888999999999998865

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=9.4e-05  Score=64.53  Aligned_cols=193  Identities=11%  Similarity=0.023  Sum_probs=109.8

Q ss_pred             HHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH-HHHH
Q 010320          123 FVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA-LLGA  199 (513)
Q Consensus       123 ~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-li~~  199 (513)
                      +.+++..+-  ++.+.|.+++....++    .+.+......|..+|-...++..|-+.++++-...+. ..-|.. -...
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er----~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~-~~qYrlY~AQS   87 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELER----SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE-LEQYRLYQAQS   87 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHH
Confidence            344444442  2455555555544332    2225566666666667777777777777776654332 111111 1244


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010320          200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF--GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW  277 (513)
Q Consensus       200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  277 (513)
                      +-+.+.+.+|+++...|..    .|+...-..-+.+.  -..+++..+..++++....   -+..+.+.......+.|++
T Consensus        88 LY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqy  160 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQY  160 (459)
T ss_pred             HHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccH
Confidence            5566677777777766642    13322222222222  2346666777777766532   2344444444555678888


Q ss_pred             HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010320          278 GKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK  329 (513)
Q Consensus       278 ~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  329 (513)
                      ++|.+-|+...+ .|.+| ...|+..+- +.+.|+.+.|++...+++++|+..
T Consensus       161 EaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~  211 (459)
T KOG4340|consen  161 EAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQ  211 (459)
T ss_pred             HHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhc
Confidence            888888888776 45553 456666554 445678888888888888877754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.58  E-value=2.1e-05  Score=70.26  Aligned_cols=187  Identities=14%  Similarity=0.031  Sum_probs=111.9

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHH
Q 010320          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI---GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTY  229 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~  229 (513)
                      .....+-.+...+.+.|++++|...|+++....+.+.   .++..+..++...|++++|+..|+++.+...-.|.. .++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            3566777778888899999999999999887655432   567788888999999999999999998652111221 245


Q ss_pred             HHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010320          230 NTLISVFGRL--------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL  301 (513)
Q Consensus       230 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  301 (513)
                      ..+..++.+.        |+.+.|.+.|+++...... +...+..+.... .   ....      ..        .....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~-~---~~~~------~~--------~~~~~  171 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD-Y---LRNR------LA--------GKELY  171 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH-H---HHHH------HH--------HHHHH
Confidence            5555555544        6788888888888865322 222222111100 0   0000      00        01123


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010320          302 LLRGYAHSGNLPRMEKIYELVKHHVD--GKEFPLIRAMICAYSKCSVTDRIKKIEALMRL  359 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  359 (513)
                      +...+.+.|++++|...++...+...  +.....+..+..++.+.|+++++...++.+..
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44456666666666666666655421  12344556666666666666666655554443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.57  E-value=0.00092  Score=64.70  Aligned_cols=222  Identities=8%  Similarity=0.027  Sum_probs=125.9

Q ss_pred             ccCHHHHHHHHHHHHcCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc---HHHHHHHHHHHHhc
Q 010320          274 AWMWGKVEEIYQMMKAGPVMP------DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE---FPLIRAMICAYSKC  344 (513)
Q Consensus       274 ~g~~~~a~~~~~~m~~~g~~p------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~  344 (513)
                      .|+..+....|.+..+. +.|      -...|..+.+.|-..|+++.|..+|++..+-..+--   ..+|..-..+-.+.
T Consensus       360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            45566666666666542 222      135677788888889999999999998877533221   33455555555555


Q ss_pred             CChhHHHHHHHHHHhCCCCCc-------ccc---------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010320          345 SVTDRIKKIEALMRLIPEKEY-------RPW---------LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC  408 (513)
Q Consensus       345 g~~~~a~~~~~~~~~~~~~~~-------~~~---------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  408 (513)
                      .+++.|.++++-...++.+..       .|-         +.+..++.--..|-++....+++.+++.....|..  ...
T Consensus       439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi--i~N  516 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI--IIN  516 (835)
T ss_pred             hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--HHH
Confidence            555554444433333333211       010         01123333334466777777788887765544322  222


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcCCccc-HhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HH
Q 010320          409 IVSSYFRCNAVDKLANFVKRAESAGWRLC-RSLYHSKMVMYAS---QRRVEEMESVLKEMENYKIDCSKKTFWIMY--YA  482 (513)
Q Consensus       409 li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~  482 (513)
                      ....+..+.-++++.+++++-...-.-|+ ...|+..+.-+.+   .-..+.|..+|++..+ |++|...-+-.|+  ..
T Consensus       517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l  595 (835)
T KOG2047|consen  517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL  595 (835)
T ss_pred             HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence            22334456677888888876443332333 3557766665543   3467889999999887 6665433222222  22


Q ss_pred             HHhcCCHhHHHHHHHHH
Q 010320          483 YATCGQRRKVNQVLGLM  499 (513)
Q Consensus       483 ~~~~g~~~~A~~~~~~m  499 (513)
                      --+.|....|++++++.
T Consensus       596 EEe~GLar~amsiyera  612 (835)
T KOG2047|consen  596 EEEHGLARHAMSIYERA  612 (835)
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            23457777888888774

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=0.00041  Score=66.41  Aligned_cols=56  Identities=9%  Similarity=0.007  Sum_probs=39.1

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH--------HHHHCCCCCCC
Q 010320          453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLG--------LMCKNGYDVPV  508 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~  508 (513)
                      ....|.+++...-+..-.-.....-.++.....+|+++.|.+++.        .+.+.+..|-.
T Consensus       356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~  419 (652)
T KOG2376|consen  356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT  419 (652)
T ss_pred             HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH
Confidence            467777777777654422224455567778899999999999999        66666665543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.56  E-value=5.4e-05  Score=78.05  Aligned_cols=222  Identities=14%  Similarity=0.081  Sum_probs=121.8

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------
Q 010320          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-------  225 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-------  225 (513)
                      +.+...+..|+..+...+++++|.++.+...+..+.....|-.+...+...++.+++.-+  .+...  ...+       
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve  103 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVE  103 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHHH
Confidence            346677788888888899999999998877666554555555555577777776666555  33321  1111       


Q ss_pred             ------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010320          226 ------------IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM  293 (513)
Q Consensus       226 ------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  293 (513)
                                  ...+..+..+|-+.|+.++|..+++++.+... -|..+.|.+...|... ++++|.+++.+....   
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---  178 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---  178 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence                        13444455555555566666666666555542 2555555555555555 555555555554432   


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHH
Q 010320          294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLL  373 (513)
Q Consensus       294 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  373 (513)
                                  +...+++..+.++|.++..... .+...+-.+.                +.+......+-...+.-.+
T Consensus       179 ------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l  229 (906)
T PRK14720        179 ------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIE----------------RKVLGHREFTRLVGLLEDL  229 (906)
T ss_pred             ------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHH----------------HHHHhhhccchhHHHHHHH
Confidence                        3344455555555555554321 1222111111                1111111111111112246


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 010320          374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF  414 (513)
Q Consensus       374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  414 (513)
                      -..|-...+++++..+++.+++..  +.+.....-++.+|.
T Consensus       230 ~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~  268 (906)
T PRK14720        230 YEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence            677778888889999988888743  334444556666554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.56  E-value=2.9e-05  Score=73.80  Aligned_cols=253  Identities=10%  Similarity=0.013  Sum_probs=175.3

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHH
Q 010320          236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPR  314 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~  314 (513)
                      +.+.|++..|.-.|+..++..+. +...|-.|.......++-..|+..+++..+  +.|+ ....-.|.-.|...|.-.+
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHH
Confidence            56788899999999988876543 778899998888888888889999988887  4554 6777788888888888888


Q ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHH----HhcCChhHHHHHHHHHHhC---CCCCcccchHHHHHHHHHhcCCHHHHH
Q 010320          315 MEKIYELVKHHVDGKEFPLIRAMICAY----SKCSVTDRIKKIEALMRLI---PEKEYRPWLNVLLIRVYAKEDCLEEME  387 (513)
Q Consensus       315 a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~  387 (513)
                      |.+.++.-+....+ -...-.+-...-    ...-+.+....+.+.|.++   ......+.+...|.-.|--.|++++|.
T Consensus       372 Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai  450 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV  450 (579)
T ss_pred             HHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence            98888876543211 000000000000    0000111122233333222   222345555656888888899999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 010320          388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME--  465 (513)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--  465 (513)
                      +.|+..+.  ..|.+..+||.|...++...+.++|+.-|.++.+....--..-|| |.-.|...|.+++|.+.|-+..  
T Consensus       451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHHh
Confidence            99999988  668899999999999999999999999999998755433334455 5558899999999999886544  


Q ss_pred             -hCC------CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 010320          466 -NYK------IDCSKKTFWIMYYAYATCGQRRKVNQV  495 (513)
Q Consensus       466 -~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~  495 (513)
                       +++      ..++...|..|=.++.-.++.|.+.+.
T Consensus       528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence             331      123456788887888888887755544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.55  E-value=0.00055  Score=61.12  Aligned_cols=201  Identities=9%  Similarity=-0.062  Sum_probs=123.8

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN-TLI  233 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~-~li  233 (513)
                      ++.-.--+-..+...|++..|+.-|....+.++.+-.++-.-...|...|+...|+.=|....+   ++||-..-. --.
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg  113 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRG  113 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhc
Confidence            3334445667777889999999999998886443444444445678888999999998988885   478864332 234


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCC------------HHHH--HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHH
Q 010320          234 SVFGRLLLVDHMEAAFQEIKDSNLSPN------------VFTY--NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY  299 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~------------~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  299 (513)
                      ..+.+.|.+++|..=|+.+++....-+            ...|  ...+..+...|+...|+.....+++-. ..|...|
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~  192 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR  192 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence            567889999999999999987643111            1111  122333445566667777666666632 2355566


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010320          300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI  360 (513)
Q Consensus       300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  360 (513)
                      ..-..+|...|++..|+.-++...+... .+....-.+-..+.+.|+.+.....++...++
T Consensus       193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl  252 (504)
T KOG0624|consen  193 QARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL  252 (504)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence            6666667777777666665555554322 23333444555566666555444444433333

>PLN02789 farnesyltranstransferase

Probab=98.55  E-value=0.00019  Score=66.40  Aligned_cols=132  Identities=11%  Similarity=0.007  Sum_probs=57.9

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC-CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh--HHH
Q 010320          133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN-NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS--DKC  209 (513)
Q Consensus       133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~--~~A  209 (513)
                      ..+.|+.+.+.+.+..    +-+..+|+..-.++.+.| .++++++.++++.+.++++..+|+.-...+.+.|+.  +++
T Consensus        52 ~serAL~lt~~aI~ln----P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e  127 (320)
T PLN02789         52 RSPRALDLTADVIRLN----PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE  127 (320)
T ss_pred             CCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence            4444555555444421    123333333333333334 345555555555554444444454443333333331  344


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010320          210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY  271 (513)
Q Consensus       210 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  271 (513)
                      +++++++.+.  -+-|..+|+...-++.+.|+++++++.++++++.++. |..+|+.....+
T Consensus       128 l~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl  186 (320)
T PLN02789        128 LEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI  186 (320)
T ss_pred             HHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence            4445444432  1233444544444444445555555555555544332 444444444433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.54  E-value=0.00047  Score=74.93  Aligned_cols=302  Identities=8%  Similarity=-0.016  Sum_probs=181.6

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------CCCH--HHHHHHHHH
Q 010320          199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL------SPNV--FTYNYLIAG  270 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~--~~~~~li~~  270 (513)
                      .....|+++.+.+.++.+... ....+..........+...|++++|..++++..+.--      .+..  .....+-..
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~  461 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV  461 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence            344567777777776665321 1111222223444555678999999999988754210      1111  122223345


Q ss_pred             HHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccC---CC--cHHHHHHHHHHH
Q 010320          271 YMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD---GK--EFPLIRAMICAY  341 (513)
Q Consensus       271 ~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~  341 (513)
                      +...|++++|...+++....--..+    ....+.+...+...|++++|...+++......   .+  ....+..+...+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            5679999999999998765311112    23445666777889999999999988764211   11  123445566678


Q ss_pred             HhcCChhHHHHHHHHHHhCCC----CCcc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Q 010320          342 SKCSVTDRIKKIEALMRLIPE----KEYR--PWLNVLLIRVYAKEDCLEEMEKSINDAFEHK---TSVTTVRIMRCIVSS  412 (513)
Q Consensus       342 ~~~g~~~~a~~~~~~~~~~~~----~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~  412 (513)
                      ...|+++.|....+.......    ....  ......+...+...|++++|...+.+.....   ........+..+...
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            889999988776544333211    1111  1112234556677799999999988765521   111123345556677


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCcc-cHhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 010320          413 YFRCNAVDKLANFVKRAESAGWRL-CRSLY-----HSKMVMYASQRRVEEMESVLKEMENYKIDCS---KKTFWIMYYAY  483 (513)
Q Consensus       413 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~  483 (513)
                      +...|+.+.|.+.+..+....... ....+     ...+..+...|+.+.|..++...........   ...+..+..++
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence            888999999999998875421110 01111     1122445568999999999877654321111   11245677888


Q ss_pred             HhcCCHhHHHHHHHHHHH
Q 010320          484 ATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       484 ~~~g~~~~A~~~~~~m~~  501 (513)
                      ...|++++|...+++...
T Consensus       702 ~~~g~~~~A~~~l~~al~  719 (903)
T PRK04841        702 ILLGQFDEAEIILEELNE  719 (903)
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            999999999999988754

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.54  E-value=9e-05  Score=77.42  Aligned_cols=227  Identities=12%  Similarity=0.127  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHH
Q 010320          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMP---DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA  336 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  336 (513)
                      ...|-..|....+.++.++|.+++++.+.. +++-   -...|.++++.-..-|.-+...++|++..+..  ....+|..
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence            345555566666666666666666665442 1110   12344555555555555555666666655532  12334556


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q 010320          337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC  416 (513)
Q Consensus       337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  416 (513)
                      |...|.+.+..++|.+.++.+-+-.......|+  ..+..+.+.++-+.|..++++.++.-............+..-.+.
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~--~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWI--MYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHH--HHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence            666666666666666655555443334444453  466666666666777777776665322222444455556666778


Q ss_pred             CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHhHH
Q 010320          417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK--KTFWIMYYAYATCGQRRKV  492 (513)
Q Consensus       417 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A  492 (513)
                      |+.+.+..+|+.....-.+ -...|+.+|+.-.++|+.+.+..+|++....++.|-.  ..|...+..--+.|+-+.+
T Consensus      1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred             CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence            8888888888877654422 4567888888888888888888888888888776543  3455555555555664443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=0.00051  Score=61.54  Aligned_cols=338  Identities=8%  Similarity=0.087  Sum_probs=198.6

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI-  233 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li-  233 (513)
                      ++-....+++...+.++-++-..+-+.+..    ..+---+|....-..-.+++|+++|......   .|+-...|.-+ 
T Consensus       120 ~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~A  192 (557)
T KOG3785|consen  120 TPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMA  192 (557)
T ss_pred             ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHH
Confidence            455555666777778877776666665544    2233344444444445788999999988865   46666666544 


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--ccCHHHHH--H----------HHHHHHcCC--------
Q 010320          234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT--AWMWGKVE--E----------IYQMMKAGP--------  291 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~a~--~----------~~~~m~~~g--------  291 (513)
                      -+|.+..-++-+.++++--... +.-++..-|.......+  .|+..+.+  +          ..+.+.+++        
T Consensus       193 LCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE  271 (557)
T KOG3785|consen  193 LCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE  271 (557)
T ss_pred             HHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence            4556777777777877766643 22234444544443333  22221111  0          111121111        


Q ss_pred             ----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH-HHh-cCChhHHHHHHHHHHhC
Q 010320          292 ----VMPD-----TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA-YSK-CSVTDRIKKIEALMRLI  360 (513)
Q Consensus       292 ----~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~-~g~~~~a~~~~~~~~~~  360 (513)
                          +-|.     +..-..|+--|.+.+++.+|..+.+++.-  ..|.......++.+ +++ .|.-+...-+.+.|.-.
T Consensus       272 gALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV  349 (557)
T KOG3785|consen  272 GALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV  349 (557)
T ss_pred             cHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence                1111     12233455567889999999888776542  12333333333332 222 23333333344444443


Q ss_pred             CCC----CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Q 010320          361 PEK----EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL  436 (513)
Q Consensus       361 ~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p  436 (513)
                      .+.    +..|. ...+..++.-..++++.+-.++.+..- ...++...| .+.++++..|++.+|+++|-++....++ 
T Consensus       350 G~Sa~ecDTIpG-RQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-  425 (557)
T KOG3785|consen  350 GESALECDTIPG-RQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-  425 (557)
T ss_pred             cccccccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-
Confidence            333    23333 235777777788889988877766542 223333334 4788999999999999999988766655 


Q ss_pred             cHhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCC
Q 010320          437 CRSLY-HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW-IMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF  511 (513)
Q Consensus       437 ~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  511 (513)
                      |..+| ..|.++|.+++..+.|..++-.+...   -+..+.- .+..-|-+++.+--|.+.|+.+...  .|+.+.|
T Consensus       426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW  497 (557)
T KOG3785|consen  426 NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW  497 (557)
T ss_pred             hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence            44555 56678899999999998887666532   2333333 4457788899988888999888755  4555544

>PLN02789 farnesyltranstransferase

Probab=98.51  E-value=0.00031  Score=64.97  Aligned_cols=146  Identities=8%  Similarity=-0.090  Sum_probs=81.9

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      ++..+-..+...++.++|+.+.+++.+..+.+..+|+.--.++...| +++++++.++++.+.  -+-+..+|+...-.+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l  116 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHH
Confidence            34444445555666677777777766665555556665555555555 456667766666653  233444555444444


Q ss_pred             HhcCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010320          237 GRLLLV--DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA  307 (513)
Q Consensus       237 ~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~  307 (513)
                      .+.|..  +.+..+++++.+... -|..+|+....++.+.|+++++++.++++++.+.. |...|+.....+.
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~  187 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVIT  187 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHH
Confidence            444442  455666666665443 25666666666666666666666666666664433 3444544444433

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=0.00074  Score=68.61  Aligned_cols=243  Identities=13%  Similarity=0.150  Sum_probs=129.1

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHH
Q 010320          201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV  280 (513)
Q Consensus       201 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  280 (513)
                      ..++-+++|..+|++..      .+....+.||.-   .+.++.|.++-++..      ...+|..+..+-.+.|.+.+|
T Consensus      1059 i~~~LyEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred             hhhhHHHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence            33444555655555432      234444444433   244555555544432      345677788887788877777


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010320          281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI  360 (513)
Q Consensus       281 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  360 (513)
                      ++-|-+.      -|...|..+++.+.+.|.+++-.+++....+....|.+.  +.||-+|++.+++.+.++.   +.  
T Consensus      1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f---i~-- 1190 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF---IA-- 1190 (1666)
T ss_pred             HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH---hc--
Confidence            7665332      256678888888888888888888887777766666554  4678888887755543322   11  


Q ss_pred             CCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH-----------
Q 010320          361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA-----------  429 (513)
Q Consensus       361 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-----------  429 (513)
                       .++.... . .+.+-|...+.++.|.-+|...          .-|..|...+...|++..|.+--++.           
T Consensus      1191 -gpN~A~i-~-~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1191 -GPNVANI-Q-QVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCF 1257 (1666)
T ss_pred             -CCCchhH-H-HHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence             1111110 1 2444455555555555444321          11333344444444444433322221           


Q ss_pred             -----------HhcC--CcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010320          430 -----------ESAG--WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT  485 (513)
Q Consensus       430 -----------~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  485 (513)
                                 .-.|  +-....-..-++..|-..|-+++-+.+++.-.... +.....|+-|.-.|.+
T Consensus      1258 aCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1258 ACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK 1325 (1666)
T ss_pred             HHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh
Confidence                       1112  22233335566667777777777777666554322 2334455555555554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=0.0013  Score=65.43  Aligned_cols=143  Identities=14%  Similarity=0.063  Sum_probs=82.3

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHH----------HHHhC--------CCCC
Q 010320          163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD----------LKKEA--------NISP  224 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----------m~~~~--------g~~p  224 (513)
                      =+.|-..|.+++|.++-+.--+-.  =..||..-..-+-..++.+.|++.|++          |..++        .-..
T Consensus       833 NKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~  910 (1416)
T KOG3617|consen  833 NKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR  910 (1416)
T ss_pred             HHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc
Confidence            334445555555555544322211  123555555555566777777777763          22210        0122


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010320          225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR  304 (513)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  304 (513)
                      |...|.-....+-..|+++.|+.+|+..++         |-+++...|-.|+.++|-++-++-      -|...+..|.+
T Consensus       911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR  975 (1416)
T KOG3617|consen  911 DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLAR  975 (1416)
T ss_pred             chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHH
Confidence            334445555555667778888877777654         445555566666777766665442      25666677777


Q ss_pred             HHHhcCChHHHHHHHHHH
Q 010320          305 GYAHSGNLPRMEKIYELV  322 (513)
Q Consensus       305 ~~~~~g~~~~a~~~~~~~  322 (513)
                      .|-..|++.+|..+|.+.
T Consensus       976 ~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  976 MYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             HhhhhHHHHHHHHHHHHH
Confidence            777777777777777554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.50  E-value=0.00016  Score=70.64  Aligned_cols=166  Identities=8%  Similarity=0.026  Sum_probs=81.4

Q ss_pred             HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHH
Q 010320          307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM  386 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  386 (513)
                      .....+..|+.+++.+..+..  -...|..+.+.|...|+++.|++.+-.-      +.    +.-.|..|.+.|+|+.|
T Consensus       743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~------~~----~~dai~my~k~~kw~da  810 (1636)
T KOG3616|consen  743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA------DL----FKDAIDMYGKAGKWEDA  810 (1636)
T ss_pred             hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc------ch----hHHHHHHHhccccHHHH
Confidence            344455555555555544321  1223445555555555555544433211      11    11245555566666655


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      .++-.+...  .. .....|-+-..-.-.+|++.+|.+++-.+.    .|+     .-|.+|-+.|..++.+++.++-..
T Consensus       811 ~kla~e~~~--~e-~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~  878 (1636)
T KOG3616|consen  811 FKLAEECHG--PE-ATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG  878 (1636)
T ss_pred             HHHHHHhcC--ch-hHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence            555433221  11 122334333344444555555555443221    122     235566666666666666655432


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320          467 YKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       467 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      .-   -..|...+..-|...|+.+.|.+-|-+.
T Consensus       879 d~---l~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  879 DH---LHDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             hh---hhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence            21   1245666777788888888888766543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=0.0011  Score=67.53  Aligned_cols=240  Identities=11%  Similarity=0.087  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010320          227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY  306 (513)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  306 (513)
                      ..|..+..+-.+.|.+.+|++-|=+.      -|...|..++....+.|.|++-.+.+....++.-.|.+.  +.||-+|
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence            34555555555555555555544322      244455555555555555555555555444444334332  2455555


Q ss_pred             HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh---------------------CCCCCc
Q 010320          307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL---------------------IPEKEY  365 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~  365 (513)
                      ++.+++.+.++++       ..|+......+.+-|...|.++.|.-.+.....                     -...+.
T Consensus      1177 Akt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred             HHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence            5555554443332       123333333333334444433333222221110                     011223


Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-ccHhhHHHH
Q 010320          366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR-LCRSLYHSK  444 (513)
Q Consensus       366 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l  444 (513)
                      ..|.  .+-.+|...+.+..|.     |....... ...-+.-++.-|...|-+++.+.+++...  |+. .....|+-|
T Consensus      1250 ktWK--~VcfaCvd~~EFrlAQ-----iCGL~iiv-hadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1250 KTWK--EVCFACVDKEEFRLAQ-----ICGLNIIV-HADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTEL 1319 (1666)
T ss_pred             hHHH--HHHHHHhchhhhhHHH-----hcCceEEE-ehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHH
Confidence            3332  2333333333333221     22111111 12224556777777777777776666433  221 123345555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320          445 MVMYASQRRVEEMESVLKEME-NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       445 i~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      .-.|++- ++++..+-++-.- +.++       --+++++-++.-|.+..-++.+-
T Consensus      1320 aiLYsky-kp~km~EHl~LFwsRvNi-------pKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1320 AILYSKY-KPEKMMEHLKLFWSRVNI-------PKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred             HHHHHhc-CHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence            5556543 2343333333222 1122       25889999999998887777653

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.49  E-value=1.2e-05  Score=78.26  Aligned_cols=214  Identities=13%  Similarity=0.118  Sum_probs=113.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010320          230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS  309 (513)
Q Consensus       230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  309 (513)
                      ..+...+...|-...|..+|+++.         .|.-+|.+|+..|+..+|..+..+-.+  -.||...|..+.+.....
T Consensus       402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence            445555556666666666666543         255566666666666666666655555  245666666665555444


Q ss_pred             CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHH
Q 010320          310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKS  389 (513)
Q Consensus       310 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  389 (513)
                      .-++.|.++.+.....       .-..+.......++++.+.+-++.--++..-....|.  .+..+..+.++++.|.+.
T Consensus       471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf--~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWF--GLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHH--hccHHHHHHhhhHHHHHH
Confidence            4455555555443221       0011111122244455544444444444444444442  244455555666666666


Q ss_pred             HHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      |..-..  ..|.+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++..
T Consensus       542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            655444  34445555666666666666666666666666655522 344455555555666666666666665543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.49  E-value=0.00014  Score=76.07  Aligned_cols=132  Identities=6%  Similarity=0.019  Sum_probs=53.9

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN  265 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  265 (513)
                      +...|-.-|......++.++|.+++++....-++.-.   ...|.++++.-...|.-+...++|++..+..  -...+|.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence            3344444444444444444444444444432111000   1133333333333344444444444444321  1123344


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320          266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       266 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      .|...|.+.+.+++|.++++.|.++ +.-....|...+..+.+.++-+.|..++.+..
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            4444444444444444444444432 11233344444444444444444444444433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.47  E-value=3.1e-05  Score=75.59  Aligned_cols=240  Identities=11%  Similarity=0.048  Sum_probs=172.5

Q ss_pred             CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320          151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN  230 (513)
Q Consensus       151 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~  230 (513)
                      +++|--..-..+...+.+.|-...|..+|+++        +.|.-.|.+|+..|+.++|.++..+..++   +||..-|.
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc  461 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYC  461 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHH
Confidence            35555555667888889999999999999975        46788899999999999999999888764   79999999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010320          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  310 (513)
                      .+.+......-+++|.++++..-.+       .-..+.....+.++++++.+.|+.-.+.. ..-..+|-..-.+..+.+
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle  533 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE  533 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence            9999998888899999999876542       11111222233688999999888755522 123567888888888899


Q ss_pred             ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010320          311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI  390 (513)
Q Consensus       311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  390 (513)
                      +++.|.+.|...... -+.+...||.+-.+|.+.|+-.++...++...+..-.+...|.|  .+....+.|.+++|.+.+
T Consensus       534 k~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN--ymlvsvdvge~eda~~A~  610 (777)
T KOG1128|consen  534 KEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN--YMLVSVDVGEFEDAIKAY  610 (777)
T ss_pred             hhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec--hhhhhhhcccHHHHHHHH
Confidence            999999999888774 34467789999999999986665555544444444344444443  344557889999999998


Q ss_pred             HHHHhcCCCCchHHHHHHHHHH
Q 010320          391 NDAFEHKTSVTTVRIMRCIVSS  412 (513)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~li~~  412 (513)
                      .++..-.....+..+...++..
T Consensus       611 ~rll~~~~~~~d~~vl~~iv~~  632 (777)
T KOG1128|consen  611 HRLLDLRKKYKDDEVLLIIVRT  632 (777)
T ss_pred             HHHHHhhhhcccchhhHHHHHH
Confidence            8877643322233334444433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=5e-05  Score=75.01  Aligned_cols=150  Identities=13%  Similarity=0.125  Sum_probs=108.3

Q ss_pred             CHHHHHHHHH--HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------CC
Q 010320          155 TKEEYTKGIK--FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI--------SP  224 (513)
Q Consensus       155 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~--------~p  224 (513)
                      |..+-..+++  .|...|+.|.|.+-.+.++     +..+|..|.+.|++.++.|-|.-.+..|..-.|.        .|
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~  799 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG  799 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence            6666666765  4788999999998888775     4579999999999999999888887777542221        22


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010320          225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR  304 (513)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  304 (513)
                      + .+=.-+.-.....|.+++|+.+|.+-+.         |..|=..|-..|.+++|.++-+.=-+-.   =..||..-..
T Consensus       800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~  866 (1416)
T KOG3617|consen  800 E-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAK  866 (1416)
T ss_pred             c-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHH
Confidence            2 2222233334677999999999999875         4556667778899999998876533322   2356666677


Q ss_pred             HHHhcCChHHHHHHHHHH
Q 010320          305 GYAHSGNLPRMEKIYELV  322 (513)
Q Consensus       305 ~~~~~g~~~~a~~~~~~~  322 (513)
                      -+-..++.+.|++.|++.
T Consensus       867 ~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  867 YLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             HHHhhccHHHHHHHHHhc
Confidence            777788899999888764

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.43  E-value=5.4e-05  Score=67.68  Aligned_cols=185  Identities=10%  Similarity=-0.106  Sum_probs=124.7

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--H
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-I---VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV--F  262 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~  262 (513)
                      ....+..+...+...|++++|...|+++...   .|+ .   .++..+..++.+.|++++|+..++++.+.......  .
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESR---YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            5677888888999999999999999999864   343 2   46778889999999999999999999875432111  2


Q ss_pred             HHHHHHHHHHHc--------cCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHH
Q 010320          263 TYNYLIAGYMTA--------WMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL  333 (513)
Q Consensus       263 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  333 (513)
                      ++..+..++.+.        |++++|.+.|+.+...  .|+. ..+..+.....    ...      ...        ..
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~--------~~  168 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA--------GK  168 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH--------HH
Confidence            444455555544        7788999999998774  3442 22222211110    000      000        11


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010320          334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKE-YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH  396 (513)
Q Consensus       334 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  396 (513)
                      ...+...|.+.|+++.|...++.+....+.+ ..+.....+..++...|++++|..+++.+...
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            1245667889999998888776665543332 22222336899999999999999999887664

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.41  E-value=2.7e-05  Score=66.94  Aligned_cols=120  Identities=9%  Similarity=0.068  Sum_probs=91.3

Q ss_pred             ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--hhH
Q 010320          168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF-GRLLL--VDH  244 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~-~~~g~--~~~  244 (513)
                      ..++.+++...++...+..+.+...|..+...|...|++++|...|++..+.  .+-|...+..+..++ ...|+  .++
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            3666777777888877777778888888888888888888888888888763  233566777777653 56666  488


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320          245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       245 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      |.+++++..+.+.. +..++..+...+.+.|++++|+..|+++.+.
T Consensus       129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            88888888876543 6777888888888888888888888888764

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.41  E-value=8.8e-05  Score=63.78  Aligned_cols=162  Identities=14%  Similarity=0.024  Sum_probs=112.7

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      |... ..+-..+.-.|+-+....+..........+....+..+....+.|++.+|...|.+...  .-++|..+|+.+.-
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHH
Confidence            4444 55556666667777777777665554444666777777778888888888888887774  45677778888888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010320          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR  314 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  314 (513)
                      +|-+.|+.+.|..-|.+..+.-. -+...+|.|.-.+.-.|+.+.|..++......+. -|...-..+.......|++++
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHH
Confidence            88888888888887777776433 2445566666666677788888888777766542 256666677777777788887


Q ss_pred             HHHHHHH
Q 010320          315 MEKIYEL  321 (513)
Q Consensus       315 a~~~~~~  321 (513)
                      |..+...
T Consensus       221 A~~i~~~  227 (257)
T COG5010         221 AEDIAVQ  227 (257)
T ss_pred             HHhhccc
Confidence            7776644

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=0.00018  Score=62.88  Aligned_cols=292  Identities=13%  Similarity=0.109  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHH
Q 010320          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL-IAG  270 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~  270 (513)
                      -+++.+..+.+..++++|++++..-.++  -+.+......|..+|-...++..|-..++++-..  .|...-|... ...
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS   87 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            3566677777777777777777766553  1226666777777777777777777777777653  3444444332 234


Q ss_pred             HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChh
Q 010320          271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY--AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD  348 (513)
Q Consensus       271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  348 (513)
                      +-+.+.+..|+.+...|...   ++...-..-+.+.  ...+++-.+..+.++....|   +..+.+.......+.|+++
T Consensus        88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE  161 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE  161 (459)
T ss_pred             HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence            45667777777777776652   2322222222222  23556666666665544321   3333334444455666666


Q ss_pred             HHHHHHHHHHhCCCCCcccch-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHH-------------------HHH
Q 010320          349 RIKKIEALMRLIPEKEYRPWL-NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVR-------------------IMR  407 (513)
Q Consensus       349 ~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~-------------------~~~  407 (513)
                      .|.+-++...+.  .+..+.. | .+.-+..+.|+++.|++...+++++|.... ...                   .-+
T Consensus       162 aAvqkFqaAlqv--sGyqpllAY-niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S  238 (459)
T KOG4340|consen  162 AAVQKFQAALQV--SGYQPLLAY-NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS  238 (459)
T ss_pred             HHHHHHHHHHhh--cCCCchhHH-HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence            444333322222  2333321 2 244455566677777777776666653321 000                   001


Q ss_pred             HHHH-------HHHhcCcHHHHHHHHHHHH-hcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320          408 CIVS-------SYFRCNAVDKLANFVKRAE-SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM  479 (513)
Q Consensus       408 ~li~-------~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  479 (513)
                      .++.       .+.+.|+++.|.+-+..|- +.....|+.|...+.-. -..+++-+..+-+.-+.+.+ +....||..+
T Consensus       239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANl  316 (459)
T KOG4340|consen  239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANL  316 (459)
T ss_pred             HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence            1221       2334566666666666552 11122334443222111 11223333333333333333 3456789999


Q ss_pred             HHHHHhcCCHhHHHHHHHH
Q 010320          480 YYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       480 i~~~~~~g~~~~A~~~~~~  498 (513)
                      +-.||++.-++.|..++-+
T Consensus       317 LllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  317 LLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHhhhHHHhHHHHHHhh
Confidence            9999999988888877643

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=0.0011  Score=62.89  Aligned_cols=359  Identities=10%  Similarity=-0.026  Sum_probs=208.8

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++.+.|...|.......    +++...|..-..+|++.|++++|++=-.+-.+..+.=...|+....++.-.|++++|+
T Consensus        15 ~~d~~~ai~~~t~ai~l~----p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~   90 (539)
T KOG0548|consen   15 SGDFETAIRLFTEAIMLS----PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI   90 (539)
T ss_pred             cccHHHHHHHHHHHHccC----CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence            468888998888776643    5588889999999999999999987776666655444678999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHc----------
Q 010320          211 SLFRDLKKEANISPSIVTYNTLISVFGRL---LLVDHMEAAFQEIKDSN---LSPNVFTYNYLIAGYMTA----------  274 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~----------  274 (513)
                      .-|.+-.+.  .+-|...++-+..++...   ++.-.--.++..+...-   .......|..++..+-+.          
T Consensus        91 ~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d  168 (539)
T KOG0548|consen   91 LAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND  168 (539)
T ss_pred             HHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence            999988764  344566777777777211   00000001111111100   000112233333322111          


Q ss_pred             cCHHHHHHHHHH-----HHcCC-------CCC------------C----------HHHHHHHHHHHHhcCChHHHHHHHH
Q 010320          275 WMWGKVEEIYQM-----MKAGP-------VMP------------D----------TNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       275 g~~~~a~~~~~~-----m~~~g-------~~p------------~----------~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      .++..+...+..     +...|       ..|            |          ..-...+.++..+..+++.|.+-++
T Consensus       169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~  248 (539)
T KOG0548|consen  169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA  248 (539)
T ss_pred             HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence            111111111110     00011       111            1          1234567777778888888888888


Q ss_pred             HHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc--------cchHHHHHHHHHhcCCHHHHHHHHHH
Q 010320          321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--------PWLNVLLIRVYAKEDCLEEMEKSIND  392 (513)
Q Consensus       321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~  392 (513)
                      ...+..  .+..-++..-.+|...|.+......   ...-.+.+-.        ......+..+|.+.++++.++..|.+
T Consensus       249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~---c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k  323 (539)
T KOG0548|consen  249 KALELA--TDITYLNNIAAVYLERGKYAECIEL---CEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK  323 (539)
T ss_pred             HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcc---hHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence            887764  4555566666677777655432221   1111111111        11111244466677788888888877


Q ss_pred             HHhcCCCCchHH------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010320          393 AFEHKTSVTTVR------------------------IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY  448 (513)
Q Consensus       393 ~~~~~~~~~~~~------------------------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  448 (513)
                      .+.....+....                        -...=.+.+.+.|++..|...|.++++.. +-|...|....-+|
T Consensus       324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~  402 (539)
T KOG0548|consen  324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY  402 (539)
T ss_pred             HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence            655332221110                        01112345666788888888888877666 33677777777788


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       449 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+.|.+..|+.=.+...+.+ ++....|..=..++....+|+.|++.|++-++.
T Consensus       403 ~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  403 LKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL  455 (539)
T ss_pred             HHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888888877777766664 444555555555666666777777777766554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.38  E-value=0.00045  Score=71.47  Aligned_cols=237  Identities=12%  Similarity=0.127  Sum_probs=149.9

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL  267 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  267 (513)
                      +...|..|+..+...+++++|.++.+.....   .|+.. .|-.+...+.+.++.+++..+                 .+
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~   89 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NL   89 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence            7889999999999999999999999977754   45543 344444466666665555444                 23


Q ss_pred             HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010320          268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT  347 (513)
Q Consensus       268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  347 (513)
                      +.......++.-+..+...|...+  -+...+..+..+|-+.|+.+++..+|+++.+.. +.|..+.|.+...|... ++
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence            333344445545555555565532  345578888889999999999999999998876 56788888888888888 77


Q ss_pred             hHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010320          348 DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK  427 (513)
Q Consensus       348 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  427 (513)
                      ++|.+...                -.+..+...+++..+.++|.++....  +.+...+-.+                .+
T Consensus       166 ~KA~~m~~----------------KAV~~~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i----------------~~  211 (906)
T PRK14720        166 EKAITYLK----------------KAIYRFIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRI----------------ER  211 (906)
T ss_pred             HHHHHHHH----------------HHHHHHHhhhcchHHHHHHHHHHhcC--cccchHHHHH----------------HH
Confidence            77666533                23444666678888888887777632  2222222222                22


Q ss_pred             HHHhc-CCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          428 RAESA-GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA  484 (513)
Q Consensus       428 ~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  484 (513)
                      .+... |..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus       212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            22111 222223344445555666666677777776666654 234444555555554

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.37  E-value=7.4e-07  Score=52.47  Aligned_cols=34  Identities=15%  Similarity=0.242  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010320          475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV  508 (513)
Q Consensus       475 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  508 (513)
                      +|+++|.+|++.|++++|.++|++|.+.|++||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            5777777777777777777777777777777763

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.37  E-value=0.0017  Score=61.06  Aligned_cols=235  Identities=12%  Similarity=-0.007  Sum_probs=152.5

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCChHH
Q 010320          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL---KTIGTYNALLGAYMYNGLSDK  208 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~  208 (513)
                      .+++.-.++|+.+......|-.|...    ++.-=.-..++..+.+.-++++..+.   ++...+...+.+......-..
T Consensus       217 ydp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~  292 (484)
T COG4783         217 YDPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQ  292 (484)
T ss_pred             CCchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccc
Confidence            35555556666655422222223322    11111223455666666666655433   245556666665544443333


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010320          209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       209 A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  288 (513)
                      +-.++.+-.+.   .-...-|..-+. +...|+.+.|+..++.+..... -|..-+......+.+.++.++|.+.++.+.
T Consensus       293 ~~~~~~~~~~~---~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal  367 (484)
T COG4783         293 AADLLAKRSKR---GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKAL  367 (484)
T ss_pred             hHHHHHHHhCc---cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            33333332221   123334444443 4467889999999999887532 355666666788999999999999999998


Q ss_pred             cCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc
Q 010320          289 AGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP  367 (513)
Q Consensus       289 ~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  367 (513)
                      .  ..|+ ......+..++.+.|++.+|..+++..... .+.|...|..|..+|...|+..++..+              
T Consensus       368 ~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A--------------  430 (484)
T COG4783         368 A--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLA--------------  430 (484)
T ss_pred             h--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHH--------------
Confidence            8  4576 666777888999999999999999888776 456888999999999999987766553              


Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010320          368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHK  397 (513)
Q Consensus       368 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  397 (513)
                           ....|...|+++.|+..+....+..
T Consensus       431 -----~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         431 -----RAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             -----HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence                 4566778899999998887776643

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.36  E-value=7.2e-07  Score=52.52  Aligned_cols=33  Identities=33%  Similarity=0.420  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010320          263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD  295 (513)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  295 (513)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            566777777777777777777777776666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=0.0028  Score=60.28  Aligned_cols=92  Identities=11%  Similarity=0.054  Sum_probs=70.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC
Q 010320          374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR  453 (513)
Q Consensus       374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  453 (513)
                      ...+.+.|++..|...|.+++...  |.+...|....-+|.+.|.+..|+.=-+...+.. ++....|.-=..++....+
T Consensus       365 Gne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~  441 (539)
T KOG0548|consen  365 GNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKE  441 (539)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHH
Confidence            456677899999999999999854  7789999999999999999999988777666553 1223334433445555678


Q ss_pred             HHHHHHHHHHHHhCC
Q 010320          454 VEEMESVLKEMENYK  468 (513)
Q Consensus       454 ~~~A~~~~~~m~~~~  468 (513)
                      ++.|.+.|++-.+.+
T Consensus       442 ydkAleay~eale~d  456 (539)
T KOG0548|consen  442 YDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            899999999988776

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.33  E-value=0.00054  Score=67.17  Aligned_cols=139  Identities=16%  Similarity=0.221  Sum_probs=98.5

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010320          161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL  240 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g  240 (513)
                      ..+.+..+...|.+|+.+++.+..+... ..-|..+..-|+..|+++.|.++|.+.-          .++-.|..|.+.|
T Consensus       737 kaieaai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~  805 (1636)
T KOG3616|consen  737 KAIEAAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAG  805 (1636)
T ss_pred             HHHHHHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccc
Confidence            3455667888999999999988876432 3357788888999999999999986542          3456788899999


Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010320          241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      +|++|.++-++..  |.+.....|-.-..-+-+.|++.+|+++|-.+..    |+.     .|..|-+.|..++.+++.+
T Consensus       806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~  874 (1636)
T KOG3616|consen  806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVE  874 (1636)
T ss_pred             cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHH
Confidence            9999998877764  4455566676666667778888888877644322    432     3455666666666655554


Q ss_pred             H
Q 010320          321 L  321 (513)
Q Consensus       321 ~  321 (513)
                      +
T Consensus       875 k  875 (1636)
T KOG3616|consen  875 K  875 (1636)
T ss_pred             H
Confidence            3

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.33  E-value=0.00034  Score=71.48  Aligned_cols=183  Identities=7%  Similarity=-0.059  Sum_probs=138.8

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010320          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT  231 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~  231 (513)
                      .+.+...+-.|..+..+.|+.++|..+++...+..+.+......+...+.+.+++++|+..+++....  -+-+....+.
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence            45578999999999999999999999999999987778899999999999999999999999999864  3445567788


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010320          232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN  311 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  311 (513)
                      +..++.+.|++++|+.+|++....+. -+..++..+..++-+.|+.++|...|+...+. ..+....|+..+.-      
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~------  231 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLVD------  231 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHHH------
Confidence            88999999999999999999997432 24788888999999999999999999998763 13445566655433      


Q ss_pred             hHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHhc
Q 010320          312 LPRMEKIYELVKHHV----DGKEFPLIRAMICAYSKC  344 (513)
Q Consensus       312 ~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~  344 (513)
                      +..-..+++++.-.+    .+....+...+|..|.+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (694)
T PRK15179        232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR  268 (694)
T ss_pred             HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence            233344555544332    222333445555555543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.32  E-value=0.00022  Score=61.39  Aligned_cols=158  Identities=9%  Similarity=-0.006  Sum_probs=126.2

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +..+ ..+-..+...|+-+....+......  ...-|....+..+....+.|++..|...|.+..... .+|...|+.+.
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg  141 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG  141 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence            5555 5566777888999999888888664  335566677779999999999999999999998654 46899999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010320          269 AGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT  347 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  347 (513)
                      -+|.+.|++++|..-|.+..+  +.| +...++.|.-.+.-.|+.+.|..++......+. -|..+-..+.......|++
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDF  218 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCCh
Confidence            999999999999999999887  333 467788888888999999999999988877643 3556666677777777877


Q ss_pred             hHHHHH
Q 010320          348 DRIKKI  353 (513)
Q Consensus       348 ~~a~~~  353 (513)
                      +.|+.+
T Consensus       219 ~~A~~i  224 (257)
T COG5010         219 REAEDI  224 (257)
T ss_pred             HHHHhh
Confidence            766554

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.31  E-value=1.3e-06  Score=51.03  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010320          474 KTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDV  506 (513)
Q Consensus       474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  506 (513)
                      .+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777766

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.29  E-value=1e-06  Score=51.44  Aligned_cols=32  Identities=28%  Similarity=0.292  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010320          263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP  294 (513)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  294 (513)
                      +||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            44444444444444444444444444444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.28  E-value=6.9e-05  Score=60.81  Aligned_cols=90  Identities=11%  Similarity=-0.177  Sum_probs=37.8

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010320          197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                      ...+...|++++|...|+.....  -+.+...|..+..++.+.|++++|+..|++..+... .+...+..+..++.+.|+
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCC
Confidence            33444444444444444444421  122333444444444444444444444444443322 233444444444444444


Q ss_pred             HHHHHHHHHHHHc
Q 010320          277 WGKVEEIYQMMKA  289 (513)
Q Consensus       277 ~~~a~~~~~~m~~  289 (513)
                      +++|+..|+...+
T Consensus       108 ~~eAi~~~~~Al~  120 (144)
T PRK15359        108 PGLAREAFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.28  E-value=4.2e-05  Score=65.71  Aligned_cols=92  Identities=5%  Similarity=0.013  Sum_probs=41.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-HhcCc--HHHHHHHHHHHHhcCCcccHhhHHHHHHHHH
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY-FRCNA--VDKLANFVKRAESAGWRLCRSLYHSKMVMYA  449 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  449 (513)
                      +...|...|++++|...|++..+.  .|.+..++..+..++ ...|+  .++|.+++++..+.... +...+..+...+.
T Consensus        79 Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~  155 (198)
T PRK10370         79 LGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAF  155 (198)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHH
Confidence            444445555555555555544442  233333444444432 33333  24555555554443322 3344444444445


Q ss_pred             hcCCHHHHHHHHHHHHhC
Q 010320          450 SQRRVEEMESVLKEMENY  467 (513)
Q Consensus       450 ~~g~~~~A~~~~~~m~~~  467 (513)
                      +.|++++|...|+++.+.
T Consensus       156 ~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        156 MQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HcCCHHHHHHHHHHHHhh
Confidence            555555555555555443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.24  E-value=6.9e-05  Score=60.81  Aligned_cols=99  Identities=10%  Similarity=-0.114  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      +..+..+...+...|++++|...|+......+.+...|..+...+.+.|++++|+..|+.....  .+.+...+..+..+
T Consensus        24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~  101 (144)
T PRK15359         24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVC  101 (144)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHH
Confidence            3345567788899999999999999999988779999999999999999999999999999963  35677899999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCC
Q 010320          236 FGRLLLVDHMEAAFQEIKDSN  256 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g  256 (513)
                      +.+.|+.++|+..|+...+..
T Consensus       102 l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        102 LKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC
Confidence            999999999999999998754

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.24  E-value=0.00018  Score=73.47  Aligned_cols=169  Identities=9%  Similarity=-0.011  Sum_probs=130.9

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHH
Q 010320          129 QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDK  208 (513)
Q Consensus       129 ~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~  208 (513)
                      .-.+..++|..+++...+.    .|-+......+..++.+.+++++|+..+++.....+.+....+.+..++.+.|++++
T Consensus        97 ~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~  172 (694)
T PRK15179         97 EAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQ  172 (694)
T ss_pred             HHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHH
Confidence            3367899999999988763    233566667889999999999999999999999888899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010320          209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       209 A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  288 (513)
                      |.++|++....  .+-+..++..+..++-+.|+.++|...|++..+.- .+....|+..+.      ++..-..+++.+.
T Consensus       173 A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~  243 (694)
T PRK15179        173 ADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRLG  243 (694)
T ss_pred             HHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHcC
Confidence            99999999963  23347899999999999999999999999998642 345566666553      3455566677765


Q ss_pred             cCC----CCCCHHHHHHHHHHHHhcC
Q 010320          289 AGP----VMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       289 ~~g----~~p~~~t~~~ll~~~~~~g  310 (513)
                      -.+    ......+...+|.-+.+..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (694)
T PRK15179        244 VEGDGRDVPVSILVLEKMLQEIGRRR  269 (694)
T ss_pred             cccccCCCceeeeeHHHHHHHHhhcC
Confidence            543    3333455566666665543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.24  E-value=7.2e-05  Score=60.23  Aligned_cols=96  Identities=11%  Similarity=-0.049  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010320          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG  270 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (513)
                      .....+...+...|++++|.+.|+.+...  .+.+...|..+...+.+.|++++|..+|++..+.+. .+...+..+...
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~   94 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAEC   94 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHH
Confidence            33344444444444444444444444432  122334444444444444444444444444443321 233344444444


Q ss_pred             HHHccCHHHHHHHHHHHHc
Q 010320          271 YMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       271 ~~~~g~~~~a~~~~~~m~~  289 (513)
                      +...|++++|.+.|+...+
T Consensus        95 ~~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        95 LLALGEPESALKALDLAIE  113 (135)
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            4444444444444444444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.20  E-value=0.00073  Score=68.62  Aligned_cols=110  Identities=6%  Similarity=0.007  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010320          384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE  463 (513)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  463 (513)
                      +.|+..+++.++  ...++..+||.|.-. ...|++.-+..-|-.-.... +-...+|..+-..+.+..+++.|...|..
T Consensus       800 ~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~  875 (1238)
T KOG1127|consen  800 CTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSS  875 (1238)
T ss_pred             HHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHh
Confidence            356666665554  223345556655433 44455555554444333222 12344555555566677777777777777


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010320          464 MENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       464 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  498 (513)
                      .+..+ +-|...|--........|+.-++..+|..
T Consensus       876 ~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  876 VQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             hhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            77655 34555555444444555655555555543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.19  E-value=0.00018  Score=67.31  Aligned_cols=164  Identities=14%  Similarity=0.022  Sum_probs=108.5

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHH
Q 010320          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYNT  231 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~  231 (513)
                      .|+...+...+........-..+..++..-.+.  .-...+--....+...|++++|+..++.+.+.   .||. .-+..
T Consensus       271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~  345 (484)
T COG4783         271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLEL  345 (484)
T ss_pred             CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHH
Confidence            356666666666554444444444444333331  12223333333455678888888888888764   4544 44455


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010320          232 LISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  310 (513)
                      ....+.+.++.++|.+.++.+...  .|+ ...+-.+..+|.+.|++.+|+.+++...... +-|...|..|.++|...|
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g  422 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELG  422 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhC
Confidence            667788888888888888888875  355 4555666778888888888888888877653 446788888888888888


Q ss_pred             ChHHHHHHHHHHHh
Q 010320          311 NLPRMEKIYELVKH  324 (513)
Q Consensus       311 ~~~~a~~~~~~~~~  324 (513)
                      +..++.....+...
T Consensus       423 ~~~~a~~A~AE~~~  436 (484)
T COG4783         423 NRAEALLARAEGYA  436 (484)
T ss_pred             chHHHHHHHHHHHH
Confidence            88887777666543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.16  E-value=0.011  Score=58.96  Aligned_cols=130  Identities=8%  Similarity=-0.032  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 010320          333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS  412 (513)
Q Consensus       333 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  412 (513)
                      .|......+.+.+..+.+..++.....+..  ..++.+......+...|++++|.+.|.....  ..|.++....++...
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~--l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~  727 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDP--LSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAEL  727 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcch--hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence            344555666777777776655554444442  2233333455677788999999999988777  445566678899999


Q ss_pred             HHhcCcHHHHHH--HHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320          413 YFRCNAVDKLAN--FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       413 ~~~~~~~~~a~~--~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      +...|+...|..  ++.++.+.+.. +...|-.+...+-+.|+.++|.+.|.-..+.
T Consensus       728 lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  728 LLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            999998888888  99999988854 7889999999999999999999999877654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=0.0032  Score=54.04  Aligned_cols=190  Identities=11%  Similarity=-0.004  Sum_probs=134.5

Q ss_pred             CChHHHHHHHHHHHHcCCCC-CCCCHHH-HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010320          132 SRPRLALEVLNWRRRQAGYG-TPMTKEE-YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC  209 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A  209 (513)
                      +++++.++++..+......| ..++..+ |..++-+....|+.+.|..+++++..+-+.+..+--.-.-.+-..|++++|
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence            47777778777776655555 4555543 456666777889999999999998887643433322222334456899999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       210 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +++++.+..+  -+-|.++|--=+-..-..|.--+|++-+.+..+. +..|...|.-+-..|...|++++|.-.+++|.-
T Consensus       106 ~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  106 IEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            9999999975  3566777766666666667777888877777664 446999999999999999999999999999887


Q ss_pred             CCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHhcc
Q 010320          290 GPVMPDT-NTYLLLLRGYAH---SGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       290 ~g~~p~~-~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~  326 (513)
                        +.|-. ..+..+...+.-   ..+++.+.++|.+..+..
T Consensus       183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence              45653 344444444433   336777888888888753

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.0017  Score=56.09  Aligned_cols=216  Identities=12%  Similarity=0.055  Sum_probs=96.6

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010320          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME  246 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~  246 (513)
                      .-.|++..++..-+...... .++..-.-+-++|...|.+...   ..+++.  |-.|.......+.......++.+.-+
T Consensus        19 fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~---~~eI~~--~~~~~lqAvr~~a~~~~~e~~~~~~~   92 (299)
T KOG3081|consen   19 FYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIV---ISEIKE--GKATPLQAVRLLAEYLELESNKKSIL   92 (299)
T ss_pred             HHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccc---cccccc--ccCChHHHHHHHHHHhhCcchhHHHH
Confidence            33455555544433332221 1233333344555555554322   233332  22344444444444444344433333


Q ss_pred             -HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320          247 -AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       247 -~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                       ++.+.+......-+......-...|+..|++++|++......      +......=...+.+..+++-|.+.+++|.+.
T Consensus        93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i  166 (299)
T KOG3081|consen   93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI  166 (299)
T ss_pred             HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence             233333333232232333333345666677777776665511      2223333344455666667777777776664


Q ss_pred             cCCCcHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCcccc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010320          326 VDGKEFPLIRAMICAYSKC-SVTDRIKKIEALMRLIPEKEYRPW-LNVLLIRVYAKEDCLEEMEKSINDAFEHK  397 (513)
Q Consensus       326 ~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~  397 (513)
                      .   +..+.+-|..++.+. +.-+++..++-+|+++.++-...+ +-+-...++...|++++|..++++.+.+.
T Consensus       167 d---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd  237 (299)
T KOG3081|consen  167 D---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD  237 (299)
T ss_pred             c---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            2   344455555554432 111234455555555555333222 11123344444556666666666555543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.12  E-value=0.0057  Score=58.30  Aligned_cols=211  Identities=18%  Similarity=0.140  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHHhccCC-CHhHHHHHHHHHH---HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010320          172 VDLAADLFAEAANKHLK-TIGTYNALLGAYM---YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA  247 (513)
Q Consensus       172 ~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  247 (513)
                      .+++..+++.....-.. +.-+|..+..---   ...+.+...++++++.....+.|+ .+|..+|+.-.+..-++.|..
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~  387 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK  387 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence            46666777765543222 4444444433211   112467788888888876455555 478888999999999999999


Q ss_pred             HHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010320          248 AFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       248 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                      +|.+..+.+..+ ++.+++++|..||. ++.+-|.++|+.=.+. ..-+..-...-+.-+...|+-..+..+|+.....+
T Consensus       388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~  465 (656)
T KOG1914|consen  388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV  465 (656)
T ss_pred             HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence            999999988777 88999999998876 6889999999874442 12234444566777788899999999999999986


Q ss_pred             CCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CcccchHHHHHHHHHhcCCHHH
Q 010320          327 DGKE--FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK--EYRPWLNVLLIRVYAKEDCLEE  385 (513)
Q Consensus       327 ~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~  385 (513)
                      .+++  ...|..+++--..-|++..+.++.+.....-+.  .........+++-|.-.+.+..
T Consensus       466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c  528 (656)
T KOG1914|consen  466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC  528 (656)
T ss_pred             CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence            6664  468999999999999988877775544333221  1111112245666665554433

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.11  E-value=6.2e-05  Score=71.32  Aligned_cols=134  Identities=13%  Similarity=0.063  Sum_probs=103.3

Q ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010320          140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL--K-TIGTYNALLGAYMYNGLSDKCQSLFRDL  216 (513)
Q Consensus       140 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m  216 (513)
                      ++..|.+.-..+.+-+......+++.+....+++.+.+++-+.....-  . -..+.+++|+.|.+.|..++++++++.=
T Consensus        50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~  129 (429)
T PF10037_consen   50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR  129 (429)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence            444444443333455777788888888888888889888888776522  1 2456678999999999999999999887


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010320          217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       217 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      .. +|+-||..++|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus       130 ~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  130 LQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hh-cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            75 5999999999999999999999999999998888777767777777777776665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.0016  Score=56.31  Aligned_cols=50  Identities=6%  Similarity=0.067  Sum_probs=23.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010320          380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES  431 (513)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  431 (513)
                      .+++..|.-+|++|-++  .+++..+.+....++...|++++|..+++....
T Consensus       186 gek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~  235 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD  235 (299)
T ss_pred             chhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence            34455555555554442  122333444444444555555555555555443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.10  E-value=6.7e-05  Score=55.56  Aligned_cols=79  Identities=23%  Similarity=0.402  Sum_probs=49.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCCCHHHH
Q 010320          194 NALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLL--------VDHMEAAFQEIKDSNLSPNVFTY  264 (513)
Q Consensus       194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~g~~p~~~~~  264 (513)
                      ...|..+...+++...-.+|+.+++. |+ .|+..+|+.++.+.++..-        +-..+.+|++|...+++|+..+|
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34455555567777777777777764 77 7777777777777665431        23345566666666666666666


Q ss_pred             HHHHHHHHH
Q 010320          265 NYLIAGYMT  273 (513)
Q Consensus       265 ~~li~~~~~  273 (513)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            666655544

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.08  E-value=0.0072  Score=54.25  Aligned_cols=270  Identities=7%  Similarity=-0.062  Sum_probs=160.3

Q ss_pred             CHHHHHHHH---HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH----
Q 010320          155 TKEEYTKGI---KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV----  227 (513)
Q Consensus       155 ~~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~----  227 (513)
                      |+..|-++.   ..|...|+...|+.=++...+..+.-...--.-...+.+.|.+++|..=|+...+.   .|+..    
T Consensus        68 dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~e  144 (504)
T KOG0624|consen   68 DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLE  144 (504)
T ss_pred             CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHH
Confidence            444554443   34566677777776666666643221111111123466778888888888877754   23211    


Q ss_pred             HH------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010320          228 TY------------NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD  295 (513)
Q Consensus       228 ~~------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  295 (513)
                      .+            ...+..+.-.|+...|++....+++..+ -|...|..-..+|...|++..|+.=++...+-. .-+
T Consensus       145 aqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~Dn  222 (504)
T KOG0624|consen  145 AQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDN  222 (504)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccc
Confidence            11            2234445567888888888888887654 477888888888888888888887666554422 224


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH-------------HHHhcCChhHHHHHHHHHHhCCC
Q 010320          296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC-------------AYSKCSVTDRIKKIEALMRLIPE  362 (513)
Q Consensus       296 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-------------~~~~~g~~~~a~~~~~~~~~~~~  362 (513)
                      ..++--+-..+...|+.+.++....+..+.+  ||-..+-..-.             .....+++-+..+..+...+..+
T Consensus       223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep  300 (504)
T KOG0624|consen  223 TEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP  300 (504)
T ss_pred             hHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence            6666677777788888888888877777642  33322111100             11122333333333222222221


Q ss_pred             CCccc--chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010320          363 KEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG  433 (513)
Q Consensus       363 ~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  433 (513)
                      .....  .....+-.++...+++.+|++...+++.  ..+.+..++.--..+|.-...++.|+.=|+...+.+
T Consensus       301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             cccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            11111  1122345566667888888888888777  556677777777778888888888888888776554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.08  E-value=0.00016  Score=58.22  Aligned_cols=107  Identities=10%  Similarity=-0.109  Sum_probs=89.4

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      +......+...+.+.|++++|.+.|+.....++.+...|..+...+.+.|++++|..+|+...+.  .+.+..++..+..
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~   93 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAE   93 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHH
Confidence            44556677788889999999999999998877778899999999999999999999999998763  3556788888889


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 010320          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN  265 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  265 (513)
                      .+...|+++.|...|++..+..  |+...+.
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~  122 (135)
T TIGR02552        94 CLLALGEPESALKALDLAIEIC--GENPEYS  122 (135)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence            9999999999999999998753  5544443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.07  E-value=0.00022  Score=67.37  Aligned_cols=120  Identities=15%  Similarity=0.107  Sum_probs=54.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010320          195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      .|+..+...++++.|+++|+++.+.   .|+.  ...++..+...++-.+|.+++++..+... -|....+.-...|.+.
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence            3344444444455555555554432   2332  22244444444444455555544443221 2333344444444455


Q ss_pred             cCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010320          275 WMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELV  322 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~  322 (513)
                      ++++.|+++.+++.+  ..|+ -.+|..|..+|...|+++.|+..+..+
T Consensus       248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            555555555555544  2333 235555555555555555555554443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.06  E-value=6.5e-05  Score=71.17  Aligned_cols=121  Identities=12%  Similarity=0.110  Sum_probs=103.5

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL  267 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  267 (513)
                      +......+++.+....+.+.+..++-+.+.... ...-..|..++|+.|.+.|..+.++.+++.=...|+-||..++|.|
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            777888888888888889999999998886411 1112235579999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010320          268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS  309 (513)
Q Consensus       268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  309 (513)
                      |+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999998877777888888888888776

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.06  E-value=8.1e-05  Score=55.13  Aligned_cols=79  Identities=16%  Similarity=0.225  Sum_probs=57.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHcCCCCCCHHHHH
Q 010320          230 NTLISVFGRLLLVDHMEAAFQEIKDSNL-SPNVFTYNYLIAGYMTAWM--------WGKVEEIYQMMKAGPVMPDTNTYL  300 (513)
Q Consensus       230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~p~~~t~~  300 (513)
                      ...|.-|...+++...-.+|+.++..|+ .|++.+|+.++.+.++..-        .-+.+.+|+.|...+++|+..||+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            4455566666888888888888888888 7888888888887776432        234566777777777888888888


Q ss_pred             HHHHHHHh
Q 010320          301 LLLRGYAH  308 (513)
Q Consensus       301 ~ll~~~~~  308 (513)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            87777654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.05  E-value=0.0001  Score=61.80  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010320          277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN  311 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  311 (513)
                      -+-|++++++|...|+.||..|+..|++.+.+.+.
T Consensus       119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            45677777888888888888888888777766554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.04  E-value=4.4e-06  Score=47.46  Aligned_cols=29  Identities=31%  Similarity=0.525  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010320          263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      +||.+|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            34445555555555555555555544443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.01  E-value=6.9e-06  Score=46.65  Aligned_cols=30  Identities=23%  Similarity=0.325  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010320          475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       475 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  504 (513)
                      +|+.++++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            466666666666666666666666666553

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.01  E-value=0.0076  Score=60.92  Aligned_cols=137  Identities=13%  Similarity=0.114  Sum_probs=92.3

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010320          198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV--FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW  275 (513)
Q Consensus       198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  275 (513)
                      -.....+++.+|+....++.++   .||. .|..++.+  ..+.|..++|..+++.....+.. |..|...+-.+|...|
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk---~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~   91 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKK---HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG   91 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHH---CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh
Confidence            3445677888888888888876   3554 34444444  35778888888888887766554 7888888888888888


Q ss_pred             CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010320          276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS  342 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (513)
                      +.++|..+|+...+.  -|+..-...+..+|.+.+++.+-.++--++.+. .+.+...+=+++..+.
T Consensus        92 ~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen   92 KLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLIL  155 (932)
T ss_pred             hhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHH
Confidence            888888888888763  477777777888888887766544443333332 2334444444444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.00  E-value=0.00041  Score=56.50  Aligned_cols=123  Identities=15%  Similarity=0.095  Sum_probs=61.4

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYN  230 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~  230 (513)
                      .|..++..+ ..++...+.+.++.+...+..+   ....-.+...+...|++++|...|+..... .  ||.    ...-
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~--~d~~l~~~a~l   89 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-A--PDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--CCHHHHHHHHH
Confidence            344444444 3555566666666665544433   122222334555566666666666666543 2  222    1223


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010320          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM  286 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (513)
                      .|...+...|++++|+..++......  .....+......|.+.|++++|...|+.
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34455555666666666665533221  2233444555556666666666665554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.98  E-value=0.0003  Score=66.44  Aligned_cols=125  Identities=10%  Similarity=0.007  Sum_probs=94.8

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010320          159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR  238 (513)
Q Consensus       159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~  238 (513)
                      -..|+..+...++++.|.++|+++.+..   +.....+++.+...++..+|.+++++..+.  .+-|......-...+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence            3455666667788888888888888764   345556777787888888888888888864  34466677777777888


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      .++.+.|+++.+++.+..+ -+..+|..|..+|.+.|+++.|+-.++.+-.
T Consensus       247 k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            8888888888888887532 2456888888888888888888888877654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.0077  Score=51.81  Aligned_cols=144  Identities=11%  Similarity=-0.021  Sum_probs=66.8

Q ss_pred             cCChHHHHHHHHHHHHhC--C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHccCH
Q 010320          203 NGLSDKCQSLFRDLKKEA--N-ISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI-AGYMTAWMW  277 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~--g-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~  277 (513)
                      ..+.++..+++.++....  | ..++.. .|-.++-+....|+.+.|...++++...-  |...-...|= -.+-..|.+
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence            345666666666665321  2 334432 33444455555666666666666655432  2221111111 112224556


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHH
Q 010320          278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI  350 (513)
Q Consensus       278 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  350 (513)
                      ++|+++|+.+.+.. +.|.++|---+-..-..|+--+|++-+....+. +..|...|.-+.+.|...|++++|
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA  173 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA  173 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence            66666666665544 234445544444444444444444444444333 333444444444444444444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.95  E-value=0.00044  Score=56.32  Aligned_cols=126  Identities=17%  Similarity=0.115  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHH
Q 010320          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV--FTY  264 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~  264 (513)
                      ..|..++..+ ..++...+.+.++.+....   |+.    ...-.+...+...|++++|...|+........++.  ...
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            3455555555 4788888888888888752   332    23334557778889999999999988876533322  234


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010320          265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV  322 (513)
Q Consensus       265 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~  322 (513)
                      -.|...+...|++++|+..++......  .....+......+.+.|+.++|...|+..
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            446677788888999988887644333  23456667788888888888888888753

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.93  E-value=0.00025  Score=59.54  Aligned_cols=102  Identities=12%  Similarity=0.147  Sum_probs=62.2

Q ss_pred             CHHHHHHHHHHhc-----ccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHH
Q 010320          155 TKEEYTKGIKFAG-----RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT  228 (513)
Q Consensus       155 ~~~~~~~ll~~~~-----~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~  228 (513)
                      |..+|..+++.|.     +.|.++-....+..|.+-|+. |..+|+.|+..+=+ |.+- -..+|+.+--.         
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h---------  114 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH---------  114 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc---------
Confidence            6666666666654     235555555566666666654 66666666655544 2211 11222222110         


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010320          229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                               --.+.+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus       115 ---------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  115 ---------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             ---------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                     012356789999999999999999999999999877653

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.84  E-value=0.05  Score=56.03  Aligned_cols=180  Identities=8%  Similarity=-0.071  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010320          314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA  393 (513)
Q Consensus       314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  393 (513)
                      .|...++..++. ...+..+|+.|--. ...|.+.-+...+-.-....+.....|.|  +...+.++.+++.|...|...
T Consensus       801 ~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N--lgvL~l~n~d~E~A~~af~~~  876 (1238)
T KOG1127|consen  801 TAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN--LGVLVLENQDFEHAEPAFSSV  876 (1238)
T ss_pred             HHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec--cceeEEecccHHHhhHHHHhh
Confidence            445555554443 12344455544433 44444444444443333344444555543  444566677888888888766


Q ss_pred             HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH----HhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 010320          394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA----ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN---  466 (513)
Q Consensus       394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---  466 (513)
                      ..  ..|.+...|-.....-...|+.-+...+|..-    ...|-.++..-|-+...-....|+.++-+...+.+-.   
T Consensus       877 qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~  954 (1238)
T KOG1127|consen  877 QS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL  954 (1238)
T ss_pred             hh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence            55  44555555544444444567777777777652    1233344444444444444556665554443332222   


Q ss_pred             ------CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320          467 ------YKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       467 ------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                            .+.+-+...|.+.....-+.+.+..|.++..+.
T Consensus       955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl  993 (1238)
T KOG1127|consen  955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL  993 (1238)
T ss_pred             HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence                  244555667777777777777777777766554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.81  E-value=0.00098  Score=52.08  Aligned_cols=96  Identities=16%  Similarity=0.030  Sum_probs=42.7

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 010320          160 TKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS-PSIVTYNTLISV  235 (513)
Q Consensus       160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-p~~~~~~~li~~  235 (513)
                      -.+...+.+.|++++|.+.|+.+......+   ...+..+...+.+.|++++|...|+.+.....-. .....+..+..+
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            334444445555555555555554433211   2334444455555555555555555544321000 012334444444


Q ss_pred             HHhcCChhHHHHHHHHHHHC
Q 010320          236 FGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~  255 (513)
                      +.+.|+.++|...++++.+.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHhCChHHHHHHHHHHHHH
Confidence            44555555555555555443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.80  E-value=0.00062  Score=62.17  Aligned_cols=129  Identities=16%  Similarity=0.162  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA-YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      .+|..++...-+.+..+.|..+|.+..+.+.-+..+|-..... |...++.+.|..+|+...+.  +..+...|..-++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence            3567777777777778888888888775443344444444444 33346666688888887765  45566777777788


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          236 FGRLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +.+.|+.+.|..+|++.... + +..    ..|...+..=.+.|+.+.+.++.+++.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88888888888888887754 3 333    3777777777777777777777777766

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.77  E-value=0.00049  Score=50.90  Aligned_cols=93  Identities=14%  Similarity=0.110  Sum_probs=45.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010320          194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT  273 (513)
Q Consensus       194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  273 (513)
                      ..+...+...|++++|...|++..+.  .+.+...+..+...+...|++++|.+.|++...... .+..++..+...+..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~   80 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence            33444445555555555555555432  122224444455555555555555555555544322 123445555555555


Q ss_pred             ccCHHHHHHHHHHHHc
Q 010320          274 AWMWGKVEEIYQMMKA  289 (513)
Q Consensus       274 ~g~~~~a~~~~~~m~~  289 (513)
                      .|++++|...++...+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            5555555555555443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.66  E-value=0.053  Score=50.87  Aligned_cols=122  Identities=9%  Similarity=0.013  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHH----HHHHhc---CcHHHHHHHHHHHHhcCCcccH----hhHHHHHH--HHH
Q 010320          383 LEEMEKSINDAFEHKTSVTTVRIMRCIV----SSYFRC---NAVDKLANFVKRAESAGWRLCR----SLYHSKMV--MYA  449 (513)
Q Consensus       383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~---~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~--~~~  449 (513)
                      -++|+++++.+++  ..+.+...-|.+.    .+|...   ..+..-..+-+-+.+.|+.|-.    ..-|.|-+  .+.
T Consensus       396 dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy  473 (549)
T PF07079_consen  396 DEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY  473 (549)
T ss_pred             cHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence            5666777766665  2333333222222    122221   1222233333334556766532    23344433  334


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCCC
Q 010320          450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS  513 (513)
Q Consensus       450 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~S  513 (513)
                      ..|++.++...-.-+.+  +.|++.+|..+.-+.....++++|..++.++     +|+..+++|
T Consensus       474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds  530 (549)
T PF07079_consen  474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS  530 (549)
T ss_pred             hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence            68888887765444443  6799999999999999999999999999863     456555543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.64  E-value=0.003  Score=62.68  Aligned_cols=64  Identities=13%  Similarity=-0.014  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      +...|..+.-.....|++++|...+++....  .|+...|..+...+...|+.++|.+.+++..+.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3455555555555566777777777776663  356666666777777777777777777666554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.63  E-value=0.0013  Score=48.47  Aligned_cols=93  Identities=13%  Similarity=0.115  Sum_probs=48.5

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010320          160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL  239 (513)
Q Consensus       160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~  239 (513)
                      ..+...+...|++++|.+++++..+....+...+..+...+...|++++|.+.|+.....  .+.+..++..+...+...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHHH
Confidence            344444555555555555555555543334445555555555555555555555555432  122334555555555555


Q ss_pred             CChhHHHHHHHHHHH
Q 010320          240 LLVDHMEAAFQEIKD  254 (513)
Q Consensus       240 g~~~~A~~~~~~m~~  254 (513)
                      |+++.|...+++..+
T Consensus        82 ~~~~~a~~~~~~~~~   96 (100)
T cd00189          82 GKYEEALEAYEKALE   96 (100)
T ss_pred             HhHHHHHHHHHHHHc
Confidence            555555555555443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.63  E-value=0.0012  Score=60.37  Aligned_cols=132  Identities=12%  Similarity=0.035  Sum_probs=84.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH----hcCCc-ccHhhHHH
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFE----HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE----SAGWR-LCRSLYHS  443 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~-p~~~~~~~  443 (513)
                      |...|.-.|+++.|+...+.-++    -|.....-..+..+.+++.-.|+++.|.+.|+...    +.|-+ ......-+
T Consensus       201 LGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYS  280 (639)
T KOG1130|consen  201 LGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYS  280 (639)
T ss_pred             cCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            45555566788888866543222    23333334457778888888999999999888643    23321 12333445


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010320          444 KMVMYASQRRVEEMESVLKEMEN----Y-KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       444 li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  504 (513)
                      |...|.-..+++.|+.++.+-..    . +..-....|++|..+|...|..++|+.+.+.-.+...
T Consensus       281 LgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~  346 (639)
T KOG1130|consen  281 LGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL  346 (639)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            66677777778888887754322    1 1223457888999999999999999888776554433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.63  E-value=0.0017  Score=59.37  Aligned_cols=128  Identities=10%  Similarity=0.123  Sum_probs=79.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  451 (513)
                      .++...-+.+..+.|..+|++..+.+.......+..+++. |...++.+.|.++|+...+. +.-+...|...++.+.+.
T Consensus         6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHh
Confidence            4566666666777777788777654433333332233332 33356666688888876543 334566677777777788


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          452 RRVEEMESVLKEMENYKIDCSK---KTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      |+.+.|..+|++.... +.++.   ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus        84 ~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   84 NDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             T-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8888888888877754 33222   47777777777888888887777777653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.62  E-value=0.0027  Score=49.55  Aligned_cols=95  Identities=12%  Similarity=-0.073  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHH
Q 010320          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--PNVFTYN  265 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~  265 (513)
                      ++..+...+.+.|++++|.+.|+.+...   .|+    ...+..+..++.+.|+++.|...|+++......  ....++.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKK---YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            3444445555555555555555555543   121    223444555555555555555555555443211  0123344


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHc
Q 010320          266 YLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       266 ~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      .+..++.+.|++++|.+.++++.+
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHH
Confidence            444445555555555555555544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.60  E-value=0.00018  Score=52.20  Aligned_cols=82  Identities=10%  Similarity=0.073  Sum_probs=34.9

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHH
Q 010320          380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES  459 (513)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  459 (513)
                      .|+++.|+.+++++.+.....++...+..+..+|.+.|++++|.++++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence            3455555555555555332111222333345555555555555555554 111111 11222233444555555555555


Q ss_pred             HHHH
Q 010320          460 VLKE  463 (513)
Q Consensus       460 ~~~~  463 (513)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.60  E-value=0.11  Score=52.95  Aligned_cols=198  Identities=13%  Similarity=0.038  Sum_probs=134.5

Q ss_pred             HHHHHHHH----cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010320          123 FVELMKQL----GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       123 ~~~~l~~~----~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      |..+++++    .+++++|..+++.....+.    -|..+...+-..|...++.++|..+|++.....+ +......+..
T Consensus        44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~----~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P-~eell~~lFm  118 (932)
T KOG2053|consen   44 YAKVLKALSLFRLGKGDEALKLLEALYGLKG----TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP-SEELLYHLFM  118 (932)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHhhhccCCC----CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC-cHHHHHHHHH
Confidence            55555555    6788899888887655432    2899999999999999999999999999988654 4777777888


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHHHCC-CCCCHHHHHHH
Q 010320          199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL----------LVDHMEAAFQEIKDSN-LSPNVFTYNYL  267 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g-~~p~~~~~~~l  267 (513)
                      +|++.+.+.+-.++=-+|-+.  .+-+...+=++++.....-          -+.-|.+.++.+.+.+ -.-+..-.-.-
T Consensus       119 ayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly  196 (932)
T KOG2053|consen  119 AYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY  196 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence            899998887766666666653  3344555555555554331          1345777788877654 21122222222


Q ss_pred             HHHHHHccCHHHHHHHHH-HHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 010320          268 IAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD  327 (513)
Q Consensus       268 i~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  327 (513)
                      ...+-..|.+++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++...|.
T Consensus       197 l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  197 LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence            334456788999999983 444433333455555667778888888888888888887754

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.59  E-value=0.0069  Score=55.56  Aligned_cols=199  Identities=12%  Similarity=0.091  Sum_probs=111.1

Q ss_pred             HHHHHccCHHHHHHHHHHHHc----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010320          269 AGYMTAWMWGKVEEIYQMMKA----GPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK  343 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (513)
                      ..|-..|++++|.+.|.+...    .+-..+ ...|......|.+. ++++|.+.++               ..+..|..
T Consensus        43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~---------------~A~~~y~~  106 (282)
T PF14938_consen   43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYE---------------KAIEIYRE  106 (282)
T ss_dssp             HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHH---------------HHHHHHHH
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHH---------------HHHHHHHh
Confidence            456666777777777766533    111101 22333333333222 5555555544               44456778


Q ss_pred             cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhc-CCHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHhcCc
Q 010320          344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE-DCLEEMEKSINDAFE----HKTSVTTVRIMRCIVSSYFRCNA  418 (513)
Q Consensus       344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~  418 (513)
                      .|++..+-++..                -+...|-.. |++++|++.|++..+    .+....-..++..+...+.+.|+
T Consensus       107 ~G~~~~aA~~~~----------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~  170 (282)
T PF14938_consen  107 AGRFSQAAKCLK----------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR  170 (282)
T ss_dssp             CT-HHHHHHHHH----------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred             cCcHHHHHHHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence            887776655543                356667676 788888888877554    22222224456778888999999


Q ss_pred             HHHHHHHHHHHHhcCC-----cccHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhc--
Q 010320          419 VDKLANFVKRAESAGW-----RLCRS-LYHSKMVMYASQRRVEEMESVLKEMENYK--IDCS--KKTFWIMYYAYATC--  486 (513)
Q Consensus       419 ~~~a~~~~~~~~~~~~-----~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~--~~~~~~li~~~~~~--  486 (513)
                      +++|.++|++......     +.+.. .|-..+-++...|++-.|.+.|++.....  +..+  ......|+.+|-..  
T Consensus       171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~  250 (282)
T PF14938_consen  171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV  250 (282)
T ss_dssp             HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence            9999999998765432     22222 23333445666899999999999988653  3222  34455667776542  


Q ss_pred             CCHhHHHHHHHHH
Q 010320          487 GQRRKVNQVLGLM  499 (513)
Q Consensus       487 g~~~~A~~~~~~m  499 (513)
                      ..++.|+.-|+.+
T Consensus       251 e~f~~av~~~d~~  263 (282)
T PF14938_consen  251 EAFTEAVAEYDSI  263 (282)
T ss_dssp             CCHHHHCHHHTTS
T ss_pred             HHHHHHHHHHccc
Confidence            2345555544443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.56  E-value=0.00029  Score=51.12  Aligned_cols=81  Identities=9%  Similarity=0.076  Sum_probs=60.9

Q ss_pred             cCcHHHHHHHHHHHHhcCCc-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010320          416 CNAVDKLANFVKRAESAGWR-LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ  494 (513)
Q Consensus       416 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  494 (513)
                      .|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+ ..+......+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            57899999999999876542 3455566688999999999999999988 3322 1233555566899999999999999


Q ss_pred             HHHH
Q 010320          495 VLGL  498 (513)
Q Consensus       495 ~~~~  498 (513)
                      ++++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9876

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.54  E-value=0.0048  Score=49.59  Aligned_cols=91  Identities=7%  Similarity=-0.154  Sum_probs=72.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  452 (513)
                      +..-+...|++++|..+|+-...  ..|.+..-|..|.-+|-..|++++|++.|.......+ -|+..+-.+-.++...|
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence            66667788999999999988777  4455566677888888888999999999998877664 36677777888888999


Q ss_pred             CHHHHHHHHHHHHh
Q 010320          453 RVEEMESVLKEMEN  466 (513)
Q Consensus       453 ~~~~A~~~~~~m~~  466 (513)
                      +.+.|.+.|+....
T Consensus       118 ~~~~A~~aF~~Ai~  131 (157)
T PRK15363        118 NVCYAIKALKAVVR  131 (157)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999988887664

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.51  E-value=0.0039  Score=52.44  Aligned_cols=84  Identities=13%  Similarity=0.052  Sum_probs=48.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  450 (513)
                      .+...+...|++++|...|++.+.....++ ....+..+...+.+.|++++|...+++..+.... +...+..+...|..
T Consensus        40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~  118 (172)
T PRK02603         40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIYHK  118 (172)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence            455566666777777777777665433222 2345666666677777777777777766654321 34445555555655


Q ss_pred             cCCHHH
Q 010320          451 QRRVEE  456 (513)
Q Consensus       451 ~g~~~~  456 (513)
                      .|+...
T Consensus       119 ~g~~~~  124 (172)
T PRK02603        119 RGEKAE  124 (172)
T ss_pred             cCChHh
Confidence            555433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.50  E-value=0.00043  Score=47.86  Aligned_cols=62  Identities=23%  Similarity=0.343  Sum_probs=38.6

Q ss_pred             ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320          168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      +.|++++|.++|+.+....+.+...+..+..+|.+.|++++|.++++.+...   .|+...|..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l   64 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL   64 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence            4566677777777766665556666666777777777777777777766654   4554444433

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.44  E-value=0.005  Score=58.40  Aligned_cols=100  Identities=16%  Similarity=0.037  Sum_probs=73.6

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010320          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ..+...|++++|++.|++..+..+.+...|..+..+|.+.|++++|+..+++....  -+.+...|..+..+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence            44556788888888888888776667778888888888888888888888888753  2335667777888888888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHH
Q 010320          244 HMEAAFQEIKDSNLSPNVFTYNYL  267 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~l  267 (513)
                      +|+..|++..+.+  |+......+
T Consensus        88 eA~~~~~~al~l~--P~~~~~~~~  109 (356)
T PLN03088         88 TAKAALEKGASLA--PGDSRFTKL  109 (356)
T ss_pred             HHHHHHHHHHHhC--CCCHHHHHH
Confidence            8888888887643  444333333

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.43  E-value=0.018  Score=48.40  Aligned_cols=89  Identities=9%  Similarity=-0.049  Sum_probs=49.6

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-S-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY  266 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  266 (513)
                      ....|..+...+...|++++|...|++..+. .-.+ + ...+..+...+.+.|++++|...+++..+... -+...+..
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~  111 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNN  111 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHH
Confidence            3445566666666666777777666666543 1111 1 24556666666666666666666666665422 13444555


Q ss_pred             HHHHHHHccCHHH
Q 010320          267 LIAGYMTAWMWGK  279 (513)
Q Consensus       267 li~~~~~~g~~~~  279 (513)
                      +...+...|+...
T Consensus       112 lg~~~~~~g~~~~  124 (172)
T PRK02603        112 IAVIYHKRGEKAE  124 (172)
T ss_pred             HHHHHHHcCChHh
Confidence            5555555555433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.39  E-value=0.0063  Score=57.75  Aligned_cols=104  Identities=8%  Similarity=-0.033  Sum_probs=83.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010320          197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                      ...+...|++++|++.|++..+.  -+-+...|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|+
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence            45567889999999999999874  245677888889999999999999999999988653 367788888999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010320          277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRG  305 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  305 (513)
                      +++|+..|++..+  +.|+......++..
T Consensus        86 ~~eA~~~~~~al~--l~P~~~~~~~~l~~  112 (356)
T PLN03088         86 YQTAKAALEKGAS--LAPGDSRFTKLIKE  112 (356)
T ss_pred             HHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            9999999999987  44665444444433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.34  E-value=0.0011  Score=45.28  Aligned_cols=57  Identities=12%  Similarity=0.077  Sum_probs=37.8

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010320          163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      ...+.+.|++++|.+.|+++.+..+.+...|..+..++...|++++|...|+++.+.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345566677777777777777666556667777777777777777777777766643

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.34  E-value=0.039  Score=50.62  Aligned_cols=114  Identities=17%  Similarity=0.241  Sum_probs=74.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHh----cCCc-ccHhhHHHHHH
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAES----AGWR-LCRSLYHSKMV  446 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~----~~~~-p~~~~~~~li~  446 (513)
                      .+..|...|++..|-+.                +..+...|... |+++.|++.|++..+    .+.. --...+..+..
T Consensus       100 A~~~y~~~G~~~~aA~~----------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~  163 (282)
T PF14938_consen  100 AIEIYREAGRFSQAAKC----------------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD  163 (282)
T ss_dssp             HHHHHHHCT-HHHHHHH----------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence            55666666666665544                44455567777 899999999987643    2311 12345677788


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          447 MYASQRRVEEMESVLKEMENYKID-----CSKK-TFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       447 ~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+.+.|++++|.++|++....-..     .+.. .|-..+-++...|++..|.+.+++....
T Consensus       164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            899999999999999998765322     2222 3334555777889999999999988754

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.32  E-value=0.0079  Score=50.40  Aligned_cols=95  Identities=5%  Similarity=-0.192  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc--cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010320          403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL--CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY  480 (513)
Q Consensus       403 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li  480 (513)
                      ...|..+...+...|++++|...+++.......+  ...+|..+...|...|++++|+..++...... +....++..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            4456666667777788888888888776543222  23466777777888888888888888777643 33345555555


Q ss_pred             HHHH-------hcCCHhHHHHHHHH
Q 010320          481 YAYA-------TCGQRRKVNQVLGL  498 (513)
Q Consensus       481 ~~~~-------~~g~~~~A~~~~~~  498 (513)
                      ..+.       ..|+++.|...+++
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHH
Confidence            5665       77777766555554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.30  E-value=0.0076  Score=50.47  Aligned_cols=65  Identities=5%  Similarity=-0.201  Sum_probs=32.3

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      ...|..+...+...|++++|+..|++......-.+ ...+|..+...+...|++++|+..+++...
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44455555555555666666666655543210000 113455555555555555555555555554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.21  E-value=0.014  Score=47.06  Aligned_cols=96  Identities=8%  Similarity=0.009  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA  484 (513)
Q Consensus       405 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  484 (513)
                      ..-.+...+...|++++|..+|+-+...... +..-|-.|-.++-..|++++|+..|......+ +-|+..+-.+..++.
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L  114 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence            3445666778899999999999988766533 55667778888889999999999999999887 468889999999999


Q ss_pred             hcCCHhHHHHHHHHHHHC
Q 010320          485 TCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       485 ~~g~~~~A~~~~~~m~~~  502 (513)
                      ..|+.+.|.+.|+..+..
T Consensus       115 ~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            999999999999977544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.20  E-value=0.15  Score=45.46  Aligned_cols=177  Identities=14%  Similarity=0.057  Sum_probs=99.1

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHH---HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTY---NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .....+.+.|++++|.+.|+.+....+.+....   -.+..++.+.+++++|...|++..+...-.|+. -|...+.+.+
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~  115 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLT  115 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHh
Confidence            344445678999999999999988655444333   455677888999999999999988764333333 3333333332


Q ss_pred             h--cC---------------C---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHH
Q 010320          238 R--LL---------------L---VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN  297 (513)
Q Consensus       238 ~--~g---------------~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  297 (513)
                      .  .+               |   ...|...|+++++.  -|+             ..-..+|...+..+...   .- .
T Consensus       116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~---la-~  176 (243)
T PRK10866        116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR---LA-K  176 (243)
T ss_pred             hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH---HH-H
Confidence            1  11               1   12344445555443  122             22234444333333220   00 0


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320          298 TYLLLLRGYAHSGNLPRMEKIYELVKHH--VDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      .--.+.+-|.+.|++..|..-++.+.+.  +.+........++.+|.+.|..+.+..+..++
T Consensus       177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            1124555677778887787777777764  22223334455666677777666666655544

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.13  E-value=0.22  Score=46.21  Aligned_cols=102  Identities=16%  Similarity=0.112  Sum_probs=66.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  452 (513)
                      .+.-+...|+...|.++-++     ..+++...|-..+.+++..++|++-.++-..    .  -++.-|..++.+|.+.|
T Consensus       183 Ti~~li~~~~~k~A~kl~k~-----Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~  251 (319)
T PF04840_consen  183 TIRKLIEMGQEKQAEKLKKE-----FKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYG  251 (319)
T ss_pred             HHHHHHHCCCHHHHHHHHHH-----cCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCC
Confidence            45556667777777766544     3455666677778888888888776665432    1  13466777788888888


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 010320          453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV  495 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  495 (513)
                      +..+|..+...+.          +..-+..|.+.|++.+|.+.
T Consensus       252 ~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  252 NKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             CHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence            8888777776621          24456666777777776554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.09  E-value=0.061  Score=53.56  Aligned_cols=57  Identities=7%  Similarity=-0.102  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010320          297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA  355 (513)
Q Consensus       297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  355 (513)
                      ..|..+.-.+...|++++|...+++..+..  |+...|..+...+...|+.++|.+.++
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~  477 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYS  477 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344444333334455555555555544432  234444444555555554444444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.033  Score=49.64  Aligned_cols=127  Identities=12%  Similarity=0.085  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHH
Q 010320          173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL---LLVDHMEAAF  249 (513)
Q Consensus       173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~  249 (513)
                      +....-++.-...++.|...|-.|...|...|+.+.|..-|....+-.|  +|...+..+..++...   .+-.++..+|
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            3334444444455555888999999999999999999999988886533  4455555554444332   3456788888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010320          250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR  304 (513)
Q Consensus       250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  304 (513)
                      +++..... -|+.+-..|-..+...|++.+|...|+.|.+..  |....+..+|.
T Consensus       217 ~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         217 RQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             HHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            88887543 366667777778888888888888888888743  43334444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.02  E-value=0.22  Score=44.35  Aligned_cols=56  Identities=13%  Similarity=0.142  Sum_probs=34.4

Q ss_pred             HHHHHHccCHHHHHHHHHHHHcCCCCCCH-HH---HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320          268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDT-NT---YLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      ...+.+.|++++|.+.|+++...-  |+. ..   .-.+..++.+.+++++|...+++..+.
T Consensus        39 A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         39 AQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            334455677777777777776632  332 11   234556667777777777777777664

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.00  E-value=0.0044  Score=42.23  Aligned_cols=55  Identities=5%  Similarity=0.002  Sum_probs=33.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       446 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      ..+.+.|++++|...|++..+.. +-+...+..+..++...|++++|..+|+++.+
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44556666666666666666554 33555666666666666666666666666653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.98  E-value=0.042  Score=53.74  Aligned_cols=262  Identities=11%  Similarity=0.064  Sum_probs=142.3

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHcCC
Q 010320          223 SPSIVTYNTLISVFGRLLLVDHMEAA---------FQEIKDSNLSPNVFTYNYLIAGYMTAWMW--GKVEEIYQMMKAGP  291 (513)
Q Consensus       223 ~p~~~~~~~li~~~~~~g~~~~A~~~---------~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g  291 (513)
                      .|..+.+.+=+-.|...|.+++|.++         ++.+-..  ..+...+++.=.+|.+..+.  -+.+.-+++|+++|
T Consensus       553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg  630 (1081)
T KOG1538|consen  553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG  630 (1081)
T ss_pred             ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence            44445556666667777777776543         2222211  12344456666677765543  34555567788888


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC----CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc
Q 010320          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD----GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP  367 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  367 (513)
                      -.|+...   +...|+-.|++.+|-++|.+--...-    -.|...+ .+..-|.+.|..+.-....+.-.+....--.|
T Consensus       631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP  706 (1081)
T KOG1538|consen  631 ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGDPKEKKMLIRKRADWARNIKEP  706 (1081)
T ss_pred             CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc
Confidence            8788643   44556777888888888865322110    0111111 12233444443332222211111100011111


Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHH-----H-H--hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh
Q 010320          368 WLNVLLIRVYAKEDCLEEMEKSIND-----A-F--EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS  439 (513)
Q Consensus       368 ~~~~~li~~~~~~~~~~~a~~~~~~-----~-~--~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  439 (513)
                      .   +....+...|+.++|..+.-+     | .  .+.....+..+...+..-+-+...+..|-++|..|-+.       
T Consensus       707 k---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------  776 (1081)
T KOG1538|consen  707 K---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------  776 (1081)
T ss_pred             H---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence            1   234444555666666654321     1 0  11122333344444555555566677788888876432       


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010320          440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK-----------KTFWIMYYAYATCGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  504 (513)
                        ..+++.....++|.+|..+-+...+.  .||.           .-|.-.=.+|.++|+..+|.++++++....+
T Consensus       777 --ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav  848 (1081)
T KOG1538|consen  777 --KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV  848 (1081)
T ss_pred             --HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence              35677888899999999998876652  2332           1244455789999999999999998866544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.97  E-value=0.0043  Score=42.86  Aligned_cols=62  Identities=18%  Similarity=0.106  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLK  217 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~  217 (513)
                      ...|..+...+...|++++|+..|++..+..+.+...|..+..+|...| ++++|++.|++..
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            3445555555555555555555555555554445555555555555555 4555555555544

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.96  E-value=0.005  Score=42.40  Aligned_cols=63  Identities=14%  Similarity=0.137  Sum_probs=37.3

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010320          201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL  267 (513)
Q Consensus       201 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  267 (513)
                      ...|++++|+++|+++...  .+-|...+..+..+|.+.|++++|..+++++...  .|+...|..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l   64 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL   64 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence            3556677777777776654  2335556666667777777777777777766654  2444444433

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.94  E-value=0.025  Score=50.82  Aligned_cols=96  Identities=15%  Similarity=0.098  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHH
Q 010320          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTY  229 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~  229 (513)
                      ..|...+..+.+.|++++|...|+.+.+..+.+   ...+-.+...|...|++++|...|+.+.+.+   |+    ...+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~~dAl  220 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcchhHHH
Confidence            344444444455566666666666666654432   3455566666666666666666666666431   22    2333


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHC
Q 010320          230 NTLISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       230 ~~li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      -.+...+...|+.+.|..+|+++.+.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34445555666666666666666553

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.25  Score=43.14  Aligned_cols=59  Identities=14%  Similarity=0.062  Sum_probs=29.5

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320          160 TKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      +.++..+...|.+.-...++.+..++..+ ++..-..|++.-.+.|+.+.|...|+...+
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek  240 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK  240 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            34444444445555555555555554433 444555555555555555555555554443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.90  E-value=0.02  Score=50.73  Aligned_cols=100  Identities=14%  Similarity=0.086  Sum_probs=71.4

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH
Q 010320          377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE  456 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  456 (513)
                      +.+.+++++|+..|.+.++  ..|.+...|..-..+|++.|.++.|.+=-+........ ...+|..|-.+|...|++++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence            4566788888888888777  55666666777778888888888887777766654422 35667888888888888888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          457 MESVLKEMENYKIDCSKKTFWIMYY  481 (513)
Q Consensus       457 A~~~~~~m~~~~~~p~~~~~~~li~  481 (513)
                      |++.|++..+  +.|+-.+|..=+.
T Consensus       168 A~~aykKaLe--ldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  168 AIEAYKKALE--LDPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHhhhc--cCCCcHHHHHHHH
Confidence            8888887776  4466666654443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.90  E-value=0.017  Score=53.22  Aligned_cols=265  Identities=10%  Similarity=-0.028  Sum_probs=137.0

Q ss_pred             hcccCCHHHHHHHHHHHHhccCCCH----hHHHHHHHHHHHcCChHHHHHHHHHH--HH-hCCCCC-CHHHHHHHHHHHH
Q 010320          166 AGRINNVDLAADLFAEAANKHLKTI----GTYNALLGAYMYNGLSDKCQSLFRDL--KK-EANISP-SIVTYNTLISVFG  237 (513)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m--~~-~~g~~p-~~~~~~~li~~~~  237 (513)
                      +++.|+....+.+|+...+-|-.|.    .+|..|..+|.-.+++++|+++...=  .. ..|-+. ...+...|.+.+-
T Consensus        27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK  106 (639)
T KOG1130|consen   27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK  106 (639)
T ss_pred             HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence            5677777777777777777665432    34666666777777777777654310  00 001000 1112222333333


Q ss_pred             hcCChhHHHHHHHHH----HHCCC-CCCHHHHHHHHHHHHHccC--------------------HHHHHHHHHHH----H
Q 010320          238 RLLLVDHMEAAFQEI----KDSNL-SPNVFTYNYLIAGYMTAWM--------------------WGKVEEIYQMM----K  288 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m----~~~g~-~p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m----~  288 (513)
                      -.|.+++|...-.+-    .+.|- ......+-.+...|...|+                    ++.|.++|.+=    .
T Consensus       107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~  186 (639)
T KOG1130|consen  107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE  186 (639)
T ss_pred             hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444443221110    01110 0012223334444443332                    23344444331    1


Q ss_pred             cCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hccCCC-cHHHHHHHHHHHHhcCChhHHHHHHH----HHH
Q 010320          289 AGPVM-PDTNTYLLLLRGYAHSGNLPRMEKIYELVK----HHVDGK-EFPLIRAMICAYSKCSVTDRIKKIEA----LMR  358 (513)
Q Consensus       289 ~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~----~~~  358 (513)
                      ..|-. .-...|..|-+.|.-.|+++.|+...+.-.    +.|-.. ....+..+.+++.-.|+++.|.+-++    +..
T Consensus       187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi  266 (639)
T KOG1130|consen  187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI  266 (639)
T ss_pred             HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence            11111 123456666667777788888887776532    222211 23456677777888888877766543    334


Q ss_pred             hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010320          359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE----HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE  430 (513)
Q Consensus       359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  430 (513)
                      ++..+.+.....-.|...|.-...+++|+.++.+-+.    .+...-....+-+|..+|...|..++|+.+.+.-.
T Consensus       267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4444443332211477777777888888887765332    11222234456678888888888888888777544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.89  E-value=0.0055  Score=42.34  Aligned_cols=62  Identities=13%  Similarity=0.137  Sum_probs=34.9

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHH
Q 010320          439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG-QRRKVNQVLGLMCK  501 (513)
Q Consensus       439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~  501 (513)
                      ..|..+...+...|++++|+..|++..+.+ +-+...|..+..+|...| ++++|++.+++..+
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            345555555556666666666666655544 334555555556666666 46666666655543

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.84  E-value=0.037  Score=43.31  Aligned_cols=82  Identities=16%  Similarity=0.096  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC----------------CCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHL----------------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      |..++..+|-++++.|+++....+++..-.-++                |+..+..+++.+|+..|++..|+++.+...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            456777788888888888888777765421110                2344555555555555555555555555555


Q ss_pred             hCCCCCCHHHHHHHHHHH
Q 010320          219 EANISPSIVTYNTLISVF  236 (513)
Q Consensus       219 ~~g~~p~~~~~~~li~~~  236 (513)
                      .++++-+..+|..|+.-+
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             HcCCCCCHHHHHHHHHHH
Confidence            555555555555555443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.65  Score=46.73  Aligned_cols=326  Identities=9%  Similarity=0.023  Sum_probs=185.5

Q ss_pred             cCCCCCCCCHHHHHHH-----HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 010320          147 QAGYGTPMTKEEYTKG-----IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN  221 (513)
Q Consensus       147 ~~~~g~~~~~~~~~~l-----l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g  221 (513)
                      ....|++.+..-|..+     +.-+...+.+..|.++-..+......+..+|.....-+.+..+. .-.++++.+.++.+
T Consensus       423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls  501 (829)
T KOG2280|consen  423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDK-MDEEVLDKIDEKLS  501 (829)
T ss_pred             ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCc-cchHHHHHHHHHhc
Confidence            3458899999988755     66677889999999998887553222356677777777766432 11233333333322


Q ss_pred             C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC-----
Q 010320          222 I-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL----SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP-----  291 (513)
Q Consensus       222 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----  291 (513)
                      . --...+|..+..-.-..|+.+.|..+++.=...+-    -.+..-+...+.-+.+.|+.+-...++-.|.++-     
T Consensus       502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l  581 (829)
T KOG2280|consen  502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL  581 (829)
T ss_pred             ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence            2 12345777777777789999999988765332211    0122335556666777888887777776665421     


Q ss_pred             -----CCCC-HHHHHHHHH--------HHHhcCChHHHHHHHH--HHH----hccCCCcHHHHHHHHHHHHhcCChhHH-
Q 010320          292 -----VMPD-TNTYLLLLR--------GYAHSGNLPRMEKIYE--LVK----HHVDGKEFPLIRAMICAYSKCSVTDRI-  350 (513)
Q Consensus       292 -----~~p~-~~t~~~ll~--------~~~~~g~~~~a~~~~~--~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a-  350 (513)
                           ..|. ...|.-+++        .+.+.++-.++...|.  ...    ..+..|+..   ...+.+.+....... 
T Consensus       582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~  658 (829)
T KOG2280|consen  582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEA  658 (829)
T ss_pred             HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHH
Confidence                 0111 122222221        1111222222221111  100    012223222   233334433321111 


Q ss_pred             ------HHHHHHHHhCCCC-C--cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHH
Q 010320          351 ------KKIEALMRLIPEK-E--YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK  421 (513)
Q Consensus       351 ------~~~~~~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  421 (513)
                            .+.+++.+..... +  .....-.--+.-+...|+..+|.++-.+     ...++...|--=+.+++..+++++
T Consensus       659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~-----FkipdKr~~wLk~~aLa~~~kwee  733 (829)
T KOG2280|consen  659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSD-----FKIPDKRLWWLKLTALADIKKWEE  733 (829)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHh-----cCCcchhhHHHHHHHHHhhhhHHH
Confidence                  1112222222211 1  1111111246667778999999887655     445566777777889999999998


Q ss_pred             HHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010320          422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL  496 (513)
Q Consensus       422 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  496 (513)
                      -+++-+.++      .+.-|..++.+|.+.|+.++|.+++.+...         +.-...+|.+.|++.+|.++-
T Consensus       734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence            777766543      245677889999999999999999877542         115678888889888887653

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.83  E-value=0.0098  Score=51.95  Aligned_cols=115  Identities=12%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             CHhHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010320          189 TIGTYNALLGAYMYN-----GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT  263 (513)
Q Consensus       189 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  263 (513)
                      |-.+|-+.+..+...     +.++-.-..++.|.+ +|+..|..+|+.||+.+-+..                ..|... 
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgk----------------fiP~nv-  127 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGK----------------FIPQNV-  127 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccc----------------cccHHH-
Confidence            666777777766543     445555556666765 577777777777777654322                112211 


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 010320          264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL-PRMEKIYELVK  323 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~  323 (513)
                      +....--|-+  +-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.-.|-
T Consensus       128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence            1111111222  2345788999999999999999999999999887753 23344444443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.82  E-value=0.018  Score=46.88  Aligned_cols=69  Identities=13%  Similarity=0.122  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----HCCCCCCCC
Q 010320          440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC-----KNGYDVPVN  509 (513)
Q Consensus       440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~  509 (513)
                      ....++..+...|++++|..+.+.+...+ +-|...|..+|.+|...|+...|.++|+++.     +.|+.|+..
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~  137 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE  137 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence            35566777788999999999999998877 6788899999999999999999999988763     458888753

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.82  E-value=0.092  Score=40.67  Aligned_cols=103  Identities=16%  Similarity=0.041  Sum_probs=58.1

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 010320          163 IKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISV  235 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~  235 (513)
                      -.++-..|+.++|+.+|++....|..+   ...+-.+...+...|++++|+.+|++...+   .|+    ......+..+
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHHH
Confidence            344556677777777777777766542   334445556666677777777777776654   233    1122223345


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010320          236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM  272 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  272 (513)
                      +...|+.++|++.+-....    ++...|.--|..|.
T Consensus        85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            5666777777766655443    33334544444443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.31  Score=42.58  Aligned_cols=133  Identities=7%  Similarity=-0.052  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 010320          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA-  269 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-  269 (513)
                      .+.+.++..+.-.|.+.-....+++..+. .-+.+......|++.-.+.||.+.|...|++..+..-+.|..+++.++. 
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence            35566666666677777777777777764 3355666667777777777888888888876665433344444444432 


Q ss_pred             ----HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320          270 ----GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       270 ----~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                          .|.-.+++..|...|.+.....- -|....|.-.-+..-.|+..+|.+.++.|+..
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                34445667777777776665431 23444444333344456777777777777765

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.80  E-value=0.65  Score=46.31  Aligned_cols=52  Identities=6%  Similarity=-0.046  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHhHH
Q 010320          441 YHSKMVMYASQRRVEEMESVLKEMEN-YKIDCSKKTFWIMYYAYATCGQRRKV  492 (513)
Q Consensus       441 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A  492 (513)
                      |..|..--...|.++.|.+.--.+.+ .++-|....|..|.-+.+....+...
T Consensus      1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtC 1076 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTC 1076 (1189)
T ss_pred             HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhh
Confidence            33444444567888888876554443 24667788888777665555444333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.77  E-value=0.55  Score=46.80  Aligned_cols=241  Identities=11%  Similarity=0.067  Sum_probs=136.7

Q ss_pred             CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010320          188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--------IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP  259 (513)
Q Consensus       188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  259 (513)
                      |.+..|..|.......-.++-|...|-+...-.|++.-        ...-.+=|.+  --|.+++|++++-+|-.+.   
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD---  764 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD---  764 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh---
Confidence            45678888877766666677777766554432222111        0111111222  2478888888887776542   


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHH
Q 010320          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV--MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM  337 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  337 (513)
                            ..|..+.+.|++-.+.++++.=-. +.  +--...|+.+...++....+++|.++|......         ...
T Consensus       765 ------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~  828 (1189)
T KOG2041|consen  765 ------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ  828 (1189)
T ss_pred             ------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence                  246667778888877777654211 11  111457788888888888888888887654321         234


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q 010320          338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN  417 (513)
Q Consensus       338 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  417 (513)
                      +.+|.+..++++.+   ...+.++++...--   .|..++...|..++|.+.|-+-     ..|     .+.+..|...+
T Consensus       829 ~ecly~le~f~~LE---~la~~Lpe~s~llp---~~a~mf~svGMC~qAV~a~Lr~-----s~p-----kaAv~tCv~Ln  892 (1189)
T KOG2041|consen  829 IECLYRLELFGELE---VLARTLPEDSELLP---VMADMFTSVGMCDQAVEAYLRR-----SLP-----KAAVHTCVELN  892 (1189)
T ss_pred             HHHHHHHHhhhhHH---HHHHhcCcccchHH---HHHHHHHhhchHHHHHHHHHhc-----cCc-----HHHHHHHHHHH
Confidence            55666555554333   23334444332222   4778888888888888766331     111     13466777888


Q ss_pred             cHHHHHHHHHHHHhcCCc-----------ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          418 AVDKLANFVKRAESAGWR-----------LCRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       418 ~~~~a~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      ++.+|.++-++..-..+.           -+.. ..--|..+-+.|+.-+|.+++.+|.+
T Consensus       893 QW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  893 QWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhH
Confidence            888877776643211110           0001 11124556677777777777777754

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.73  E-value=0.011  Score=48.15  Aligned_cols=71  Identities=17%  Similarity=0.164  Sum_probs=40.8

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCCCCHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK----EANISPSIVT  228 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~g~~p~~~~  228 (513)
                      +...++..+...|++++|..+.+.+....+-+...|..+|.+|...|+..+|++.|+++.+    +.|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            3445555666677777777777777666555666777777777777777777777766532    2366666544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.73  E-value=0.025  Score=50.19  Aligned_cols=102  Identities=14%  Similarity=0.115  Sum_probs=70.1

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH
Q 010320          199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG  278 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  278 (513)
                      -+.+.+++++|+..|.+..+-  .+-|.+-|..-..+|++.|.++.|++-.+..+.... --..+|..|-.+|...|+++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHH
Confidence            356677788888888877752  234556666677778888888887777776665322 13467777778888888888


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010320          279 KVEEIYQMMKAGPVMPDTNTYLLLLRG  305 (513)
Q Consensus       279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~  305 (513)
                      +|++.|++.++  +.|+-.+|-.=++.
T Consensus       167 ~A~~aykKaLe--ldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  167 EAIEAYKKALE--LDPDNESYKSNLKI  191 (304)
T ss_pred             HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence            88888877776  66776666554443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.72  E-value=0.049  Score=42.17  Aligned_cols=108  Identities=16%  Similarity=-0.025  Sum_probs=72.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc--ccHhhHHHHHHHHH
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR--LCRSLYHSKMVMYA  449 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~  449 (513)
                      +..++-..|+.++|+.+|++.+..|...+ ....+-.+...+...|++++|..+++........  .+......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            56677788999999999998888765443 2345666778888889999999999887654321  01122222344667


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA  484 (513)
Q Consensus       450 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  484 (513)
                      ..|+.++|+..+-.....    +...|.--|..|.
T Consensus        87 ~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya  117 (120)
T PF12688_consen   87 NLGRPKEALEWLLEALAE----TLPRYRRAIRFYA  117 (120)
T ss_pred             HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            888999988888766542    3335555555554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.69  E-value=0.52  Score=43.66  Aligned_cols=281  Identities=11%  Similarity=0.047  Sum_probs=170.4

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhc--ccCCHHHHHHHHHHHHhccCCCHhH----HHHHHHHHHH
Q 010320          129 QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG--RINNVDLAADLFAEAANKHLKTIGT----YNALLGAYMY  202 (513)
Q Consensus       129 ~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~----~~~li~~~~~  202 (513)
                      +-+++...|..+-..-.+.    +.-|....-.++.+-.  -.|+.+.|.+-|+.|..    ++++    ...|.-.--+
T Consensus        95 agAGda~lARkmt~~~~~l----lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr  166 (531)
T COG3898          95 AGAGDASLARKMTARASKL----LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQR  166 (531)
T ss_pred             hccCchHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHh
Confidence            3356777776655544322    3446666666666543  46889999999998876    3333    2333333456


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHH---cc
Q 010320          203 NGLSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVF--TYNYLIAGYMT---AW  275 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~li~~~~~---~g  275 (513)
                      .|..+.|...-+..-..   .|. ...+...+...|..|+|+.|+++++.-++.. +.++..  .-..|+.+-..   .-
T Consensus       167 ~GareaAr~yAe~Aa~~---Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda  243 (531)
T COG3898         167 LGAREAARHYAERAAEK---APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA  243 (531)
T ss_pred             cccHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence            78888888888777643   344 3577888888999999999999988776532 344432  22333333221   22


Q ss_pred             CHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh--hHHHH
Q 010320          276 MWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT--DRIKK  352 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~  352 (513)
                      +...|...-.+..+  +.||- ..-..-..++.+.|++.++-.+++.+-+....|++.    .+..+.+.|+.  +++..
T Consensus       244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkR  317 (531)
T COG3898         244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKR  317 (531)
T ss_pred             ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHH
Confidence            44455554444443  55663 333445678889999999999999998876555543    23345566653  23333


Q ss_pred             HHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH-hcCcHHHHHHHHHHHHh
Q 010320          353 IEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF-RCNAVDKLANFVKRAES  431 (513)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~  431 (513)
                       .+.+..|..++..+..  .+..+-...|++..|..--+....  ..| ....|..|.+.-. ..|+-.++.+.+.+..+
T Consensus       318 -a~~L~slk~nnaes~~--~va~aAlda~e~~~ARa~Aeaa~r--~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         318 -AKKLESLKPNNAESSL--AVAEAALDAGEFSAARAKAEAAAR--EAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             -HHHHHhcCccchHHHH--HHHHHHHhccchHHHHHHHHHHhh--hCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence             2345666666665553  466777777888776654444333  222 3445655554433 34888888888887765


Q ss_pred             c
Q 010320          432 A  432 (513)
Q Consensus       432 ~  432 (513)
                      .
T Consensus       392 A  392 (531)
T COG3898         392 A  392 (531)
T ss_pred             C
Confidence            4

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.66  E-value=0.014  Score=40.82  Aligned_cols=56  Identities=5%  Similarity=-0.045  Sum_probs=40.0

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010320          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      .+|.+.+++++|.++++.+...++.+...|......+.+.|++++|.+.|+...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45666777777777777777766666777777777777777777777777777654

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.63  E-value=0.58  Score=43.47  Aligned_cols=111  Identities=14%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 010320          333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS  412 (513)
Q Consensus       333 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  412 (513)
                      +.+..|.-+...|+...|.++.+.|   .-++-.-|.  ..+.+++..++|++..++-+.   + ..|   .-|.-++.+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~--lki~aLa~~~~w~eL~~fa~s---k-KsP---IGyepFv~~  246 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWW--LKIKALAENKDWDELEKFAKS---K-KSP---IGYEPFVEA  246 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHH--HHHHHHHhcCCHHHHHHHHhC---C-CCC---CChHHHHHH
Confidence            3455566677788777666655444   333333342  689999999999998876432   1 222   237788999


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320          413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME  465 (513)
Q Consensus       413 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  465 (513)
                      |...|+..+|..++.++          .+..-+..|.++|++.+|.+.--+..
T Consensus       247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence            99999999999998872          23556788999999999988765544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.068  Score=49.56  Aligned_cols=158  Identities=9%  Similarity=-0.003  Sum_probs=96.0

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH--------
Q 010320          340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR--VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI--------  409 (513)
Q Consensus       340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------  409 (513)
                      ++.-.|+.+.+...--...++...+....    ++.  ++--.++.+.|...|++.+..+....+..+....        
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld~~n~~al----~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k  253 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLDATNAEAL----YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK  253 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcccchhHHH----HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence            34556777777666444445544443222    332  2334577888888888877755443333222222        


Q ss_pred             --HHHHHhcCcHHHHHHHHHHHHhc---CCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          410 --VSSYFRCNAVDKLANFVKRAESA---GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA  484 (513)
Q Consensus       410 --i~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  484 (513)
                        .+-..+.|++..|.+.|.+.+..   +.+++...|.-...+..+.|+.++|+.--++....+- -=...|..-..++.
T Consensus       254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l  332 (486)
T KOG0550|consen  254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHL  332 (486)
T ss_pred             hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHH
Confidence              23345678999999999987643   3455666676666777889999999988887775431 01112222234455


Q ss_pred             hcCCHhHHHHHHHHHHHC
Q 010320          485 TCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       485 ~~g~~~~A~~~~~~m~~~  502 (513)
                      -.++|++|.+-+++..+.
T Consensus       333 ~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            677888888888776544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.58  E-value=0.67  Score=43.59  Aligned_cols=169  Identities=12%  Similarity=0.043  Sum_probs=98.0

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc---CC-CHhHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCCCH
Q 010320          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKH---LK-TIGTYNALLGAYMY---NGLSDKCQSLFRDLKKEANISPSI  226 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~g~~p~~  226 (513)
                      .+..+...++-.|-...+++..+++.+.+....   +. +..+-....-++-+   .|+.++|++++..+... .-.++.
T Consensus       139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~  217 (374)
T PF13281_consen  139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDP  217 (374)
T ss_pred             cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCCh
Confidence            344555567777899999999999999988752   11 33333344555666   78999999999985544 456788


Q ss_pred             HHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC-HH---HHHHHH---HH-HHc
Q 010320          227 VTYNTLISVFGRL---------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM-WG---KVEEIY---QM-MKA  289 (513)
Q Consensus       227 ~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~---~a~~~~---~~-m~~  289 (513)
                      .+|..+...|-..         ..++.|+..|.+--+.  .||.++=-.+...+...|. .+   +..++-   .. ..+
T Consensus       218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~  295 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR  295 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence            8888888776321         2356666666655442  2443321111112222222 11   222222   11 112


Q ss_pred             CCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320          290 GPV---MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       290 ~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      .|.   ..|-.-+.+++.++.-.|+.+.|.+..+.|.+.
T Consensus       296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            222   234555666667777777777777777776665

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.54  E-value=0.053  Score=48.74  Aligned_cols=97  Identities=13%  Similarity=-0.008  Sum_probs=60.3

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHH
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--PNVFT  263 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~  263 (513)
                      ...|+..+..+.+.|++++|+..|+.+.+.   .|+.    ..+-.+...|...|++++|...|+.+.+.-..  .....
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            345666665556678888888888888765   3443    35666677777777777777777777653211  11233


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          264 YNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +-.+...+...|+.++|.++|++..+
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33344555566677777777666655

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.15  Score=45.55  Aligned_cols=114  Identities=17%  Similarity=0.028  Sum_probs=93.2

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCCCHHH
Q 010320          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG---LSDKCQSLFRDLKKEANISPSIVT  228 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~g~~p~~~~  228 (513)
                      .|-|...|-.|..+|.+.|+++.|..-|.+..+...+|...+..+..++....   ...++..+|+++.+.  -+-|+.+
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira  229 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA  229 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence            45599999999999999999999999999999987788888888887766543   357899999999964  3456667


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010320          229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ...|...+...|++.+|...|+.|.+..  |....+..+|.
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            7778889999999999999999999864  33444555554

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.46  E-value=0.052  Score=42.46  Aligned_cols=48  Identities=8%  Similarity=0.188  Sum_probs=23.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-ccCCCcHHHHHHHHH
Q 010320          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDGKEFPLIRAMIC  339 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~  339 (513)
                      ..|+..+..+++.+|+..|++..|.++.+...+ .+++.+..+|..|+.
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE   96 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            344555555555555555555555555554433 233334444554444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.37  E-value=0.91  Score=42.73  Aligned_cols=31  Identities=16%  Similarity=0.185  Sum_probs=22.3

Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010320          366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEH  396 (513)
Q Consensus       366 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  396 (513)
                      .-|..+.++.++.-.|++++|.+..++|...
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            3344556777777788888888888887764

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.35  E-value=0.32  Score=39.12  Aligned_cols=43  Identities=9%  Similarity=0.060  Sum_probs=21.5

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc
Q 010320          161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN  203 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~  203 (513)
                      .++..+...+.......+++.+...+..+...+|.++..|++.
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~   54 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence            3444444445555555555555544433444555555555543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.30  E-value=0.019  Score=40.10  Aligned_cols=55  Identities=15%  Similarity=0.091  Sum_probs=29.4

Q ss_pred             HHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320          412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       412 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      .|.+.+++++|.++++++...+.. +...+......+.+.|++++|.+.|+...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            445555555555555555544322 3444444555555555555555555555543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.24  E-value=0.043  Score=48.10  Aligned_cols=115  Identities=10%  Similarity=0.140  Sum_probs=76.6

Q ss_pred             CCCHHHHHHHHHHhcc-----cCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH
Q 010320          153 PMTKEEYTKGIKFAGR-----INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI  226 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~  226 (513)
                      .-|-.+|-..+..+..     .+.++-....++.|.+.|+. |..+|+.||..+-+..-.-  ..+|+..-         
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~F---------  132 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKVF---------  132 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHHH---------
Confidence            3488888888888753     46788888888999999985 9999999888775533211  11121111         


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHH
Q 010320          227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW-GKVEEIYQMM  287 (513)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m  287 (513)
                             -.|-  .+-+-++.++++|...|+.||..+-..|++++.+.+.. .+..++.-.|
T Consensus       133 -------~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  133 -------LHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             -------hhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence                   1111  12344778889999999999999988899888776643 2344444444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.04  E-value=1.7  Score=43.18  Aligned_cols=77  Identities=12%  Similarity=0.127  Sum_probs=44.9

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh-----------HHHHHHH
Q 010320          379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL-----------YHSKMVM  447 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-----------~~~li~~  447 (513)
                      +...+..|-++|.+|-.          ..++++.....+++.+|..+-+..-+  +.||+..           |.-.-.+
T Consensus       759 ~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkA  826 (1081)
T KOG1538|consen  759 KLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKA  826 (1081)
T ss_pred             hccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHH
Confidence            34455666666655432          23455666667777777766665432  1122211           3333457


Q ss_pred             HHhcCCHHHHHHHHHHHHhC
Q 010320          448 YASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       448 ~~~~g~~~~A~~~~~~m~~~  467 (513)
                      |.+.|+-.+|..+++++...
T Consensus       827 fhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  827 FHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             HHHhcchHHHHHHHHHhhhh
Confidence            77888888888888877654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.04  E-value=0.36  Score=47.09  Aligned_cols=107  Identities=15%  Similarity=0.132  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010320          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG  270 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (513)
                      .-.+.++.-+-+.|..+.|+.+-.+-..+             .....+.|+++.|.++-++.      .+...|..|...
T Consensus       296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~  356 (443)
T PF04053_consen  296 DQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDIALEIAKEL------DDPEKWKQLGDE  356 (443)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence            34555666666666666666554443322             23344556666655554333      245556666666


Q ss_pred             HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320          271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      ..+.|+++-|++.|.+...         |..|+-.|.-.|+.+.-.++.+.....
T Consensus       357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            6666666666666655433         445555555555555555555444444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.02  E-value=0.89  Score=39.32  Aligned_cols=51  Identities=10%  Similarity=0.173  Sum_probs=32.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHhcCcHHHH
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSV-TTVRIMRCIVSSYFRCNAVDKL  422 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a  422 (513)
                      .+...|.+.|.+..|..-++.+++.-... ........++.+|.+.|..+.+
T Consensus       146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            36777888888888888888888753222 2223455667777777776644

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.00  E-value=0.027  Score=39.99  Aligned_cols=62  Identities=21%  Similarity=0.173  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320          262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MPD-TNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       262 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      .+|+.+...|...|++++|+..|++..+.    |- .|+ ..++..+...+...|++++|++.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555555666666666666666554431    11 122 4455566666666666666666665544

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.99  E-value=0.73  Score=38.10  Aligned_cols=124  Identities=10%  Similarity=0.093  Sum_probs=62.1

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN---LSPNVFTYN  265 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~  265 (513)
                      ++..--.|..+....|+..+|...|++... +-..-|....-.+.++....++...|...++++.+..   -.||  +.-
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L  164 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL  164 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence            333344455555666666666666666553 1223344455555555556666666666666655432   1222  222


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010320          266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK  317 (513)
Q Consensus       266 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~  317 (513)
                      .+...+...|.+.+|+..|+.....  -|+...-..-...+.+.|+.+++..
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence            3344555566666666666666552  3443333333333455555554433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.99  E-value=0.019  Score=40.73  Aligned_cols=61  Identities=11%  Similarity=0.057  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CC-ccc-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010320          404 RIMRCIVSSYFRCNAVDKLANFVKRAESA----GW-RLC-RSLYHSKMVMYASQRRVEEMESVLKEM  464 (513)
Q Consensus       404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  464 (513)
                      .+|+.+...|...|++++|++.+++..+.    |- .|+ ..+++.+...|...|++++|++++++.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34555555666666666666665554321    11 111 334445555555555555555555543

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.97  E-value=0.94  Score=39.16  Aligned_cols=57  Identities=11%  Similarity=0.094  Sum_probs=34.5

Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320          269 AGYMTAWMWGKVEEIYQMMKAGPV--MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      ..+...|++++|.+.|+.+...--  .--....-.++.++.+.|+++.|...++...+.
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345566777777777777765311  111344556677777777777777777776664

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.86  E-value=0.56  Score=36.32  Aligned_cols=67  Identities=15%  Similarity=0.350  Sum_probs=50.3

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010320          438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       438 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  505 (513)
                      ...+..-++.+...|+-+.-.+++.++...+ .+++...-.+..+|.+-|+..++.+++++.-+.|++
T Consensus        86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            3445667788888999999999999987644 788888889999999999999999999999999874

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.86  E-value=0.053  Score=48.49  Aligned_cols=78  Identities=21%  Similarity=0.191  Sum_probs=47.0

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCCCCHHHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK----EANISPSIVTYNTLI  233 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~g~~p~~~~~~~li  233 (513)
                      ++..+++.+...|+++.+.+.++++....+-+...|..+|.+|.+.|+...|+..|+++.+    ..|+.|...+.....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~  234 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE  234 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence            4455566666666666666666666665555666666666666666666666666666543    235555555544444


Q ss_pred             HH
Q 010320          234 SV  235 (513)
Q Consensus       234 ~~  235 (513)
                      ..
T Consensus       235 ~~  236 (280)
T COG3629         235 EI  236 (280)
T ss_pred             HH
Confidence            43

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.86  E-value=0.15  Score=48.54  Aligned_cols=67  Identities=15%  Similarity=-0.009  Sum_probs=58.3

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI---GTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      .+.+...++.+..+|.+.|++++|+..|++..+..+.+.   .+|..+..+|...|+.++|++.+++..+
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455788889999999999999999999999888776555   4599999999999999999999999886

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.77  E-value=0.93  Score=37.53  Aligned_cols=98  Identities=10%  Similarity=-0.013  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc---CCCcHHHH
Q 010320          258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV---DGKEFPLI  334 (513)
Q Consensus       258 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~  334 (513)
                      .|++..--.|..++.+.|+..+|...|++....-+--|......+.++....+++..|...++.+.+..   -.||..  
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--  163 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--  163 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--
Confidence            455555555666666666666666666666554444456666666666666666666666666655432   222222  


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHH
Q 010320          335 RAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       335 ~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      -.+...|...|...+|+.+++..
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a  186 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVA  186 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHH
Confidence            23344455555555555554443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.76  E-value=0.37  Score=42.57  Aligned_cols=99  Identities=19%  Similarity=0.173  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYNT  231 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~  231 (513)
                      ...|+.-+.. .+.|++..|...|....+..+.   ....+-.|...+...|++++|..+|..+.++++-.|-. ..+--
T Consensus       142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            4468777766 4667799999999999987764   46678889999999999999999999999875444443 67888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC
Q 010320          232 LISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      |..+..+.|+.+.|..+|+++.+.
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHH
Confidence            888899999999999999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=95.73  E-value=0.89  Score=37.06  Aligned_cols=91  Identities=9%  Similarity=0.033  Sum_probs=70.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010320          303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC  382 (513)
Q Consensus       303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  382 (513)
                      ..-+...|++++|..+|.-+...+. -+...+..|..++-..++++.|...+...-.+...+..|..  ....+|...|+
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f--~agqC~l~l~~  120 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF--FTGQCQLLMRK  120 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc--hHHHHHHHhCC
Confidence            3344678899999999988776543 35556777888888888888888888877777777777764  37888999999


Q ss_pred             HHHHHHHHHHHHhc
Q 010320          383 LEEMEKSINDAFEH  396 (513)
Q Consensus       383 ~~~a~~~~~~~~~~  396 (513)
                      .+.|...|...+.+
T Consensus       121 ~~~A~~~f~~a~~~  134 (165)
T PRK15331        121 AAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999988877763

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.72  E-value=0.7  Score=35.80  Aligned_cols=60  Identities=13%  Similarity=0.233  Sum_probs=25.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW  434 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  434 (513)
                      .+..+...|+-+.-.+++.++.+.+..  ++..+-.+..+|.+.|+..++.++++++-+.|+
T Consensus        92 ALd~lv~~~kkDqLdki~~~l~kn~~~--~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   92 ALDILVKQGKKDQLDKIYNELKKNEEI--NPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHH-----S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhccCC--CHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            344444555555555555554432111  233344455555555555555555555544443

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=95.71  E-value=0.46  Score=38.68  Aligned_cols=91  Identities=7%  Similarity=-0.121  Sum_probs=65.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  452 (513)
                      ...-+-..|++++|..+|.-+..-+  +.+..-|..|..+|-..+++++|...|......+. -|+..+-....+|...|
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence            3444456789999999988777633  33455577788888888899999998887754443 23444455667888889


Q ss_pred             CHHHHHHHHHHHHh
Q 010320          453 RVEEMESVLKEMEN  466 (513)
Q Consensus       453 ~~~~A~~~~~~m~~  466 (513)
                      +.+.|...|+...+
T Consensus       120 ~~~~A~~~f~~a~~  133 (165)
T PRK15331        120 KAAKARQCFELVNE  133 (165)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999998888876

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.69  E-value=1.1  Score=44.47  Aligned_cols=162  Identities=14%  Similarity=0.170  Sum_probs=101.2

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhcc-CCC------HhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKH-LKT------IGTYNALLGAYMY----NGLSDKCQSLFRDLKKEANISPSI  226 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~------~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~  226 (513)
                      .+..++...+=.|+-+.+++.+.+..+.+ +..      .-.|+.++..++.    ....+.|.++++.+.++   -|+.
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s  266 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS  266 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence            34567777777888888888888765532 222      2345555554443    35678888888888876   4776


Q ss_pred             HHHHHH-HHHHHhcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010320          227 VTYNTL-ISVFGRLLLVDHMEAAFQEIKDSNL---SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL  302 (513)
Q Consensus       227 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  302 (513)
                      ..|... .+.+...|++++|++.|++......   ......+--+.-++.-.++|++|.+.|..+.+.. .-+..+|.-+
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~  345 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL  345 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence            665443 3556777889999998887553110   1122334445556777788888888888888743 2234444444


Q ss_pred             HHHH-HhcCCh-------HHHHHHHHHHH
Q 010320          303 LRGY-AHSGNL-------PRMEKIYELVK  323 (513)
Q Consensus       303 l~~~-~~~g~~-------~~a~~~~~~~~  323 (513)
                      .-+| ...|+.       ++|.++|.++.
T Consensus       346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  346 AAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            4333 345555       66666666654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.68  E-value=1.7  Score=39.92  Aligned_cols=131  Identities=14%  Similarity=0.227  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHccC
Q 010320          206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGR--LL----LVDHMEAAFQEIKDSNL---SPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~  276 (513)
                      +++.+.+++.|.+. |+.-+..+|-+.......  ..    ....|..+|+.|++...   .++..++..|+..  ..++
T Consensus        78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~  154 (297)
T PF13170_consen   78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED  154 (297)
T ss_pred             HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence            44566677777765 777777666553333332  22    24567778888887543   3455666666654  2233


Q ss_pred             ----HHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcC-C--hHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010320          277 ----WGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSG-N--LPRMEKIYELVKHHVDGKEFPLIRAMIC  339 (513)
Q Consensus       277 ----~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~--~~~a~~~~~~~~~~~~~~~~~~~~~li~  339 (513)
                          .+.++.+|+.+.+.|+..+ ..-+.+-+-+++... .  ...+.++++.+.+.|++.....|..+.-
T Consensus       155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence                2456677777777776654 222223233332222 1  3466777778888887776666654433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.66  E-value=0.34  Score=46.31  Aligned_cols=65  Identities=11%  Similarity=0.012  Sum_probs=58.2

Q ss_pred             CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010320          188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      .+...|+.+..+|.+.|++++|+..|++..+.   .|+.    .+|..+..+|...|+.++|++.+++..+.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            37899999999999999999999999998863   6774    35899999999999999999999999874

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.60  E-value=0.94  Score=36.38  Aligned_cols=128  Identities=11%  Similarity=0.100  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010320          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY  271 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  271 (513)
                      ....++..+...+..+....+++.+... + ..+...+|.++..|++.+ .+...+.++.      ..+......++..|
T Consensus         9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c   79 (140)
T smart00299        9 DVSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC   79 (140)
T ss_pred             CHHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence            3456777777778888888888888765 4 367778888888888764 3444444442      12334455577778


Q ss_pred             HHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010320          272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS-GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK  343 (513)
Q Consensus       272 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (513)
                      .+.+.++++..++.++..         |...+..+... ++++.|.+++.+.      .+...|..++..+..
T Consensus        80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~  137 (140)
T smart00299       80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD  137 (140)
T ss_pred             HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence            888888888888877643         22233333333 6777777776641      244566666655543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.44  E-value=1.6  Score=37.95  Aligned_cols=205  Identities=9%  Similarity=0.089  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010320          264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK  343 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  343 (513)
                      |.---.+|-...++++|...+.+..+. .+-+. .+-.      ....++.|.-+.+++.+.  +--+..|+.-...|..
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnr-slfh------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNR-SLFH------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE  103 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcc-cHHH------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence            333444566666677666655554421 11111 1111      122234444444444442  1123345556666777


Q ss_pred             cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh---c-CCCCchHHHHHHHHHHHHhcCcH
Q 010320          344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE---H-KTSVTTVRIMRCIVSSYFRCNAV  419 (513)
Q Consensus       344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~~~~li~~~~~~~~~  419 (513)
                      +|..+-|-.+++...++                 ..+.+.++|+++|++...   . +...--...+..+-+.+.+...+
T Consensus       104 ~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf  166 (308)
T KOG1585|consen  104 CGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF  166 (308)
T ss_pred             hCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence            77766665554433322                 223445555555554332   1 11111122345555566666666


Q ss_pred             HHHHHHHHHHHh----cCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHhH
Q 010320          420 DKLANFVKRAES----AGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENYK---IDCSKKTFWIMYYAYATCGQRRK  491 (513)
Q Consensus       420 ~~a~~~~~~~~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~  491 (513)
                      ++|-..+.+-..    ..--++ -..|-..|-.|.-..++..|.+.++.--+.+   -.-+..+...|+.+|- .|+.++
T Consensus       167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~  245 (308)
T KOG1585|consen  167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE  245 (308)
T ss_pred             hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence            665544443211    111111 1234455556666778888888887744321   2335566777777774 466666


Q ss_pred             HHHHH
Q 010320          492 VNQVL  496 (513)
Q Consensus       492 A~~~~  496 (513)
                      +.+++
T Consensus       246 ~~kvl  250 (308)
T KOG1585|consen  246 IKKVL  250 (308)
T ss_pred             HHHHH
Confidence            66554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.44  E-value=1.5  Score=39.88  Aligned_cols=163  Identities=9%  Similarity=-0.033  Sum_probs=116.7

Q ss_pred             hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCC
Q 010320          166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLL  241 (513)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~  241 (513)
                      +-..|+..+|-..++++.+..+.|..+++--=.+|.-.|+.+.-...++++...+  .+|.    ..-....-++..+|-
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence            3467888889999999998766698899999999999999999999999987542  3444    333445566678899


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010320          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG---PVMPDTNTYLLLLRGYAHSGNLPRMEKI  318 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~  318 (513)
                      +++|++.-++..+.+. -|...-.++...+-..|++.++.+...+-...   +--.-.+-|-...-.+...+.++.|+++
T Consensus       191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            9999999998887653 36666777778888899999998876654331   1111123344444456677899999999


Q ss_pred             HHH-HHhccCCCcH
Q 010320          319 YEL-VKHHVDGKEF  331 (513)
Q Consensus       319 ~~~-~~~~~~~~~~  331 (513)
                      |+. |.+.-...|.
T Consensus       270 yD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  270 YDREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHHHhhccch
Confidence            975 4443333344

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=1.5  Score=39.24  Aligned_cols=46  Identities=4%  Similarity=-0.047  Sum_probs=25.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN  417 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  417 (513)
                      .+...+...|+.++|.+.+-.++++...-.+...=..++..+.-.|
T Consensus       241 ~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         241 ALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            3666666777777777766666655433333333444555444444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=2  Score=38.61  Aligned_cols=143  Identities=13%  Similarity=0.040  Sum_probs=90.1

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010320          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ......|++.+|..+|+........+...--.+..+|...|+.+.|..++..+..+. -.........-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCC
Confidence            345678888889998888887766677777788888889999999999998887541 1111122223445555555555


Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCC
Q 010320          244 HMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG--PVMPDTNTYLLLLRGYAHSGN  311 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~  311 (513)
                      +...+-.+.-..   | |...--.+...+...|+.++|.+.+-.+.+.  |.. |...-..++..+.-.|.
T Consensus       221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP  287 (304)
T ss_pred             CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence            555555554432   4 5555566667777778888777765555442  332 44455556655555553

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.22  E-value=2.7  Score=39.26  Aligned_cols=131  Identities=13%  Similarity=0.102  Sum_probs=85.9

Q ss_pred             CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCcc-cHh
Q 010320          362 EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-AGWRL-CRS  439 (513)
Q Consensus       362 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~p-~~~  439 (513)
                      .++..|-. ..-..++.+.|+..++-.+++.+.+....|.   ++  .+..+.+.|+.  ++.-+++.++ ...+| +.+
T Consensus       259 ~pdlvPaa-v~AAralf~d~~~rKg~~ilE~aWK~ePHP~---ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnae  330 (531)
T COG3898         259 APDLVPAA-VVAARALFRDGNLRKGSKILETAWKAEPHPD---IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAE  330 (531)
T ss_pred             CCccchHH-HHHHHHHHhccchhhhhhHHHHHHhcCCChH---HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchH
Confidence            34555542 2456788899999999999999988655443   22  23344555553  3343443321 12233 345


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHC
Q 010320          440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC-GQRRKVNQVLGLMCKN  502 (513)
Q Consensus       440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~  502 (513)
                      .--.+..+-...|++..|..--+...+  ..|....|..|.+.-... |+-.++..++-+..+.
T Consensus       331 s~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         331 SSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            555667777788888888776666654  458888888888876655 9999999888877665

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.09  E-value=3.2  Score=39.49  Aligned_cols=124  Identities=15%  Similarity=0.153  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHH-HHHHHH
Q 010320          228 TYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY-LLLLRG  305 (513)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~  305 (513)
                      +|...|+...+...++.|..+|-+..+.| +.+++..++++|..++. |+...|.++|+.=...  -||...| ...+.-
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f  475 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLF  475 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence            34444444445555555555555555554 44455555555554433 4455555555442221  1232222 223333


Q ss_pred             HHhcCChHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHhcCChhHHHHHHH
Q 010320          306 YAHSGNLPRMEKIYELVKHHVDGKE--FPLIRAMICAYSKCSVTDRIKKIEA  355 (513)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~  355 (513)
                      +...++-+.|..+|+..+.. +..+  ...|..+|+--..-|++..+....+
T Consensus       476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~  526 (660)
T COG5107         476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEE  526 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHH
Confidence            44455555555555533322 1111  2344444444444444444433333

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.01  E-value=2.7  Score=40.66  Aligned_cols=60  Identities=5%  Similarity=-0.045  Sum_probs=37.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010320          265 NYLIAGYMTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       265 ~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      ..+..++-+.|+.++|++.|++|.+.. ..-+......|+.++...+.+.++..++.+-.+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            445555566777777777777776532 111234566677777777777777777766543

The molecular function of this protein is uncertain.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.98  E-value=2.9  Score=38.42  Aligned_cols=133  Identities=17%  Similarity=0.184  Sum_probs=86.1

Q ss_pred             CHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHH--c----CChHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 010320          171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMY--N----GLSDKCQSLFRDLKKEANI--SPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~~g~--~p~~~~~~~li~~~~~~g~  241 (513)
                      .+++..++++.|.+.|+. +..+|-+.......  .    -...+|.++|+.|++....  .++-.++..|+..  ..++
T Consensus        77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~  154 (297)
T PF13170_consen   77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED  154 (297)
T ss_pred             HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence            356678889999999986 65666553333333  2    2367899999999986321  3344566666554  3333


Q ss_pred             ----hhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHccC--HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010320          242 ----VDHMEAAFQEIKDSNLSPNVF--TYNYLIAGYMTAWM--WGKVEEIYQMMKAGPVMPDTNTYLLLLRG  305 (513)
Q Consensus       242 ----~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  305 (513)
                          .+.++.+|+.+.+.|+..+..  ....++..+-....  ..++.++++.+.+.|+++....|..+.-.
T Consensus       155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence                356788899999888766443  33333333222211  45788999999999999888777665433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.85  E-value=0.094  Score=32.22  Aligned_cols=39  Identities=18%  Similarity=0.142  Sum_probs=21.6

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL  196 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  196 (513)
                      ++..+...|.+.|++++|.++|++..+..+.|...|..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            344555555566666666666666655554455555444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.83  E-value=3.1  Score=38.04  Aligned_cols=19  Identities=21%  Similarity=0.440  Sum_probs=11.4

Q ss_pred             cccCCHHHHHHHHHHHHhc
Q 010320          167 GRINNVDLAADLFAEAANK  185 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~  185 (513)
                      .+.|+++.|..++.+....
T Consensus         4 ~~~~~~~~A~~~~~K~~~~   22 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDL   22 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhH
Confidence            3556666666666665543

It is also involved in sporulation [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.82  E-value=2.6  Score=37.09  Aligned_cols=81  Identities=19%  Similarity=0.192  Sum_probs=56.1

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT  231 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~  231 (513)
                      -...|+..+.- .+.|++++|.+.|+.+..+.+-   ...+.-.++.++-+.+++++|+..+++..+..+-.||. -|-.
T Consensus        34 ~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~  111 (254)
T COG4105          34 ASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAY  111 (254)
T ss_pred             HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHH
Confidence            34445544443 5778999999999998876652   45666677778888999999999999888776656665 3444


Q ss_pred             HHHHHH
Q 010320          232 LISVFG  237 (513)
Q Consensus       232 li~~~~  237 (513)
                      -|.+++
T Consensus       112 YlkgLs  117 (254)
T COG4105         112 YLKGLS  117 (254)
T ss_pred             HHHHHH
Confidence            444443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.82  E-value=1.3  Score=34.32  Aligned_cols=91  Identities=15%  Similarity=0.095  Sum_probs=68.8

Q ss_pred             HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCC
Q 010320          165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV---TYNTLISVFGRLLL  241 (513)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---~~~~li~~~~~~g~  241 (513)
                      +++..|+++.|++.|.+....-+.+...||.-..++--.|+.++|++=+++..+-.|-+ +..   .|.--...|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence            45788999999999998887666688899999999999999999999888887654433 222   33444455677788


Q ss_pred             hhHHHHHHHHHHHCC
Q 010320          242 VDHMEAAFQEIKDSN  256 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g  256 (513)
                      -+.|..=|+..-+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            888888887776655

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.76  E-value=1.9  Score=35.29  Aligned_cols=133  Identities=11%  Similarity=0.071  Sum_probs=67.4

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC--HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH-
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT--IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT-  231 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~-  231 (513)
                      +...|..-++. ++.+..++|+.-|..+.+.|..+  +-.--.+.......|+...|...|+++-.. .-.|-..-=.. 
T Consensus        58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~AR  135 (221)
T COG4649          58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLAR  135 (221)
T ss_pred             chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHH
Confidence            33444444443 56666777777777777766542  222222234455667777777777777653 22222210011 


Q ss_pred             H--HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          232 L--ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       232 l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      |  .-.+...|.++++..-.+-+-..|-..-...-..|.-+-.+.|++.+|.+.|+.+..
T Consensus       136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            1  112345556666555555554433322333344455555556666666666666554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.73  E-value=4  Score=38.86  Aligned_cols=125  Identities=10%  Similarity=0.030  Sum_probs=88.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh-HHHHHHHHHhc
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL-YHSKMVMYASQ  451 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~li~~~~~~  451 (513)
                      .+....+..-++.|..+|-+..+.+...+++.++++++..++ .|+...|..+|+.-...  -||... .+-.+..+...
T Consensus       403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~i  479 (660)
T COG5107         403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRI  479 (660)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHh
Confidence            455555667789999999998888866677888899988654 57788888888843322  133333 35667777888


Q ss_pred             CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          452 RRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      ++-+.|..+|+...++ +..+  ...|..+|..-..-|+...+..+-++|.+
T Consensus       480 nde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         480 NDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             CcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            9999999999854432 1222  45788899888888888777766666543

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=94.59  E-value=3.1  Score=37.35  Aligned_cols=132  Identities=9%  Similarity=-0.036  Sum_probs=68.8

Q ss_pred             CHHHHHHHHHHHHhc--cCCCHhHHHHHHHHHHH-cC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010320          171 NVDLAADLFAEAANK--HLKTIGTYNALLGAYMY-NG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME  246 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~--~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~  246 (513)
                      .+-+|+.+|+.....  =+.|..+...+++.... .+ ....--++.+-+....|-.++..+...+|..+++.+++..-.
T Consensus       143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~  222 (292)
T PF13929_consen  143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF  222 (292)
T ss_pred             HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence            344555555522211  11355566666665555 21 222233333334433344566666666666666666666666


Q ss_pred             HHHHHHHHC-CCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-----HHcCCCCCCHHHHHHH
Q 010320          247 AAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM-----MKAGPVMPDTNTYLLL  302 (513)
Q Consensus       247 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~~~t~~~l  302 (513)
                      ++++..... +..-|...|..+|......|+..-..++.++     +++.|+..+...-..+
T Consensus       223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L  284 (292)
T PF13929_consen  223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL  284 (292)
T ss_pred             HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence            666665543 4445666666666666666666555555544     2334444444443333

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.59  E-value=6.5  Score=40.60  Aligned_cols=150  Identities=11%  Similarity=0.061  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHh----cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320          155 TKEEYTKGIKFA----GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN  230 (513)
Q Consensus       155 ~~~~~~~ll~~~----~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~  230 (513)
                      |......+...|    .+.|++++|...|-+-...  -++   ..+|.-|....+..+-..+++.+.+. |+ .+...-.
T Consensus       363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~---s~Vi~kfLdaq~IknLt~YLe~L~~~-gl-a~~dhtt  435 (933)
T KOG2114|consen  363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP---SEVIKKFLDAQRIKNLTSYLEALHKK-GL-ANSDHTT  435 (933)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh---HHHHHHhcCHHHHHHHHHHHHHHHHc-cc-ccchhHH
Confidence            444444444443    3566666666655543321  111   23445555555566666666666654 43 3444556


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010320          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  310 (513)
                      .|+.+|.+.++.+.-.++.+... .|..-  .-....+..+.+.+-.++|..+-.....     .......++   -..+
T Consensus       436 lLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~  504 (933)
T KOG2114|consen  436 LLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLH  504 (933)
T ss_pred             HHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhc
Confidence            67777777777766665555443 22210  0123344445555555555544443322     222333333   3456


Q ss_pred             ChHHHHHHHHHH
Q 010320          311 NLPRMEKIYELV  322 (513)
Q Consensus       311 ~~~~a~~~~~~~  322 (513)
                      ++++|.+++..+
T Consensus       505 ny~eAl~yi~sl  516 (933)
T KOG2114|consen  505 NYEEALRYISSL  516 (933)
T ss_pred             CHHHHHHHHhcC
Confidence            777777776543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.58  E-value=3.6  Score=37.63  Aligned_cols=166  Identities=12%  Similarity=0.119  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010320          332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE-YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV  410 (513)
Q Consensus       332 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li  410 (513)
                      .+...++.+|...+..+...++.+.++.+.... ..+..+..-+..+.+.++.+++.+++.+|+..-..+  ...+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~--e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS--ESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc--cchHHHHH
Confidence            467788888888888887777777666653322 122223345677777889999999999999864322  12244455


Q ss_pred             HHHHh--cCcHHHHHHHHHHHHhcCCcccHh-hHHHH-HH---HHHhcC------CHHHHHHHHHHHHh-CCCCCCHHHH
Q 010320          411 SSYFR--CNAVDKLANFVKRAESAGWRLCRS-LYHSK-MV---MYASQR------RVEEMESVLKEMEN-YKIDCSKKTF  476 (513)
Q Consensus       411 ~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l-i~---~~~~~g------~~~~A~~~~~~m~~-~~~~p~~~~~  476 (513)
                      ..+..  ......|...+..+....+.|... ....+ +.   ...+.+      +++...++++...+ .+.+.+..+-
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~  242 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA  242 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            44422  223345666666665444444443 11111 11   111221      25555555654332 2223333332


Q ss_pred             H---HHH----HHHHhcCCHhHHHHHHHHH
Q 010320          477 W---IMY----YAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       477 ~---~li----~~~~~~g~~~~A~~~~~~m  499 (513)
                      .   +++    ..+.+.++|+.|.++|+--
T Consensus       243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA  272 (278)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            2   333    3456789999999999854

It is also involved in sporulation [].

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=94.57  E-value=6.5  Score=40.56  Aligned_cols=43  Identities=23%  Similarity=0.244  Sum_probs=25.2

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc
Q 010320          161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN  203 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~  203 (513)
                      .+|-.|.|+|++++|.++..+....--.....+-..+..|+..
T Consensus       116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence            3555667778888887777554443223445666666666654

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.56  E-value=0.65  Score=45.31  Aligned_cols=133  Identities=13%  Similarity=0.118  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      ....+.++..+-+.|..+.|+++-..-.           .-.....+.|+.+.|.++.++.       .+...|..|.+.
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~  356 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPD-----------HRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGDE  356 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChH-----------HHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHH
Confidence            5557888889999999999988766532           2345567789999888765433       367799999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010320          236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a  315 (513)
                      ..+.|+++-|++.|++..+         |..|+-.|.-.|+.+...++.+.....|      -++....++.-.|++++.
T Consensus       357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c  421 (443)
T PF04053_consen  357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC  421 (443)
T ss_dssp             HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred             HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence            9999999999999988764         6777778888898888888887777766      256666667777888887


Q ss_pred             HHHHHH
Q 010320          316 EKIYEL  321 (513)
Q Consensus       316 ~~~~~~  321 (513)
                      .+++.+
T Consensus       422 v~lL~~  427 (443)
T PF04053_consen  422 VDLLIE  427 (443)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.55  E-value=4.5  Score=38.63  Aligned_cols=72  Identities=10%  Similarity=0.057  Sum_probs=41.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhccCC----CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH
Q 010320          300 LLLLRGYAHSGNLPRMEKIYELVKHHVDG----KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR  375 (513)
Q Consensus       300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  375 (513)
                      +..+.++...|++.+++.+++++...-.+    -+..+|+.++-++++.        .+-.+.+....++.|.+|. |+.
T Consensus       132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYe-mil  202 (549)
T PF07079_consen  132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDYYE-MIL  202 (549)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHHHH-HHH
Confidence            45566677778888887777777654333    5777777766666653        2222233334445555453 555


Q ss_pred             HHHhc
Q 010320          376 VYAKE  380 (513)
Q Consensus       376 ~~~~~  380 (513)
                      .|.+.
T Consensus       203 fY~kk  207 (549)
T PF07079_consen  203 FYLKK  207 (549)
T ss_pred             HHHHH
Confidence            55443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.53  E-value=3.1  Score=38.37  Aligned_cols=44  Identities=14%  Similarity=0.114  Sum_probs=22.2

Q ss_pred             ccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHH
Q 010320          168 RINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQS  211 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~  211 (513)
                      ...+.++|+..|.+...+--.   -..+|..+..+.++.|.+++++.
T Consensus        18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~   64 (518)
T KOG1941|consen   18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK   64 (518)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence            445556666666554442110   23445555556666665555544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.98  E-value=2.6  Score=34.23  Aligned_cols=51  Identities=18%  Similarity=0.029  Sum_probs=24.2

Q ss_pred             ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320          168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      +.++.+++..+++.+.-..+.....-..-...+.+.|++.+|+.+|+++..
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            445555555555555544333222222222334455555555555555543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.97  E-value=2.8  Score=38.68  Aligned_cols=127  Identities=10%  Similarity=0.063  Sum_probs=78.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCcccHhhHHH
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLCRSLYHS  443 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~~~~~  443 (513)
                      .|..++.-.+.++++++.|+...+-.    ...-...++-.|-..|.+..++++|.-+..+..+    .++.--..-|..
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            46666777778888888887766522    2222344677888888888999988877776532    222211112222


Q ss_pred             -----HHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010320          444 -----KMVMYASQRRVEEMESVLKEMEN----YKIDC-SKKTFWIMYYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       444 -----li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~  498 (513)
                           +..++-..|..-+|.+.-++..+    .|-++ -......+.+.|...|+.|.|+.-|++
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence                 33455667777777777665543    23222 233445677888888988888776665

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.95  E-value=0.77  Score=41.28  Aligned_cols=78  Identities=12%  Similarity=0.050  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCCCCHHHHHH
Q 010320          227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVMPDTNTYLL  301 (513)
Q Consensus       227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~  301 (513)
                      .++..++..+...|+.+.+.+.++++.+... -|...|..+|.+|.+.|+...|+..|+.+.+     -|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            4667788888888899999999999888754 3888899999999999999999998888765     477777766665


Q ss_pred             HHHH
Q 010320          302 LLRG  305 (513)
Q Consensus       302 ll~~  305 (513)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5555

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.95  E-value=1.8  Score=40.59  Aligned_cols=92  Identities=3%  Similarity=-0.067  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 010320          334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY  413 (513)
Q Consensus       334 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  413 (513)
                      +..+.-+|.+.+++..|.+.-....++.+++....+  .-..+|...|+++.|...|+++++  ..|.+..+-+.++..-
T Consensus       260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy--RrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY--RRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK  335 (397)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH--HHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence            334444455555555544444444444444444432  244555555555555555555555  2333333333444333


Q ss_pred             HhcCcHHH-HHHHHHHH
Q 010320          414 FRCNAVDK-LANFVKRA  429 (513)
Q Consensus       414 ~~~~~~~~-a~~~~~~~  429 (513)
                      .+...... ..++|..|
T Consensus       336 ~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33332222 23444444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.88  E-value=2.1  Score=34.11  Aligned_cols=85  Identities=12%  Similarity=0.053  Sum_probs=51.8

Q ss_pred             cCchhHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHH
Q 010320          117 HSNGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN  194 (513)
Q Consensus       117 ~p~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~  194 (513)
                      .|....|.....++ .++++.|.+.|+.+..+--.| +....+.-.++.+|.+.+++++|...+++..+..+. ....|.
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            34555666666666 457777777777776653222 234555666777777777777777777777776654 234455


Q ss_pred             HHHHHHHH
Q 010320          195 ALLGAYMY  202 (513)
Q Consensus       195 ~li~~~~~  202 (513)
                      ..+.+++.
T Consensus        87 ~Y~~gL~~   94 (142)
T PF13512_consen   87 YYMRGLSY   94 (142)
T ss_pred             HHHHHHHH
Confidence            55555443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.70  E-value=8.1  Score=38.39  Aligned_cols=117  Identities=13%  Similarity=0.101  Sum_probs=67.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHH-HHHHHHhcCcHHHHHHHHHHHHhc--CCc-ccHhhHHHHHHHHHhcCCHH
Q 010320          380 EDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVKRAESA--GWR-LCRSLYHSKMVMYASQRRVE  455 (513)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~--~~~-p~~~~~~~li~~~~~~g~~~  455 (513)
                      ....+.|.+++..+..+-  |. ...|.. -.+.+...|++++|.+.+++....  .++ .....+--+.-.+.-..+|+
T Consensus       246 ~~~~~~a~~lL~~~~~~y--P~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~  322 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRY--PN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE  322 (468)
T ss_pred             CCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence            346777778887777642  22 222322 234455678888888888865421  111 11222333445566788888


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCH-------hHHHHHHHHHH
Q 010320          456 EMESVLKEMENYKIDCSKKTFWIMYY-AYATCGQR-------RKVNQVLGLMC  500 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~  500 (513)
                      +|.+.|..+.+.+ .-+..+|..+.. ++...|+.       ++|.++|++..
T Consensus       323 ~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  323 EAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            8888888888765 334444543332 33456666       77777777653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.68  E-value=9.3  Score=39.01  Aligned_cols=304  Identities=11%  Similarity=0.049  Sum_probs=164.4

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCH--HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010320          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV--DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC  209 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A  209 (513)
                      +.+..|.++-.|+......    ...+|......+.+..+.  +++.+..++=.........+|..+.+-...+|+.+.|
T Consensus       451 ~~Y~vaIQva~~l~~p~~~----~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA  526 (829)
T KOG2280|consen  451 HLYSVAIQVAKLLNLPESQ----GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELA  526 (829)
T ss_pred             chhHHHHHHHHHhCCcccc----ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHH
Confidence            4566677777776433211    145666666666655322  2233333322221123567888888888899999999


Q ss_pred             HHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------CCCCHHHHHHHHH-----
Q 010320          210 QSLFRDLKKEANI----SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-----------LSPNVFTYNYLIA-----  269 (513)
Q Consensus       210 ~~~~~~m~~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~~~~~li~-----  269 (513)
                      ..+++.=... +.    -.+..-+...+.-+.+.|+.+....++-+|.+.-           ..-....|--++.     
T Consensus       527 ~kLle~E~~~-~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~  605 (829)
T KOG2280|consen  527 RKLLELEPRS-GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRA  605 (829)
T ss_pred             HHHHhcCCCc-cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchh
Confidence            9887643221 11    0122345566777788888888887777666421           0111122222222     


Q ss_pred             ---HHHHccCHHHHHHHH--HHH----HcCCCCCCHHHHHHHHHHHHhcCChHHH----------HHHHHHHHh-ccCCC
Q 010320          270 ---GYMTAWMWGKVEEIY--QMM----KAGPVMPDTNTYLLLLRGYAHSGNLPRM----------EKIYELVKH-HVDGK  329 (513)
Q Consensus       270 ---~~~~~g~~~~a~~~~--~~m----~~~g~~p~~~t~~~ll~~~~~~g~~~~a----------~~~~~~~~~-~~~~~  329 (513)
                         .+.+.++-.++..-|  +.-    ...|..|+   .....++|.+.....-.          +++.+.+.. .|...
T Consensus       606 ~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f  682 (829)
T KOG2280|consen  606 TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSF  682 (829)
T ss_pred             hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence               011111111111111  110    01122233   23334445444432211          122222222 23333


Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010320          330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI  409 (513)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  409 (513)
                      ...+.+..+.-+...|+..+|+++...|   .-++-.-|-  .-+.+++..+++++-+++-+.+..    |  . -|.-+
T Consensus       683 ~dlSl~dTv~~li~~g~~k~a~ql~~~F---kipdKr~~w--Lk~~aLa~~~kweeLekfAkskks----P--I-Gy~PF  750 (829)
T KOG2280|consen  683 VDLSLHDTVTTLILIGQNKRAEQLKSDF---KIPDKRLWW--LKLTALADIKKWEELEKFAKSKKS----P--I-GYLPF  750 (829)
T ss_pred             ccCcHHHHHHHHHHccchHHHHHHHHhc---CCcchhhHH--HHHHHHHhhhhHHHHHHHHhccCC----C--C-CchhH
Confidence            3344556666777778777666665544   333322221  468889999999998776544322    2  1 26778


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010320          410 VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM  464 (513)
Q Consensus       410 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  464 (513)
                      +.+|.+.|+.++|.+++.+...     .    .-.+.+|.+.|++.+|.++--+-
T Consensus       751 Ve~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~~  796 (829)
T KOG2280|consen  751 VEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAEH  796 (829)
T ss_pred             HHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHHh
Confidence            8999999999999999886531     1    14678899999999998875443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.61  E-value=1.9  Score=40.51  Aligned_cols=90  Identities=10%  Similarity=-0.013  Sum_probs=44.3

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhc-c----CC----------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010320          163 IKFAGRINNVDLAADLFAEAANK-H----LK----------TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV  227 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~-~----~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~  227 (513)
                      -..|.+.|++..|...|+..... +    .+          -..+++.|..+|.+.+++.+|++.-++.+..  -++|+-
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~K  292 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVK  292 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchh
Confidence            34567888888888888875431 0    00          0223444444444444444444444444432  133333


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010320          228 TYNTLISVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      ..---..++...|+++.|+..|+++++
T Consensus       293 ALyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  293 ALYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            444444444444444444444444444

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.56  E-value=2.6  Score=32.69  Aligned_cols=93  Identities=6%  Similarity=-0.009  Sum_probs=71.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH---hhHHHHHHHHHh
Q 010320          374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR---SLYHSKMVMYAS  450 (513)
Q Consensus       374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~  450 (513)
                      .-++...|+++.|++.|.+.+.  ..|.....||.-..++.-.|+.++|++=+++..+..-.-+.   ..|..-...|-.
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            3456788999999999999887  55666778999999999999999999999887654321121   224444456777


Q ss_pred             cCCHHHHHHHHHHHHhCC
Q 010320          451 QRRVEEMESVLKEMENYK  468 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~~  468 (513)
                      .|+-+.|..=|+..-+.|
T Consensus       128 ~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  128 LGNDDAARADFEAAAQLG  145 (175)
T ss_pred             hCchHHHHHhHHHHHHhC
Confidence            899999999998888777

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.45  E-value=2.8  Score=37.27  Aligned_cols=102  Identities=13%  Similarity=-0.007  Sum_probs=82.6

Q ss_pred             HHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHH
Q 010320          122 AFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALL  197 (513)
Q Consensus       122 ~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li  197 (513)
                      .|...+..+ .++...|.+.|....+.--. -......+--|...+...|+++.|..+|..+.+..+.   -+..+--|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            699888887 66888999888877665321 2345667778999999999999999999999987653   467888888


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010320          198 GAYMYNGLSDKCQSLFRDLKKEANISPSIV  227 (513)
Q Consensus       198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~  227 (513)
                      .+..+.|+.++|..+|+++.++   -|+..
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~---YP~t~  249 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR---YPGTD  249 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH---CCCCH
Confidence            9999999999999999999987   36543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.30  E-value=7.4  Score=36.75  Aligned_cols=183  Identities=11%  Similarity=-0.024  Sum_probs=101.2

Q ss_pred             CCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010320          224 PSIVTYNTLI-SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM--TAWMWGKVEEIYQMMKAGPVMPDTNTYL  300 (513)
Q Consensus       224 p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~t~~  300 (513)
                      |...+|-.+- .++.-.|+.++|..+--..++..   .+..+...+++.+  -.++.+.+...|++-+..+  |+...-.
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk  240 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK  240 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence            4444454433 34556788888887766666532   2334555554433  3567888888888877643  5432222


Q ss_pred             H---H----------HHHHHhcCChHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010320          301 L---L----------LRGYAHSGNLPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE  364 (513)
Q Consensus       301 ~---l----------l~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  364 (513)
                      .   .          .+-..+.|++..|.+.|.+.+..   ...+++..|........+.|+.+++..--.....+...-
T Consensus       241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY  320 (486)
T ss_pred             hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence            1   1          22345788899999999888763   334455566666666777787665544333222221111


Q ss_pred             cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 010320          365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY  413 (513)
Q Consensus       365 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  413 (513)
                      +.+  +..-..++...++|++|.+-|+...+....+....++.-...++
T Consensus       321 ika--ll~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL  367 (486)
T KOG0550|consen  321 IKA--LLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL  367 (486)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence            111  11122334445778888888887766544433344443333333

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.19  E-value=11  Score=39.14  Aligned_cols=175  Identities=8%  Similarity=0.039  Sum_probs=89.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010320          230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI----AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG  305 (513)
Q Consensus       230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  305 (513)
                      ..-|+..++...++.|+.+-+.-   +.  |..+...++    +-+.+.|++++|...|-+-... +.|     ..+|.-
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k  406 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK  406 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence            34455555555666665554332   22  222222333    3344577777777766554331 122     223444


Q ss_pred             HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHH
Q 010320          306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE  385 (513)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  385 (513)
                      |....++..-..+++.+.+.|.. +...-+.|+.+|.+.++.++..+..   .... .+..-......+..+.+.+-.++
T Consensus       407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI---~~~~-~g~~~fd~e~al~Ilr~snyl~~  481 (933)
T KOG2114|consen  407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFI---SKCD-KGEWFFDVETALEILRKSNYLDE  481 (933)
T ss_pred             hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHH---hcCC-CcceeeeHHHHHHHHHHhChHHH
Confidence            45555555556666666666654 3334467777777777666443332   2222 22222112246666677777777


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010320          386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA  429 (513)
Q Consensus       386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  429 (513)
                      |..+-.+...      .......+   +-..+++++|++++..+
T Consensus       482 a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  482 AELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence            7655433211      12223333   33567778887777754

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.17  E-value=8.9  Score=37.30  Aligned_cols=155  Identities=10%  Similarity=0.094  Sum_probs=88.8

Q ss_pred             HccCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010320          273 TAWMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK  351 (513)
Q Consensus       273 ~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  351 (513)
                      +..+...-+++-++..+  +.||- ..|..|..  -....+.++++++++..+.|-..  .-......   ..|.     
T Consensus       180 RERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~--lg~s~~~~---~~g~-----  245 (539)
T PF04184_consen  180 RERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEAS--LGKSQFLQ---HHGH-----  245 (539)
T ss_pred             hcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHh--hchhhhhh---cccc-----
Confidence            34455555555555555  34553 33333222  23445788888988877754210  00000111   1110     


Q ss_pred             HHHHHHHhCCCCCcc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010320          352 KIEALMRLIPEKEYR--PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA  429 (513)
Q Consensus       352 ~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  429 (513)
                       ..+   ....++..  ......+..++-+.|+.++|++.++++.+.....+...+...|+.++...+.+.++..++.+-
T Consensus       246 -~~e---~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  246 -FWE---AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             -hhh---hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence             011   11122222  222224777778899999999999999876544456667888999999999999999999987


Q ss_pred             HhcCCccc-HhhHHHHH
Q 010320          430 ESAGWRLC-RSLYHSKM  445 (513)
Q Consensus       430 ~~~~~~p~-~~~~~~li  445 (513)
                      .+...+.+ ...|+..+
T Consensus       322 dDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  322 DDISLPKSATICYTAAL  338 (539)
T ss_pred             ccccCCchHHHHHHHHH
Confidence            65433222 34466544

The molecular function of this protein is uncertain.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.79  E-value=0.46  Score=29.09  Aligned_cols=27  Identities=15%  Similarity=0.199  Sum_probs=15.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320          441 YHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       441 ~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      +..+...|.+.|++++|+++|++..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444555555555555565555555554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.29  E-value=0.35  Score=28.06  Aligned_cols=26  Identities=12%  Similarity=-0.000  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          475 TFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       475 ~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +|..|...|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46677788888888888888887743

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.23  E-value=7.7  Score=34.24  Aligned_cols=185  Identities=11%  Similarity=0.051  Sum_probs=118.3

Q ss_pred             cCchhHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHH
Q 010320          117 HSNGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN  194 (513)
Q Consensus       117 ~p~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~  194 (513)
                      .|-...|+..+..+ .++++.|..-|+.+..+.- +-+....+.-.++-++-+.++.+.|+..+++.....+. ....|-
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            56777899999988 5699999999999987643 24456777788888999999999999999999987764 444566


Q ss_pred             HHHHHHHHc-------CCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-
Q 010320          195 ALLGAYMYN-------GLS---DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT-  263 (513)
Q Consensus       195 ~li~~~~~~-------g~~---~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-  263 (513)
                      .-|.+++.-       ++.   .+|+.-|+++.++   -||..             -..+|..-...+..      ... 
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS~-------------Ya~dA~~~i~~~~d------~LA~  168 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---YPNSR-------------YAPDAKARIVKLND------ALAG  168 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---CCCCc-------------chhhHHHHHHHHHH------HHHH
Confidence            666665542       233   3444445555544   24431             11222222222211      000 


Q ss_pred             H-HHHHHHHHHccCHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320          264 Y-NYLIAGYMTAWMWGKVEEIYQMMKAGPVMP---DTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       264 ~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      + -.+...|.+.|.+..|..-+++|.+. ..-   .....-.+..+|...|-.++|.+.-+-+...
T Consensus       169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         169 HEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            1 12445677888888888888888775 211   2345556677788888888777766555543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.17  E-value=2.3  Score=35.72  Aligned_cols=60  Identities=15%  Similarity=0.167  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 010320          228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN--VFTYNYLIAGYMTAWMWGKVEEIYQMM  287 (513)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m  287 (513)
                      .+..+...|++.|+.+.|.+.|.++.+....+.  ...+-.+|....-.|++..+...+.+.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            344444445555555555555555444322221  223344444444455555555444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.06  E-value=16  Score=37.57  Aligned_cols=104  Identities=10%  Similarity=0.158  Sum_probs=70.9

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL  239 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~  239 (513)
                      -++.+.+.+.+++|+++-+.....-..  ....+...|..+.-.|++++|-...-.|...     +..-|--.+..+...
T Consensus       362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~  436 (846)
T KOG2066|consen  362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAEL  436 (846)
T ss_pred             hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhccc
Confidence            467778888899998887766543222  3567888888899999999999988888753     666777777777766


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010320          240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT  273 (513)
Q Consensus       240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  273 (513)
                      ++....   +.-+.......+...|..++..+..
T Consensus       437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence            665542   3333332223455667777776666

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.00  E-value=21  Score=38.73  Aligned_cols=82  Identities=15%  Similarity=0.070  Sum_probs=42.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  452 (513)
                      -+.+|..+|+|.+|+.+-.++......  ...+-..|+.-+...++.-+|-+++.+...   .     +.-.+..|++..
T Consensus       971 Al~a~~~~~dWr~~l~~a~ql~~~~de--~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen  971 ALKAYKECGDWREALSLAAQLSEGKDE--LVILAEELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAK 1040 (1265)
T ss_pred             HHHHHHHhccHHHHHHHHHhhcCCHHH--HHHHHHHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHh
Confidence            455666667777777666554332111  111123455556666666666666554431   1     122344566666


Q ss_pred             CHHHHHHHHHHH
Q 010320          453 RVEEMESVLKEM  464 (513)
Q Consensus       453 ~~~~A~~~~~~m  464 (513)
                      .|++|..+...-
T Consensus      1041 ~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1041 EWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHHHHhc
Confidence            666666655433

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.96  E-value=8.4  Score=34.10  Aligned_cols=230  Identities=11%  Similarity=0.074  Sum_probs=144.2

Q ss_pred             cccCchhHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc---cC-
Q 010320          115 RRHSNGYAFVELMKQL---GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK---HL-  187 (513)
Q Consensus       115 ~~~p~~~~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~-  187 (513)
                      +..||+..=+..-.+-   ...|+.|+.-|+.+.+..+..-..--.+...+|..+.+.|++++..+.+.++...   .+ 
T Consensus        21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT  100 (440)
T KOG1464|consen   21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT  100 (440)
T ss_pred             CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence            3466766655554333   2478889999998887754333334557778899999999999999999987642   11 


Q ss_pred             C--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---
Q 010320          188 K--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV----TYNTLISVFGRLLLVDHMEAAFQEIKDSNLS---  258 (513)
Q Consensus       188 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---  258 (513)
                      .  +..+-|+++.....+.+.+.-.++|+.-.....-.-|..    |-+-|...|...|.+....++++++.+..-.   
T Consensus       101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG  180 (440)
T KOG1464|consen  101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG  180 (440)
T ss_pred             ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence            1  456778888888888888777777764332100011222    3345777788888888888888888643211   


Q ss_pred             --------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-----HhcCChHHHHH-HHHHHH
Q 010320          259 --------PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGY-----AHSGNLPRMEK-IYELVK  323 (513)
Q Consensus       259 --------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~-~~~~~~  323 (513)
                              .=...|..=|..|....+-.+...+|++... ..-.|.+.... +|+-|     .+.|++++|.. +|+..+
T Consensus       181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK  259 (440)
T KOG1464|consen  181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK  259 (440)
T ss_pred             chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence                    1135677778888888888888888887654 22334443333 34433     46778887754 444444


Q ss_pred             h---ccCCCcH--HHHHHHHHHHHhcC
Q 010320          324 H---HVDGKEF--PLIRAMICAYSKCS  345 (513)
Q Consensus       324 ~---~~~~~~~--~~~~~li~~~~~~g  345 (513)
                      .   .|.+...  --|-.|.+++.+.|
T Consensus       260 NYDEsGspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  260 NYDESGSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             cccccCCcchhHHHHHHHHHHHHHHcC
Confidence            3   3432222  23445555666554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.93  E-value=5.5  Score=31.89  Aligned_cols=52  Identities=12%  Similarity=-0.049  Sum_probs=29.3

Q ss_pred             ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010320          168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      ..++.+++..+++.|.-..+.....-..-...+...|++++|+++|+++..+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            3666667777776666544432222222233345667777777777776653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.89  E-value=0.23  Score=28.46  Aligned_cols=32  Identities=19%  Similarity=0.334  Sum_probs=19.8

Q ss_pred             HHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          179 FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       179 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      |++..+..+.+..+|+.+...|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34444444446677777777777777776664

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.63  E-value=4.9  Score=32.03  Aligned_cols=75  Identities=9%  Similarity=-0.079  Sum_probs=40.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320          376 VYAKEDCLEEMEKSINDAFEHKTS-VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       376 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  450 (513)
                      ...+.|++++|.+.|+.+..+-.. +-....--.++.+|.+.+++++|...+++..+.....-..-|...+.+++.
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            344556666776666666553211 112223345666666777777777766666654433223335555555443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=91.56  E-value=8.4  Score=33.30  Aligned_cols=225  Identities=8%  Similarity=-0.064  Sum_probs=108.8

Q ss_pred             cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 010320          239 LLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRME  316 (513)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~  316 (513)
                      .+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            35555566666665543321 12456666667777777777777777666542 22334556666666666666777777


Q ss_pred             HHHHHHHhccCCCcHHHHHHHHH-HHHhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320          317 KIYELVKHHVDGKEFPLIRAMIC-AYSKCSVTDRIKKIEALMRLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAF  394 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  394 (513)
                      +.+.........+. ........ .+...|+++.+...+......... .............+...++.+.+...+.+..
T Consensus       116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            77776665433321 11111222 455566555555554443221111 0000101112222344556666666665555


Q ss_pred             hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       395 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      ...... ....+..+...+...++.+.+...+......... ....+..+...+...+..+++...+.+...
T Consensus       195 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         195 KLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             hhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            532211 2333444555555555555555555555433221 122222222233344455555555555544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.30  E-value=19  Score=36.78  Aligned_cols=87  Identities=14%  Similarity=0.053  Sum_probs=42.2

Q ss_pred             HhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010320          237 GRLLLVDHMEAAFQEIKD-------SNLSPNVFTYNYLIAGYMTAW-----MWGKVEEIYQMMKAGPVMPDTNTYLLLLR  304 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  304 (513)
                      +...+.+.|+..|+...+       .|   +....+-+..+|.+..     +.+.|..+|.+.-+.| .|+.......+.
T Consensus       260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~  335 (552)
T KOG1550|consen  260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLY  335 (552)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence            344566666666666654       33   2223444444444422     4455666666665555 234333332222


Q ss_pred             HHHh-cCChHHHHHHHHHHHhccC
Q 010320          305 GYAH-SGNLPRMEKIYELVKHHVD  327 (513)
Q Consensus       305 ~~~~-~g~~~~a~~~~~~~~~~~~  327 (513)
                      .... ..+...|.++|....+.|.
T Consensus       336 ~~g~~~~d~~~A~~yy~~Aa~~G~  359 (552)
T KOG1550|consen  336 ETGTKERDYRRAFEYYSLAAKAGH  359 (552)
T ss_pred             HcCCccccHHHHHHHHHHHHHcCC
Confidence            2222 2345566666666665553

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.11  E-value=0.58  Score=27.12  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHH
Q 010320          193 YNALLGAYMYNGLSDKCQSLFRD  215 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~  215 (513)
                      |+.|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            45555566666666666666655

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.77  E-value=6.8  Score=32.91  Aligned_cols=60  Identities=8%  Similarity=0.052  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320          406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLC--RSLYHSKMVMYASQRRVEEMESVLKEME  465 (513)
Q Consensus       406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~  465 (513)
                      +..+...|++.|+.+.|.+.+.++.+....+.  ...+-.+|......+++..+...+.+..
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44455555555555555555555554433222  2334444555555555555555554443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.72  E-value=8.4  Score=31.74  Aligned_cols=125  Identities=9%  Similarity=-0.013  Sum_probs=57.7

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHhcCcHH
Q 010320          343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI--VSSYFRCNAVD  420 (513)
Q Consensus       343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~  420 (513)
                      +.+..+++..++..+++..-.++.......+.......|+-..|...|+++-.....|.-..-...|  ...+..+|.++
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            3444555555555444433333332211123344455666666666666665543333211111111  11234455666


Q ss_pred             HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320          421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       421 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      +...-++-+...+-..-...-..|--+-.+.|++.+|.+.|..+...
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            55555554443333222333344444445666666666666665543

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.51  E-value=3.2  Score=37.52  Aligned_cols=99  Identities=11%  Similarity=0.106  Sum_probs=61.5

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN--ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY  266 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  266 (513)
                      ...+-..++..-....+++.+...+-+++....  ..|+.. -.+++..+. .-+.+.++.++..=++.|+-||..+++.
T Consensus        63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~  140 (418)
T KOG4570|consen   63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL  140 (418)
T ss_pred             ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence            455555555555556677777777777764310  112221 122333332 2356677777777777788888888888


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHc
Q 010320          267 LIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       267 li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +|+.+.+.+++.+|.++.-.|..
T Consensus       141 l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  141 LMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHH
Confidence            88888888888877777666554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.17  E-value=12  Score=32.74  Aligned_cols=84  Identities=10%  Similarity=0.014  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010320          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY  271 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  271 (513)
                      .|.-...+|-...++++|...+.+..+  +.+-|..-|.+       ...++.|.-+.++|.+..  --+..|+--...|
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfhA-------AKayEqaamLake~~kls--Evvdl~eKAs~lY  101 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFHA-------AKAYEQAAMLAKELSKLS--EVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHHH-------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence            344444555555666666555555442  22222222211       122344444455544321  1123344455555


Q ss_pred             HHccCHHHHHHHHHH
Q 010320          272 MTAWMWGKVEEIYQM  286 (513)
Q Consensus       272 ~~~g~~~~a~~~~~~  286 (513)
                      ...|..+.|--.+++
T Consensus       102 ~E~GspdtAAmaleK  116 (308)
T KOG1585|consen  102 VECGSPDTAAMALEK  116 (308)
T ss_pred             HHhCCcchHHHHHHH
Confidence            555555555444444

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.85  E-value=6.5  Score=29.08  Aligned_cols=74  Identities=9%  Similarity=0.083  Sum_probs=43.2

Q ss_pred             HHHHHHHHHccCHH--HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010320          265 NYLIAGYMTAWMWG--KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC  339 (513)
Q Consensus       265 ~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  339 (513)
                      +.--..|....+.|  +..+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.... +....|..+++
T Consensus        12 ~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq   87 (108)
T PF02284_consen   12 DARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred             HHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence            33333444434333  5566666666777888888888888888888888888888887776422 22225655543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.85  E-value=18  Score=34.25  Aligned_cols=54  Identities=17%  Similarity=0.121  Sum_probs=34.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ...+.-+.|+|+...+........  .++...|..+...  +.|+++++...++....
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~   57 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ   57 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence            356677888888855555555432  2355555555544  77888888887777654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK11906 transcriptional regulator; Provisional

Probab=89.53  E-value=19  Score=34.90  Aligned_cols=109  Identities=7%  Similarity=-0.021  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010320          383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                      ..+|.++-+...+.  .+.|......+..+....++++.|...|++....+.. ...+|......+.-.|+.++|.+.++
T Consensus       320 ~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        320 AQKALELLDYVSDI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45566666666663  3445555555666667777899999999988765522 23444444445566889999999998


Q ss_pred             HHHhCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHH
Q 010320          463 EMENYKIDCS---KKTFWIMYYAYATCGQRRKVNQVLG  497 (513)
Q Consensus       463 ~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~  497 (513)
                      +..+..  |.   .......++.|+..+ .+.|.+++-
T Consensus       397 ~alrLs--P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  431 (458)
T PRK11906        397 KSLQLE--PRRRKAVVIKECVDMYVPNP-LKNNIKLYY  431 (458)
T ss_pred             HHhccC--chhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence            866543  33   233334445666654 456666553

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=89.36  E-value=13  Score=31.92  Aligned_cols=161  Identities=15%  Similarity=0.169  Sum_probs=96.4

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI  233 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li  233 (513)
                      -+.+||-+.-.+...|+++.|.+.|+...+.++. +-...|.-|. +--.|+++.|.+=|.+.-+.   .|+..--...+
T Consensus        98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~LWL  173 (297)
T COG4785          98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD---DPNDPFRSLWL  173 (297)
T ss_pred             cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhc---CCCChHHHHHH
Confidence            4567888888889999999999999999887654 2222232232 33468899999888877764   23322222223


Q ss_pred             HHHHhcCChhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC------CCCHHHHHHHHHHH
Q 010320          234 SVFGRLLLVDHMEAAF-QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV------MPDTNTYLLLLRGY  306 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~p~~~t~~~ll~~~  306 (513)
                      -.--..-+..+|..-+ ++..+    .|..-|...|-.|--. ++ ....+++.++...-      +.=..||--|.+-+
T Consensus       174 Yl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLg-ki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~  247 (297)
T COG4785         174 YLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLG-KI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYY  247 (297)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHh-hc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            2233344566666543 33333    3555555544443321 11 11223333333110      01246888888999


Q ss_pred             HhcCChHHHHHHHHHHHhc
Q 010320          307 AHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~  325 (513)
                      ...|+.++|..+|+-.+..
T Consensus       248 l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         248 LSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             hccccHHHHHHHHHHHHHH
Confidence            9999999999999987765

>PRK11906 transcriptional regulator; Provisional

Probab=89.20  E-value=23  Score=34.46  Aligned_cols=159  Identities=11%  Similarity=0.015  Sum_probs=89.7

Q ss_pred             HHH--HHHHHHhccc-----CCHHHHHHHHHHHH---hccCCCHhHHHHHHHHHHH---------cCChHHHHHHHHHHH
Q 010320          157 EEY--TKGIKFAGRI-----NNVDLAADLFAEAA---NKHLKTIGTYNALLGAYMY---------NGLSDKCQSLFRDLK  217 (513)
Q Consensus       157 ~~~--~~ll~~~~~~-----g~~~~a~~~~~~m~---~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~  217 (513)
                      ..|  ...+.+....     -..+.|..+|++..   +..+.....|..+..++..         .....+|.++-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            455  5555554432     24567788888887   4333234555444433322         223455666666666


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCCC
Q 010320          218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMPD  295 (513)
Q Consensus       218 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~  295 (513)
                      +.  -.-|......+..+..-.++++.|...|++....+  || ..+|......+.-.|+.++|.+.+++..+. -.+.-
T Consensus       332 el--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        332 DI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             hc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence            43  24566677777777777777888888888877653  43 344544445555678888888888875542 11222


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHH
Q 010320          296 TNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       296 ~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      .......++.|+.. .++.|.+++-
T Consensus       408 ~~~~~~~~~~~~~~-~~~~~~~~~~  431 (458)
T PRK11906        408 AVVIKECVDMYVPN-PLKNNIKLYY  431 (458)
T ss_pred             HHHHHHHHHHHcCC-chhhhHHHHh
Confidence            23333334455543 3555655553

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=89.09  E-value=11  Score=30.73  Aligned_cols=50  Identities=14%  Similarity=0.122  Sum_probs=27.8

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320          237 GRLLLVDHMEAAFQEIKDSNLSPNV---FTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      .+.++.+++..+++-|.-.  .|..   .++..+  .+.+.|++++|..+|+++...
T Consensus        21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence            4455666666666666542  2332   222222  245566777777777776554

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.81  E-value=12  Score=30.87  Aligned_cols=20  Identities=15%  Similarity=0.147  Sum_probs=10.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHH
Q 010320          373 LIRVYAKEDCLEEMEKSIND  392 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~  392 (513)
                      ++..+...|++-+|.++.+.
T Consensus        95 iievLL~~g~vl~ALr~ar~  114 (167)
T PF07035_consen   95 IIEVLLSKGQVLEALRYARQ  114 (167)
T ss_pred             HHHHHHhCCCHHHHHHHHHH
Confidence            44445555555555555443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.50  E-value=2.5  Score=38.22  Aligned_cols=94  Identities=11%  Similarity=0.054  Sum_probs=62.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTS--VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  450 (513)
                      ++..-....+++.++..+-++......  .+....+ .+++. +-.-+.++++.++..=.+.|+-||..+++.+|+.+.+
T Consensus        70 ~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk  147 (418)
T KOG4570|consen   70 LVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLK  147 (418)
T ss_pred             hhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHh
Confidence            333333445677777766655543211  1111112 22332 2344677888888888889999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhCC
Q 010320          451 QRRVEEMESVLKEMENYK  468 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~~  468 (513)
                      .+++.+|..+.-.|....
T Consensus       148 ~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  148 KENYKDAASVVTEVMMQE  165 (418)
T ss_pred             cccHHHHHHHHHHHHHHH
Confidence            999999999888777654

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=88.42  E-value=8  Score=28.29  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010320          137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      ..++-..|...-+....|++.+..+.+++|-|.+++..|.++|+-++.+...+...|..+++
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq   84 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence            33444444444445567777777777777777777777777777666432223335555443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.19  E-value=13  Score=30.62  Aligned_cols=21  Identities=29%  Similarity=0.194  Sum_probs=9.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcCC
Q 010320          221 NISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       221 g~~p~~~~~~~li~~~~~~g~  241 (513)
                      |++|+...|..+++.+.+.|+
T Consensus        24 ~i~~~~~L~~lli~lLi~~~~   44 (167)
T PF07035_consen   24 NIPVQHELYELLIDLLIRNGQ   44 (167)
T ss_pred             CCCCCHHHHHHHHHHHHHcCC
Confidence            444444444444444444443

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.75  E-value=0.33  Score=39.22  Aligned_cols=84  Identities=10%  Similarity=0.120  Sum_probs=45.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010320          196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW  275 (513)
Q Consensus       196 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  275 (513)
                      ++..+.+.+..+....+++.+... +..-+....+.++..|++.++.+...++++..       +..-...++..|.+.|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG   84 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence            455555566666666666666643 33445566666666666666666666655521       1122334555555666


Q ss_pred             CHHHHHHHHHHH
Q 010320          276 MWGKVEEIYQMM  287 (513)
Q Consensus       276 ~~~~a~~~~~~m  287 (513)
                      .++++.-++.++
T Consensus        85 l~~~a~~Ly~~~   96 (143)
T PF00637_consen   85 LYEEAVYLYSKL   96 (143)
T ss_dssp             SHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHc
Confidence            666666555554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=87.39  E-value=22  Score=32.17  Aligned_cols=133  Identities=12%  Similarity=0.066  Sum_probs=88.5

Q ss_pred             cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHccCHHH
Q 010320          203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR-LL-LVDHMEAAFQEIK-DSNLSPNVFTYNYLIAGYMTAWMWGK  279 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~  279 (513)
                      +..+.+|+.+|+....+..+--|..+...+++.... .+ ....-.++.+-+. +.|-.++..+...++..+++.+++.+
T Consensus       141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k  220 (292)
T PF13929_consen  141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK  220 (292)
T ss_pred             hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence            344667777777332211355677777777777665 22 2222333444443 23456788888999999999999999


Q ss_pred             HHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHhccCCCcHHHHH
Q 010320          280 VEEIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL-----VKHHVDGKEFPLIR  335 (513)
Q Consensus       280 a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~  335 (513)
                      ..++++.-... +..-|...|...|+.....|+..-..++.++     +++.++..+...-.
T Consensus       221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~  282 (292)
T PF13929_consen  221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRS  282 (292)
T ss_pred             HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHH
Confidence            99999887665 5556888999999999999998777776654     34445554544433

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=87.20  E-value=19  Score=31.35  Aligned_cols=69  Identities=10%  Similarity=0.105  Sum_probs=39.7

Q ss_pred             HHhcCcHHHHHHHHHHHHh-cCC-----------cccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010320          413 YFRCNAVDKLANFVKRAES-AGW-----------RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY  480 (513)
Q Consensus       413 ~~~~~~~~~a~~~~~~~~~-~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li  480 (513)
                      +...|++.+|+.-+..-.. .|.           .|.+.....++..| ..+++++|.+++.++-+.|+.|.- ..+.+.
T Consensus       202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~F  279 (333)
T KOG0991|consen  202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED-IITTLF  279 (333)
T ss_pred             hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHH
Confidence            4457777777777665321 111           24555555555444 346778888888887777776543 233444


Q ss_pred             HHH
Q 010320          481 YAY  483 (513)
Q Consensus       481 ~~~  483 (513)
                      +.+
T Consensus       280 Rv~  282 (333)
T KOG0991|consen  280 RVV  282 (333)
T ss_pred             HHH
Confidence            443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.00  E-value=7.3  Score=38.67  Aligned_cols=45  Identities=9%  Similarity=0.017  Sum_probs=22.4

Q ss_pred             HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320          273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      +.|+++.|.++..+..      +..-|..|.++....+++..|.+.|....
T Consensus       649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~  693 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR  693 (794)
T ss_pred             hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence            4455555555444332      33345555555555555555555554433

>PF14669 Asp_Glu_race_2: Putative aspartate racemase

Probab=86.83  E-value=17  Score=30.44  Aligned_cols=55  Identities=9%  Similarity=0.094  Sum_probs=33.0

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcCCc--------------ccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010320          408 CIVSSYFRCNAVDKLANFVKRAESAGWR--------------LCRSLYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       408 ~li~~~~~~~~~~~a~~~~~~~~~~~~~--------------p~~~~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                      +++..|.+..++.++.++++.|.+..+.              +--...|.-...|.+.|.+|.|..+++
T Consensus       137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr  205 (233)
T PF14669_consen  137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR  205 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence            4566677777888888877777554322              222334555555566666666666655

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=86.81  E-value=19  Score=30.94  Aligned_cols=27  Identities=15%  Similarity=0.161  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010320          405 IMRCIVSSYFRCNAVDKLANFVKRAES  431 (513)
Q Consensus       405 ~~~~li~~~~~~~~~~~a~~~~~~~~~  431 (513)
                      ||--+..-+...|+.++|..+|+-...
T Consensus       239 tyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         239 TYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            344455555555555555555555443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=86.66  E-value=8.9  Score=28.38  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=34.3

Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010320          139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       139 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      ++-..|...-+..+.|++.+..+.+++|.|.+++..|.++|+-++.+-......|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence            344444444455577777777777788878888888888877776543322225555554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=86.47  E-value=0.98  Score=25.80  Aligned_cols=24  Identities=8%  Similarity=0.083  Sum_probs=15.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCHhHHH
Q 010320          470 DCSKKTFWIMYYAYATCGQRRKVN  493 (513)
Q Consensus       470 ~p~~~~~~~li~~~~~~g~~~~A~  493 (513)
                      +-|...|..+...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            345666666666666666666664

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=86.32  E-value=7.9  Score=28.31  Aligned_cols=46  Identities=13%  Similarity=0.186  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010320          279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      ++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+-++.
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~   70 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD   70 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4555555555666777777777777777777777777777776664

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=86.21  E-value=24  Score=36.24  Aligned_cols=93  Identities=11%  Similarity=0.026  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC-CC-------HhHHHHHHHHHHHcCC
Q 010320          134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KT-------IGTYNALLGAYMYNGL  205 (513)
Q Consensus       134 ~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~-------~~~~~~li~~~~~~g~  205 (513)
                      +++-...++.|+++-......+..+...++-.|....+++...++.+.++...- -+       ...|.-.++---+-|+
T Consensus       179 G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GD  258 (1226)
T KOG4279|consen  179 GDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGD  258 (1226)
T ss_pred             cHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCcc
Confidence            344445666666664444445666666777777777777777777777665310 01       1123333333334466


Q ss_pred             hHHHHHHHHHHHHh-CCCCCCH
Q 010320          206 SDKCQSLFRDLKKE-ANISPSI  226 (513)
Q Consensus       206 ~~~A~~~~~~m~~~-~g~~p~~  226 (513)
                      -++|+++.-.|.+. +.+.||.
T Consensus       259 RakAL~~~l~lve~eg~vapDm  280 (1226)
T KOG4279|consen  259 RAKALNTVLPLVEKEGPVAPDM  280 (1226)
T ss_pred             HHHHHHHHHHHHHhcCCCCCce
Confidence            67777766655543 2345554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.15  E-value=43  Score=34.25  Aligned_cols=150  Identities=11%  Similarity=-0.011  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHhccCCCHhHHHHHH--HH-HHHcCChHHHHHHHHHHHH-------hCCCCCCHHHHHHHHHHHHhcC-
Q 010320          172 VDLAADLFAEAANKHLKTIGTYNALL--GA-YMYNGLSDKCQSLFRDLKK-------EANISPSIVTYNTLISVFGRLL-  240 (513)
Q Consensus       172 ~~~a~~~~~~m~~~~~~~~~~~~~li--~~-~~~~g~~~~A~~~~~~m~~-------~~g~~p~~~~~~~li~~~~~~g-  240 (513)
                      ...|.++++.....|.......-.++  .+ +....+.+.|+.+|+...+       + |   +....+-+..+|.+.. 
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHhcCCC
Confidence            56788888888877643222222222  22 4567789999999998866       3 3   3345666777776643 


Q ss_pred             ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--hcCChH
Q 010320          241 ----LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA--HSGNLP  313 (513)
Q Consensus       241 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~  313 (513)
                          +.+.|..++.+.-+.|. |+....-..+.-... ..+...|.++|...-+.|.. +..-+..++....  -..+.+
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence                56779999988888775 454433222222222 24678999999999888733 2222222222222  233678


Q ss_pred             HHHHHHHHHHhccC
Q 010320          314 RMEKIYELVKHHVD  327 (513)
Q Consensus       314 ~a~~~~~~~~~~~~  327 (513)
                      .|..++++..+.|.
T Consensus       382 ~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  382 LAFAYYKKAAEKGN  395 (552)
T ss_pred             HHHHHHHHHHHccC
Confidence            88888888888773

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.05  E-value=2.1  Score=25.41  Aligned_cols=27  Identities=15%  Similarity=0.126  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          474 KTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       474 ~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      .+++.|...|...|++++|.+++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            456677777777777777777777653

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.68  E-value=2.5  Score=23.75  Aligned_cols=29  Identities=10%  Similarity=0.115  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          474 KTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .+|..+..+|...|++++|++.|++.++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            46777788888888888888888877653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.68  E-value=21  Score=30.21  Aligned_cols=95  Identities=7%  Similarity=0.102  Sum_probs=64.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTT-VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  450 (513)
                      .+...+...+++++|+..++..+.......- ..+=-.|.......|.+|.|+..++.....++.+  .....--+.+..
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~  171 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLA  171 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHH
Confidence            3567788889999999988877653221111 1111224456677889999999988777666543  222334567888


Q ss_pred             cCCHHHHHHHHHHHHhCC
Q 010320          451 QRRVEEMESVLKEMENYK  468 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~~  468 (513)
                      .|+-++|..-|+...+.+
T Consensus       172 kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         172 KGDKQEARAAYEKALESD  189 (207)
T ss_pred             cCchHHHHHHHHHHHHcc
Confidence            899999999998888765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.89  E-value=3.6  Score=23.10  Aligned_cols=27  Identities=19%  Similarity=0.269  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320          192 TYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      +|..+...|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455555555555555555555555553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=84.30  E-value=20  Score=28.83  Aligned_cols=54  Identities=4%  Similarity=0.003  Sum_probs=35.5

Q ss_pred             cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010320          344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS  399 (513)
Q Consensus       344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  399 (513)
                      .++.++++.++..++-+.++.....+  .-.-.+...|++++|.++|+++.+.+..
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~--~dg~l~i~rg~w~eA~rvlr~l~~~~~~   76 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDM--FDGWLLIARGNYDEAARILRELLSSAGA   76 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccch--hHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence            56667777777777766665554443  2344456778888888888887776544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=84.29  E-value=56  Score=34.03  Aligned_cols=116  Identities=9%  Similarity=0.044  Sum_probs=61.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHH
Q 010320          381 DCLEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME  458 (513)
Q Consensus       381 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  458 (513)
                      .+.+.|..++...........  ...+...+.......+...++.+.+.......  .+......-+....+.++++.+.
T Consensus       255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~  332 (644)
T PRK11619        255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN  332 (644)
T ss_pred             hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence            345777777776544322211  12223333333333322445555555433222  23344455555555788888888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320          459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      ..+..|.... .-...-.--+.+++...|+.++|..+|++.
T Consensus       333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~  372 (644)
T PRK11619        333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL  372 (644)
T ss_pred             HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7777775432 223333335667767778888888888775

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.70  E-value=2.8  Score=24.81  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHH
Q 010320          263 TYNYLIAGYMTAWMWGKVEEIYQMM  287 (513)
Q Consensus       263 ~~~~li~~~~~~g~~~~a~~~~~~m  287 (513)
                      +++.|...|...|++++|.+++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            3444444444444444444444443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.53  E-value=4.4  Score=22.59  Aligned_cols=27  Identities=19%  Similarity=0.189  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320          192 TYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      .|..+...+...|++++|++.|++..+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            344555555555666666665555553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.48  E-value=3.6  Score=22.98  Aligned_cols=28  Identities=11%  Similarity=0.186  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          474 KTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      ..|..+...+...|++++|++.|++..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3566777788888888888888887764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.01  E-value=34  Score=30.52  Aligned_cols=202  Identities=14%  Similarity=0.095  Sum_probs=113.0

Q ss_pred             CCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHc---CCCC
Q 010320          221 NISPSIVTYNTLISVF-GRLLLVDHMEAAFQEIKDSNLSPNV---FTYNYLIAGYMTAWMWGKVEEIYQMMKA---GPVM  293 (513)
Q Consensus       221 g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~  293 (513)
                      +-.||+..=|..-..- .+...+++|+.-|++..+..-+...   ...--+|..+.+.|++++..+.|.+|..   ..+.
T Consensus        21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT  100 (440)
T KOG1464|consen   21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT  100 (440)
T ss_pred             CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence            4467765444322221 2344788899999888875332233   3344567888888999999988888764   1121


Q ss_pred             --CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCcH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc
Q 010320          294 --PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VDGKEF----PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR  366 (513)
Q Consensus       294 --p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  366 (513)
                        -+..+.++++.-.....+.+.-.++++.-.+. .-..+.    .|-+.|...|...|.+.+..++++.+......+-.
T Consensus       101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG  180 (440)
T KOG1464|consen  101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG  180 (440)
T ss_pred             ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence              23556677777776666666655555432221 000111    12345666677777777777776666544322111


Q ss_pred             c----------chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH-----hcCcHHHHH
Q 010320          367 P----------WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF-----RCNAVDKLA  423 (513)
Q Consensus       367 ~----------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~~~~~~a~  423 (513)
                      .          -+|++-|..|....+-.....++++.+.-....|.+.+ ..+|+-|.     +.|.+++|.
T Consensus       181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~Ah  251 (440)
T KOG1464|consen  181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAH  251 (440)
T ss_pred             chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHH
Confidence            1          12445566666666666666777766654444444433 33444432     345666654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.26  E-value=20  Score=35.79  Aligned_cols=151  Identities=13%  Similarity=0.052  Sum_probs=88.2

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010320          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME  246 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~  246 (513)
                      .-.|+++.|..++..+++      ..-+.+...+-+.|..++|+++-.          |...   -.....+.|+++.|.
T Consensus       597 vmrrd~~~a~~vLp~I~k------~~rt~va~Fle~~g~~e~AL~~s~----------D~d~---rFelal~lgrl~iA~  657 (794)
T KOG0276|consen  597 VLRRDLEVADGVLPTIPK------EIRTKVAHFLESQGMKEQALELST----------DPDQ---RFELALKLGRLDIAF  657 (794)
T ss_pred             hhhccccccccccccCch------hhhhhHHhHhhhccchHhhhhcCC----------Chhh---hhhhhhhcCcHHHHH
Confidence            345677777666555542      244556666667777777765422          2211   112234567777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010320          247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                      ++..+..      +..-|..|.++....|++..|.+.|.....         |..|+-.+...|+-+....+-....+.|
T Consensus       658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g  722 (794)
T KOG0276|consen  658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG  722 (794)
T ss_pred             HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence            7665542      556677777777778888877777766544         4566666666777665555555556655


Q ss_pred             CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010320          327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI  360 (513)
Q Consensus       327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  360 (513)
                      ..      |.-..+|...|++++   +.+++.+.
T Consensus       723 ~~------N~AF~~~~l~g~~~~---C~~lLi~t  747 (794)
T KOG0276|consen  723 KN------NLAFLAYFLSGDYEE---CLELLIST  747 (794)
T ss_pred             cc------chHHHHHHHcCCHHH---HHHHHHhc
Confidence            42      222335666676554   44444443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.72  E-value=70  Score=33.24  Aligned_cols=64  Identities=9%  Similarity=-0.091  Sum_probs=37.9

Q ss_pred             HhcCcHHHHHHHHHHHHhcCCc-cc-----HhhHHHHHH--HHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHH
Q 010320          414 FRCNAVDKLANFVKRAESAGWR-LC-----RSLYHSKMV--MYASQRRVEEMESVLK--------EMENYKIDCSKKTFW  477 (513)
Q Consensus       414 ~~~~~~~~a~~~~~~~~~~~~~-p~-----~~~~~~li~--~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~  477 (513)
                      +-.+++..|...++.|.+..-. |+     ...+..++.  .+-..|+.+.|...|.        .....+...+..++.
T Consensus       372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila  451 (608)
T PF10345_consen  372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA  451 (608)
T ss_pred             HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence            3468888899999888643211 11     112222222  2335799999999997        445555554444444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=80.69  E-value=35  Score=29.19  Aligned_cols=58  Identities=14%  Similarity=0.096  Sum_probs=30.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA  432 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  432 (513)
                      +...+...+.++.|...+.........  ....+..+...+...+..+.+...+......
T Consensus       208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         208 LGLLYLKLGKYEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445555555666666666665553222  1222333333444555677777666666543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=80.42  E-value=67  Score=32.25  Aligned_cols=114  Identities=9%  Similarity=-0.050  Sum_probs=53.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--cccHhhHHHHHHHHHhc
Q 010320          374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW--RLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~  451 (513)
                      +..-...|+.+.+.-+|+.....  ...-...|-..+.-....|+.+.|..++....+.-.  .|......+.+  .-..
T Consensus       304 Ldf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~  379 (577)
T KOG1258|consen  304 LDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESN  379 (577)
T ss_pred             hhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhh
Confidence            34444556666666555554331  111122233334444444666666666665543322  23333333222  2235


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHhHHH
Q 010320          452 RRVEEMESVLKEMENYKIDCSKKT-FWIMYYAYATCGQRRKVN  493 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~  493 (513)
                      |++..|..+++.+.+.-  |+..- -..-+....+.|+.+.+.
T Consensus       380 ~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  380 GNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             ccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence            67777777777776542  43321 112233344566666665

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.32  E-value=3.5  Score=25.23  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=14.1

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          479 MYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       479 li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      |..+|...|+.+.|.+++++....
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Confidence            445566666666666666665543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=80.10  E-value=21  Score=30.40  Aligned_cols=72  Identities=10%  Similarity=-0.078  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHHhcCChHHH
Q 010320          243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA---GPVMPDTNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~a  315 (513)
                      +.|.+.|-++...+..-+....-.|...|. ..+.+++++++....+   .+-.+|+..+.+|...+.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            344444544444443333333333333333 3345555555554433   12244555555555555555555544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=80.09  E-value=5.5  Score=22.25  Aligned_cols=27  Identities=7%  Similarity=0.154  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          475 TFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       475 ~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      +|..+...|...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            566677777777777777777776654

...

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=80.09  E-value=1.6  Score=35.23  Aligned_cols=83  Identities=11%  Similarity=0.151  Sum_probs=49.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC
Q 010320          302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED  381 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  381 (513)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.+++.+   .+...  .+....   .++..|.+.|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~---~L~~~--~~yd~~---~~~~~c~~~~   84 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLE---FLKTS--NNYDLD---KALRLCEKHG   84 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHH---TTTSS--SSS-CT---HHHHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHH---Hcccc--cccCHH---HHHHHHHhcc
Confidence            455566677777777788887766655677778888888888775554333   23211  112222   3566666666


Q ss_pred             CHHHHHHHHHH
Q 010320          382 CLEEMEKSIND  392 (513)
Q Consensus       382 ~~~~a~~~~~~  392 (513)
                      .+++|.-++.+
T Consensus        85 l~~~a~~Ly~~   95 (143)
T PF00637_consen   85 LYEEAVYLYSK   95 (143)
T ss_dssp             SHHHHHHHHHC
T ss_pred             hHHHHHHHHHH
Confidence            66666655543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	513
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 66.8 bits (161), Expect = 9e-12
 Identities = 31/244 (12%), Positives = 67/244 (27%), Gaps = 15/244 (6%)

Query: 134 PRLALEVLNWRRRQAGYGTPMTK-------EEYTKGIKFAGRINNVDLAADLFAEAANKH 186
             L  +    + R       +         +  T+ ++   R+ +  +A  L        
Sbjct: 28  KILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAP 87

Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVD 243
                   A L       LS   +        +A +S                 +L L  
Sbjct: 88  ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147

Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
           H+       +       +  YN ++ G+     + ++  +  M+K   + PD  +Y   L
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207

Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
           +            +            +  L    +      S  DR   ++A+ ++ P  
Sbjct: 208 QCMGRQDQDAGTIERC-----LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262

Query: 364 EYRP 367
              P
Sbjct: 263 SLPP 266

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 70/510 (13%), Positives = 147/510 (28%), Gaps = 115/510 (22%)

Query: 76  RVRKDLTQTVSALRDELLANVDDLDK--VFRV--LDEKGSCLFRRHSNGYAFVELMKQLG 131
           R    +T+     RD L  +     K  V R+    +    L          ++ +   G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI-----NNVDLAADLFAEAANKH 186
            +  +AL+V    + Q                K   +I      N +    +        
Sbjct: 163 -KTWVALDVCLSYKVQ---------------CKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 187 LKTIGTYNALL-GAYMYNGLSDKCQSLFRDLKKEANISPSI-----VTYNTLISVFG--- 237
            +    + +    +          Q+  R L K       +     V      + F    
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 238 RLLL-------VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKA 289
           ++LL        D + AA       +      T + +    +  ++  + +++  +++  
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTT 325

Query: 290 GPV-----------MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
            P               T         + H       +K+  +++  ++  E    R M 
Sbjct: 326 NPRRLSIIAESIRDGLATWDN------WKHVNC----DKLTTIIESSLNVLEPAEYRKM- 374

Query: 339 CAYSKCSVTDRIKKIEA--LMRL---IPEKEYRPWLNVL----LIRVYAKE------DC- 382
             + + SV      I    L  +   + + +    +N L    L+    KE         
Sbjct: 375 --FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK-LANFV----KRAESAG-WRL 436
           LE   K  N+   H++ V    I +   S       +D+   + +    K  E      L
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 437 CRSLY-----------HSKMVMYASQRRVEEMESVLKEMENYK--IDCSKKTFWIMYYAY 483
            R ++           H      AS      + + L++++ YK  I  +   +  +  A 
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASG----SILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 484 ----ATCGQ---RRKVNQVL--GLMCKNGY 504
                   +     K   +L   LM ++  
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEA 578

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	513
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.98
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.84
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.83
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.79
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.78
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.76
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.74
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.73
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.73
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.71
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.71
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.71
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.65
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.62
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.61
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.61
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.59
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.57
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.57
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.56
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.54
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.53
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.53
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.53
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.52
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.51
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.51
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.51
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.5
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.49
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.49
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.49
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.48
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.48
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.47
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.47
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.45
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.43
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.4
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.39
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.38
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.37
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.36
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.36
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.35
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.33
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.32
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.31
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.31
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.3
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.29
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.27
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.27
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.18
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.18
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.17
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.16
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.14
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.1
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.02
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.0
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.97
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.97
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.95
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.95
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.93
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.93
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.9
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.88
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.87
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.87
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.86
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.83
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.83
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.8
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.76
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.75
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.75
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.75
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.75
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.74
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.74
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.72
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.7
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.7
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.69
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.68
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.68
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.65
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.64
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.61
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.6
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.59
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.58
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.57
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.56
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.54
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.54
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.52
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.51
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.51
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.5
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.49
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.49
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.45
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.45
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.44
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.44
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.44
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.43
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.42
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.42
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.41
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.39
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.38
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.36
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.35
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.35
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.35
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.3
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.28
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.27
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.26
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.25
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.24
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.23
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.21
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.21
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.21
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.19
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.18
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.17
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.15
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.12
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.1
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.07
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.07
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.03
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.02
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.99
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.97
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.95
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.92
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.88
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.83
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.82
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.77
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.74
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.71
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.71
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.7
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.68
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.67
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.67
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.63
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.56
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.55
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.53
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.5
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.48
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.4
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.39
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.32
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.3
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.25
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.18
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.08
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.83
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.75
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.71
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.68
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.52
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.47
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.45
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.29
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.23
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.22
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.15
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.95
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.91
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.73
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.65
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.5
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.45
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.31
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.27
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.26
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.77
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.49
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.34
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.3
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.85
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.8
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	92.53
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.33
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.29
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.15
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.71
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.87
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.81
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.78
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.46
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.13
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.58
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	88.02
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	87.97
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	84.82
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	83.68
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	83.59
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	81.41
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	81.31
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.5
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	80.41
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	80.23

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-33  Score=286.78  Aligned_cols=400  Identities=9%  Similarity=-0.070  Sum_probs=296.4

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 010320           85 VSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKG  162 (513)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~l  162 (513)
                      +..++..+ .+.++..++...+.++.    +..|+..++..+...+  .++.+.|..+|+.+..     .+++..+++.+
T Consensus        87 ~~~~~~~~-~~~g~~~~A~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~l  156 (597)
T 2xpi_A           87 LRLWRHDA-LMQQQYKCAAFVGEKVL----DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-----YNRSSACRYLA  156 (597)
T ss_dssp             HHHHHHHH-HHTTCHHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-----GGTCHHHHHHH
T ss_pred             HHHHHHHH-HHccCchHHHHHHHHHH----hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-----cccchhHHHHH
Confidence            34444444 33455566666665553    3356667777666666  4577778888776533     35678888888


Q ss_pred             HHHhcccCCHHHHHHHHHHHHhc---------------cCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----
Q 010320          163 IKFAGRINNVDLAADLFAEAANK---------------HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN-----  221 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~---------------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-----  221 (513)
                      +.+|.+.|++++|.++|+++...               +.+ +..+|+.++.+|.+.|++++|+++|++|.+...     
T Consensus       157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  236 (597)
T 2xpi_A          157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA  236 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence            88888888888888888843222               122 477888888888888888888888888765310     


Q ss_pred             ----------------------------------------------------------------CCCCHHHHHHHHHHHH
Q 010320          222 ----------------------------------------------------------------ISPSIVTYNTLISVFG  237 (513)
Q Consensus       222 ----------------------------------------------------------------~~p~~~~~~~li~~~~  237 (513)
                                                                                      .++|..+|+.++.+|.
T Consensus       237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  316 (597)
T 2xpi_A          237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF  316 (597)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence                                                                            0256666777777777


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010320          238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK  317 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~  317 (513)
                      +.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|++|.+.. ..+..+|+.++.+|.+.|++++|.+
T Consensus       317 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  394 (597)
T 2xpi_A          317 VRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR  394 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence            77777777777777776543 256667777777777777777777777776432 3457888888888888888888888


Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010320          318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK  397 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  397 (513)
                      +|+++.+.. +.+..+|+.++.+|.+.|++++|.+.++.+.+....+...+.  .++.+|.+.|++++|.++|+++.+..
T Consensus       395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~  471 (597)
T 2xpi_A          395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL--FLGMQHMQLGNILLANEYLQSSYALF  471 (597)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            888887752 346778888888888888888888887777666655554442  58888888899999999998888743


Q ss_pred             CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010320          398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRLC--RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC  471 (513)
Q Consensus       398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  471 (513)
                        +.+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.++|+++.+.+ +.
T Consensus       472 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~  548 (597)
T 2xpi_A          472 --QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN  548 (597)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred             --CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence              445677888888999999999999998888765    55676  6788888899999999999999998888766 55


Q ss_pred             CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          472 SKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       472 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      +..+|..+..+|.+.|++++|.++|+++.+.
T Consensus       549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          549 DANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            7888888999999999999999999888764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.2e-33  Score=283.84  Aligned_cols=373  Identities=9%  Similarity=-0.088  Sum_probs=300.5

Q ss_pred             CchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH
Q 010320          118 SNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA  195 (513)
Q Consensus       118 p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  195 (513)
                      ++...|..++..+  .++++.|..+|+.+..     ..|+..++..++.+|.+.|++++|..+|+.+... .++..+++.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~  155 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD-----ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYL  155 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHh-----hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHH
Confidence            5778889999887  4688999999999875     4468899999999999999999999999998643 248899999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---
Q 010320          196 LLGAYMYNGLSDKCQSLFRDLKKEA--------------NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS---  258 (513)
Q Consensus       196 li~~~~~~g~~~~A~~~~~~m~~~~--------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---  258 (513)
                      ++.+|.+.|++++|+++|+++....              |..++..+|+.++.+|.+.|++++|.++|++|.+.+..   
T Consensus       156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  235 (597)
T 2xpi_A          156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE  235 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence            9999999999999999999643221              23446899999999999999999999999999765421   


Q ss_pred             -------------------------------------------------------------------CCHHHHHHHHHHH
Q 010320          259 -------------------------------------------------------------------PNVFTYNYLIAGY  271 (513)
Q Consensus       259 -------------------------------------------------------------------p~~~~~~~li~~~  271 (513)
                                                                                         ++..+|+.++.+|
T Consensus       236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  315 (597)
T 2xpi_A          236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL  315 (597)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence                                                                               4566667777777


Q ss_pred             HHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010320          272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK  351 (513)
Q Consensus       272 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  351 (513)
                      .+.|++++|.++|++|.+.+ ..+..++..++.++.+.|++++|.++++++.+. .+.+..+++.++.+|.+.|++++|.
T Consensus       316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~  393 (597)
T 2xpi_A          316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEAR  393 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHH
Confidence            77777777777777776543 225566777777777777777777777777654 3457788888999999999998888


Q ss_pred             HHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010320          352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES  431 (513)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  431 (513)
                      +.++.+.++.+.+...|.  .++.+|.+.|++++|+++|+++.+..  +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus       394 ~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  469 (597)
T 2xpi_A          394 RYFSKSSTMDPQFGPAWI--GFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA  469 (597)
T ss_dssp             HHHHHHHHHCTTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            887777666555555553  58889999999999999999988743  44566788899999999999999999999887


Q ss_pred             cCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY----KIDCS--KKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       432 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ... .+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus       470 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          470 LFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS  546 (597)
T ss_dssp             HCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            653 36788999999999999999999999988776    66777  7889999999999999999999999988764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1e-32  Score=271.39  Aligned_cols=204  Identities=13%  Similarity=0.130  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHcCCCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCC---------
Q 010320          137 ALEVLNWRRRQAGYGTPMT-KEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGL---------  205 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~---------  205 (513)
                      +..+.+.+.+..   .... ...++.+|.+|++.|++++|+++|++|.+.|+ ||..+||+||.+|++.+.         
T Consensus         9 ~e~L~~~~~~k~---~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~   85 (501)
T 4g26_A            9 SENLSRKAKKKA---IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG   85 (501)
T ss_dssp             ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred             HHHHHHHHHHhc---ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence            334444444332   3333 34688999999999999999999999999999 599999999999998765         


Q ss_pred             hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 010320          206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ  285 (513)
Q Consensus       206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~  285 (513)
                      +++|.++|++|... |+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|+
T Consensus        86 l~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           86 LSRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence            68899999999986 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010320          286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC  344 (513)
Q Consensus       286 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  344 (513)
                      +|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus       165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999998864

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.98  E-value=4.1e-31  Score=259.93  Aligned_cols=180  Identities=16%  Similarity=0.131  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------
Q 010320          173 DLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL---------  241 (513)
Q Consensus       173 ~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~---------  241 (513)
                      ..+..+.+++.+++..  +...++.+|.+|++.|++++|+++|++|.+. |++||..|||+||.+|++.+.         
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~   85 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPG   85 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence            4456666777777764  3456899999999999999999999999987 999999999999999998765         


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010320          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL  321 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  321 (513)
                      ++.|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 010320          322 VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI  353 (513)
Q Consensus       322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  353 (513)
                      |.+.|+.||..+|++||.+|++.|++++|.++
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~l  197 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKT  197 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHH
Confidence            99999999999999887777777655544333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=1.8e-25  Score=215.65  Aligned_cols=357  Identities=10%  Similarity=-0.061  Sum_probs=300.9

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++.+.|.+.+..+.+.    .|.+...+..+...+.+.|++++|...++...+..+.+..+|..+...|.+.|++++|+
T Consensus        12 ~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~   87 (388)
T 1w3b_A           12 AGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI   87 (388)
T ss_dssp             HTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            56888899888877664    24466777888888899999999999999988877678999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320          211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      +.|+++.+.  .+.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.++|+++.+.
T Consensus        88 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  164 (388)
T 1w3b_A           88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            999999864  2345668999999999999999999999999886432 4567777888888899999999999999874


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010320          291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN  370 (513)
Q Consensus       291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  370 (513)
                      . .-+..+|..+...+...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...++......+.+...+  
T Consensus       165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--  240 (388)
T 1w3b_A          165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH--  240 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH--
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH--
Confidence            3 2247899999999999999999999999998864 44677888999999999999998888776666655544444  


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320          371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  450 (513)
                      ..+...|...|++++|++.|+++++.  .|.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence            25888999999999999999999884  34456678999999999999999999999998765 4477889999999999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .|++++|...++++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.
T Consensus       318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999998764 556888999999999999999999999999864

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=7.2e-24  Score=204.46  Aligned_cols=356  Identities=10%  Similarity=0.040  Sum_probs=299.5

Q ss_pred             cCchhHHHHHHHH---HcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHH
Q 010320          117 HSNGYAFVELMKQ---LGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY  193 (513)
Q Consensus       117 ~p~~~~~~~~l~~---~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  193 (513)
                      .|+.......+..   -.++.+.|..+++...+.    .+.+..+|..+..+|.+.|++++|.+.|+++.+..+.+..+|
T Consensus        29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  104 (388)
T 1w3b_A           29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY  104 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHH
Confidence            4554433333333   367889999999877764    356889999999999999999999999999998876688899


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010320          194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM  272 (513)
Q Consensus       194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  272 (513)
                      ..+..++.+.|++++|++.|+++.+.   .|+ ...+..+...+...|++++|.+.|+++.+... -+..+|+.+...+.
T Consensus       105 ~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~  180 (388)
T 1w3b_A          105 INLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFN  180 (388)
T ss_dssp             HHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            99999999999999999999999975   354 56778888999999999999999999998643 36789999999999


Q ss_pred             HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHH
Q 010320          273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK  352 (513)
Q Consensus       273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  352 (513)
                      +.|++++|.+.|+++.+.+ .-+...|..+...+...|++++|...+++..+.. +.+..++..+...|.+.|++++|.+
T Consensus       181 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~  258 (388)
T 1w3b_A          181 AQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAID  258 (388)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999998843 2247889999999999999999999999988863 3467889999999999999999988


Q ss_pred             HHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 010320          353 IEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA  432 (513)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  432 (513)
                      .++...+..+.....+  ..+...+.+.|++++|.+.|+++.+.  .|.+..++..+...+...|++++|.+.++++.+.
T Consensus       259 ~~~~al~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  334 (388)
T 1w3b_A          259 TYRRAIELQPHFPDAY--CNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV  334 (388)
T ss_dssp             HHHHHHHTCSSCHHHH--HHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            8887777665544444  35889999999999999999999985  4556778999999999999999999999999865


Q ss_pred             CCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320          433 GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ  488 (513)
Q Consensus       433 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  488 (513)
                      . +.+..++..+...|.+.|++++|...|+++.+.. +-+...|..+...+...|+
T Consensus       335 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          335 F-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred             C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence            4 3357789999999999999999999999999764 4457778777777766553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=1.2e-21  Score=192.74  Aligned_cols=339  Identities=9%  Similarity=0.001  Sum_probs=247.3

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      +.+...+..+...+.+.|++++|.++|+++.+..+.+..+|..+..+|...|++++|+..|+++.+.  .+.+..++..+
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l  100 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQR  100 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence            3356677777777888888888888888877766557778888888888888888888888887764  23456777788


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCC-H---HHHHHHH------------HHHHHccCHHHHHHHHHHHHcCCCCCCH
Q 010320          233 ISVFGRLLLVDHMEAAFQEIKDSNLSPN-V---FTYNYLI------------AGYMTAWMWGKVEEIYQMMKAGPVMPDT  296 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~g~~p~~  296 (513)
                      ..++.+.|++++|...|+++.+..  |+ .   ..+..+.            ..+.+.|++++|+++|+++.+.. ..+.
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~  177 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA  177 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence            888888888888888888887653  33 3   4555443            33777888888888888877643 2357


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH------
Q 010320          297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN------  370 (513)
Q Consensus       297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------  370 (513)
                      .++..+..+|.+.|++++|.++|+++.+.. +.+..++..+...|...|++++|...++......+.....+..      
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK  256 (450)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            777888888888888888888888877653 3466777788888888888887777766665554443333210      


Q ss_pred             ----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHH
Q 010320          371 ----VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT--VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK  444 (513)
Q Consensus       371 ----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  444 (513)
                          ..+...+...|++++|.+.|++++......+.  ...+..+...+.+.|++++|.+.++++.+.. +.+...|..+
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l  335 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence                01378889999999999999999885433222  3468888999999999999999999987654 2367889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhcC-----CHhHHHHHHHHH
Q 010320          445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA------------YATCG-----QRRKVNQVLGLM  499 (513)
Q Consensus       445 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m  499 (513)
                      ..+|...|++++|...|+++.+.. +-+...+..+..+            |...|     +.+++.+.++++
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~  406 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL  406 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence            999999999999999999998754 3355666666633            33344     556677777763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=2.2e-21  Score=190.91  Aligned_cols=318  Identities=8%  Similarity=-0.062  Sum_probs=258.5

Q ss_pred             HHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010320          174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  253 (513)
                      .+...+.+.....+.+...|..+...+.+.|++++|+.+|+++.+.  .+.+..+|..+..++...|++++|+..|+++.
T Consensus        10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A           10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3444555555554558899999999999999999999999999975  35678999999999999999999999999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH----HHHHHH------------HHHHHhcCChHHHHH
Q 010320          254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT----NTYLLL------------LRGYAHSGNLPRMEK  317 (513)
Q Consensus       254 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~  317 (513)
                      +.+. .+..+|..+..+|.+.|++++|.+.|+++.+.  .|+.    ..+..+            ...+...|++++|..
T Consensus        88 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  164 (450)
T 2y4t_A           88 QLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA  164 (450)
T ss_dssp             HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8754 36889999999999999999999999999984  4553    555555            444889999999999


Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010320          318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK  397 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  397 (513)
                      +|+.+.+.. +.+..++..+..+|.+.|++++|.+.++...+..+.....+  ..+...|...|++++|...|+++....
T Consensus       165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF--YKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999998863 45788899999999999999999888887766655554444  258899999999999999999998753


Q ss_pred             CCCchHHHHHHH------------HHHHHhcCcHHHHHHHHHHHHhcCCc-cc--HhhHHHHHHHHHhcCCHHHHHHHHH
Q 010320          398 TSVTTVRIMRCI------------VSSYFRCNAVDKLANFVKRAESAGWR-LC--RSLYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       398 ~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~-p~--~~~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                        |.+...+..+            ...|.+.|++++|.++++++.+.... +.  ...|..+...+.+.|++++|...++
T Consensus       242 --p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          242 --QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             --CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence              3344445444            88999999999999999999875422 11  4578889999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       463 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      ++.+.. +.+...|..+..+|...|++++|.+.++++.+.
T Consensus       320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            998765 457899999999999999999999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.2e-21  Score=196.22  Aligned_cols=358  Identities=8%  Similarity=-0.078  Sum_probs=293.9

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++++.|...|+.+.+..     |+...|..+..+|.+.|++++|.+.|+++.+.++.+..+|..+..+|.+.|++++|+
T Consensus        19 ~g~~~~A~~~~~~al~~~-----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   93 (514)
T 2gw1_A           19 NKKYDDAIKYYNWALELK-----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAM   93 (514)
T ss_dssp             TSCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hccHHHHHHHHHHHHhcC-----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHH
Confidence            578889999999887743     688999999999999999999999999999887768889999999999999999999


Q ss_pred             HHHHHHHHhCCCCCC-----------------------------------------------------------------
Q 010320          211 SLFRDLKKEANISPS-----------------------------------------------------------------  225 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~-----------------------------------------------------------------  225 (513)
                      ..|+++... + +++                                                                 
T Consensus        94 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (514)
T 2gw1_A           94 FDLSVLSLN-G-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF  171 (514)
T ss_dssp             HHHHHHHHS-S-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred             HHHHHHHhc-C-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence            999988753 1 111                                                                 


Q ss_pred             --------------HHHHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCCC--------CCHHHHHHHHHHHHHcc
Q 010320          226 --------------IVTYNTLISVFGR---LLLVDHMEAAFQEIKD-----SNLS--------PNVFTYNYLIAGYMTAW  275 (513)
Q Consensus       226 --------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~~~~~li~~~~~~g  275 (513)
                                    ...+......+..   .|++++|..+|+++.+     ..-.        .+..+|..+...+...|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (514)
T 2gw1_A          172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN  251 (514)
T ss_dssp             CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence                          2333333333443   8999999999999987     3111        23567888899999999


Q ss_pred             CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010320          276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA  355 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  355 (513)
                      ++++|.++|+++.+..  |+..++..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...++
T Consensus       252 ~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~  328 (514)
T 2gw1_A          252 DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD  328 (514)
T ss_dssp             CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999998754  448889999999999999999999999998863 3467788999999999999999999888


Q ss_pred             HHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Q 010320          356 LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR  435 (513)
Q Consensus       356 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  435 (513)
                      ...+..+.....+  ..+...+...|++++|...++++.+..  +.+..++..+...+...|++++|.+.++++.+....
T Consensus       329 ~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  404 (514)
T 2gw1_A          329 KAKELDPENIFPY--IQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK  404 (514)
T ss_dssp             HHHHTCSSCSHHH--HHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhChhhHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            8777766655444  258889999999999999999998854  334556888999999999999999999988754321


Q ss_pred             -cc----HhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          436 -LC----RSLYHSKMVMYAS---QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       436 -p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                       ++    ...+..+...|..   .|++++|...++++.+.+ +.+..+|..+...|.+.|++++|.+.|++..+..
T Consensus       405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence             11    3378889999999   999999999999998765 4577889999999999999999999999987653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=9.1e-20  Score=182.44  Aligned_cols=337  Identities=7%  Similarity=-0.144  Sum_probs=276.6

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      ...+......+.+.|++++|.+.|+++.+.+ |+...|..+..+|.+.|++++|++.|+++.+.  .+.+..+|..+..+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHH
Confidence            4566777888999999999999999999876 48899999999999999999999999999975  24567899999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCC--------------------------------------------------------
Q 010320          236 FGRLLLVDHMEAAFQEIKDSNLSP--------------------------------------------------------  259 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p--------------------------------------------------------  259 (513)
                      +.+.|++++|...|+++.+.+...                                                        
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            999999999999999998764210                                                        


Q ss_pred             ----------------------CHHHHHHHHHHHHH---ccCHHHHHHHHHHHHc-----CCCC--------CCHHHHHH
Q 010320          260 ----------------------NVFTYNYLIAGYMT---AWMWGKVEEIYQMMKA-----GPVM--------PDTNTYLL  301 (513)
Q Consensus       260 ----------------------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~--------p~~~t~~~  301 (513)
                                            +...+......+..   .|++++|..+|+++.+     ..-.        .+..++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (514)
T 2gw1_A          163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH  242 (514)
T ss_dssp             HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence                                  12333333333443   7999999999999887     3111        23678888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC
Q 010320          302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED  381 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  381 (513)
                      +...+...|++++|..+++.+.+....  ...+..+...|...|+++.|...++......+.....+  ..+...+...|
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~  318 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY--YHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH--HHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH--HHHHHHHHHhC
Confidence            999999999999999999999887543  88889999999999999998888877776655554444  35888999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHH
Q 010320          382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL  461 (513)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  461 (513)
                      ++++|...+++.....  +.+...+..+...+...|++++|.++++++.+... .+...+..+...|.+.|++++|...+
T Consensus       319 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~  395 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQY  395 (514)
T ss_dssp             CTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999998854  33455788899999999999999999999987543 25677888999999999999999999


Q ss_pred             HHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHhHHHHHHHHHHHC
Q 010320          462 KEMENYKID-CS----KKTFWIMYYAYAT---CGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       462 ~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~  502 (513)
                      +++.+..-. ++    ...|..+...+..   .|++++|.+.++++.+.
T Consensus       396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~  444 (514)
T 2gw1_A          396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL  444 (514)
T ss_dssp             HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence            998764311 11    3489999999999   99999999999998765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=4e-19  Score=178.88  Aligned_cols=360  Identities=11%  Similarity=-0.009  Sum_probs=278.0

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++.+.|...|+.+.+..    +.+...|..+..+|.+.|++++|.+.|+++.+.++.+..+|..+...+...|++++|+
T Consensus        38 ~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  113 (537)
T 3fp2_A           38 AKNFNEAIKYYQYAIELD----PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM  113 (537)
T ss_dssp             TTCCC-CHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hccHHHHHHHHHHHHhhC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Confidence            567888888888877653    4478888889999999999999999999988877778888899999999999999999


Q ss_pred             HHHHHHHHhC-----------------------------------CCCCCHHH---------------------------
Q 010320          211 SLFRDLKKEA-----------------------------------NISPSIVT---------------------------  228 (513)
Q Consensus       211 ~~~~~m~~~~-----------------------------------g~~p~~~~---------------------------  228 (513)
                      +.|+.+....                                   ...|+...                           
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (537)
T 3fp2_A          114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY  193 (537)
T ss_dssp             HHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence            8886442110                                   00111111                           


Q ss_pred             ---HHHHHHHHH--------hcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320          229 ---YNTLISVFG--------RLLLVDHMEAAFQEIKDSNLSPN-------VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       229 ---~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                         ...+...+.        ..|++++|..+|+++.+.... +       ..+|..+...+...|++++|.+.|+++.+.
T Consensus       194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~  272 (537)
T 3fp2_A          194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL  272 (537)
T ss_dssp             HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence               111111111        124788999999999875432 2       335777778888999999999999999884


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010320          291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN  370 (513)
Q Consensus       291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  370 (513)
                        .|+..++..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|+++.|.+.++...+..+.....+. 
T Consensus       273 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-  348 (537)
T 3fp2_A          273 --HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI-  348 (537)
T ss_dssp             --CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH-
T ss_pred             --CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH-
Confidence              5778899999999999999999999999998864 456788999999999999999999988877776665554442 


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc-----cHhhHHHHH
Q 010320          371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL-----CRSLYHSKM  445 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~li  445 (513)
                       .+...+...|++++|.+.++++.+..  |.+..++..+...+...|++++|.+.++++.+.....     ....+....
T Consensus       349 -~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a  425 (537)
T 3fp2_A          349 -QLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA  425 (537)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence             58899999999999999999998854  4445678889999999999999999999986543111     111233445


Q ss_pred             HHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          446 VMYASQ----------RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       446 ~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ..|...          |++++|...|++..+.. +.+...|..+...|.+.|++++|.+.|++..+..
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            667777          99999999999998875 5577889999999999999999999999987653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=1.4e-18  Score=165.01  Aligned_cols=324  Identities=8%  Similarity=-0.042  Sum_probs=221.9

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      |...+..+...+.+.|++++|.+.|+++.+..+.+..+|..+...+...|++++|+..|+++.+.  .+-+...|..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence            34556667777777777777777777777766556777777777777777777777777777754  1335567777777


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010320          235 VFGRLLLVDHMEAAFQEIKDSNLS--PNVFTYNYL------------IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL  300 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  300 (513)
                      .+...|++++|...|++..+....  .+...+..+            ...+...|++++|.++|+++.+.. ..+...+.
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  158 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE  158 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence            777777777777777777764320  133334333            466677777777777777776642 23566777


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch----------H
Q 010320          301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL----------N  370 (513)
Q Consensus       301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------~  370 (513)
                      .+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++...+..+.....+.          .
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  237 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL  237 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHH
Confidence            77777777777777777777777652 345666777777777777777776666655555444333221          0


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010320          371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV--RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY  448 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  448 (513)
                      ..+...+...|++++|.+.+++........+..  ..+..+...+...|++++|.+.++++.+.. +.+...+..+...|
T Consensus       238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            023666888899999999998888754332211  235557788888999999999999887654 23577888888889


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA  484 (513)
Q Consensus       449 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  484 (513)
                      ...|++++|...|++..+.. +-+...+..+..+..
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence            99999999999999988765 334555656555544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=9.4e-18  Score=159.30  Aligned_cols=303  Identities=7%  Similarity=-0.049  Sum_probs=251.3

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      ++..+..+...+...|++++|++.|+++.+.  .+.+..++..+...+...|++++|...|+++.+... -+...|..+.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~   78 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHH
Confidence            4567888999999999999999999999875  355688999999999999999999999999998643 3678999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCC----CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhccCCCcHH
Q 010320          269 AGYMTAWMWGKVEEIYQMMKAGPVMP----DTNTYLLL------------LRGYAHSGNLPRMEKIYELVKHHVDGKEFP  332 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  332 (513)
                      ..+...|++++|.+.|+++.+.  .|    +...+..+            ...+...|++++|.++++.+.+.. +.+..
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  155 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAE  155 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH
Confidence            9999999999999999999884  45    34444444            578899999999999999998863 45778


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH-----
Q 010320          333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR-----  407 (513)
Q Consensus       333 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----  407 (513)
                      .+..+...+...|+++.|...++...+..+.....+  ..+...+...|++++|.+.+++..+.....  ...+.     
T Consensus       156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~  231 (359)
T 3ieg_A          156 LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF--YKISTLYYQLGDHELSLSEVRECLKLDQDH--KRCFAHYKQV  231 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCccc--hHHHHHHHHH
Confidence            899999999999999999888887777665554444  258889999999999999999998854433  33232     


Q ss_pred             -------HHHHHHHhcCcHHHHHHHHHHHHhcCCcccH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010320          408 -------CIVSSYFRCNAVDKLANFVKRAESAGWRLCR----SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF  476 (513)
Q Consensus       408 -------~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  476 (513)
                             .+...+...|++++|.+.++++.+.... +.    ..+..+...|...|++++|...+++..+.. +.+..+|
T Consensus       232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  309 (359)
T 3ieg_A          232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL  309 (359)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence                   2366788999999999999998875533 22    235567788999999999999999998865 4578899


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          477 WIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       477 ~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ..+...|...|++++|.+.|++..+..
T Consensus       310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          310 KDRAEAYLIEEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999998653

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.84  E-value=5e-21  Score=193.42  Aligned_cols=152  Identities=13%  Similarity=0.081  Sum_probs=122.5

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKE--ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY  266 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  266 (513)
                      -..+||+||.+||+.|++++|.++|++|.+.  .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            3568999999999999999999999887531  27899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCH-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc------HHHHHHHHH
Q 010320          267 LIAGYMTAWMW-GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE------FPLIRAMIC  339 (513)
Q Consensus       267 li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~  339 (513)
                      ||+++|+.|+. ++|.++|++|.+.|+.||..||++++.++.+.+    +++..+++ ..++.|+      ..+...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            99999999974 788999999999999999999999987766543    33333333 2233333      445556666


Q ss_pred             HHHhcC
Q 010320          340 AYSKCS  345 (513)
Q Consensus       340 ~~~~~g  345 (513)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            777654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.83  E-value=1.1e-17  Score=168.27  Aligned_cols=336  Identities=7%  Similarity=-0.069  Sum_probs=260.4

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      ...|..+...+.+.|++++|.+.|+++.+..+.+..+|..+..+|.+.|++++|++.|+++.+.  -+.+..++..+..+
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~  102 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHH
Confidence            4567778888999999999999999999988779999999999999999999999999999875  24567899999999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCC------------------------------------CCCHH-----------------
Q 010320          236 FGRLLLVDHMEAAFQEIKDSNL------------------------------------SPNVF-----------------  262 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~------------------------------------~p~~~-----------------  262 (513)
                      +...|++++|...|+.+....-                                    .|+..                 
T Consensus       103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS  182 (537)
T ss_dssp             HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence            9999999999999964421100                                    01111                 


Q ss_pred             -------------HHHHHHHHHH--------HccCHHHHHHHHHHHHcCCCCCC--------HHHHHHHHHHHHhcCChH
Q 010320          263 -------------TYNYLIAGYM--------TAWMWGKVEEIYQMMKAGPVMPD--------TNTYLLLLRGYAHSGNLP  313 (513)
Q Consensus       263 -------------~~~~li~~~~--------~~g~~~~a~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~g~~~  313 (513)
                                   ....+...+.        ..|++++|..+|+++.+..  |+        ..++..+...+...|+++
T Consensus       183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~  260 (537)
T 3fp2_A          183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLL  260 (537)
T ss_dssp             SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence                         1111111111        1247889999999988743  44        335777778888999999


Q ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010320          314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA  393 (513)
Q Consensus       314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  393 (513)
                      +|.+.++.+.+..  |+...+..+...|...|+++.|.+.++...+..+.....+  ..+...+...|++++|.+.|++.
T Consensus       261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~a  336 (537)
T 3fp2_A          261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTY--YHRGQMYFILQDYKNAKEDFQKA  336 (537)
T ss_dssp             HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999998864  4477888899999999999999888877776665544444  35888899999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----
Q 010320          394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK-----  468 (513)
Q Consensus       394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----  468 (513)
                      .....  .+...+..+...+...|++++|.++++++.+... .+...+..+...|...|++++|...|+++.+.+     
T Consensus       337 ~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  413 (537)
T 3fp2_A          337 QSLNP--ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK  413 (537)
T ss_dssp             HHHCT--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence            88543  3445688899999999999999999999887653 356778889999999999999999999887642     


Q ss_pred             CCCCHHHHHHHHHHHHhc----------CCHhHHHHHHHHHHHC
Q 010320          469 IDCSKKTFWIMYYAYATC----------GQRRKVNQVLGLMCKN  502 (513)
Q Consensus       469 ~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~  502 (513)
                      .......+..+...+...          |++++|.+.+++..+.
T Consensus       414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  457 (537)
T 3fp2_A          414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL  457 (537)
T ss_dssp             CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence            112233345556777777          9999999999998765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=6.4e-21  Score=192.66  Aligned_cols=160  Identities=11%  Similarity=0.096  Sum_probs=131.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010320          225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKD---SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL  301 (513)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  301 (513)
                      -..|||+||++||+.|++++|.++|++|.+   .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            356999999999999999999999988764   58999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCh-HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc--------cchHHH
Q 010320          302 LLRGYAHSGNL-PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--------PWLNVL  372 (513)
Q Consensus       302 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~~  372 (513)
                      ||.++|+.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.+       +++.++++.+ +..        ..+..+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~-------vL~~Vrkv~P-~f~p~~~~~~~~~t~~L  277 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT-------VLKAVHKVKP-TFSLPPQLPPPVNTSKL  277 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH-------HHHHHGGGCC-CCCCCCCCCCCCCCCTT
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH-------HHHHHHHhCc-ccCCCCCCcccccchHH
Confidence            99999999985 789999999999999999999999998776643       4444555432 111        112225


Q ss_pred             HHHHHHhcC---------CHHHHHHHHHH
Q 010320          373 LIRVYAKED---------CLEEMEKSIND  392 (513)
Q Consensus       373 li~~~~~~~---------~~~~a~~~~~~  392 (513)
                      |.+.|.+.+         ..++-.+.|++
T Consensus       278 L~dl~s~d~~~s~pk~~~~~~~L~~~~~~  306 (1134)
T 3spa_A          278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEK  306 (1134)
T ss_dssp             THHHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred             HHHHHccCCCCcCccccCCHHHHHHHHHH
Confidence            667777655         24566566654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.83  E-value=2.3e-17  Score=154.72  Aligned_cols=295  Identities=8%  Similarity=-0.058  Sum_probs=208.5

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010320          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT  231 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~  231 (513)
                      .+.+...+..+...+...|++++|.++|+++.+..+.+...+..++..+...|++++|..+++++.+.  .+.+...|..
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~   95 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFA   95 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHH
Confidence            34466677778888888899999999999988877667778888888888899999999999988875  2446678888


Q ss_pred             HHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010320          232 LISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       232 li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  310 (513)
                      +...+...| ++++|...|++..+... .+...|..+...+...|++++|.+.|+++.+.. ..+...+..+...+...|
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence            888888888 88999999988887643 356778888888888899999998888887743 123566777888888888


Q ss_pred             ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010320          311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI  390 (513)
Q Consensus       311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  390 (513)
                      ++++|.+.+++..+.. +.+...+..+...|...|++++|                                    ...+
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A------------------------------------~~~~  216 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA------------------------------------EKWF  216 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH------------------------------------HHHH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH------------------------------------HHHH
Confidence            8888888888887753 33445555555555555555544                                    4444


Q ss_pred             HHHHhcC-------CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010320          391 NDAFEHK-------TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE  463 (513)
Q Consensus       391 ~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  463 (513)
                      ++.....       ..+....++..+...+...|++++|.+.++++.+.... +...+..+...|.+.|++++|...|++
T Consensus       217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (330)
T 3hym_B          217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHT  295 (330)
T ss_dssp             HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4433311       01223345667777777777777777777777655422 456677777777778888888888877


Q ss_pred             HHhCCCCCCHHHHHHHHHHH-HhcCCH
Q 010320          464 MENYKIDCSKKTFWIMYYAY-ATCGQR  489 (513)
Q Consensus       464 m~~~~~~p~~~~~~~li~~~-~~~g~~  489 (513)
                      ..+.. +.+...+..+..++ ...|+.
T Consensus       296 al~~~-p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          296 ALGLR-RDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             TTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHccC-CCchHHHHHHHHHHHHHhCch
Confidence            76654 34566666666666 344543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.80  E-value=7.7e-18  Score=160.79  Aligned_cols=306  Identities=10%  Similarity=-0.047  Sum_probs=186.1

Q ss_pred             HhcccCCHHHHHH-HHHHHHhccCC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010320          165 FAGRINNVDLAAD-LFAEAANKHLK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL  239 (513)
Q Consensus       165 ~~~~~g~~~~a~~-~~~~m~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~  239 (513)
                      .+...|++++|.+ .|++.......    +...+..+...+.+.|++++|+..|+++.+.  .+.+..+|..+..++.+.
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~  111 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAEN  111 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence            3445567777776 66654433221    2455667777777777777777777777753  244566777777777777


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 010320          240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKI  318 (513)
Q Consensus       240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~  318 (513)
                      |++++|...|+++.+... .+..+|..+...|...|++++|.+.|+++....  |+. ..+..+...       ...   
T Consensus       112 g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~---  178 (368)
T 1fch_A          112 EQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AGG---  178 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------------------
T ss_pred             cCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hhh---
Confidence            777777777777776543 356677777777777777777777777776633  321 111111000       000   


Q ss_pred             HHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010320          319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT  398 (513)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  398 (513)
                              ..+ ...+.. +..+...|++++|...++...+..+....+..+..+...|...|++++|...|++++..  
T Consensus       179 --------~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--  246 (368)
T 1fch_A          179 --------AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--  246 (368)
T ss_dssp             ----------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             --------hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence                    000 000001 11122444444444444444333333111222224677777778888888888887774  


Q ss_pred             CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------
Q 010320          399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID--------  470 (513)
Q Consensus       399 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------  470 (513)
                      .|.+..++..+...+...|++++|.+.++++.+... .+...+..+...|.+.|++++|...|+++.+..-.        
T Consensus       247 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  325 (368)
T 1fch_A          247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG  325 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence            344566788888889999999999999998876542 35677888889999999999999999888764311        


Q ss_pred             --CCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010320          471 --CSKKTFWIMYYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       471 --p~~~~~~~li~~~~~~g~~~~A~~~~~~  498 (513)
                        ....+|..+..+|...|++++|..++++
T Consensus       326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          326 GAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             cchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence              1267899999999999999999888763

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.79  E-value=5.7e-16  Score=145.22  Aligned_cols=258  Identities=9%  Similarity=-0.023  Sum_probs=193.6

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-Ch
Q 010320          128 KQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LS  206 (513)
Q Consensus       128 ~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~  206 (513)
                      ....++.+.|..+++.+.+..    +.+...+..++..+...|++++|..+++++.+..+.+...|..+...+...| ++
T Consensus        32 ~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  107 (330)
T 3hym_B           32 HYYNCDFKMCYKLTSVVMEKD----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN  107 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCH
T ss_pred             HHHcCCHHHHHHHHHHHHHcC----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhH
Confidence            333679999999999887753    3456677788889999999999999999999987778899999999999999 99


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010320          207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM  286 (513)
Q Consensus       207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (513)
                      ++|.+.|++..+.  .+.+...|..+...+...|++++|...|++..+.... +...+..+...|...|++++|.+.|++
T Consensus       108 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~  184 (330)
T 3hym_B          108 EHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQ  184 (330)
T ss_dssp             HHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999864  2445788999999999999999999999999986543 467777899999999999999999999


Q ss_pred             HHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC--------CCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010320          287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD--------GKEFPLIRAMICAYSKCSVTDRIKKIEALMR  358 (513)
Q Consensus       287 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  358 (513)
                      ..+.. ..+...+..+...+...|++++|...+++..+...        +....++..+...|.+.|++++|...++...
T Consensus       185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  263 (330)
T 3hym_B          185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL  263 (330)
T ss_dssp             HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            98854 33588999999999999999999999998876421        2233445555555555555555544444443


Q ss_pred             hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE  395 (513)
Q Consensus       359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  395 (513)
                      +..+.....+.  .+...+...|++++|.+.|++..+
T Consensus       264 ~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          264 VLIPQNASTYS--AIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHSTTCSHHHH--HHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             hhCccchHHHH--HHHHHHHHhccHHHHHHHHHHHHc
Confidence            33333222221  244444444455555544444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.78  E-value=2.6e-17  Score=157.12  Aligned_cols=289  Identities=10%  Similarity=-0.012  Sum_probs=190.6

Q ss_pred             CChHHHHH-HHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          132 SRPRLALE-VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       132 ~~~~~a~~-~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      ++.+.|.. .++............+...+..+...+.+.|++++|.+.|+++.+..+.+..+|..+...+...|++++|+
T Consensus        39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  118 (368)
T 1fch_A           39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI  118 (368)
T ss_dssp             -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence            45555665 55533222111111145668889999999999999999999999987778999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHHcc
Q 010320          211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY---------------LIAGYMTAW  275 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~g  275 (513)
                      +.|+++.+.  .+.+..++..+...+...|++++|...|+++.+.... +...+..               .+..+...|
T Consensus       119 ~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (368)
T 1fch_A          119 SALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS  195 (368)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred             HHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence            999999875  2557889999999999999999999999999986532 2222221               233334777


Q ss_pred             CHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010320          276 MWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE  354 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  354 (513)
                      ++++|.+.|+++.+..-. ++..++..+...+...|++++|...++++.+.. +.+..++..                  
T Consensus       196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~------------------  256 (368)
T 1fch_A          196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK------------------  256 (368)
T ss_dssp             HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH------------------
T ss_pred             cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHH------------------
Confidence            778888888777663211 146777777777777777777777777766642 223344444                  


Q ss_pred             HHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010320          355 ALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW  434 (513)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  434 (513)
                                        +...+...|++++|...|+++++.  .|.+...+..+...|...|++++|.+.++++.+...
T Consensus       257 ------------------l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  316 (368)
T 1fch_A          257 ------------------LGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR  316 (368)
T ss_dssp             ------------------HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ------------------HHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence                              444455555555555555555543  233445566666666666666666666666543221


Q ss_pred             cc----------cHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010320          435 RL----------CRSLYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       435 ~p----------~~~~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                      ..          ...+|..+..+|...|++++|..+++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence            11          14566666777777777777766654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.77  E-value=7.2e-14  Score=138.70  Aligned_cols=339  Identities=10%  Similarity=-0.033  Sum_probs=273.4

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH----
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR----INNVDLAADLFAEAANKHLKTIGTYNALLGAYMY----  202 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----  202 (513)
                      .++.+.|...|+...+.+      +...+..|-..|..    .++.++|.+.|++..+.|  +...+..|...|..    
T Consensus        56 ~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~  127 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGV  127 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred             CcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCC
Confidence            357888988888877643      67788888888888    899999999999988764  66788888888888    


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 010320          203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----A  274 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~  274 (513)
                      .+++++|++.|++.... |   +...+..|...|..    .++.++|.+.|++..+.|   +...+..+...|..    .
T Consensus       128 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~  200 (490)
T 2xm6_A          128 KVDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVE  200 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred             CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCC
Confidence            78999999999998864 3   67788888888887    789999999999998864   78888889888988    8


Q ss_pred             cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh----cCC
Q 010320          275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK----CSV  346 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~  346 (513)
                      +++++|.++|++..+.|   +...+..+...|..    .+++++|.+.|++..+.+   +...+..+...|..    .++
T Consensus       201 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d  274 (490)
T 2xm6_A          201 RNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKE  274 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCC
T ss_pred             cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCC
Confidence            99999999999998865   67788888888886    789999999999988864   45566667777776    777


Q ss_pred             hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC---c
Q 010320          347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE-----DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN---A  418 (513)
Q Consensus       347 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~  418 (513)
                      .++|.+.++...+.   +...- ...+...|...     +++++|...|++..+.+.    ...+..+...|...|   +
T Consensus       275 ~~~A~~~~~~a~~~---~~~~a-~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~~g~~~~  346 (490)
T 2xm6_A          275 PLKALEWYRKSAEQ---GNSDG-QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD----ATAQANLGAIYFRLGSEEE  346 (490)
T ss_dssp             HHHHHHHHHHHHTT---TCHHH-HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHSCCHHH
T ss_pred             HHHHHHHHHHHHHc---CCHHH-HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCccc
Confidence            77666655544332   22222 22466677766     899999999999888642    344666777777756   8


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHh
Q 010320          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRR  490 (513)
Q Consensus       419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~  490 (513)
                      .++|.+++++..+.+   +...+..+...|..    .+++++|...|++..+.|   +...+..|...|.+    .++++
T Consensus       347 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~  420 (490)
T 2xm6_A          347 HKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYV  420 (490)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence            899999999998775   56677888888888    899999999999999876   56778888899988    89999


Q ss_pred             HHHHHHHHHHHCCC
Q 010320          491 KVNQVLGLMCKNGY  504 (513)
Q Consensus       491 ~A~~~~~~m~~~g~  504 (513)
                      +|.++|++..+.|.
T Consensus       421 ~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          421 QAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCC
Confidence            99999999887763

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.76  E-value=5.4e-17  Score=154.81  Aligned_cols=94  Identities=5%  Similarity=-0.108  Sum_probs=43.2

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010320          159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR  238 (513)
Q Consensus       159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~  238 (513)
                      +..+...+.+.|++++|.++|+++.+..+.+..+|..+...|...|++++|++.|+++.+.  .+.+..+|..+..++..
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAVSYTN  145 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHc
Confidence            4444444444444444444444444443334444444444444444444444444444432  12234444444444444


Q ss_pred             cCChhHHHHHHHHHHH
Q 010320          239 LLLVDHMEAAFQEIKD  254 (513)
Q Consensus       239 ~g~~~~A~~~~~~m~~  254 (513)
                      .|++++|+..|+++.+
T Consensus       146 ~g~~~~A~~~~~~al~  161 (365)
T 4eqf_A          146 TSHQQDACEALKNWIK  161 (365)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHH
Confidence            4444444444444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.76  E-value=8.9e-17  Score=153.30  Aligned_cols=266  Identities=11%  Similarity=-0.012  Sum_probs=205.1

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +...|..+...+.+.|++++|+++|+++.+.  .+.+..+|..+..++.+.|++++|+..|+++.+... .+..+|..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence            5667888889999999999999999999875  255778899999999999999999999999887643 3678899999


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC-CcHHHHHH
Q 010320          269 AGYMTAWMWGKVEEIYQMMKAGPVMPD-----------TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG-KEFPLIRA  336 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~  336 (513)
                      .+|.+.|++++|++.|+++.+..  |+           ...+..+...+...|++++|.++++++.+.... .+..++..
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  218 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG  218 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence            99999999999999999987632  22           234445678888999999999999998886432 16778888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q 010320          337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC  416 (513)
Q Consensus       337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  416 (513)
                      +...|...|++++|.+.++...+..+.....+.  .+..+|...|++++|+..|++.++.  .|.+..++..+...|...
T Consensus       219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~  294 (365)
T 4eqf_A          219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWN--RLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINL  294 (365)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHC
Confidence            999999999999888888777776665554442  5888899999999999999998885  344577788899999999


Q ss_pred             CcHHHHHHHHHHHHhcCCc-----------ccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010320          417 NAVDKLANFVKRAESAGWR-----------LCRSLYHSKMVMYASQRRVEEMESVLKE  463 (513)
Q Consensus       417 ~~~~~a~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~  463 (513)
                      |++++|.+.++++.+....           .+...|..+..++...|+.+.+..+.++
T Consensus       295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999999987653211           1356788899999999999988887664

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.74  E-value=6.5e-16  Score=144.63  Aligned_cols=264  Identities=13%  Similarity=-0.020  Sum_probs=170.8

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      ..+..+...+.+.|++++|..+|+++.+..+.+...|..+...+...|++++|.+.|+++.+.  .+.+..++..+...+
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH   99 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHH
Confidence            445566777778888888888888888776667788888888888888888888888888764  244677788888888


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010320          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL--------------IA-GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL  301 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  301 (513)
                      ...|++++|.+.|+++.+.... +...+..+              .. .+...|++++|.+.++++.+.. ..+..++..
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  177 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS  177 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence            8888888888888888765322 22222222              11 2555666777777777766532 224666666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC
Q 010320          302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED  381 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  381 (513)
                      +...+...|++++|.+.++++.+.. +.+..++..                                    +...+...|
T Consensus       178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~------------------------------------l~~~~~~~~  220 (327)
T 3cv0_A          178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNK------------------------------------LGATLANGN  220 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH------------------------------------HHHHHHHTT
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHH------------------------------------HHHHHHHcC
Confidence            7777777777777777776666542 122333333                                    455555566


Q ss_pred             CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc-----------cHhhHHHHHHHHHh
Q 010320          382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL-----------CRSLYHSKMVMYAS  450 (513)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~  450 (513)
                      ++++|.+.+++..+..  +.+...+..+...|...|++++|.+.++++.+.....           +...|..+..+|.+
T Consensus       221 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  298 (327)
T 3cv0_A          221 RPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV  298 (327)
T ss_dssp             CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence            6666666666655532  3344556666677777777777777777665433221           35566677777777


Q ss_pred             cCCHHHHHHHHHH
Q 010320          451 QRRVEEMESVLKE  463 (513)
Q Consensus       451 ~g~~~~A~~~~~~  463 (513)
                      .|++++|..++++
T Consensus       299 ~g~~~~A~~~~~~  311 (327)
T 3cv0_A          299 MNRPDLVELTYAQ  311 (327)
T ss_dssp             TTCHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHH
Confidence            7777777776653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.74  E-value=8.1e-16  Score=143.96  Aligned_cols=266  Identities=6%  Similarity=-0.053  Sum_probs=200.0

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +...|..+...+...|++++|+.+|+++.+.  .+.+...+..+..++...|++++|...|+++.+... .+..+|..+.
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la   96 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALA   96 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHH
Confidence            4456778888899999999999999999875  245778888899999999999999999999987643 3678888889


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhccCCCcHH
Q 010320          269 AGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLL--------------LR-GYAHSGNLPRMEKIYELVKHHVDGKEFP  332 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~  332 (513)
                      ..+...|++++|.+.++++.+..  |+ ...+..+              .. .+...|++++|.++++++.+.       
T Consensus        97 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------  167 (327)
T 3cv0_A           97 VSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM-------  167 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh-------
Confidence            99999999999999999988743  32 2222222              11 134444555555555554443       


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 010320          333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS  412 (513)
Q Consensus       333 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  412 (513)
                                                  .+.....  ...+...+...|++++|.+.++++.+..  +.+..++..+...
T Consensus       168 ----------------------------~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~  215 (327)
T 3cv0_A          168 ----------------------------NPNDAQL--HASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGAT  215 (327)
T ss_dssp             ----------------------------STTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             ----------------------------CCCCHHH--HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence                                        2221111  2246667777788888888888877743  4456778899999


Q ss_pred             HHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHH
Q 010320          413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC-----------SKKTFWIMYY  481 (513)
Q Consensus       413 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~  481 (513)
                      +...|++++|.+.++++.+... .+...+..+...|.+.|++++|.+.++++.+..-..           +...|..+..
T Consensus       216 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~  294 (327)
T 3cv0_A          216 LANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM  294 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence            9999999999999999887653 357788999999999999999999999988754221           4788999999


Q ss_pred             HHHhcCCHhHHHHHHHHH
Q 010320          482 AYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       482 ~~~~~g~~~~A~~~~~~m  499 (513)
                      ++.+.|++++|.+++++.
T Consensus       295 ~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          295 LLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHTTCHHHHHHHTTCC
T ss_pred             HHHhcCCHHHHHHHHHHH
Confidence            999999999999988754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.73  E-value=5.8e-18  Score=158.97  Aligned_cols=305  Identities=11%  Similarity=0.040  Sum_probs=139.3

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010320          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS  211 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  211 (513)
                      ++.+.|.++++.+         ++..+|..+..++.+.|++++|++.|.+.     +|...|..++.++...|++++|+.
T Consensus        17 ~~ld~A~~fae~~---------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           17 GNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            3567787777643         34569999999999999999999999653     477799999999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010320          212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      +++..++.   .++..+.+.++.+|.+.|+++++.++++       .|+..+|+.+...|...|.+++|..+|..+    
T Consensus        83 yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           83 YLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            77766653   4667889999999999999999988885       277789999999999999999999999987    


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010320          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV  371 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  371 (513)
                           ..|..+..++.+.|++++|.+.+.++      .+..+|..++.+|...|+++.|..+...   +.   ..+....
T Consensus       149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~---~~ad~l~  211 (449)
T 1b89_A          149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH---IV---VHADELE  211 (449)
T ss_dssp             -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---TT---TCHHHHH
T ss_pred             -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---HH---hCHhhHH
Confidence                 36999999999999999999999887      2788999999999999999988554221   11   1122122


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhcCCcc------cHhhHHH
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC--NAVDKLANFVKRAESAGWRL------CRSLYHS  443 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~p------~~~~~~~  443 (513)
                      .++..|.+.|++++|..+++..+...  +....+|+-+.-+|++-  +++.+.++.|.  .+.+++|      +...|.-
T Consensus       212 ~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e  287 (449)
T 1b89_A          212 ELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAE  287 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHH
Confidence            48888999999999999999888643  45567788777777664  34444444444  2334444      4667888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 010320          444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR  490 (513)
Q Consensus       444 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  490 (513)
                      ++-.|...++++.|...   |.+.  +++.--...+.....+..+.+
T Consensus       288 ~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~e  329 (449)
T 1b89_A          288 LVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVE  329 (449)
T ss_dssp             HHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred             HHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHH
Confidence            88889999999988763   4432  233323334445555555544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.73  E-value=3.5e-13  Score=133.71  Aligned_cols=320  Identities=8%  Similarity=-0.054  Sum_probs=262.1

Q ss_pred             CHHHHHHHHHHhcc----cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCH
Q 010320          155 TKEEYTKGIKFAGR----INNVDLAADLFAEAANKHLKTIGTYNALLGAYMY----NGLSDKCQSLFRDLKKEANISPSI  226 (513)
Q Consensus       155 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~  226 (513)
                      +...+..+...|..    .+++++|.+.|++..+.|  +...+..|...|..    .++.++|++.|++.... |   +.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-G---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CH
Confidence            77888888888877    899999999999988763  67788899999999    89999999999999864 3   77


Q ss_pred             HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHH
Q 010320          227 VTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNT  298 (513)
Q Consensus       227 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t  298 (513)
                      ..+..|...|..    .+++++|...|++..+.|   +...+..|...|..    .+++++|++.|++..+.|   +...
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a  185 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS  185 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            888888888988    889999999999999875   67788888888887    789999999999998865   7888


Q ss_pred             HHHHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcccchH
Q 010320          299 YLLLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK----CSVTDRIKKIEALMRLIPEKEYRPWLN  370 (513)
Q Consensus       299 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~  370 (513)
                      +..+...|..    .++.++|.+.|++..+.+   +...+..+...|..    .++.++|.+.++...+.   +.... .
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a-~  258 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---GNSIA-Q  258 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---TCHHH-H
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHH-H
Confidence            9999999988    899999999999988865   55667778888875    67777766665544432   22222 2


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhcCCcccHhhH
Q 010320          371 VLLIRVYAK----EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-----NAVDKLANFVKRAESAGWRLCRSLY  441 (513)
Q Consensus       371 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~  441 (513)
                      ..+...|..    .++.++|.+.|++..+.+    +...+..+...|...     ++.++|.+.+++..+.+   +...+
T Consensus       259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~  331 (490)
T 2xm6_A          259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ  331 (490)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence            235566666    789999999999988754    234566777788877     89999999999998876   34566


Q ss_pred             HHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCC
Q 010320          442 HSKMVMYASQR---RVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       442 ~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  503 (513)
                      ..+...|...|   ++++|.+.|++..+.|   +...+..|...|..    .+++++|.++|++..+.|
T Consensus       332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            77777777756   8899999999999875   57788889999998    899999999999998876

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=2.8e-13  Score=135.82  Aligned_cols=217  Identities=7%  Similarity=0.001  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010320          279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAH-------SGNLP-------RMEKIYELVKHHVDGKEFPLIRAMICAYSKC  344 (513)
Q Consensus       279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  344 (513)
                      ++..+|++..... .-+...|......+.+       .|+++       +|..++++..+.-.+.+...|..++..+.+.
T Consensus       256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            4455555555421 1245566666666554       57766       7777777777632344577777777777777


Q ss_pred             CChhHHHHHHHHHHhCCCCCc-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HHhcCcHHHH
Q 010320          345 SVTDRIKKIEALMRLIPEKEY-RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS-YFRCNAVDKL  422 (513)
Q Consensus       345 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a  422 (513)
                      |++++|..+++...+....+. ..|.  .++..+.+.|++++|.++|++..+....  ....|...... +...|+.++|
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~~~~~~~~~~~A  410 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYI--QYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVA  410 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTHHHHHHHHHHHHHTCCHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHH--HHHHHHHHhcCHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHcCChhHH
Confidence            877777777766666544432 2332  4556666777788888888777764322  22223222211 2357778888


Q ss_pred             HHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320          423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK-IDCS--KKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       423 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      ..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+  ...|...+......|+.+.+.++++++
T Consensus       411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88888776543 1246667777777777888888888888777653 1222  336777777777778888887777776


Q ss_pred             HH
Q 010320          500 CK  501 (513)
Q Consensus       500 ~~  501 (513)
                      .+
T Consensus       490 ~~  491 (530)
T 2ooe_A          490 FT  491 (530)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.72  E-value=1.6e-15  Score=139.16  Aligned_cols=278  Identities=8%  Similarity=-0.001  Sum_probs=188.4

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhccCCC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320          163 IKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~  241 (513)
                      |+-....|++..|+..++......+.+ ....-.+.++|...|++++|+..++..     -.|+..++..+...+...|+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCc
Confidence            344456788888888777655433222 345566677888888888888755431     24666777778888888888


Q ss_pred             hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010320          242 VDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE  320 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  320 (513)
                      .++|++.++++...+..| +...+..+...+.+.|++++|++.+++      ..+...+..+...+.+.|++++|.+.++
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~  154 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK  154 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            888888888887766445 445556666778888888888888876      3467777778888888888888888888


Q ss_pred             HHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010320          321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV  400 (513)
Q Consensus       321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  400 (513)
                      .+.+..  |+... ..+..                                ..+..+...|++++|..+|+++.+.  .|
T Consensus       155 ~~~~~~--p~~~~-~~l~~--------------------------------a~~~l~~~~~~~~eA~~~~~~~l~~--~p  197 (291)
T 3mkr_A          155 KMQDQD--EDATL-TQLAT--------------------------------AWVSLAAGGEKLQDAYYIFQEMADK--CS  197 (291)
T ss_dssp             HHHHHC--TTCHH-HHHHH--------------------------------HHHHHHHCTTHHHHHHHHHHHHHHH--SC
T ss_pred             HHHhhC--cCcHH-HHHHH--------------------------------HHHHHHhCchHHHHHHHHHHHHHHh--CC
Confidence            877653  33211 11111                                1222333457888888888888875  35


Q ss_pred             chHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHH
Q 010320          401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE-MESVLKEMENYKIDCSKKTFWIM  479 (513)
Q Consensus       401 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~l  479 (513)
                      .+..+++.+..++.+.|++++|.+.++++.+... -+..++..++..+...|+.++ +.++++++.+.+  |+..   .+
T Consensus       198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~---~~  271 (291)
T 3mkr_A          198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHP---FI  271 (291)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCH---HH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCCh---HH
Confidence            5677788888888889999999998888876653 266778888888888888865 567888887654  3322   23


Q ss_pred             HHHHHhcCCHhHHHH
Q 010320          480 YYAYATCGQRRKVNQ  494 (513)
Q Consensus       480 i~~~~~~g~~~~A~~  494 (513)
                      .+...+.+.++++..
T Consensus       272 ~d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          272 KEYRAKENDFDRLVL  286 (291)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344555555555543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.71  E-value=3.9e-17  Score=153.34  Aligned_cols=327  Identities=8%  Similarity=-0.032  Sum_probs=148.3

Q ss_pred             CchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH
Q 010320          118 SNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA  195 (513)
Q Consensus       118 p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  195 (513)
                      ++..+|..+.++..  ++.+.|.+.|..         .+|...|..++..+...|++++|+..++...+ ..+++.+.+.
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfik---------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~~~~~~i~~~   99 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIK---------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETE   99 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCccchhHHH
Confidence            44457887777774  467778887752         24777899999999999999999997776655 3556788899


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010320          196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW  275 (513)
Q Consensus       196 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  275 (513)
                      ++.+|.+.|+++++.++++        .|+..+|+.+...|...|.+++|...|..+         ..|..+..++.+.|
T Consensus       100 Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg  162 (449)
T 1b89_A          100 LIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG  162 (449)
T ss_dssp             ---------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTT
T ss_pred             HHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhc
Confidence            9999999999999887773        367779999999999999999999999977         35899999999999


Q ss_pred             CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010320          276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA  355 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  355 (513)
                      ++++|.+.++++      .++.+|..++.+|...|+++.|......+.     .++.-...++..|.+.|.++++...++
T Consensus       163 ~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe  231 (449)
T 1b89_A          163 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLE  231 (449)
T ss_dssp             CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999988      278899999999999999999966554322     233334568888999998888777766


Q ss_pred             HHHhCCCCCcccchHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010320          356 LMRLIPEKEYRPWLNVLLIRVYAKE--DCLEEMEKSINDAFEHKTSVT------TVRIMRCIVSSYFRCNAVDKLANFVK  427 (513)
Q Consensus       356 ~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~  427 (513)
                      .-..+.+.....++  -+.-.|++-  +++.+.++.|.   .+-+.|+      ...+|..+.-.|.+.++++.|...  
T Consensus       232 ~aL~le~ah~~~ft--el~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t--  304 (449)
T 1b89_A          232 AALGLERAHMGMFT--ELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT--  304 (449)
T ss_dssp             HHTTSTTCCHHHHH--HHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH--
T ss_pred             HHhCCcHHHHHHHH--HHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence            65555544444443  344444443  45555555553   2212121      345677777777788888877652  


Q ss_pred             HHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010320          428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL  496 (513)
Q Consensus       428 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  496 (513)
                       |.++  .++..--..+.+...+..+.+--.+...=..+  -.|..  .+-|+.++...=++..+.++|
T Consensus       305 -m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~--l~~ll~~l~~~ld~~r~v~~~  366 (449)
T 1b89_A          305 -MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLL--LNDLLMVLSPRLDHTRAVNYF  366 (449)
T ss_dssp             -HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGG--HHHHHHHHGGGCCHHHHHHHH
T ss_pred             -HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHH--HHHHHHHHHhccCcHHHHHHH
Confidence             3322  23434445555666666666544444333332  12322  445555554444444444433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.71  E-value=1.5e-13  Score=137.86  Aligned_cols=373  Identities=9%  Similarity=-0.004  Sum_probs=264.6

Q ss_pred             chhHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHH
Q 010320          119 NGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALL  197 (513)
Q Consensus       119 ~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li  197 (513)
                      +...|..++... .++.+.|..+|+.+.+.    .|.+...|..++..+.+.|++++|.++|++..... |+...|...+
T Consensus        12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~----~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~   86 (530)
T 2ooe_A           12 DLDAWSILIREAQNQPIDKARKTYERLVAQ----FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYL   86 (530)
T ss_dssp             CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHH
Confidence            555777777754 56888999999988764    46688899999999999999999999999999875 4777888877


Q ss_pred             HHH-HHcCChHHHHH----HHHHHHHhCCCCC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHH
Q 010320          198 GAY-MYNGLSDKCQS----LFRDLKKEANISP-SIVTYNTLISVFGR---------LLLVDHMEAAFQEIKDSNLSPNVF  262 (513)
Q Consensus       198 ~~~-~~~g~~~~A~~----~~~~m~~~~g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~  262 (513)
                      ... ...|+.++|.+    +|+......|..| +...|...+....+         .|+++.|..+|++..+........
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~  166 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ  166 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence            533 45678877765    7777765546554 46678887776655         688999999999998731111124


Q ss_pred             HHHHHHHHHH-------------HccCHHHHHHHHHHHH------cCC---CCCC--------HHHHHHHHHHHHhc---
Q 010320          263 TYNYLIAGYM-------------TAWMWGKVEEIYQMMK------AGP---VMPD--------TNTYLLLLRGYAHS---  309 (513)
Q Consensus       263 ~~~~li~~~~-------------~~g~~~~a~~~~~~m~------~~g---~~p~--------~~t~~~ll~~~~~~---  309 (513)
                      .|.......-             +.+++++|..+++++.      +..   +.|+        ...|...+......   
T Consensus       167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~  246 (530)
T 2ooe_A          167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR  246 (530)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence            4544333211             2346777877777632      221   3444        24555555433322   


Q ss_pred             -CCh----HHHHHHHHHHHhccCCCcHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHh-CCCCCcccch
Q 010320          310 -GNL----PRMEKIYELVKHHVDGKEFPLIRAMICAYSK-------CSVTD-------RIKKIEALMRL-IPEKEYRPWL  369 (513)
Q Consensus       310 -g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~-~~~~~~~~~~  369 (513)
                       ++.    +.+..+|++.... .+.+...|..+...+.+       .|+++       .|..+++...+ ..+.....|.
T Consensus       247 ~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~  325 (530)
T 2ooe_A          247 TEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF  325 (530)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence             232    3677889988876 34577888888888875       68876       56666554443 3333333442


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH-H
Q 010320          370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT-VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV-M  447 (513)
Q Consensus       370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~-~  447 (513)
                        .++..+...|++++|..+|+++++..  |.+ ..+|...+..+.+.|++++|.++|++..+.... +...|..... .
T Consensus       326 --~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~  400 (530)
T 2ooe_A          326 --AYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME  400 (530)
T ss_dssp             --HHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHH
T ss_pred             --HHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence              57888889999999999999999853  333 347888888899999999999999999865321 2233322222 2


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       448 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+
T Consensus       401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence            346899999999999988764 4468899999999999999999999999998864

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.71  E-value=6.1e-15  Score=135.30  Aligned_cols=129  Identities=15%  Similarity=0.126  Sum_probs=101.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  451 (513)
                      .++..|.+.|++++|.+.|+++.+............+.+..+...|++++|..+|+++.+.. +.+...++.+..++.+.
T Consensus       135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~  213 (291)
T 3mkr_A          135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQ  213 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Confidence            46677788888888888888888754322112222333444556699999999999998764 45788899999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHHC
Q 010320          452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK-VNQVLGLMCKN  502 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~  502 (513)
                      |++++|...|++..+.+ +-+..++..++..+...|+.++ +.++++++.+.
T Consensus       214 g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          214 GRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            99999999999998876 5678899999999999999976 57888888754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.68  E-value=7.3e-14  Score=138.01  Aligned_cols=365  Identities=9%  Similarity=0.010  Sum_probs=197.5

Q ss_pred             HHHHHcCChHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc--------CCCHhH
Q 010320          126 LMKQLGSRPRLALEVLNWRRRQ-----AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH--------LKTIGT  192 (513)
Q Consensus       126 ~l~~~~~~~~~a~~~~~~~~~~-----~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~  192 (513)
                      .+....++.++|++.|+...+.     .....+-...+|+.+..+|...|++++|...+++..+..        .....+
T Consensus        59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~  138 (472)
T 4g1t_A           59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL  138 (472)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence            3444467778888888776653     111122345677778888888888888888877765421        113456


Q ss_pred             HHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010320          193 YNALLGAYMYN--GLSDKCQSLFRDLKKEANISPS-IVTYNTLISV---FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY  266 (513)
Q Consensus       193 ~~~li~~~~~~--g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  266 (513)
                      ++.+..++...  +++++|++.|++..+.   .|+ ...+..+..+   +...++.++|++.+++..+... .+..++..
T Consensus       139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~  214 (472)
T 4g1t_A          139 DCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVL  214 (472)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHH
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHH
Confidence            66666555554  3577888888887754   343 4444444433   3445667777877777776543 24555655


Q ss_pred             HHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010320          267 LIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS  342 (513)
Q Consensus       267 li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (513)
                      +...+..    .|++++|.+++++..... ..+..++..+...+...|++++|.+.+++..+.. +.+..++..+..+|.
T Consensus       215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          215 LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYR  292 (472)
T ss_dssp             HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence            5554444    356677888887776533 2346677778888888888888888888777653 345566666666665


Q ss_pred             hcCC-------------------hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010320          343 KCSV-------------------TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV  403 (513)
Q Consensus       343 ~~g~-------------------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  403 (513)
                      ..+.                   .+.+...++...+..+.....+.  .+...|...|++++|++.|++.+.....+...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~  370 (472)
T 4g1t_A          293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS--ILASLHALADQYEEAEYYFQKEFSKELTPVAK  370 (472)
T ss_dssp             HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH--HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh--hHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence            3211                   12222223333333333333332  36666666777777777776666543222211


Q ss_pred             -HHHHHHHH-HHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          404 -RIMRCIVS-SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY  481 (513)
Q Consensus       404 -~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~  481 (513)
                       .++..+.. .....|+.++|++.+++..+..  |+....         .+..+.+.++++.....+ +.+..+|..+..
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~---------~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~  438 (472)
T 4g1t_A          371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREK---------EKMKDKLQKIAKMRLSKN-GADSEALHVLAF  438 (472)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHH---------HHHHHHHHHHHHHHHHHC-C-CTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHH---------HHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence             11222221 2235566677777666665433  221111         112233444455544444 556789999999


Q ss_pred             HHHhcCCHhHHHHHHHHHHHCCC-CCCCCC
Q 010320          482 AYATCGQRRKVNQVLGLMCKNGY-DVPVNA  510 (513)
Q Consensus       482 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t  510 (513)
                      .|...|++++|++.|++..+.|- .|+..+
T Consensus       439 ~~~~~g~~~~A~~~y~kALe~~~~~p~a~~  468 (472)
T 4g1t_A          439 LQELNEKMQQADEDSERGLESGSLIPSASS  468 (472)
T ss_dssp             HHHHHHHCC---------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence            99999999999999999987653 344443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=9.4e-14  Score=124.98  Aligned_cols=224  Identities=9%  Similarity=-0.025  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC--CCCC----HHHH
Q 010320          226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP--VMPD----TNTY  299 (513)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~  299 (513)
                      ...|..+...+...|++++|+..|++..+..  .+..+|..+..++...|++++|++.|++..+..  ..++    ..++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            4567777777888888888888888877766  577777778888888888888888887776521  1112    4677


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHh
Q 010320          300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK  379 (513)
Q Consensus       300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  379 (513)
                      ..+...+...|++++|.+.|++..+..  |+..       .+.+                                    
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------~~~~------------------------------------  117 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD-------ILTK------------------------------------  117 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH-------HHHH------------------------------------
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--chhH-------HHHH------------------------------------
Confidence            777777777788888877777776642  2321       2223                                    


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHH
Q 010320          380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES  459 (513)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  459 (513)
                      .|++++|.+.++++..  ..+.+...+..+...+...|++++|.+.++++.+.... +...|..+...|...|++++|..
T Consensus       118 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~  194 (258)
T 3uq3_A          118 LRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIA  194 (258)
T ss_dssp             HHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHH
Confidence            3444444544444444  22333444555555555555555555555555443321 34445555555555555555555


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       460 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      .+++..+.+ +.+...|..+...+.+.|++++|.+.+++..
T Consensus       195 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          195 DCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            555555443 2334555555555555555555555555544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.62  E-value=9.8e-14  Score=121.51  Aligned_cols=196  Identities=13%  Similarity=0.004  Sum_probs=151.6

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      |++...+..+...+.+.|++++|...|++..+..+.+...|..+...+.+.|++++|+..|++..+.  -+-+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            4577788888889999999999999999998887778899999999999999999999999998875  24456788888


Q ss_pred             HHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010320          233 ISVFGRL-----------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL  301 (513)
Q Consensus       233 i~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  301 (513)
                      ..++.+.           |++++|+..|++..+.... +...|..+...+...|++++|+..|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            8888888           8889999888888875432 57778888888888889999998888888765  57888888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010320          302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE  354 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  354 (513)
                      +..++...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~  208 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAA  208 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-----------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHH
Confidence            8888888889988888888887763 345666777777777777766655443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.61  E-value=8.6e-12  Score=130.87  Aligned_cols=322  Identities=11%  Similarity=0.071  Sum_probs=183.8

Q ss_pred             cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010320          117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL  196 (513)
Q Consensus       117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  196 (513)
                      .|+.+....-.-...+.+.+|+++++.+.... ..+.-+...-+.++....+. +..+..+..++....      ...-+
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~-s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------d~~eI 1055 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDN-SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------DAPDI 1055 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC-CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc------cHHHH
Confidence            44444444444444667777777777666322 11223444555555555554 344444444444321      12335


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010320          197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                      ...+...|.+++|..+|++..      -.....+.++.   ..+++++|.++.++..      +..+|..+..++...|+
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence            566667777778877777642      12222333333   5566777777777552      46677777788888888


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010320          277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL  356 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  356 (513)
                      +++|++.|.+.      -|...|..++.+|.+.|++++|.+++....+..  ++....+.++.+|++.++++..+..   
T Consensus      1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f--- 1189 (1630)
T 1xi4_A         1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF--- 1189 (1630)
T ss_pred             HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH---
Confidence            88888877553      356677777888888888888888887766643  2222233477777777766533222   


Q ss_pred             HHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Q 010320          357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL  436 (513)
Q Consensus       357 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p  436 (513)
                      .   ...+...+ . .+...|...|++++|..+|...          ..|..+...+++.|++++|.+.+++..      
T Consensus      1190 I---~~~n~ad~-~-~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~------ 1248 (1630)
T 1xi4_A         1190 I---NGPNNAHI-Q-QVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN------ 1248 (1630)
T ss_pred             H---hCCCHHHH-H-HHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC------
Confidence            1   12222222 2 3667777777777777777653          247777777777777777777777652      


Q ss_pred             cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010320          437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  498 (513)
                      +..+|..+-.+|...|++..|......     +..+...+..++..|.+.|.+++|+.+++.
T Consensus      1249 n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A         1249 STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred             CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            334444444444445554444443332     122333444555555555555555555543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.61  E-value=2.2e-13  Score=122.51  Aligned_cols=226  Identities=12%  Similarity=0.033  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCC----HHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPS----IVTYN  230 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~----~~~~~  230 (513)
                      ...|..+...+...|++++|.+.|++..+.. .+...|..+...+...|++++|++.|++..+.. ...++    ..+|.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            3456667777777888888888888777766 677777788888888888888888887776531 01112    46777


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010320          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  310 (513)
                      .+...+...|++++|...|++..+..  |+.       ..+.+.|++++|.+.++++.... ..+...+..+...+...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence            77777778888888888887777642  442       33555677777777777776632 113556667777777777


Q ss_pred             ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010320          311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI  390 (513)
Q Consensus       311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  390 (513)
                      ++++|.+.++++.+.. +.+..++..+..                                    .|...|++++|...+
T Consensus       154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~------------------------------------~~~~~~~~~~A~~~~  196 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRA-PEDARGYSNRAA------------------------------------ALAKLMSFPEAIADC  196 (258)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHH------------------------------------HHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC-cccHHHHHHHHH------------------------------------HHHHhCCHHHHHHHH
Confidence            7777777777776642 223444444444                                    444455555555555


Q ss_pred             HHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010320          391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES  431 (513)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  431 (513)
                      ++.++..  |.+...|..+...+...|++++|.+.+++..+
T Consensus       197 ~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          197 NKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            5554432  22344455555556666666666665555543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.59  E-value=1.7e-11  Score=128.77  Aligned_cols=349  Identities=11%  Similarity=0.074  Sum_probs=238.0

Q ss_pred             HHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhccc
Q 010320           90 DELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI  169 (513)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~  169 (513)
                      ..++-..+...+++..+++.+.       .......++. -.+.++.|.++.+.+         -+..+|..+..++.+.
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLie-~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDV-------NTSAVQVLIE-HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHHH-HHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhC
Confidence            3344455666777777766532       1122233333 234677777776633         1577888888888888


Q ss_pred             CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010320          170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF  249 (513)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  249 (513)
                      |++++|.+.|.+.     .|...|..++.+|.+.|++++|.+.|...++.   .++....+.++.+|++.+++++...+.
T Consensus      1119 G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A         1119 GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred             CCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH
Confidence            9999988888653     37778888888888889999998888876653   244444445888888888887544332


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010320          250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK  329 (513)
Q Consensus       250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  329 (513)
                          +   .++...|..+...|...|++++|..+|...         ..|..+...+++.|++++|.+.+++.      .
T Consensus      1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A         1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred             ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence                2   256677777888888889999999888884         37888888888889988888888765      3


Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010320          330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI  409 (513)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  409 (513)
                      +..+|..+-.+|...|++..|..+..-+.      ..+.....++..|.+.|.+++|+.+++..+...  +....+|+-+
T Consensus      1249 n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftEL 1320 (1630)
T 1xi4_A         1249 STRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTEL 1320 (1630)
T ss_pred             CHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHH
Confidence            55778888888888887777665532110      111112258889999999999999998877643  5556677667


Q ss_pred             HHHHHhc--CcHHHHHHHHHHHHhcCCc------ccHhhHHHHHHHHHhcCCHHHHHHH-------------HHHHHhCC
Q 010320          410 VSSYFRC--NAVDKLANFVKRAESAGWR------LCRSLYHSKMVMYASQRRVEEMESV-------------LKEMENYK  468 (513)
Q Consensus       410 i~~~~~~--~~~~~a~~~~~~~~~~~~~------p~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~~  468 (513)
                      ...|++.  +++.++.++|..-  .+++      -+...|.-++-.|.+.|+++.|...             |.+...  
T Consensus      1321 aiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-- 1396 (1630)
T 1xi4_A         1321 AILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT-- 1396 (1630)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--
Confidence            6666664  3555555555532  1222      2466788999999999999999832             222221  


Q ss_pred             CCCCHHHHHHHHHHHHhcC---------------CHhHHHHHHH
Q 010320          469 IDCSKKTFWIMYYAYATCG---------------QRRKVNQVLG  497 (513)
Q Consensus       469 ~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~  497 (513)
                      -..|...|...+.-|...+               +++.+.++|.
T Consensus      1397 kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1397 KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence            1346777777777777666               6666666665

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.58  E-value=8.2e-12  Score=123.20  Aligned_cols=361  Identities=9%  Similarity=-0.101  Sum_probs=231.9

Q ss_pred             HHHHhhcCCChhHHHHHHhhhCCc-----cccccCc-hhHHHHHHHHH--cCChHHHHHHHHHHHHcCC----CCCCCCH
Q 010320           89 RDELLANVDDLDKVFRVLDEKGSC-----LFRRHSN-GYAFVELMKQL--GSRPRLALEVLNWRRRQAG----YGTPMTK  156 (513)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~-~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~----~g~~~~~  156 (513)
                      +..+....++..+++..+.+...-     .....|+ ..+|..+-..+  .++.+.|...++...+...    .......
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            334445556777777777664211     0011232 33454443333  5789999999998876421    1112245


Q ss_pred             HHHHHHHHHhccc--CCHHHHHHHHHHHHhccCCCHhHHHHHHHHH---HHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010320          157 EEYTKGIKFAGRI--NNVDLAADLFAEAANKHLKTIGTYNALLGAY---MYNGLSDKCQSLFRDLKKEANISPSIVTYNT  231 (513)
Q Consensus       157 ~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~  231 (513)
                      .++..+..++.+.  +++++|++.|++..+..+.+...+..+..++   ...++.++|++.|++..+.  -+.+..++..
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~  214 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVL  214 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHH
Confidence            6676666565544  5799999999999988776777777766553   4567889999999998864  2445667776


Q ss_pred             HHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHH
Q 010320          232 LISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGY  306 (513)
Q Consensus       232 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~  306 (513)
                      +...+..    .|++++|.+.+++...... .+..++..+...|.+.|++++|++.|++..+.  .|+ ..++..+..+|
T Consensus       215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y  291 (472)
T 4g1t_A          215 LALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCY  291 (472)
T ss_dssp             HHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence            6666554    4678899999999887654 47788999999999999999999999998874  354 67777777776


Q ss_pred             Hhc-------------------CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc
Q 010320          307 AHS-------------------GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP  367 (513)
Q Consensus       307 ~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  367 (513)
                      ...                   +..+.|...++...+.. +.+...+..+...|...|++++|.+.++...++.......
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~  370 (472)
T 4g1t_A          292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK  370 (472)
T ss_dssp             HHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence            532                   23566777777777653 3455667889999999999999988887666654433221


Q ss_pred             c-hHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHH
Q 010320          368 W-LNVLLIR-VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM  445 (513)
Q Consensus       368 ~-~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li  445 (513)
                      . .+..+.. .+...|++++|+..|++.++-..  ....          ..+..+.+.++++...... +.+..+|..+.
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~----------~~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG  437 (472)
T 4g1t_A          371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSRE----------KEKMKDKLQKIAKMRLSKN-GADSEALHVLA  437 (472)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHH----------HHHHHHHHHHHHHHHHHHC-C-CTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHH----------HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            1 1111222 33467899999999999887433  2221          1122344455666555444 33678899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCC
Q 010320          446 VMYASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       446 ~~~~~~g~~~~A~~~~~~m~~~~  468 (513)
                      ..|...|++++|++.|++..+.|
T Consensus       438 ~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          438 FLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHHHHHHHCC-------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC
Confidence            99999999999999999988765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.58  E-value=2e-12  Score=113.55  Aligned_cols=200  Identities=14%  Similarity=-0.026  Sum_probs=140.9

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      +...+..+...+...|++++|.+.|+++.+..+.+...|..+...|...|++++|.+.|++..+.  .+.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence            55667777778888888888888888887766557778888888888888888888888887764  2446677777888


Q ss_pred             HHHhc-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010320          235 VFGRL-LLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL  312 (513)
Q Consensus       235 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~  312 (513)
                      .+... |++++|...|+++.+.+..|+ ...|..+..++...|++++|++.|+++.+.. ..+...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence            88888 888888888888876322233 5667777778888888888888888777642 22467777777788888888


Q ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320          313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      ++|.++++.+.+.....+...+..+...+...|+.+.+...++.+
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            888888877766532134445555555555555555554444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.57  E-value=1.4e-12  Score=116.97  Aligned_cols=190  Identities=11%  Similarity=-0.031  Sum_probs=99.1

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      ..+..+...+...|++++|.+.|+++.+..+.+...|..+...|...|++++|++.|+++.+.  .+.+...+..+...+
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHH
Confidence            344455555555666666666666655554445555666666666666666666666665543  123445555555556


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010320          237 GRLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a  315 (513)
                      ...|++++|.+.|+++.+.+..| +...|..+...+.+.|++++|.+.|++..+.. ..+...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence            66666666666666555422223 33445555555555666666666665555432 11345555555555555555555


Q ss_pred             HHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHH
Q 010320          316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI  350 (513)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  350 (513)
                      ..+++.+.+.. +.+...+..+...+.+.|+.++|
T Consensus       195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A  228 (252)
T 2ho1_A          195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTA  228 (252)
T ss_dssp             HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHH
Confidence            55555555432 12333333333333333433333

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.57  E-value=1.7e-12  Score=117.86  Aligned_cols=195  Identities=10%  Similarity=-0.015  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--IVTYNTLI  233 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~~~~~li  233 (513)
                      ...+......+...|++++|.+.|++..+..+.+...|..+...|...|++++|++.|++.... +-.++  ...|..+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHH
Confidence            3455667778889999999999999999887767888999999999999999999999999863 22222  34588899


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010320          234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP  313 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~  313 (513)
                      ..+...|++++|+..|++..+... .+..+|..+...|...|++++|++.|++..+.. ..+...+..+...+...++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987644 366889999999999999999999999988752 224667777773555566999


Q ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC---hhHHHHHH
Q 010320          314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV---TDRIKKIE  354 (513)
Q Consensus       314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~  354 (513)
                      +|.+.|+++.+.. +.+...+..+...+...|+   .+.|...+
T Consensus       160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  202 (272)
T 3u4t_A          160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYY  202 (272)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence            9999999988863 3345666666666666665   44444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.57  E-value=2.8e-13  Score=118.56  Aligned_cols=210  Identities=11%  Similarity=-0.040  Sum_probs=154.3

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010320          259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI  338 (513)
Q Consensus       259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  338 (513)
                      ++...+..+...+.+.|++++|+..|++..+.. .-+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            566788888889999999999999999988743 2257888889999999999999999999988863 34556666666


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010320          339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA  418 (513)
Q Consensus       339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  418 (513)
                      ..|.+.+.            . ...            .+...|++++|+..|++.++.  .|.+...+..+...+...|+
T Consensus        81 ~~~~~~~~------------~-~~~------------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~  133 (217)
T 2pl2_A           81 EAYVALYR------------Q-AED------------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGE  133 (217)
T ss_dssp             HHHHHHHH------------T-CSS------------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhh------------h-hhh------------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCC
Confidence            55554310            0 000            112348899999999998884  35566778889999999999


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010320          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL  498 (513)
Q Consensus       419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  498 (513)
                      +++|.+.++++.+..  .+...+..+..+|...|++++|...|++..+.+ +-+...+..+...+...|++++|.+.+++
T Consensus       134 ~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          134 RDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred             hHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999998877  578888899999999999999999999998865 55778888999999999999999999887


Q ss_pred             HH
Q 010320          499 MC  500 (513)
Q Consensus       499 m~  500 (513)
                      ..
T Consensus       211 ~~  212 (217)
T 2pl2_A          211 EH  212 (217)
T ss_dssp             --
T ss_pred             Hh
Confidence            54

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.56  E-value=4.2e-12  Score=120.46  Aligned_cols=185  Identities=8%  Similarity=-0.048  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL-SDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      ..+|..+..++.+.|++++|++.|++..+..+.+..+|+.+..++...|+ +++|+..|++..+.  -+-+...|+.+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence            44566677777888889999999998888777788888888888888886 99999999888864  2446778888888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCChH
Q 010320          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH-SGNLP  313 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~  313 (513)
                      ++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++++... -+...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence            888889999999999888876543 778888888888888899999999888887432 257788888888888 55557


Q ss_pred             HH-----HHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010320          314 RM-----EKIYELVKHHVDGKEFPLIRAMICAYSKCS  345 (513)
Q Consensus       314 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  345 (513)
                      +|     ++.+++.++.. +.+...|+.+...+.+.|
T Consensus       253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG  288 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccC
Confidence            77     46777776653 345666776666666655

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.54  E-value=3.9e-12  Score=114.03  Aligned_cols=201  Identities=6%  Similarity=-0.053  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 010320          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA  340 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  340 (513)
                      ...|..+...+...|++++|.+.|+++.+.. ..+...+..+...+...|++++|.++++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            4667777777888888888888888877643 2356777777778888888888888887776653 2244444444444


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHH
Q 010320          341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD  420 (513)
Q Consensus       341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  420 (513)
                      |...                                    |++++|.+.++++...+..+.+...+..+...+...|+++
T Consensus       115 ~~~~------------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  158 (252)
T 2ho1_A          115 LYEQ------------------------------------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA  158 (252)
T ss_dssp             HHHT------------------------------------TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHH------------------------------------hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHH
Confidence            4444                                    4555555555544442222333444555555555555555


Q ss_pred             HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       421 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +|.+.++++.+... .+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.
T Consensus       159 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~  236 (252)
T 2ho1_A          159 QAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK  236 (252)
T ss_dssp             HHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            55555555544331 134445555555555555555555555555433 3344455555555555555555555555554


Q ss_pred             H
Q 010320          501 K  501 (513)
Q Consensus       501 ~  501 (513)
                      +
T Consensus       237 ~  237 (252)
T 2ho1_A          237 R  237 (252)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.53  E-value=2e-12  Score=117.33  Aligned_cols=246  Identities=11%  Similarity=-0.004  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 010320          193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP--NVFTYNYLIAG  270 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~  270 (513)
                      +......+...|++++|+..|++..+.  .+.+...+..+..++...|++++|+..|++..+.+..+  ...+|..+...
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            334445555555555555555555542  12223345555555555555555555555555422111  12234555555


Q ss_pred             HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHH
Q 010320          271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI  350 (513)
Q Consensus       271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  350 (513)
                      +...|++++|++.|++..+.. ..+..++..+...+...|++++|.+.+++..+. .+.+...+..              
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~--------------  147 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYE--------------  147 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHH--------------
T ss_pred             HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHH--------------
Confidence            555555555555555554421 112344455555555555555555555444443 1112222222              


Q ss_pred             HHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc---HHHHHHHHH
Q 010320          351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA---VDKLANFVK  427 (513)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~  427 (513)
                                            +...+...+++++|.+.|++.++..  |.+...+..+...+...|+   +++|...++
T Consensus       148 ----------------------l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  203 (272)
T 3u4t_A          148 ----------------------LGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYE  203 (272)
T ss_dssp             ----------------------HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence                                  2212223347777777777776643  3334556666666666676   666777777


Q ss_pred             HHHhcC-Cccc------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          428 RAESAG-WRLC------RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY  481 (513)
Q Consensus       428 ~~~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~  481 (513)
                      ++.+.. -.|+      ...|..+...|...|++++|...|++..+.+ +-+...+..+..
T Consensus       204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~  263 (272)
T 3u4t_A          204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM  263 (272)
T ss_dssp             HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence            664332 1122      2456677777888888888888888887755 334444444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.53  E-value=1.6e-12  Score=115.82  Aligned_cols=201  Identities=10%  Similarity=-0.007  Sum_probs=127.0

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010320          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI  233 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li  233 (513)
                      .+...|..+...+...|++++|.+.|++..+..+.+...+..+...+...|++++|++.|++..+.  .+.+...+..+.
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la   98 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG   98 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence            355566667777778888888888888887766557778888888888888888888888887764  234667777788


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010320          234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP  313 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~  313 (513)
                      ..+...|++++|.+.|+++.+... .+...+..+...+.+.|++++|.+.++++.+.. ..+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence            888888888888888888776543 366777777788888888888888888776632 235667777777788888888


Q ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010320          314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL  359 (513)
Q Consensus       314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  359 (513)
                      +|.+.++.+.+.. +.+..++..+...|.+.|++++|.+.++...+
T Consensus       177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            8888887776652 23445555555555555555555554444333

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.53  E-value=1e-12  Score=119.41  Aligned_cols=249  Identities=10%  Similarity=-0.025  Sum_probs=150.6

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH
Q 010320          201 MYNGLSDKCQSLFRDLKKEANISP--SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG  278 (513)
Q Consensus       201 ~~~g~~~~A~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  278 (513)
                      ...|++++|++.|+++.+.....+  +..+|..+...+...|++++|...|++..+... .+..+|..+...|...|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence            345678888888888875311111  345677777888888888888888888776543 35777788888888888888


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010320          279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR  358 (513)
Q Consensus       279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  358 (513)
                      +|.+.|++..+.. ..+..++..+...+...|++++|.+.++++.+..  |+.......+.                   
T Consensus        95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~-------------------  152 (275)
T 1xnf_A           95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLY-------------------  152 (275)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH-------------------
T ss_pred             HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHH-------------------
Confidence            8888888877632 1246677777777888888888888887777643  22221111111                   


Q ss_pred             hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc--
Q 010320          359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL--  436 (513)
Q Consensus       359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--  436 (513)
                                       .+...|++++|...+++........  ...+ .++..+...++.++|.+.++.+.......  
T Consensus       153 -----------------~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  212 (275)
T 1xnf_A          153 -----------------LAEQKLDEKQAKEVLKQHFEKSDKE--QWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAE  212 (275)
T ss_dssp             -----------------HHHHHHCHHHHHHHHHHHHHHSCCC--STHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred             -----------------HHHHhcCHHHHHHHHHHHHhcCCcc--hHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccc
Confidence                             2233356666666665555432221  1122 24555556666666666666654322111  


Q ss_pred             -cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010320          437 -CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL  496 (513)
Q Consensus       437 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  496 (513)
                       +...+..+...|.+.|++++|...|++..+.+  |+.  +.....++...|++++|++.+
T Consensus       213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence             14556667777777777777777777777644  321  223345566667777766654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.52  E-value=4.5e-13  Score=121.84  Aligned_cols=244  Identities=9%  Similarity=-0.065  Sum_probs=111.8

Q ss_pred             ccCCHHHHHHHHHHHHhccC---C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010320          168 RINNVDLAADLFAEAANKHL---K-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ..|++++|++.|+++.+...   + +..+|..+...+...|++++|++.|++..+.  .+.+..+|..+...+...|+++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence            34455555555555544321   1 3444555555555555555555555555442  1223445555555555555555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320          244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      +|...|++..+... .+..+|..+...|.+.|++++|.+.|+++.+.  .|+.......+..+...|++++|...++...
T Consensus        95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            55555555554321 13444555555555555555555555555442  2332233333333344455555555554444


Q ss_pred             hccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010320          324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR-----PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT  398 (513)
Q Consensus       324 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  398 (513)
                      ... +++...+. ++..+...++.+.+...   +.+.......     +..+..+...|...|++++|...|++.+... 
T Consensus       172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-  245 (275)
T 1xnf_A          172 EKS-DKEQWGWN-IVEFYLGNISEQTLMER---LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-  245 (275)
T ss_dssp             HHS-CCCSTHHH-HHHHHTTSSCHHHHHHH---HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             hcC-CcchHHHH-HHHHHHHhcCHHHHHHH---HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence            432 12222222 33334444433322222   2222211110     1112246677777778888888777777643 


Q ss_pred             CCchHHHHHHHHHHHHhcCcHHHHHHHH
Q 010320          399 SVTTVRIMRCIVSSYFRCNAVDKLANFV  426 (513)
Q Consensus       399 ~~~~~~~~~~li~~~~~~~~~~~a~~~~  426 (513)
                       |.+...+   ..++...|++++|++-+
T Consensus       246 -p~~~~~~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          246 -VHNFVEH---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             -CTTCHHH---HHHHHHHHHHHHC----
T ss_pred             -chhHHHH---HHHHHHHHHHHhhHHHH
Confidence             3222223   22455667777776654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.51  E-value=7.8e-12  Score=109.72  Aligned_cols=202  Identities=6%  Similarity=-0.091  Sum_probs=105.7

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010320          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC  339 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  339 (513)
                      +...|..+...+...|++++|.+.|+++.+.. ..+...+..+...+...|++++|.++++++.+.. +.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            45667777888888888888888888877643 2347778888888888888888888888877653 234445555555


Q ss_pred             HHHhc-CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010320          340 AYSKC-SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA  418 (513)
Q Consensus       340 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  418 (513)
                      .|... |++++|...++...+.+........+..+...+...|++++|...++++.+..  +.+...+..+...+...|+
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCC
Confidence            55555 55555444444333310000001111124444444444444444444444422  2223334444444444444


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME  465 (513)
Q Consensus       419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  465 (513)
                      +++|.++++++.+.....+...+..+...+...|+.++|..+++.+.
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            44444444444332211223333344444444444444444444443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.51  E-value=5e-11  Score=108.26  Aligned_cols=228  Identities=12%  Similarity=-0.009  Sum_probs=155.2

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY----NGLSDKCQSLFRDLKKEANISPSIVTYN  230 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~~~~  230 (513)
                      +..++..+...+...|++++|.+.|++..+.  .+...+..+...|..    .+++++|++.|++..+. +   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHH
Confidence            5667777777777888888888888877762  256677777788888    88888888888887764 3   677777


Q ss_pred             HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010320          231 TLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYLLL  302 (513)
Q Consensus       231 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  302 (513)
                      .+...+..    .+++++|+..|++..+.+   +...+..+...|..    .|++++|++.|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            77778877    888888888888877764   66777777777777    788888888888877754   56667777


Q ss_pred             HHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Q 010320          303 LRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA  378 (513)
Q Consensus       303 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  378 (513)
                      ...|..    .+++++|...|++..+.+   +...+..+...|..                                +..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~--------------------------------g~~  197 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHH--------------------------------GEG  197 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--------------------------------TCS
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc--------------------------------CCC
Confidence            777776    777888888877766653   22333333333333                                000


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcC
Q 010320          379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAG  433 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~  433 (513)
                      ..+++++|.+.|++..+.+.    ...+..+...|..    .+++++|.+.+++..+.+
T Consensus       198 ~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          198 ATKNFKEALARYSKACELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             CCccHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            05566666666666555432    2335555666666    666777777777666655

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.51  E-value=5e-12  Score=119.93  Aligned_cols=254  Identities=7%  Similarity=-0.051  Sum_probs=178.5

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-VDHMEAAFQEIKDSNLSPNVFTYNYL  267 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l  267 (513)
                      +...|+.+...+.+.|++++|++.|++..+.  -+-+...|+.+..++...|+ +++|+..|++..+.... +...|+.+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~  172 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence            6788999999999999999999999999975  24457899999999999997 99999999999987653 78999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh-cCC
Q 010320          268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSV  346 (513)
Q Consensus       268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~  346 (513)
                      ..++.+.|++++|+..|+++.+.. .-+...|..+..++...|++++|+..++++++.. +.+...|+.+..+|.+ .|.
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~  250 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY  250 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence            999999999999999999998843 2268899999999999999999999999999874 3477788888888877 454


Q ss_pred             hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC--cHHHHHH
Q 010320          347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN--AVDKLAN  424 (513)
Q Consensus       347 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~  424 (513)
                      .+.|.                               .+.+++.|++.+.  ..|.+...|+.+...+...|  ++++|.+
T Consensus       251 ~~eA~-------------------------------~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~  297 (382)
T 2h6f_A          251 NDRAV-------------------------------LEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLN  297 (382)
T ss_dssp             CSHHH-------------------------------HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred             chHHH-------------------------------HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHH
Confidence            35442                               1112233333333  22334445555555555555  4555655


Q ss_pred             HHHHHHhcCCcccHhhHHHHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 010320          425 FVKRAESAGWRLCRSLYHSKMVMYASQR---------RVEEMESVLKEM-ENYKIDCSKKTFWIMYYAY  483 (513)
Q Consensus       425 ~~~~~~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~  483 (513)
                      .+.++ +.. ..+...+..+...|.+.|         .+++|.++|+++ .+.+ +-....|..+...+
T Consensus       298 ~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l  363 (382)
T 2h6f_A          298 QLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL  363 (382)
T ss_dssp             HHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred             HHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence            55555 221 223444555555555542         235666666666 4433 22333444444433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.50  E-value=1.9e-12  Score=125.34  Aligned_cols=273  Identities=10%  Similarity=-0.052  Sum_probs=169.2

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CC
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-I----VTYNTLISVFGRLLLVDHMEAAFQEIKDS----N-LS  258 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~  258 (513)
                      ....+..+...+...|++++|+..|++..+.   .|+ .    ..|..+...+...|++++|+..|++..+.    + ..
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            3455666778889999999999999999875   233 3    47888889999999999999999998753    1 11


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCC-----------------hHHHH
Q 010320          259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMP-DTNTYLLLLRGYAHSGN-----------------LPRME  316 (513)
Q Consensus       259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-----------------~~~a~  316 (513)
                      ....++..+...|...|++++|.+.|++..+.    +-.+ ...++..+...|...|+                 +++|.
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~  203 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV  203 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence            23467788888899999999999999887652    1111 25577778888888888                 67776


Q ss_pred             HHHHHHHhc----cCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010320          317 KIYELVKHH----VDGK-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN  391 (513)
Q Consensus       317 ~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  391 (513)
                      +.+++..+.    +..+ ...++..                                    +...|...|++++|++.++
T Consensus       204 ~~~~~al~~~~~~~~~~~~~~~~~~------------------------------------la~~~~~~g~~~~A~~~~~  247 (411)
T 4a1s_A          204 EFYQENLKLMRDLGDRGAQGRACGN------------------------------------LGNTYYLLGDFQAAIEHHQ  247 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHH------------------------------------HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH------------------------------------HHHHHHHcCChHHHHHHHH
Confidence            666654431    0000 1123333                                    4445555555555555555


Q ss_pred             HHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-----ccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010320          392 DAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR-----LCRSLYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       392 ~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                      +.++..    .......++..+...|...|++++|.+.+++..+....     ....++..+...|...|++++|...++
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (411)
T 4a1s_A          248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN  327 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            544321    11111224555666666666666666666655432110     113445556666666677777666666


Q ss_pred             HHHhCC----C-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          463 EMENYK----I-DCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       463 ~m~~~~----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      +..+..    . .....+|..+...|.+.|++++|.+.+++..
T Consensus       328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  370 (411)
T 4a1s_A          328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL  370 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            554421    0 0113355566666667777777766666654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.49  E-value=2.7e-12  Score=120.06  Aligned_cols=277  Identities=10%  Similarity=-0.052  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHH
Q 010320          193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDS----NLS-PNVFT  263 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~  263 (513)
                      +......+...|++++|+..|+++.+. . +.+    ...|..+...+...|++++|...+++..+.    +-. ....+
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQV-G-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhh-C-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            334445556666666666666666553 1 112    245555666666666666666666654421    111 12345


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHcCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 010320          264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPD----TNTYLLLLRGYAHSGN--------------------LPRMEKI  318 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a~~~  318 (513)
                      +..+...+...|++++|.+.+++..+..- .++    ..++..+...+...|+                    +++|.+.
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            66666777777777777777766543100 012    3466677777777777                    6666666


Q ss_pred             HHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 010320          319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH--  396 (513)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--  396 (513)
                      +++..+.               +...++                .......+..+...+...|++++|.+.+++..+.  
T Consensus       166 ~~~a~~~---------------~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          166 YEENLSL---------------VTALGD----------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHHHH---------------HHHHTC----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---------------HHhcCC----------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            6554321               000010                0000111224666677777888887777766542  


Q ss_pred             --CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----Ccc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 010320          397 --KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG----WRL-CRSLYHSKMVMYASQRRVEEMESVLKEMENYK-  468 (513)
Q Consensus       397 --~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-  468 (513)
                        +.......++..+...+...|++++|.+.+++..+..    ..+ ...++..+...|...|++++|...+++..+.. 
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence              1112223367778888889999999999888775321    111 14567778888999999999999998876531 


Q ss_pred             ---C-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          469 ---I-DCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       469 ---~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                         - .....++..+...|.+.|++++|.+.+++..+.
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence               1 112447778889999999999999999988765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.49  E-value=1.5e-12  Score=125.93  Aligned_cols=275  Identities=10%  Similarity=-0.052  Sum_probs=179.5

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH----hHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC-CCCHHH
Q 010320          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI----GTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANI-SPSIVT  228 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~-~p~~~~  228 (513)
                      ..+..+...+...|++++|.+.|++..+.+..+.    ..|..+...|...|++++|++.|++..+.   .+. .....+
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            3444566677888999999999999888765544    57888888899999999999998887642   111 123457


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHH
Q 010320          229 YNTLISVFGRLLLVDHMEAAFQEIKDS----N-LSPNVFTYNYLIAGYMTAWM-----------------WGKVEEIYQM  286 (513)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~  286 (513)
                      +..+...+...|++++|...|++..+.    + ......++..+...|...|+                 +++|++.+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            788888899999999999988887653    1 11134577888888889999                 8899888887


Q ss_pred             HHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC-Cc----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 010320          287 MKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG-KE----FPLIRAMICAYSKCSVTDRIKKIEAL  356 (513)
Q Consensus       287 m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~  356 (513)
                      ..+.    +-.+ ...++..+...+...|++++|.+.+++..+.... .+    ...+..                    
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------------  268 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN--------------------  268 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH--------------------
Confidence            6541    1111 2457888888999999999999999887653110 01    112333                    


Q ss_pred             HHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 010320          357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA  432 (513)
Q Consensus       357 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  432 (513)
                                      +...|...|++++|.+.+++.+...    .......++..+...|...|++++|.+.+++..+.
T Consensus       269 ----------------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  332 (411)
T 4a1s_A          269 ----------------LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI  332 (411)
T ss_dssp             ----------------HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                            4444555555555555555444311    11112345566666666777777777766665432


Q ss_pred             ----CC-cccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320          433 ----GW-RLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       433 ----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                          +. ......+..+...|.+.|++++|...|++..+.
T Consensus       333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence                11 112345666667777777777777777766653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.49  E-value=4.9e-12  Score=121.97  Aligned_cols=276  Identities=10%  Similarity=-0.072  Sum_probs=159.0

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDS----NLSP-  259 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-  259 (513)
                      ....+......+...|++++|+..|++..+. + +.+    ...|..+...+...|++++|...|++..+.    +-.| 
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV-G-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            5566777888899999999999999998875 1 223    357888888999999999999999887542    2111 


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHH
Q 010320          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPD----TNTYLLLLRGYAHSGN--------------------LPR  314 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~  314 (513)
                      ...++..+...|...|++++|...+++..+..- .++    ..++..+...+...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            245677888888899999999999988765210 012    4577788888888888                    777


Q ss_pred             HHHHHHHHHhc----cCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----ccchHHHHHHHHHhcCCHHH
Q 010320          315 MEKIYELVKHH----VDGK-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY----RPWLNVLLIRVYAKEDCLEE  385 (513)
Q Consensus       315 a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~  385 (513)
                      |.+.+++..+.    +..+ ...++..+...|...|++++|...++...+......    ....+..+...|...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            77777665442    1111 123445555555555555555444433322211111    11112234445555555555


Q ss_pred             HHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCcc-cHhhHHHHHHHHHhcCCHHH
Q 010320          386 MEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRL-CRSLYHSKMVMYASQRRVEE  456 (513)
Q Consensus       386 a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~  456 (513)
                      |...+++....    +.......++..+...|...|++++|.+.+++..+.    +-.+ ...++..+...|...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            55555554431    111111234444555555555555555555544322    1111 12334444455555555555


Q ss_pred             HHHHHHHHHh
Q 010320          457 MESVLKEMEN  466 (513)
Q Consensus       457 A~~~~~~m~~  466 (513)
                      |...+++..+
T Consensus       326 A~~~~~~al~  335 (406)
T 3sf4_A          326 AMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.48  E-value=1.1e-10  Score=105.99  Aligned_cols=228  Identities=11%  Similarity=-0.050  Sum_probs=143.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010320          225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYL  300 (513)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~  300 (513)
                      +..++..+...+...|++++|+..|++..+.   -+...+..+...|..    .|++++|++.|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            5667778888888888888888888888873   356777778888888    888888888888887765   677888


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 010320          301 LLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV  376 (513)
Q Consensus       301 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  376 (513)
                      .+...|..    .+++++|.+.|++..+.+   +...+..+...|...                                
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~--------------------------------  123 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG--------------------------------  123 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC--------------------------------
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC--------------------------------
Confidence            88888888    888888888888877653   444555555555440                                


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh--
Q 010320          377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS--  450 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~--  450 (513)
                      ....+++++|++.|++..+.+    +...+..+...|..    .+++++|.+.+++..+.+   +...+..+...|..  
T Consensus       124 ~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~  196 (273)
T 1ouv_A          124 KVVTRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGE  196 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred             CCcccCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence            000444555555555544432    12234444444554    556666666666555443   23444455555555  


Q ss_pred             --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCC
Q 010320          451 --QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       451 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  503 (513)
                        .+++++|...|++..+.+   +...+..+...|.+    .+++++|.+.|++..+.|
T Consensus       197 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          197 GATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence              566666666666655543   13445555555555    566666666666555443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.48  E-value=5.4e-12  Score=121.64  Aligned_cols=302  Identities=11%  Similarity=-0.062  Sum_probs=211.3

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCCC
Q 010320          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT----IGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISPS  225 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p~  225 (513)
                      ......+......+...|++++|...|++..+.+..+    ..+|..+...|...|++++|...|++....   .+..|.
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            3456666777888888999999999999988876544    357888888899999999999998876432   111122


Q ss_pred             -HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHccC--------------------HHH
Q 010320          226 -IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----VFTYNYLIAGYMTAWM--------------------WGK  279 (513)
Q Consensus       226 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~  279 (513)
                       ..++..+...+...|++++|...+++..+... .++    ..++..+...|...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence             45677888888999999999998888764210 012    4478888888888999                    888


Q ss_pred             HHHHHHHHHc----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC-CCc----HHHHHHHHHHHHhcCChhH
Q 010320          280 VEEIYQMMKA----GPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD-GKE----FPLIRAMICAYSKCSVTDR  349 (513)
Q Consensus       280 a~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~  349 (513)
                      |.+.+++...    .+-.+ ...++..+...+...|++++|.+.+++..+... .++    ..++..+...|...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            8888887654    12112 245778888889999999999999988765311 111    3367788888999999988


Q ss_pred             HHHHHHHHHhCCCC----CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHH
Q 010320          350 IKKIEALMRLIPEK----EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDK  421 (513)
Q Consensus       350 a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~  421 (513)
                      |...++....+...    ......+..+...|...|++++|.+.+++....    +..+....++..+...|...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            87776544433221    111222335788899999999999999887653    2222235567888999999999999


Q ss_pred             HHHHHHHHHhc----CCcc-cHhhHHHHHHHHHhcCCH
Q 010320          422 LANFVKRAESA----GWRL-CRSLYHSKMVMYASQRRV  454 (513)
Q Consensus       422 a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~  454 (513)
                      |.+.+++..+.    +..+ ...++..+...+...|+.
T Consensus       326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            99999987542    2221 234455666666665554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.47  E-value=2.8e-12  Score=114.19  Aligned_cols=200  Identities=10%  Similarity=0.029  Sum_probs=122.4

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      ....|..+...+...|++++|+..|+++.+.  .+.+...+..+...+...|++++|+..|++..+... .+..+|..+.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la   98 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG   98 (243)
T ss_dssp             --------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence            4567888888889999999999999998863  345678888889999999999999999999887643 3678888888


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChh
Q 010320          269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD  348 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  348 (513)
                      ..+...|++++|.+.|+++.+.. ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|.+.|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence            89999999999999999887743 2357788888888899999999999998887753 234455555555555555555


Q ss_pred             HHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          349 RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE  395 (513)
Q Consensus       349 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  395 (513)
                      +|...++...+........+  ..+...|...|++++|.+.+++..+
T Consensus       177 ~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          177 EALSQFAAVTEQDPGHADAF--YNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHH--HHHHHHHHHccCHHHHHHHHHHHHc
Confidence            55444443333322222111  1244444444444444444444444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.47  E-value=5.9e-12  Score=117.76  Aligned_cols=279  Identities=11%  Similarity=-0.049  Sum_probs=194.8

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCC-CHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKT----IGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISP-SIVTY  229 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p-~~~~~  229 (513)
                      .+......+...|++++|...|++..+..+.+    ...|..+...|...|++++|++.|++....   .+..| ...++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            34455667788999999999999998876555    467888999999999999999999886532   11112 24578


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHccC--------------------HHHHHHHH
Q 010320          230 NTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----VFTYNYLIAGYMTAWM--------------------WGKVEEIY  284 (513)
Q Consensus       230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~  284 (513)
                      ..+...+...|++++|...+++..+... .++    ..++..+...+...|+                    +++|.+.+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            8888999999999999999988764211 122    3478888889999999                    99999888


Q ss_pred             HHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010320          285 QMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL  359 (513)
Q Consensus       285 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  359 (513)
                      ++....    +-.+ ...++..+...+...|++++|.+.+++..+...               +.++....         
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~~---------  222 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK---------------EFGDKAAE---------  222 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------------HHTCHHHH---------
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---------------hcCChHHH---------
Confidence            876531    1111 245777888888889999999988887664210               00000000         


Q ss_pred             CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---
Q 010320          360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA---  432 (513)
Q Consensus       360 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---  432 (513)
                             ...+..+...+...|++++|.+.+++....    +.......++..+...+...|++++|.+.++++.+.   
T Consensus       223 -------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          223 -------RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence                   001123566666777777777777765542    111122456777888888999999999998877543   


Q ss_pred             -CCc-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320          433 -GWR-LCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       433 -~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                       +.. ....++..+...|.+.|++++|...+++..+.
T Consensus       296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence             111 12446778888999999999999999988764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.45  E-value=2e-11  Score=116.88  Aligned_cols=235  Identities=6%  Similarity=-0.099  Sum_probs=138.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CC-CHHHHHH
Q 010320          233 ISVFGRLLLVDHMEAAFQEIKDSN-LSPN----VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MP-DTNTYLL  301 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p-~~~t~~~  301 (513)
                      ...+...|++++|...|++..+.- -.+|    ..+|..+...|...|++++|++.+++..+.    +- .+ ...++..
T Consensus       110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  189 (383)
T 3ulq_A          110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL  189 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            344455566666666665555320 0011    244555555555566666666555554431    10 01 1234455


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC
Q 010320          302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED  381 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  381 (513)
                      +...|...|++++|.+.+++..+.                               .............+..+...|...|
T Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~lg~~y~~~g  238 (383)
T 3ulq_A          190 FATNFLDLKQYEDAISHFQKAYSM-------------------------------AEAEKQPQLMGRTLYNIGLCKNSQS  238 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-------------------------------HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHH-------------------------------HHHcCChHHHHHHHHHHHHHHHHCC
Confidence            555555555555555555544332                               1111111111111224677777888


Q ss_pred             CHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCcccHhhHHHHHHHHHhcCC
Q 010320          382 CLEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRLCRSLYHSKMVMYASQRR  453 (513)
Q Consensus       382 ~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~  453 (513)
                      ++++|++.+++.++.    +..+....++..+...|...|++++|.+.+++..+.    +-......+..+...|...|+
T Consensus       239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~  318 (383)
T 3ulq_A          239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD  318 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred             CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence            888888888776652    222445667888889999999999999998877543    222223335667777888888


Q ss_pred             ---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          454 ---VEEMESVLKEMENYKIDC-SKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       454 ---~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                         +++|..++++.   +..+ ....+..+...|...|++++|.+.+++..+
T Consensus       319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               77777777765   2223 344677888999999999999999998754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.43  E-value=1.6e-12  Score=120.50  Aligned_cols=239  Identities=11%  Similarity=0.019  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC------CC
Q 010320          226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDS-------NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG------PV  292 (513)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~  292 (513)
                      ..++..+...+...|++++|..+|+++.+.       .......++..+...|...|++++|.+.|++....      +-
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            456777888888888888888888887752       12224566777777888888888888888777652      11


Q ss_pred             CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc------CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010320          293 MP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV------DGK-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE  364 (513)
Q Consensus       293 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  364 (513)
                      .| ...++..+...+...|++++|.+.++++.+..      ..+ ....+.                             
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------------------  157 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN-----------------------------  157 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-----------------------------
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH-----------------------------
Confidence            12 35667777777777888888877777765431      001 111122                             


Q ss_pred             cccchHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----
Q 010320          365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH------KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG-----  433 (513)
Q Consensus       365 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----  433 (513)
                             .+...+...|++++|.+.+++....      +..+....++..+...|...|++++|.++++++.+..     
T Consensus       158 -------~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  230 (311)
T 3nf1_A          158 -------NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF  230 (311)
T ss_dssp             -------HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence                   3556666677777777777666553      2244455567778888888888888888888776421     


Q ss_pred             --CcccHh-------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          434 --WRLCRS-------LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       434 --~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                        ..+...       .+..+...+...+.+.+|...++...... +.+..+|..+..+|.+.|++++|.+++++..+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             C------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              111111       12222333344555555666666665433 34567788899999999999999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.43  E-value=4.6e-11  Score=101.34  Aligned_cols=167  Identities=16%  Similarity=0.019  Sum_probs=147.6

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      +..+|..+...|.+.|++++|++.|++..+..+.+..+|..+...|.+.|++++|+..+......  .+-+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence            67889999999999999999999999999987779999999999999999999999999999875  3456778888889


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010320          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR  314 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  314 (513)
                      .+...++++.|...+++..+... -+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            99999999999999999887644 367889999999999999999999999988743 2357889999999999999999


Q ss_pred             HHHHHHHHHhc
Q 010320          315 MEKIYELVKHH  325 (513)
Q Consensus       315 a~~~~~~~~~~  325 (513)
                      |.+.|++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999998874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.40  E-value=4.2e-11  Score=117.06  Aligned_cols=305  Identities=12%  Similarity=-0.011  Sum_probs=143.1

Q ss_pred             CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010320          171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDK---CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA  247 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  247 (513)
                      +.++|.+.|++..+.|.++  .+..|...|...+..++   +.+.+...... |   +...+..|...|...+.++.+..
T Consensus        89 ~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~Lg~~y~~~~~~~~~~~  162 (452)
T 3e4b_A           89 EHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G---YPEAGLAQVLLYRTQGTYDQHLD  162 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred             CHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcccCHH
Confidence            5566666666666544332  55555555555544332   33333333322 2   23344555555555554433333


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHH
Q 010320          248 AFQEIKDSNLSPNVFTYNYLIAGYMTAW---MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS----GNLPRMEKIYE  320 (513)
Q Consensus       248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~  320 (513)
                      ....+.+.-...+...+..|...|.+.|   +.++|++.|++..+.| .++...+..|...|...    +++++|.+.|+
T Consensus       163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~  241 (452)
T 3e4b_A          163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE  241 (452)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            3222221111112225566666666666   6666666666666655 23444444555555433    46666666666


Q ss_pred             HHHhccCCCcHHHHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC-----CHHHHHHHHHH
Q 010320          321 LVKHHVDGKEFPLIRAMICA-Y--SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED-----CLEEMEKSIND  392 (513)
Q Consensus       321 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~  392 (513)
                      ... .|   +...+..|... |  ...++.++|.+.++...+.   +...-.+ .+...|. .|     ++++|.+.|++
T Consensus       242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---g~~~A~~-~Lg~~y~-~G~g~~~d~~~A~~~~~~  312 (452)
T 3e4b_A          242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---DQPRAEL-LLGKLYY-EGKWVPADAKAAEAHFEK  312 (452)
T ss_dssp             HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT---TCHHHHH-HHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred             HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC---CCHHHHH-HHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence            655 22   33444444444 2  3345555444443333222   2111111 2333443 33     66666666665


Q ss_pred             HHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 010320          393 AFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEM  464 (513)
Q Consensus       393 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m  464 (513)
                      .. .+    +...+..|...|..    ..+.++|.++|++..+.|.   ......|...|..    ..+.++|...|+..
T Consensus       313 Aa-~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  384 (452)
T 3e4b_A          313 AV-GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLA  384 (452)
T ss_dssp             TT-TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred             Hh-CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            54 21    22334444444444    2366666666666665552   2333344444442    34666666666666


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          465 ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       465 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      .+.|. ++.......+......++.++|.++.++.+
T Consensus       385 ~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~  419 (452)
T 3e4b_A          385 KAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQEL  419 (452)
T ss_dssp             HTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            66652 222222222222233334455555555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.39  E-value=1.1e-09  Score=101.34  Aligned_cols=177  Identities=9%  Similarity=-0.004  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHhccCCCHhHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 010320          173 DLAADLFAEAANKHLKTIGTYNALLGAYMY-------NGLS-------DKCQSLFRDLKKEANISP-SIVTYNTLISVFG  237 (513)
Q Consensus       173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~  237 (513)
                      ++|..+|++.....+.+...|..++..+..       .|++       ++|..+|++..+  .+.| +...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHHHH
Confidence            678888888888766688888888887763       4775       889999988885  2345 4567888888888


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-hcCChHH
Q 010320          238 RLLLVDHMEAAFQEIKDSNLSPN-VF-TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA-HSGNLPR  314 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~  314 (513)
                      +.|++++|..+|++..+.  .|+ .. +|..+...+.+.|++++|.++|++..+.+ ..+...|........ ..|++++
T Consensus       111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence            889999999999988874  343 33 78888888888888999999888888743 223444443333322 2688888


Q ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010320          315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA  355 (513)
Q Consensus       315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  355 (513)
                      |.++|+...+.. +.+...|..++..+.+.|++++|..+++
T Consensus       188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~  227 (308)
T 2ond_A          188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFE  227 (308)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            888888877652 2345555555555555554444444433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.38  E-value=4.7e-11  Score=117.46  Aligned_cols=207  Identities=10%  Similarity=-0.043  Sum_probs=173.6

Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCH-HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010320          134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV-DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL  212 (513)
Q Consensus       134 ~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  212 (513)
                      .+.++..++.....    .+.+...+..+...+...|++ ++|.+.|++..+..+.+...|..+...|...|++++|++.
T Consensus        84 ~~~al~~l~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           84 MEKTLQQMEEVLGS----AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHTT----CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcc----CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            44555666654432    345888999999999999999 9999999999988777899999999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------c
Q 010320          213 FRDLKKEANISPSIVTYNTLISVFGRL---------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA--------W  275 (513)
Q Consensus       213 ~~~m~~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g  275 (513)
                      |++..+.   .|+...+..+...+...         |++++|+..|++..+... -+...|..+..+|...        |
T Consensus       160 ~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          160 FSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccc
Confidence            9999853   68888999999999999         999999999999998654 3688899999999998        9


Q ss_pred             CHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010320          276 MWGKVEEIYQMMKAGPVMP----DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK  351 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  351 (513)
                      ++++|++.|++..+.  .|    +...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.
T Consensus       236 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          236 ISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999874  34    78899999999999999999999999988863 345667777777777777555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.37  E-value=9.4e-10  Score=101.76  Aligned_cols=236  Identities=8%  Similarity=0.022  Sum_probs=152.0

Q ss_pred             CHhHHHHHHHHHHHc----CCh----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHH
Q 010320          189 TIGTYNALLGAYMYN----GLS----DKCQSLFRDLKKEANISPSIVTYNTLISVFGR-------LLLV-------DHME  246 (513)
Q Consensus       189 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~  246 (513)
                      +...|...+...-+.    ++.    ++|..+|++....  .+-+...|..++..+..       .|++       ++|.
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~   84 (308)
T 2ond_A            7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA   84 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence            455677777654443    232    6777888887764  24566677777776653       4665       7778


Q ss_pred             HHHHHHHHC-CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320          247 AAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TN-TYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       247 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      .+|++..+. .. -+...|..+...+.+.|++++|.++|++..+  +.|+ .. .|..+...+.+.|++++|..+|++..
T Consensus        85 ~~~~rAl~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  161 (308)
T 2ond_A           85 NIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            888777762 22 2456777777777777888888888887776  3443 22 67777777777777777777777776


Q ss_pred             hccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010320          324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV  403 (513)
Q Consensus       324 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  403 (513)
                      +... .+...|......                                   .+...|++++|.++|++.++..  |.+.
T Consensus       162 ~~~p-~~~~~~~~~a~~-----------------------------------~~~~~~~~~~A~~~~~~al~~~--p~~~  203 (308)
T 2ond_A          162 EDAR-TRHHVYVTAALM-----------------------------------EYYCSKDKSVAFKIFELGLKKY--GDIP  203 (308)
T ss_dssp             TSTT-CCTHHHHHHHHH-----------------------------------HHHTSCCHHHHHHHHHHHHHHH--TTCH
T ss_pred             hcCC-CCHHHHHHHHHH-----------------------------------HHHHcCCHHHHHHHHHHHHHhC--CCcH
Confidence            6432 222222111100                                   0112477777777777776632  3455


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Ccc--cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320          404 RIMRCIVSSYFRCNAVDKLANFVKRAESAG-WRL--CRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      ..|..++..+.+.|++++|..+|++..... +.|  ....|..++..+.+.|+.++|..+++++.+.
T Consensus       204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            667777777777788888888888777652 343  3556777777777778888888887777654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.36  E-value=2.2e-11  Score=112.63  Aligned_cols=242  Identities=15%  Similarity=0.066  Sum_probs=165.1

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc-------cCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Q 010320          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-------HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA---  220 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---  220 (513)
                      .+.+..++..+...+...|++++|..+|+++.+.       ..+ ...++..+...|...|++++|++.|++.....   
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3445677888889999999999999999998773       233 67788999999999999999999999887531   


Q ss_pred             --C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320          221 --N-ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS------NLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       221 --g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                        + ......++..+...+...|++++|...|++..+.      +-.| ...++..+...+...|++++|+++|+++.+.
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              1 1223567888999999999999999999988764      2222 3466888889999999999999999998763


Q ss_pred             ------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-------CCCcH-H------HHHHHHHHHHhcCChhH
Q 010320          291 ------PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-------DGKEF-P------LIRAMICAYSKCSVTDR  349 (513)
Q Consensus       291 ------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-~------~~~~li~~~~~~g~~~~  349 (513)
                            +-.| ...++..+...+...|++++|.+.++++.+..       ..+.. .      .+..+...+...+.+..
T Consensus       183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
T 3nf1_A          183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE  262 (311)
T ss_dssp             HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence                  2123 25678889999999999999999999887531       11111 1      11122222222233332


Q ss_pred             HHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          350 IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE  395 (513)
Q Consensus       350 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  395 (513)
                      +...++......  ......+..+...|...|++++|.+.|++.++
T Consensus       263 a~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          263 YGGWYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             CC---------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            222222221111  11122233688999999999999999998775

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.36  E-value=5.2e-11  Score=116.42  Aligned_cols=340  Identities=9%  Similarity=-0.025  Sum_probs=218.5

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCH---HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC---
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV---DLAADLFAEAANKHLKTIGTYNALLGAYMYNG---  204 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g---  204 (513)
                      .++.+.|.+.|+...+.+      +...+..|...|...|+.   ++|.++|++..+.   +...+..|...+...+   
T Consensus        16 ~g~~~~A~~~~~~aa~~g------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~   86 (452)
T 3e4b_A           16 RGDTVTAQQNYQQLAELG------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGAT   86 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHT------CCTGGGTCC-------------------------------CHHHHHHHHHTC--CC
T ss_pred             CCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCC
Confidence            468889999999887764      445566677777778888   8999999998865   6667777777566655   


Q ss_pred             --ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010320          205 --LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH---MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK  279 (513)
Q Consensus       205 --~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  279 (513)
                        +.++|++.|++.... |. ++  .+..|...|...+..+.   +.+.+....+.|   +...+..|...|...+.+++
T Consensus        87 ~~~~~~A~~~~~~Aa~~-g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           87 EAEHHEAESLLKKAFAN-GE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             HHHHHHHHHHHHHHHHT-TC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred             CcCHHHHHHHHHHHHHC-CC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence              788999999999874 42 23  67777777777665443   455555555444   34566777788888775555


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc----CChhHHHH
Q 010320          280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG---NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC----SVTDRIKK  352 (513)
Q Consensus       280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~  352 (513)
                      +......+.+.-...+...+..|...|...|   +.++|.+.|+...+.|. ++...+..|...|...    ++.++|.+
T Consensus       160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~  238 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQA  238 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            4444333322111223338888999999999   89999999999998864 4555556677777654    56665555


Q ss_pred             HHHHHHhCCCCCcccchHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC-----cHHHHHH
Q 010320          353 IEALMRLIPEKEYRPWLNVLLIRV-Y--AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN-----AVDKLAN  424 (513)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~  424 (513)
                      .++..   . ++...-.+ .+... +  ...+++++|.+.|++..+.+    +...+..+...|. .|     ++++|.+
T Consensus       239 ~~~~a---a-~g~~~a~~-~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~  308 (452)
T 3e4b_A          239 LLEKI---A-PGYPASWV-SLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEA  308 (452)
T ss_dssp             HHHHH---G-GGSTHHHH-HHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred             HHHHH---c-CCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence            54443   3 33333223 35554 3  46899999999999998865    3445666777776 55     9999999


Q ss_pred             HHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 010320          425 FVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVL  496 (513)
Q Consensus       425 ~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~  496 (513)
                      +|++.. .|   +...+..|...|..    ..++++|...|++..+.|.   ......|...|..    ..+.++|..+|
T Consensus       309 ~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~  381 (452)
T 3e4b_A          309 HFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFS  381 (452)
T ss_dssp             HHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred             HHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence            999887 44   55666677777765    4599999999999998874   3355666667764    56899999999


Q ss_pred             HHHHHCCC
Q 010320          497 GLMCKNGY  504 (513)
Q Consensus       497 ~~m~~~g~  504 (513)
                      ++..+.|.
T Consensus       382 ~~A~~~g~  389 (452)
T 3e4b_A          382 QLAKAQDT  389 (452)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHCCC
Confidence            99988875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.35  E-value=1.4e-10  Score=111.11  Aligned_cols=233  Identities=10%  Similarity=0.015  Sum_probs=118.1

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhcc--CC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHHHH
Q 010320          163 IKFAGRINNVDLAADLFAEAANKH--LK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-----IVTYNT  231 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~--~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~~~~~  231 (513)
                      ...+...|++++|.+.|++..+.-  .+    ...+|..+...|...|++++|+..+++......-.++     ..+++.
T Consensus       110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  189 (383)
T 3ulq_A          110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL  189 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            334455666666666666655421  11    2345666666666666666666666655432111111     235555


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CCCHHHHHH
Q 010320          232 LISVFGRLLLVDHMEAAFQEIKDSNLS-PN----VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MPDTNTYLL  301 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~  301 (513)
                      +...|...|++++|+..|++..+.... ++    ..+|+.+...|...|++++|++.|++..+.    +. .....++..
T Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  269 (383)
T 3ulq_A          190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL  269 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            666666666666666666655532100 11    134555666666666666666666655441    22 222455566


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC
Q 010320          302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED  381 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  381 (513)
                      +...+.+.|++++|.+.+++..+..                               .....+..... ...+...+...|
T Consensus       270 l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~-~~~l~~~~~~~~  317 (383)
T 3ulq_A          270 ITQIHYKLGKIDKAHEYHSKGMAYS-------------------------------QKAGDVIYLSE-FEFLKSLYLSGP  317 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHH-HHHHHHHHTSSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHHHHH-HHHHHHHHhCCC
Confidence            6666666666666666665544321                               00001111111 112444444555


Q ss_pred             C---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010320          382 C---LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE  430 (513)
Q Consensus       382 ~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  430 (513)
                      +   +++|+.++++.   +..+.....+..+...|...|++++|.+.+++..
T Consensus       318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE  366 (383)
T ss_dssp             CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5   45555554443   2222233455566666777777777777776654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.33  E-value=6e-11  Score=116.74  Aligned_cols=148  Identities=10%  Similarity=-0.022  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010320          172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS-DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ  250 (513)
Q Consensus       172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~  250 (513)
                      ++++.+.+++.......+...|..+...|...|++ ++|++.|++..+.  -+-+...|..+..+|.+.|++++|++.|+
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55555555555444333566666666666666666 6666666666543  12235566666666666666666666666


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--------CChH
Q 010320          251 EIKDSNLSPNVFTYNYLIAGYMTA---------WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS--------GNLP  313 (513)
Q Consensus       251 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------g~~~  313 (513)
                      +..+..  |+...|..+...|...         |++++|++.|++..+.. .-+...|..+..+|...        |+++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            665542  4455555566666555         56666666666555422 11345555555555555        5555


Q ss_pred             HHHHHHHHHHh
Q 010320          314 RMEKIYELVKH  324 (513)
Q Consensus       314 ~a~~~~~~~~~  324 (513)
                      +|.+.|++..+
T Consensus       239 ~A~~~~~~al~  249 (474)
T 4abn_A          239 QALSAYAQAEK  249 (474)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.32  E-value=2.7e-10  Score=96.32  Aligned_cols=166  Identities=10%  Similarity=0.020  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      ...|..+...+...|++++|.+.|+++.+..+.+...+..+...+...|++++|.+.|+++.+.  .+.+...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence            3456667777888888888888888887765557788888888888888888888888888764  24467788888888


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010320          236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a  315 (513)
                      +...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|++++|
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence            8888888888888888876543 367778888888888888888888888877643 23567788888888888888888


Q ss_pred             HHHHHHHHhc
Q 010320          316 EKIYELVKHH  325 (513)
Q Consensus       316 ~~~~~~~~~~  325 (513)
                      .+.++...+.
T Consensus       164 ~~~~~~~~~~  173 (186)
T 3as5_A          164 LPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            8888877654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.31  E-value=3.3e-10  Score=96.03  Aligned_cols=166  Identities=11%  Similarity=0.034  Sum_probs=95.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHH
Q 010320          295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI  374 (513)
Q Consensus       295 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li  374 (513)
                      +...|..+...|...|++++|++.|++..+.. +.+...+..+..+|.+.|+++++...+.............+.  .+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY--ILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH--HHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH--HHH
Confidence            56677888888888888888888888877753 345666666666666666666665555544444333332221  344


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH
Q 010320          375 RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV  454 (513)
Q Consensus       375 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  454 (513)
                      ..+...++++.|.+.+.+.....  |.+...+..+...|...|++++|++.+++..+... -+...|..+..+|.+.|++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCH
Confidence            45555555666665555555422  23344455555555555555555555555544332 1344455555555555555


Q ss_pred             HHHHHHHHHHHh
Q 010320          455 EEMESVLKEMEN  466 (513)
Q Consensus       455 ~~A~~~~~~m~~  466 (513)
                      ++|.+.|++..+
T Consensus       158 ~~A~~~~~~al~  169 (184)
T 3vtx_A          158 DEAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            555555555554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.31  E-value=6.9e-10  Score=105.97  Aligned_cols=315  Identities=8%  Similarity=-0.026  Sum_probs=169.1

Q ss_pred             CCCCHHHHHHHHHHh--cccCCHHHHHHHHHHHHhcc--CC---CHhHHHHHHHH--HHHcCChHHHH---------HHH
Q 010320          152 TPMTKEEYTKGIKFA--GRINNVDLAADLFAEAANKH--LK---TIGTYNALLGA--YMYNGLSDKCQ---------SLF  213 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~~--~~---~~~~~~~li~~--~~~~g~~~~A~---------~~~  213 (513)
                      +.|+..+-+.|-.+|  .+.+++++|.++++++....  ..   +...|-.++..  ....+..+.+.         +.+
T Consensus         6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l   85 (378)
T 3q15_A            6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL   85 (378)
T ss_dssp             CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence            445666667777777  67788888888888765532  11   23333444332  11122333333         444


Q ss_pred             HHHHHhCCCCCCH-H---HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHccCHHHHHHHH
Q 010320          214 RDLKKEANISPSI-V---TYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----VFTYNYLIAGYMTAWMWGKVEEIY  284 (513)
Q Consensus       214 ~~m~~~~g~~p~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~  284 (513)
                      +.+... ....+. .   .|......+...|++++|+..|++..+... .++    ..++..+...|...|++++|...+
T Consensus        86 ~~i~~~-~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~  164 (378)
T 3q15_A           86 ETIETP-QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI  164 (378)
T ss_dssp             HHHHGG-GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhcc-CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            444321 000010 0   112233334555666666666665553210 012    234555555556666666666655


Q ss_pred             HHHHcC----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010320          285 QMMKAG----P-VMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR  358 (513)
Q Consensus       285 ~~m~~~----g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  358 (513)
                      ++..+.    + ..+ ...+++.+...|...|++++|.+.+++..+.                               ..
T Consensus       165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~-------------------------------~~  213 (378)
T 3q15_A          165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL-------------------------------AM  213 (378)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------HH
T ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------------------------------HH
Confidence            554431    1 011 1334555555555566666665555554331                               11


Q ss_pred             hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-
Q 010320          359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH---KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW-  434 (513)
Q Consensus       359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-  434 (513)
                      ...........+..+...|...|++++|++.+++.+..   ...+....++..+...|.+.|++++|.+.+++..+... 
T Consensus       214 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          214 DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            11111111111223666777778888888887776651   12233456677888888888999999988888765321 


Q ss_pred             ---cccHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          435 ---RLCRSLYHSKMVMYASQRR---VEEMESVLKEMENYKIDC-SKKTFWIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       435 ---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                         ......+..+...|...++   +++|..++++.   +..+ ....+..+...|...|++++|.+.|++..+
T Consensus       294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               1123345555566667777   77777777662   2222 234566788889999999999988887653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.30  E-value=3.2e-09  Score=101.04  Aligned_cols=303  Identities=9%  Similarity=-0.022  Sum_probs=202.4

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----
Q 010320          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-I----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----  260 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----  260 (513)
                      ..+......+...|++++|...+++.....  +++ .    ..++.+...+...|++++|...+++..+... ..+    
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            344555566778999999999999988642  222 2    2566777888899999999999998775211 112    


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC----C
Q 010320          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVM--PD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG----K  329 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~  329 (513)
                      ..+++.+...+...|++++|.+.+++....    +..  |. ...+..+...+...|++++|...+++..+....    .
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  172 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  172 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence            234667778889999999999999987652    222  32 456677888899999999999999988764322    1


Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCcc-cchHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ch
Q 010320          330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLI-PEKEYR-PWLNV---LLIRVYAKEDCLEEMEKSINDAFEHKTSV--TT  402 (513)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~-~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~  402 (513)
                      ....+..+...+...|++++|...++..... ...+.. .+...   ..+..+...|++++|...+++........  ..
T Consensus       173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  252 (373)
T 1hz4_A          173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL  252 (373)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence            2456777888888889988888777665544 222222 22111   12234668899999999888876543221  11


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCcccH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320          403 VRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLCR-SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW  477 (513)
Q Consensus       403 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~  477 (513)
                      ...+..+...+...|++++|.+.++....    .|..++. ..+..+..++...|+.++|...+++.....-  .    .
T Consensus       253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~  326 (373)
T 1hz4_A          253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----T  326 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----H
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----c
Confidence            23456677888888999999888887643    2322232 3556667778888999999998888876421  0    1


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          478 IMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       478 ~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      -.+..+...|  +....+++.+....
T Consensus       327 g~~~~~~~~g--~~~~~ll~~~~~~~  350 (373)
T 1hz4_A          327 GFISHFVIEG--EAMAQQLRQLIQLN  350 (373)
T ss_dssp             CCCHHHHTTH--HHHHHHHHHHHHTT
T ss_pred             cHHHHHHHcc--HHHHHHHHHHHhCC
Confidence            1224444444  56666777766543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.29  E-value=6.1e-08  Score=98.22  Aligned_cols=376  Identities=8%  Similarity=0.036  Sum_probs=217.9

Q ss_pred             chhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC---HHHHHHHHHHHHhccC--CCHh
Q 010320          119 NGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN---VDLAADLFAEAANKHL--KTIG  191 (513)
Q Consensus       119 ~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~--~~~~  191 (513)
                      |...|..++..+.  +..+.+..+|+.+...    +|.+...|...+..-.+.|+   ++.+.++|++.....+  +++.
T Consensus        65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~----fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~  140 (679)
T 4e6h_A           65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR----FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS  140 (679)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence            6667777777662  4566677777777654    56677777777777777777   8888888888777653  5777


Q ss_pred             HHHHHHHHHHHcCCh--------HHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHH
Q 010320          192 TYNALLGAYMYNGLS--------DKCQSLFRDLKKEANI-SPS-IVTYNTLISVFGR---------LLLVDHMEAAFQEI  252 (513)
Q Consensus       192 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~g~-~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m  252 (513)
                      .|..-+....+.++.        +.+.++|+......|. .++ ...|...+.....         .++++.+..+|++.
T Consensus       141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra  220 (679)
T 4e6h_A          141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL  220 (679)
T ss_dssp             HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence            777777665554443        3344677766655565 443 4566666654432         23456677777777


Q ss_pred             HHCCCCCCHHHHHH---HHHHH----------HHccCHHHHHHH------------------------------------
Q 010320          253 KDSNLSPNVFTYNY---LIAGY----------MTAWMWGKVEEI------------------------------------  283 (513)
Q Consensus       253 ~~~g~~p~~~~~~~---li~~~----------~~~g~~~~a~~~------------------------------------  283 (513)
                      +......-..+|..   +-..+          -...+++.|...                                    
T Consensus       221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~  300 (679)
T 4e6h_A          221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ  300 (679)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred             HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence            64311111122211   11110          000112222222                                    


Q ss_pred             -------------------------------HHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhccCCCcH
Q 010320          284 -------------------------------YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME-KIYELVKHHVDGKEF  331 (513)
Q Consensus       284 -------------------------------~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~  331 (513)
                                                     |++.... +.-+...|...+.-+...|+.++|. ++|++.... .+.+.
T Consensus       301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~  378 (679)
T 4e6h_A          301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA  378 (679)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred             HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence                                           3332221 1112334444444455667777775 888777764 44566


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----------CC----------cccchHHHHHHHHHhcCCHHHHHHHHH
Q 010320          332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPE----------KE----------YRPWLNVLLIRVYAKEDCLEEMEKSIN  391 (513)
Q Consensus       332 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~  391 (513)
                      ..|-..+...-+.|++++|.++++.+.....          +.          ..+..+...+....+.|..+.|..+|.
T Consensus       379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~  458 (679)
T 4e6h_A          379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG  458 (679)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6677777777778888877777665543210          10          011112245555566777888888888


Q ss_pred             HHHhc-CCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010320          392 DAFEH-KTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI  469 (513)
Q Consensus       392 ~~~~~-~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  469 (513)
                      +..+. +.....  +|...+..-.+. ++.+.|.++|+...+. +.-+...+...++.....|+.+.|..+|++......
T Consensus       459 ~A~~~~~~~~~~--lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          459 KCRRLKKLVTPD--IYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHHTGGGSCTH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHHHhcCCCChH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence            87765 222222  232222222233 4578888888877654 223455566777777778888888888888876542


Q ss_pred             CC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          470 DC--SKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       470 ~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      .+  ....|...+..-.+.|+.+.+.++.++|.+.-
T Consensus       536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            11  34567777777778888888888888887653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.27  E-value=2.4e-10  Score=117.12  Aligned_cols=167  Identities=10%  Similarity=0.058  Sum_probs=149.2

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      |-+..+|+.|..+|.+.|++++|++.|++..+..+.+..+|+.+..+|.+.|++++|++.|++..+.  -+-+...|+.+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL   83 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM   83 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            3467889999999999999999999999999987778999999999999999999999999999875  13357899999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010320          233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGN  311 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~  311 (513)
                      ..++.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++..+  +.|+ ...|..+..++...|+
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhccc
Confidence            99999999999999999999986542 688999999999999999999999999988  3454 8899999999999999


Q ss_pred             hHHHHHHHHHHHh
Q 010320          312 LPRMEKIYELVKH  324 (513)
Q Consensus       312 ~~~a~~~~~~~~~  324 (513)
                      +++|.+.+++..+
T Consensus       161 ~~~A~~~~~kal~  173 (723)
T 4gyw_A          161 WTDYDERMKKLVS  173 (723)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.27  E-value=1.4e-08  Score=96.49  Aligned_cols=302  Identities=10%  Similarity=-0.024  Sum_probs=204.7

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHhccCC-CH----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHH
Q 010320          159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TI----GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTY  229 (513)
Q Consensus       159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~  229 (513)
                      +......+...|++++|...+++....... +.    .+++.+...+...|++++|.+.+++......-..+.    .++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            344455667899999999999998775543 32    256777788999999999999999876531112233    346


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC----CCCHHH
Q 010320          230 NTLISVFGRLLLVDHMEAAFQEIKDS----NLS--P-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV----MPDTNT  298 (513)
Q Consensus       230 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~t  298 (513)
                      +.+...+...|++++|...+++..+.    +..  | ...++..+...+...|++++|...+++.....-    .....+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            77888899999999999999988752    221  2 245667788889999999999999999775321    112467


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhccCCCc--HHHHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCCccc--chH
Q 010320          299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE--FPLIR----AMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLN  370 (513)
Q Consensus       299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~  370 (513)
                      +..+...+...|++++|...+++..+....++  .....    ..+..+...|+++.+...++............  ...
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            88889999999999999999998876422211  12111    23345778998887766654443322211111  112


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCch-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010320          371 VLLIRVYAKEDCLEEMEKSINDAFEHK---TSVTT-VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV  446 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  446 (513)
                      ..+...+...|++++|...+++.....   ..+.. ..++..+..++...|+.++|...+++.......  .    -.+.
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~--~----g~~~  330 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR--T----GFIS  330 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--H----CCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc--c----cHHH
Confidence            346788889999999999998876531   11112 235666778889999999999999988653211  1    1223


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCC
Q 010320          447 MYASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       447 ~~~~~g~~~~A~~~~~~m~~~~  468 (513)
                      .+...|  +....+++.+...+
T Consensus       331 ~~~~~g--~~~~~ll~~~~~~~  350 (373)
T 1hz4_A          331 HFVIEG--EAMAQQLRQLIQLN  350 (373)
T ss_dssp             HHHTTH--HHHHHHHHHHHHTT
T ss_pred             HHHHcc--HHHHHHHHHHHhCC
Confidence            344444  56667777776654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.23  E-value=2e-09  Score=102.79  Aligned_cols=196  Identities=10%  Similarity=-0.013  Sum_probs=133.3

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhcc--CC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHHHH
Q 010320          163 IKFAGRINNVDLAADLFAEAANKH--LK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-----IVTYNT  231 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~--~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~~~~~  231 (513)
                      ...+...|++++|.+.|++..+..  .+    ...++..+...|...|++++|+..+++......-.++     ..+++.
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            344568899999999999877542  12    3567888888999999999999998887643111122     457788


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCCCCHHHHHH
Q 010320          232 LISVFGRLLLVDHMEAAFQEIKDS----NLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVMPDTNTYLL  301 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~  301 (513)
                      +..+|...|++++|++.|++..+.    +-.+ ...+++.+..+|...|++++|++.|++..+     .. .....++..
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~  266 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG  266 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence            888899999999999988887652    1111 235677788888888999999988888765     32 223677888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhccC----CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010320          302 LLRGYAHSGNLPRMEKIYELVKHHVD----GKEFPLIRAMICAYSKCSVTDRIKKIEALMRL  359 (513)
Q Consensus       302 ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  359 (513)
                      +...+.+.|++++|...+++..+...    +.....+..+...|...++.+...+++..+.+
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            88888888999999888888766321    12233344444455555553334444444444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=9.7e-10  Score=99.83  Aligned_cols=230  Identities=10%  Similarity=-0.001  Sum_probs=151.3

Q ss_pred             HHccCHHHHHHHHHHHHc-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------cCCC-cHHHHHHH
Q 010320          272 MTAWMWGKVEEIYQMMKA-------GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH------VDGK-EFPLIRAM  337 (513)
Q Consensus       272 ~~~g~~~~a~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l  337 (513)
                      ...|++++|+.+|++..+       ........++..+...+...|++++|...++++.+.      +..| ...++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            345677777777666544       222224678889999999999999999999998764      2222 45678889


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCC------CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHH
Q 010320          338 ICAYSKCSVTDRIKKIEALMRLIP------EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH------KTSVTTVRI  405 (513)
Q Consensus       338 i~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~  405 (513)
                      ...|...|++++|.+.++......      ........+..+...|...|++++|.+.+++.+..      +..+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999998887766555442      11111222335788888999999999999988775      234555677


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhc-------CCcccH-hhHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCC
Q 010320          406 MRCIVSSYFRCNAVDKLANFVKRAESA-------GWRLCR-SLYHSKMVMYASQRR------VEEMESVLKEMENYKIDC  471 (513)
Q Consensus       406 ~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~-~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p  471 (513)
                      +..+...|...|++++|.++++++.+.       ...+.. ..|..+...+...+.      +..+...++.... ..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            888899999999999999999987643       112222 223333333332222      2222222222211 1122


Q ss_pred             CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          472 SKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       472 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      ...++..+...|...|++++|.+++++..+.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3567888999999999999999999988753

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.18  E-value=2.4e-09  Score=90.33  Aligned_cols=164  Identities=10%  Similarity=-0.025  Sum_probs=127.8

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ...|..+...+...|++++|++.|+++.+.  .+.+...+..+...+...|++++|...++++.+... .+...|..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~   84 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence            456777888888999999999999988753  345678888888999999999999999999887643 36788888888


Q ss_pred             HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhH
Q 010320          270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR  349 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  349 (513)
                      .+...|++++|.+.++++.+.. ..+...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence            8999999999999999887643 3367788888888899999999999998887763 3455666666677777776666


Q ss_pred             HHHHHHHHH
Q 010320          350 IKKIEALMR  358 (513)
Q Consensus       350 a~~~~~~~~  358 (513)
                      |.+.++...
T Consensus       163 A~~~~~~~~  171 (186)
T 3as5_A          163 ALPHFKKAN  171 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            665554443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.18  E-value=2e-09  Score=110.33  Aligned_cols=165  Identities=11%  Similarity=-0.028  Sum_probs=145.5

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +..+|+.|...|.+.|++++|++.|++..+.  -+-+..+|+.+..++.+.|++++|++.|++..+.... +...|+.+.
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg   84 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            7889999999999999999999999999875  2345789999999999999999999999999986532 688999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010320          269 AGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT  347 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  347 (513)
                      .+|.+.|++++|++.|++..+.  .| +...|..+..+|.+.|++++|++.|++..+.. +.+...+..+..+|...|++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence            9999999999999999999873  45 48899999999999999999999999999863 44678899999999999999


Q ss_pred             hHHHHHHHHHHh
Q 010320          348 DRIKKIEALMRL  359 (513)
Q Consensus       348 ~~a~~~~~~~~~  359 (513)
                      ++|.+.++...+
T Consensus       162 ~~A~~~~~kal~  173 (723)
T 4gyw_A          162 TDYDERMKKLVS  173 (723)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            998887665544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.17  E-value=1.5e-09  Score=98.55  Aligned_cols=229  Identities=10%  Similarity=0.007  Sum_probs=154.4

Q ss_pred             HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC------CCCC-CHHHHHHH
Q 010320          237 GRLLLVDHMEAAFQEIKDS-------NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG------PVMP-DTNTYLLL  302 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~l  302 (513)
                      ...|+++.|+..|++..+.       .......++..+...|...|++++|++.|++..+.      +-.| ...++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567777777777776641       22224678899999999999999999999998753      2223 36788999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcc-------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC--CCcccch
Q 010320          303 LRGYAHSGNLPRMEKIYELVKHHV-------DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI----PE--KEYRPWL  369 (513)
Q Consensus       303 l~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~  369 (513)
                      ...+...|++++|.+.+++..+..       .+.....+..+...|...|++++|...++...+.    ..  .......
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999987641       1234667889999999999999998887666554    11  1111222


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCchHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhcCCcc
Q 010320          370 NVLLIRVYAKEDCLEEMEKSINDAFEH-------KTSVTTVRIMRCIVSSYFRCNA------VDKLANFVKRAESAGWRL  436 (513)
Q Consensus       370 ~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~~~~~~~~p  436 (513)
                      +..+...|...|++++|.+.+++..+.       ...+.....+..+...+...+.      +..+...++.... ....
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            335888999999999999999998763       1122222233333333333222      2222222222111 1123


Q ss_pred             cHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          437 CRSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      ....+..+...|...|++++|..+|++..+
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456688899999999999999999998775

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.16  E-value=9.4e-09  Score=90.31  Aligned_cols=198  Identities=10%  Similarity=-0.062  Sum_probs=131.4

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      .|+..+......+.+.|++++|.+.|++..+..+ ++...+..+..++...|++++|++.|++..+.  -+-+...|..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence            3567777788888888888888888888888776 56677777888888888888888888888763  12345677888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC---HHHHHHH
Q 010320          233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNV-------FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD---TNTYLLL  302 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~l  302 (513)
                      ..++...|++++|+..|++..+.... +.       ..|..+...+...|++++|++.|++..+.  .|+   ...|..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l  159 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence            88888888888888888888775322 34       45777777788888888888888888773  454   4566666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010320          303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE  364 (513)
Q Consensus       303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  364 (513)
                      ..++...|     ..+++.+...+. .+...|.....  ...+.+++|...++...++.+.+
T Consensus       160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~  213 (228)
T 4i17_A          160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNR  213 (228)
T ss_dssp             HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCC
Confidence            66665444     333444444321 22333333222  22233455555555555544443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.14  E-value=4.3e-07  Score=92.06  Aligned_cols=348  Identities=9%  Similarity=0.037  Sum_probs=212.7

Q ss_pred             CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCCCHHH
Q 010320          152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL---SDKCQSLFRDLKKEANISPSIVT  228 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~g~~p~~~~  228 (513)
                      .+.|...|..++..+.+.+.++.+..+|+.+...-+.....|..-+..-.+.|+   ++.+.++|++........|++..
T Consensus        62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L  141 (679)
T 4e6h_A           62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL  141 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred             CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence            456999999999999999999999999999998866688899999999888898   99999999999863111489999


Q ss_pred             HHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------HccCHHHHHHHHHHHH
Q 010320          229 YNTLISVFGRLLLV--------DHMEAAFQEIKD-SNL-SP-NVFTYNYLIAGYM---------TAWMWGKVEEIYQMMK  288 (513)
Q Consensus       229 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~  288 (513)
                      |..-+....+.++.        +.+.++|+.... .|. .+ +...|...+....         ..++++.+.++|+...
T Consensus       142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL  221 (679)
T 4e6h_A          142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL  221 (679)
T ss_dssp             HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence            99888877766654        334578887664 466 55 4578888876543         2345778889999888


Q ss_pred             cCCCCCCHHHHH---HHHHHHH----------hcCChHHHHHHHHH----------------------------------
Q 010320          289 AGPVMPDTNTYL---LLLRGYA----------HSGNLPRMEKIYEL----------------------------------  321 (513)
Q Consensus       289 ~~g~~p~~~t~~---~ll~~~~----------~~g~~~~a~~~~~~----------------------------------  321 (513)
                      ......-..+|.   .+...+.          ...+++.|...+.+                                  
T Consensus       222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q  301 (679)
T 4e6h_A          222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ  301 (679)
T ss_dssp             TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred             hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence            632111122221   1111100          00112222222222                                  


Q ss_pred             ---------------------------------HHhccCCCcHHHHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCccc
Q 010320          322 ---------------------------------VKHHVDGKEFPLIRAMICAYSKCSVTDRIK-KIEALMRLIPEKEYRP  367 (513)
Q Consensus       322 ---------------------------------~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~  367 (513)
                                                       .... .+.....|-..+..+...|+.+.|. ++++......+....-
T Consensus       302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L  380 (679)
T 4e6h_A          302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL  380 (679)
T ss_dssp             HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence                                             2221 1122233333333344445555553 5544443333333222


Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCc-----------hHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010320          368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHK---------TSVT-----------TVRIMRCIVSSYFRCNAVDKLANFVK  427 (513)
Q Consensus       368 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~  427 (513)
                      |.  ..+...-..|++++|.++|++++...         ..|+           ...+|...+....+.|+.+.|..+|.
T Consensus       381 wl--~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~  458 (679)
T 4e6h_A          381 AF--SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG  458 (679)
T ss_dssp             HH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HH--HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            32  35555666778888888887776531         0121           23356666776677778888888888


Q ss_pred             HHHhcCCcccHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          428 RAESAGWRLCRSLYHSKMVMYASQ-RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       428 ~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ++.+.........|...+..-.+. ++.+.|.++|+...+. ++-+...|...++.....|+.+.|..+|++.....
T Consensus       459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~  534 (679)
T 4e6h_A          459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI  534 (679)
T ss_dssp             HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            776541111223333332223333 3478888888877765 34456666677777777888888888888776654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.11  E-value=5.1e-08  Score=85.54  Aligned_cols=213  Identities=8%  Similarity=-0.026  Sum_probs=134.7

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHH
Q 010320          224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLL  302 (513)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l  302 (513)
                      .|...+......+...|++++|+..|++..+....++...+..+..++.+.|++++|++.|++..+.  .| +...|..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence            3556677777777777777777777777776554356666666777788888888888888887763  34 36677778


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010320          303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC  382 (513)
Q Consensus       303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  382 (513)
                      ...+...|++++|.+.+++..+.. +.+...+..+...+.                             .+...+...|+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~-----------------------------~~g~~~~~~~~  132 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYL-----------------------------KEGQKFQQAGN  132 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH-----------------------------HHHHHHHHTTC
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH-----------------------------HHhHHHHHhcc
Confidence            888888888888888888877753 223333232222222                             24555667788


Q ss_pred             HHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHH
Q 010320          383 LEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESV  460 (513)
Q Consensus       383 ~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  460 (513)
                      +++|++.|++.++.  .|.  +...+..+...|...|+     .+++++...+. .+...|....  ....+.+++|...
T Consensus       133 ~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~  202 (228)
T 4i17_A          133 IEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDY  202 (228)
T ss_dssp             HHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHH
Confidence            88888888887773  454  45666667666654443     34444444332 1233343332  2345668888888


Q ss_pred             HHHHHhCCCCCCHHHHHHH
Q 010320          461 LKEMENYKIDCSKKTFWIM  479 (513)
Q Consensus       461 ~~~m~~~~~~p~~~~~~~l  479 (513)
                      |++..+.. +-+..+...+
T Consensus       203 ~~~a~~l~-p~~~~~~~~l  220 (228)
T 4i17_A          203 LGEAVTLS-PNRTEIKQMQ  220 (228)
T ss_dssp             HHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHhhcC-CCCHHHHHHH
Confidence            88888754 3334444333

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.10  E-value=6.9e-09  Score=82.27  Aligned_cols=129  Identities=13%  Similarity=0.078  Sum_probs=72.7

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .|..+...+...|++++|.++|+++.+.+..+...|..+...+...|++++|...|+++...  .+.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence            34455555566666666666666665554445555666666666666666666666666543  1334455555555666


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ..|++++|...++++.+... .+..++..+...+.+.|++++|.+.|+++..
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            66666666666665554322 2345555555555555555555555555543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.07  E-value=2.4e-08  Score=91.40  Aligned_cols=96  Identities=14%  Similarity=0.044  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--C-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 010320          207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRL--L-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI  283 (513)
Q Consensus       207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~--g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  283 (513)
                      .+|.+++.+..+.  +++....| .+   + +.  + ++++|...|++.               ...|...|++++|.+.
T Consensus         2 ~~a~~~~~~a~k~--~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~   59 (292)
T 1qqe_A            2 SDPVELLKRAEKK--GVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDS   59 (292)
T ss_dssp             CCHHHHHHHHHHH--SSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHH
T ss_pred             CcHHHHHHHHHHH--hCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence            3566777777664  33322222 22   1 22  2 477777777766               3356677888888888


Q ss_pred             HHHHHcC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010320          284 YQMMKAG----PVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       284 ~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      |++..+.    |-.++ ..+|+.+..+|...|++++|...+++..+
T Consensus        60 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~  105 (292)
T 1qqe_A           60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8776542    21222 56788888888888999988888887665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.02  E-value=2.8e-08  Score=78.62  Aligned_cols=131  Identities=14%  Similarity=0.100  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010320          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG  270 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (513)
                      ..|..+...+...|++++|+.+|+++.+.  .+.+...+..+...+...|++++|...|+++.+.+. .+...|..+...
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~   78 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNA   78 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHH
Confidence            35778888899999999999999998865  245677888888999999999999999999887653 367788888889


Q ss_pred             HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320          271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      +.+.|++++|.++++++.+.. ..+..++..+...+...|++++|...++++.+.
T Consensus        79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            999999999999999887743 235778888889999999999999999888764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.00  E-value=4.5e-08  Score=87.94  Aligned_cols=171  Identities=13%  Similarity=0.032  Sum_probs=125.0

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHH
Q 010320          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTY  229 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~  229 (513)
                      .+...+-.+...+.+.|++++|.+.|+++.+..+.+   ...+..+..+|.+.|++++|+..|++..+...-.|+ ...+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            366677777788888999999999999988876545   678888888899999999999999998875211122 4567


Q ss_pred             HHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHH
Q 010320          230 NTLISVFGR--------LLLVDHMEAAFQEIKDSNLSPNVFTY-----------------NYLIAGYMTAWMWGKVEEIY  284 (513)
Q Consensus       230 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~  284 (513)
                      ..+..++..        .|++++|+..|++..+.... +...+                 ..+...|.+.|++++|+..|
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  171 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY  171 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            777788888        88999999999988875322 22222                 44566778888888888888


Q ss_pred             HHHHcCCCC-C-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 010320          285 QMMKAGPVM-P-DTNTYLLLLRGYAHS----------GNLPRMEKIYELVKHH  325 (513)
Q Consensus       285 ~~m~~~g~~-p-~~~t~~~ll~~~~~~----------g~~~~a~~~~~~~~~~  325 (513)
                      +++.+..-. + ....+..+..+|...          |++++|...|+.+.+.
T Consensus       172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            887763211 1 245666777777755          7778888888887775

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.97  E-value=4.4e-08  Score=89.63  Aligned_cols=162  Identities=9%  Similarity=-0.048  Sum_probs=103.0

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhc----cCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 010320          163 IKFAGRINNVDLAADLFAEAANK----HLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTL  232 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~l  232 (513)
                      ...|...|++++|.+.|++..+.    |-+  ...+|+.+...|.+.|++++|+..|++......-..+    ..+|+.+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44566778888888888776543    211  2467778888888888888888888776542100111    3466777


Q ss_pred             HHHHHhc-CChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH------HHHH
Q 010320          233 ISVFGRL-LLVDHMEAAFQEIKDSNLS-PN----VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT------NTYL  300 (513)
Q Consensus       233 i~~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~  300 (513)
                      ...|... |++++|+..|++..+.... .+    ..+|+.+...+.+.|++++|+..|++..+.......      ..|.
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  203 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            7777775 7777777777776642110 01    345667777777777777777777777663322111      1456


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q 010320          301 LLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       301 ~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      .+..++...|++++|...|++..+
T Consensus       204 ~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          204 KKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            666677777777777777777655

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.97  E-value=6.3e-08  Score=83.63  Aligned_cols=172  Identities=12%  Similarity=0.015  Sum_probs=126.3

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHhC
Q 010320          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA----------------LLGAYMYNGLSDKCQSLFRDLKKEA  220 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~  220 (513)
                      ..+-.....+.+.|++++|...|++..+..+.+...|..                +...|.+.|++++|+..|++..+. 
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-   83 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-   83 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence            334445556678899999999999988876556677777                889999999999999999999875 


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHcCCCCCCHHH
Q 010320          221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM--WGKVEEIYQMMKAGPVMPDTNT  298 (513)
Q Consensus       221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t  298 (513)
                       -+-+...|..+..++...|++++|+..|++..+... -+..+|..+...|...|+  .+.+...++....  ..|....
T Consensus        84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a  159 (208)
T 3urz_A           84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA  159 (208)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence             244678899999999999999999999999988654 267888888888776654  3455666655543  2233334


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHH
Q 010320          299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR  335 (513)
Q Consensus       299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  335 (513)
                      +.....++...|++++|...|++..+.  .|+.....
T Consensus       160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~  194 (208)
T 3urz_A          160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK  194 (208)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence            455566677788999999999998875  35544333

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.95  E-value=1.6e-08  Score=84.92  Aligned_cols=163  Identities=9%  Similarity=-0.068  Sum_probs=123.4

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV-F  236 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~-~  236 (513)
                      .+..+...+.+.|++++|...|++..+..+.+...|..+...+...|++++|+..|++....   .|+...+..+... +
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL   84 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence            45566677888999999999999988876668889999999999999999999999988754   3455443332222 2


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 010320          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRM  315 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a  315 (513)
                      ...+....|+..|++..+... -+...+..+...+...|++++|...|+++.+..-.+ +...+..+...+...|+.++|
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            232334457888888887543 257888888899999999999999999988754222 356788888999999999999


Q ss_pred             HHHHHHHHh
Q 010320          316 EKIYELVKH  324 (513)
Q Consensus       316 ~~~~~~~~~  324 (513)
                      ...|++...
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988876554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.95  E-value=2.6e-08  Score=102.47  Aligned_cols=189  Identities=12%  Similarity=-0.038  Sum_probs=151.5

Q ss_pred             cccCCHHHHHHHHHHHH--------hccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010320          167 GRINNVDLAADLFAEAA--------NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR  238 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~  238 (513)
                      ...|++++|++.|++..        +..+.+...|..+...+...|++++|++.|++..+.  -+-+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence            78899999999999998        554557889999999999999999999999999875  24567899999999999


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010320          239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI  318 (513)
Q Consensus       239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~  318 (513)
                      .|++++|++.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.. .-+...|..+..++.+.|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999886532 67888999999999999999 99999988743 22578899999999999999999999


Q ss_pred             HHHHHhccCCCcHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHhCC
Q 010320          319 YELVKHHVDGKEFPLIRAMICAYSKCSV-----TDRIKKIEALMRLIP  361 (513)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~  361 (513)
                      |++..+.. +.+...+..+..++...+.     .+...++.+.+....
T Consensus       557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          557 LDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            99888753 2345667777777766554     345556666666554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.93  E-value=2.1e-07  Score=83.79  Aligned_cols=144  Identities=15%  Similarity=0.012  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010320          175 AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       175 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  253 (513)
                      |+..|++....+.++..++..+..++...|++++|++++.+.... |- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344444444333223333334444555555555555555544321 11 0133444444555555555555555555554


Q ss_pred             HCCCCC-----CHHHHHHHHHHH--HHcc--CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320          254 DSNLSP-----NVFTYNYLIAGY--MTAW--MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       254 ~~g~~p-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      +.  .|     +..+...|..++  ...|  ++.+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            42  23     123333333331  1112  455555555555442  1332222333334455555555555554443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.93  E-value=6.6e-08  Score=88.15  Aligned_cols=167  Identities=10%  Similarity=-0.069  Sum_probs=126.3

Q ss_pred             CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320          153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL  232 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l  232 (513)
                      +.+...+..+...+.+.|++++|.+.|++..+..+.+...+..+...+.+.|++++|...|++....   .|+.......
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence            4456667777788888899999999999888877778888888888888999999999988888753   4665433332


Q ss_pred             H-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcC
Q 010320          233 I-SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGYAHSG  310 (513)
Q Consensus       233 i-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g  310 (513)
                      . ..+.+.++.+.|...|++..+... .+...+..+...+...|++++|+..|+++.+..-. .+...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            2 336667778888888888877643 36778888888888888888888888888774311 12567888888888888


Q ss_pred             ChHHHHHHHHHHH
Q 010320          311 NLPRMEKIYELVK  323 (513)
Q Consensus       311 ~~~~a~~~~~~~~  323 (513)
                      +.++|...+++..
T Consensus       270 ~~~~a~~~~r~al  282 (287)
T 3qou_A          270 TGDALASXYRRQL  282 (287)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            8888887776644

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.90  E-value=2.8e-07  Score=83.06  Aligned_cols=195  Identities=9%  Similarity=0.007  Sum_probs=142.3

Q ss_pred             CchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC--CCHhHHHH
Q 010320          118 SNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL--KTIGTYNA  195 (513)
Q Consensus       118 p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~  195 (513)
                      |....+..+...+.+.   |...++.+...+    +++..++..+..++...|++++|++++.+....+.  .+...+..
T Consensus        69 ~~~~a~~~la~~~~~~---a~~~l~~l~~~~----~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l  141 (310)
T 3mv2_B           69 KLGKVLDLYVQFLDTK---NIEELENLLKDK----QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLL  141 (310)
T ss_dssp             TTHHHHHHHHHHHTTT---CCHHHHHTTTTS----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhccc---HHHHHHHHHhcC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHH
Confidence            3333444444444322   556665443321    44666667888999999999999999999877775  47889999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHH--Hh--cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010320          196 LLGAYMYNGLSDKCQSLFRDLKKEANISP-----SIVTYNTLISVF--GR--LLLVDHMEAAFQEIKDSNLSPNVFTYNY  266 (513)
Q Consensus       196 li~~~~~~g~~~~A~~~~~~m~~~~g~~p-----~~~~~~~li~~~--~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~  266 (513)
                      ++..+.+.|+.+.|.+.+++|.+.   .|     +..+...|..++  ..  .++.++|..+|+++.+.  .|+..+-..
T Consensus       142 ~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~l  216 (310)
T 3mv2_B          142 AIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLG  216 (310)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHH
Confidence            999999999999999999999864   57     355556666553  22  34899999999999865  356445555


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHcC-----CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010320          267 LIAGYMTAWMWGKVEEIYQMMKAG-----PV---MP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       267 li~~~~~~g~~~~a~~~~~~m~~~-----g~---~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                      ++.++.+.|++++|.+.++.+.+.     +-   .| |..+...+|......|+  +|.+++.++.+..
T Consensus       217 Lln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          217 LLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            666899999999999999987652     11   24 46677677766777787  7889999998863

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.88  E-value=2.4e-06  Score=77.68  Aligned_cols=135  Identities=10%  Similarity=-0.016  Sum_probs=61.7

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC--CHHHHHHHHHHHHhccCCCHhHHHHHHHHH----HHc---
Q 010320          133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN--NVDLAADLFAEAANKHLKTIGTYNALLGAY----MYN---  203 (513)
Q Consensus       133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~li~~~----~~~---  203 (513)
                      ..+.|+..++.+....    |-+..+|+.--.++...|  ++++++++++.+...++++..+|+.--..+    ...   
T Consensus        48 ~s~~aL~~t~~~L~~n----P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~  123 (306)
T 3dra_A           48 YSERALHITELGINEL----ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND  123 (306)
T ss_dssp             CSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHHHHHC----cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence            3344555555444431    224444444444444444  555555555555554444444444443333    333   


Q ss_pred             CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010320          204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD--HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       204 g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      +++++++++++.+.+.  -+-|-.+|+.-.-.+.+.|.++  ++++.++++.+..+. |...|+.-...+.+.
T Consensus       124 ~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l  193 (306)
T 3dra_A          124 FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK  193 (306)
T ss_dssp             CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence            4455555555555443  1334444444444444444444  455555555444332 444444444433333

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.87  E-value=2.9e-06  Score=77.12  Aligned_cols=152  Identities=12%  Similarity=-0.008  Sum_probs=73.1

Q ss_pred             CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------
Q 010320          170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSD--KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL------  241 (513)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~------  241 (513)
                      +++++++++++.+.+..++|-.+|+.-.-.+.+.|.++  ++++.++++.+.  -.-|-..|+.....+.+.+.      
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence            45555555555555554445555555555555555554  555555555543  13344455544444444443      


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010320          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKAGP--VMPDTNTYLLLLRGYAHSGNLPRMEKI  318 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~  318 (513)
                      ++++++.++++....+. |...|+.+-..+.+.|+..+ +..+.+++.+.+  -..+...+..+...+.+.|+.++|.++
T Consensus       202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            45555555555544332 45555555555555444222 333444433321  012444555555555555555555555


Q ss_pred             HHHHHh
Q 010320          319 YELVKH  324 (513)
Q Consensus       319 ~~~~~~  324 (513)
                      ++.+.+
T Consensus       281 ~~~l~~  286 (306)
T 3dra_A          281 YDLLKS  286 (306)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.87  E-value=2.7e-08  Score=80.93  Aligned_cols=145  Identities=7%  Similarity=-0.105  Sum_probs=98.3

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~  241 (513)
                      |...+...|++++|++.++......+.+...+..+...|.+.|++++|++.|++..+.  -+-+..+|..+..++.+.|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence            3445566778888888888776654335666777888888888888888888888764  23456778888888888888


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010320          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPD-TNTYLLLLRGYAHSGN  311 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p~-~~t~~~ll~~~~~~g~  311 (513)
                      +++|+..|++..+.... +..+|..+...|.+.|++++|.+. +++..+  +.|+ ..+|......+...|+
T Consensus        81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence            88888888887775432 567777777778888877665554 466655  2343 5566655555555553

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.86  E-value=1.7e-07  Score=81.97  Aligned_cols=191  Identities=12%  Similarity=0.005  Sum_probs=111.8

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYN  230 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~  230 (513)
                      +...+-.+...+.+.|++++|...|+++.+..+.+   ...+..+..+|.+.|++++|+..|+++.+...-.+.. ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            34455566677788899999999999888765432   3577778888888999999999999888652111221 2344


Q ss_pred             HHHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010320          231 TLISVFGR------------------LLLVDHMEAAFQEIKDSNLSPNV-FTYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       231 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      .+..++.+                  .|++++|...|+++.+..  |+. ..+......    +      .+...+    
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----~------~~~~~~----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----V------FLKDRL----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----H------HHHHHH----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----H------HHHHHH----
Confidence            44444443                  456666666666666542  221 111111000    0      000000    


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 010320          292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE--FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY  365 (513)
Q Consensus       292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  365 (513)
                          ......+...+.+.|++++|...|+.+.+......  ...+..+..+|.+.|+.+.|.+.++.+....+.+.
T Consensus       147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence                00112445566777777777777777776532111  23566677777777777777777776666554443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.86  E-value=3.2e-07  Score=82.29  Aligned_cols=189  Identities=10%  Similarity=0.001  Sum_probs=127.8

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-CCC-HHH
Q 010320          224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN---VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPD-TNT  298 (513)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~t  298 (513)
                      .+...+..+...+.+.|++++|+..|+++.+.... +   ...+..+..+|.+.|++++|+..|++..+..- .|. ...
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            45677778888888999999999999999876432 3   57788888899999999999999999887421 122 556


Q ss_pred             HHHHHHHHHh--------cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010320          299 YLLLLRGYAH--------SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN  370 (513)
Q Consensus       299 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  370 (513)
                      +..+..++..        .|++++|...|+++.+... .+.....++.....          ....+..       .+ +
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~~~----------~~~~~~~-------~~-~  152 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKIRE----------LRAKLAR-------KQ-Y  152 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHH----------HHHHHHH-------HH-H
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHHHH----------HHHHHHH-------HH-H
Confidence            7777888888        8999999999998887632 22222222211110          0000000       01 1


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhcC
Q 010320          371 VLLIRVYAKEDCLEEMEKSINDAFEHKTS-VTTVRIMRCIVSSYFRC----------NAVDKLANFVKRAESAG  433 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~  433 (513)
                       .+...|...|++++|+..|+++++.... +.....+..+..+|...          |++++|...++++.+..
T Consensus       153 -~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          153 -EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence             4677788888888888888888775432 22344566677777765          77788888887776543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.83  E-value=1.1e-07  Score=97.76  Aligned_cols=175  Identities=12%  Similarity=-0.032  Sum_probs=144.6

Q ss_pred             cCChHHHHHHHHHHHHc----CCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh
Q 010320          131 GSRPRLALEVLNWRRRQ----AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS  206 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~----~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~  206 (513)
                      .++++.|++.++...+.    .....+.+...+..+..+|.+.|++++|.+.|++..+..+.+...|..+..+|...|++
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  483 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY  483 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred             ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence            56889999999887610    00113457788999999999999999999999999998877999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010320          207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM  286 (513)
Q Consensus       207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (513)
                      ++|++.|++..+.  -+-+...|..+..++.+.|++++ ++.|++..+... -+...|..+..++.+.|++++|++.|++
T Consensus       484 ~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~  559 (681)
T 2pzi_A          484 DSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDE  559 (681)
T ss_dssp             HHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999875  23467889999999999999999 999999998654 3678999999999999999999999999


Q ss_pred             HHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010320          287 MKAGPVMPD-TNTYLLLLRGYAHSGN  311 (513)
Q Consensus       287 m~~~g~~p~-~~t~~~ll~~~~~~g~  311 (513)
                      ..+  +.|+ ...+..+..++...++
T Consensus       560 al~--l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          560 VPP--TSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             SCT--TSTTHHHHHHHHHHHTC----
T ss_pred             hcc--cCcccHHHHHHHHHHHHccCC
Confidence            887  4466 6677777777766555

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.83  E-value=4.1e-07  Score=83.83  Aligned_cols=205  Identities=8%  Similarity=-0.013  Sum_probs=111.4

Q ss_pred             cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHH
Q 010320          203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE  282 (513)
Q Consensus       203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  282 (513)
                      .|++++|.+++++..+..  +..      +   +...++++.|...|++.               ...|...|++++|.+
T Consensus         4 ~~~~~eA~~~~~~a~k~~--~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL--KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc--ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            456677777777666531  111      0   11146667776666654               345666777777777


Q ss_pred             HHHHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320          283 IYQMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM  357 (513)
Q Consensus       283 ~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  357 (513)
                      .|.+..+.    |-.. -..+|+.+...|...|++++|...|++..+.               +...|+...+..+    
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~a~~----  118 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM---------------YVENGTPDTAAMA----  118 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH---------------HHTTTCHHHHHHH----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------HHHcCCHHHHHHH----
Confidence            77765441    1111 1456777778888888888888888776542               1122222111111    


Q ss_pred             HhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Q 010320          358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA-  432 (513)
Q Consensus       358 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-  432 (513)
                                  +..+...|.. |++++|++.|++.+...    .......+++.+...|...|++++|++.+++..+. 
T Consensus       119 ------------~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  185 (307)
T 2ifu_A          119 ------------LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY  185 (307)
T ss_dssp             ------------HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                        1124444444 66666666655544311    11111345666666677777777777777765432 


Q ss_pred             ---CCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320          433 ---GWRLC-RSLYHSKMVMYASQRRVEEMESVLKEME  465 (513)
Q Consensus       433 ---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  465 (513)
                         +..+. ...+..+...+...|++++|...|++..
T Consensus       186 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence               11111 1244455555666677777777777666

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.80  E-value=1.9e-07  Score=94.14  Aligned_cols=152  Identities=9%  Similarity=-0.126  Sum_probs=67.8

Q ss_pred             CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010320          170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF  249 (513)
Q Consensus       170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  249 (513)
                      |++++|.+.|++..+..+.+...|..+...|...|++++|++.|++..+.  .+-+...|..+..++...|++++|.+.|
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            44555555555554443334555555555555555555555555555532  1223445555555555555555555555


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 010320          250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS---GNLPRMEKIYELVKHH  325 (513)
Q Consensus       250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~~~~~  325 (513)
                      ++..+... -+...|..+..+|.+.|++++|.+.|++..+.. .-+...+..+...+...   |+.++|.+.+++..+.
T Consensus        81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            55554322 134455555555555555555555555554421 11344555555555555   5555555555555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.76  E-value=1.7e-05  Score=72.89  Aligned_cols=168  Identities=9%  Similarity=-0.079  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChhHHHHHH
Q 010320          173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL-L-LVDHMEAAF  249 (513)
Q Consensus       173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~~~~  249 (513)
                      ++|+++++.+...++.+..+|+.--..+...| .+++++++++.+...  .+-+..+|+.-...+.+. + +++++++++
T Consensus        71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            34455555554444444444444444444444 255555555555432  223334444444444333 3 445555555


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHccCHH--------HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-------hHH
Q 010320          250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWG--------KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN-------LPR  314 (513)
Q Consensus       250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-------~~~  314 (513)
                      +++.+... .|..+|+.-...+.+.|.++        ++++.++++.+.... |...|+.....+.+.++       +++
T Consensus       149 ~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e  226 (349)
T 3q7a_A          149 HGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD  226 (349)
T ss_dssp             HHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence            55554332 24445544444444444443        555555555554322 45555555555544443       456


Q ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010320          315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCS  345 (513)
Q Consensus       315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  345 (513)
                      +++.+++.... .+.|...|+-+-..+.+.|
T Consensus       227 ELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          227 ELIYILKSIHL-IPHNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence            66666666654 2346666665555555544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.75  E-value=8e-07  Score=81.85  Aligned_cols=165  Identities=8%  Similarity=-0.004  Sum_probs=107.2

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccC--C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCC-CHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHL--K----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISP-SIV  227 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p-~~~  227 (513)
                      .|......|...|++++|.+.|.+..+...  .    -..+|+.+...|...|++++|+..|++....   .|-.. -..
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344455667777888888888877654321  1    1457777788888888888888888776532   11111 134


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCCC-HH
Q 010320          228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP-----NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMPD-TN  297 (513)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~  297 (513)
                      +++.+...|.. |++++|+..|++..+.....     ...+++.+...|.+.|++++|++.|++....    +..++ ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            66777777777 88888888887766421100     1356777777888888888888888776641    21111 23


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320          298 TYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       298 t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      ++..+..++...|++++|...|++..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            55666666777788888888887776

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.75  E-value=7.2e-07  Score=76.90  Aligned_cols=163  Identities=10%  Similarity=0.016  Sum_probs=121.7

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHH----------------HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHH
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTK----------------GIKFAGRINNVDLAADLFAEAANKHLKTIGTYN  194 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~----------------ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  194 (513)
                      .++++.|...|+...+..    |-+...|..                +..+|.+.|++++|...|++..+..+.+...|.
T Consensus        17 ~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   92 (208)
T 3urz_A           17 AGQNGQAVSYFRQTIALN----IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLE   92 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHC----HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC----CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            467788888887776532    224455555                888999999999999999999998877999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010320          195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL--VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM  272 (513)
Q Consensus       195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  272 (513)
                      .+...+...|++++|+..|++..+.  -+-+..+|..+..++...|+  .+.+...++....  ..|....+..+..++.
T Consensus        93 ~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~  168 (208)
T 3urz_A           93 ACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKL  168 (208)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHH
Confidence            9999999999999999999999975  24467888888888866654  4455666666542  2233334444566677


Q ss_pred             HccCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010320          273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL  303 (513)
Q Consensus       273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll  303 (513)
                      ..|++++|+..|++..+  +.|+......+.
T Consensus       169 ~~~~~~~A~~~~~~al~--l~P~~~~~~~l~  197 (208)
T 3urz_A          169 FTTRYEKARNSLQKVIL--RFPSTEAQKTLD  197 (208)
T ss_dssp             HHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence            78999999999999988  568865544443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.75  E-value=1.4e-05  Score=78.50  Aligned_cols=361  Identities=9%  Similarity=0.002  Sum_probs=223.5

Q ss_pred             chhHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC-HHHHHHHHHHHHhc-c--CCCHhHH
Q 010320          119 NGYAFVELMKQLG-SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN-VDLAADLFAEAANK-H--LKTIGTY  193 (513)
Q Consensus       119 ~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~-~--~~~~~~~  193 (513)
                      -..+|...+..+- +..+.+..+|+....     ..|+...|...+....+.+. .+....+|+..... |  +.+...|
T Consensus        14 aR~vyer~l~~~P~~~~e~~~~iferal~-----~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW   88 (493)
T 2uy1_A           14 PSAIMEHARRLYMSKDYRSLESLFGRCLK-----KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY   88 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHST-----TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence            4567888888885 788889999987654     34699999999888877763 46678888887764 3  2377888


Q ss_pred             HHHHHHHH----HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChhHHHHHHHHHHHCC
Q 010320          194 NALLGAYM----YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR-------------LLLVDHMEAAFQEIKDSN  256 (513)
Q Consensus       194 ~~li~~~~----~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~g  256 (513)
                      ...+..+.    ..++.+.+.++|+..... ...--...|......-..             .+.+..|..+++++...-
T Consensus        89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~  167 (493)
T 2uy1_A           89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI  167 (493)
T ss_dssp             HHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            88887654    346788999999999852 111112233322221111             112333444555444210


Q ss_pred             CCCCHHHHHHHHHHHHHcc--C-----HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010320          257 LSPNVFTYNYLIAGYMTAW--M-----WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK  329 (513)
Q Consensus       257 ~~p~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  329 (513)
                      ...+...|...+.--...+  -     .+.+..+|+++.... .-+...|...+.-+.+.|+++.|..++++....  +.
T Consensus       168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~  244 (493)
T 2uy1_A          168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SD  244 (493)
T ss_dssp             HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC
T ss_pred             hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC
Confidence            0013445655554422211  1     345678899887743 345778888888889999999999999999988  44


Q ss_pred             cHHHHHHHHHHHHhcCChhHH-HHHHHHHHhCC-------CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010320          330 EFPLIRAMICAYSKCSVTDRI-KKIEALMRLIP-------EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT  401 (513)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  401 (513)
                      +...+..    |......+.. ..+.+.+....       ........+...+....+.+..+.|..+|+.. ....  .
T Consensus       245 ~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~  317 (493)
T 2uy1_A          245 GMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--V  317 (493)
T ss_dssp             SSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--C
T ss_pred             cHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--C
Confidence            4444332    2222111111 11111110000       00000111223555555678899999999988 3222  2


Q ss_pred             hHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010320          402 TVRIMRCIVSSYFR-CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY  480 (513)
Q Consensus       402 ~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li  480 (513)
                      ...+|......-.. .++.+.|..+|+...+.... +...+...++...+.|+.+.|..+|+...     .....|...+
T Consensus       318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~  391 (493)
T 2uy1_A          318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMI  391 (493)
T ss_dssp             CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHH
Confidence            34445432222222 33699999999988764322 34556777888888999999999999973     2567888888


Q ss_pred             HHHHhcCCHhHHHHHHHHHHH
Q 010320          481 YAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       481 ~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      .--...|+.+.+.++++++.+
T Consensus       392 ~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          392 EYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            888889999999998888764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.75  E-value=1.5e-06  Score=76.00  Aligned_cols=190  Identities=11%  Similarity=-0.028  Sum_probs=123.2

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CH-HHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP-NV-FTYN  265 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~-~~~~  265 (513)
                      +...+..+...+.+.|++++|+..|+++.+...-.|. ...+..+..++.+.|++++|+..|+++.+....- .. ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3456667778889999999999999999875211121 3578888999999999999999999998754321 11 2444


Q ss_pred             HHHHHHHH------------------ccCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010320          266 YLIAGYMT------------------AWMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       266 ~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                      .+..++.+                  .|++++|+..|+++.+.  .|+. ..+......          ..+...+.   
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~---  147 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA---  147 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence            44444443                  45677777777777763  2332 111111100          00011110   


Q ss_pred             CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010320          327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY-RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT  398 (513)
Q Consensus       327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  398 (513)
                           .....+...|.+.|+++.|...++.+.+..+.+. .+.....+..+|.+.|+.++|.+.++.+...+.
T Consensus       148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence                 1123456778899999999888777666544432 222233689999999999999999998887543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.74  E-value=6e-06  Score=75.34  Aligned_cols=199  Identities=7%  Similarity=-0.098  Sum_probs=124.9

Q ss_pred             ccCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHH---HHHHHHhcccCCHHHHHHHHHHHHhccCCCH--
Q 010320          116 RHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEY---TKGIKFAGRINNVDLAADLFAEAANKHLKTI--  190 (513)
Q Consensus       116 ~~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--  190 (513)
                      ..|+..++..+...+.-.++.   ++.    ..   ...+...+   ...+..+...|++++|.+++++..+....+.  
T Consensus        42 ~~~~~~~l~~i~~~l~~~~~~---~~~----~~---~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~  111 (293)
T 3u3w_A           42 VYPSMDILQGIAAKLQIPIIH---FYE----VL---IYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF  111 (293)
T ss_dssp             CCCCHHHHHHHHHHHTCCTHH---HHH----TT---TSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH
T ss_pred             CCCCHHHHHHHHHHhCcCHHH---HhC----CC---CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH
Confidence            367888888888877766542   221    11   11123333   2336667788888888888888776433221  


Q ss_pred             ----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH----C-CC
Q 010320          191 ----GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKD----S-NL  257 (513)
Q Consensus       191 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~  257 (513)
                          ..+..+...+...|++++|+..|++......-.++    ..+|+.+..+|...|++++|+..|++..+    . +.
T Consensus       112 ~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  191 (293)
T 3u3w_A          112 QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN  191 (293)
T ss_dssp             HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence                13334566666677888888888888763111222    23677888888888888888888887763    1 11


Q ss_pred             CCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHc----CCCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 010320          258 SPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKA----GPVMPD-TNTYLLLLRGYAHSGN-LPRMEKIYELVKH  324 (513)
Q Consensus       258 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~  324 (513)
                      .+. ..+|..+...|.+.|++++|++.+++..+    .+..+. ..+|..+..++.+.|+ +++|.+.+++...
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            111 23667777778888888888887777653    222222 5677777777777774 5777777766543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.74  E-value=1.2e-06  Score=75.68  Aligned_cols=176  Identities=10%  Similarity=-0.119  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC----ChHHHHHH
Q 010320          137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG----LSDKCQSL  212 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~  212 (513)
                      |+..|+...+.+      +...+..+-..|...+++++|.+.|++..+.|  +...+..|...|.. +    +.++|++.
T Consensus         5 A~~~~~~aa~~g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            5 PGSQYQQQAEAG------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             TTHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             HHHHHHHHHHCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            455566555543      78888888888888999999999999988764  66778888888877 6    89999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----ccCHHHHHHH
Q 010320          213 FRDLKKEANISPSIVTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMT----AWMWGKVEEI  283 (513)
Q Consensus       213 ~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~  283 (513)
                      |++..+.    -+...+..|...|..    .+++++|+..|++..+.|.. .+...+..|-..|..    .+++++|+++
T Consensus        76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            9998763    377788888888877    78999999999998876531 026788888888888    7789999999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhccC
Q 010320          284 YQMMKAGPVMPDTNTYLLLLRGYAHS-G-----NLPRMEKIYELVKHHVD  327 (513)
Q Consensus       284 ~~~m~~~g~~p~~~t~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~~  327 (513)
                      |++..+.  ..+...+..|...|... |     ++++|...|+...+.|.
T Consensus       152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            9998875  23455677777777653 3     89999999998888764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.72  E-value=1.3e-06  Score=79.77  Aligned_cols=200  Identities=9%  Similarity=-0.052  Sum_probs=116.4

Q ss_pred             cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH------
Q 010320          117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI------  190 (513)
Q Consensus       117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~------  190 (513)
                      .|+..++..+...++-.++.-......-.       +.....+...+..+...|++++|.+.+++..+......      
T Consensus        43 ~~~~~~l~~l~~~l~~~~~~l~~~~~~~~-------~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~  115 (293)
T 2qfc_A           43 YPSMDILQGIAAKLQIPIIHFYEVLIYSD-------IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFL  115 (293)
T ss_dssp             CCCHHHHHHHTTTSCCCTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCcCHHHHhccccccc-------hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHH
Confidence            46665555555555544443222221110       11233445566677778888888888777665433211      


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC-----
Q 010320          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEAN--ISPS--IVTYNTLISVFGRLLLVDHMEAAFQEIKDS-NLSPN-----  260 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g--~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----  260 (513)
                      ..+..+...+...|++++|++.|++......  ..+.  ..+|+.+...|...|++++|+..|++..+. ...|+     
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~  195 (293)
T 2qfc_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence            2233455556667788888888777764210  1111  346777777777788888888777776621 00112     


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 010320          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRM-EKIYELVK  323 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a-~~~~~~~~  323 (513)
                      ..+|+.+...|.+.|++++|++.+++..+.    +... -..+|..+...|.+.|++++| ...+++..
T Consensus       196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            246777777777777888777777775531    1111 156677777777777777777 66566544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.70  E-value=5.9e-07  Score=90.59  Aligned_cols=153  Identities=8%  Similarity=-0.094  Sum_probs=117.3

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010320          132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS  211 (513)
Q Consensus       132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  211 (513)
                      ++.+.|.+.++...+.    .+-+...|..+...+.+.|++++|.+.|++..+..+.+...|..+...|...|++++|++
T Consensus         3 g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4566777777766543    234678889999999999999999999999998877788899999999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHH
Q 010320          212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA---WMWGKVEEIYQMMK  288 (513)
Q Consensus       212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~  288 (513)
                      .|++..+.  .+.+...|..+..++.+.|++++|.+.|++..+... -+...+..+...+...   |++++|.+.+++..
T Consensus        79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            99998875  244678899999999999999999999999987643 3678888899999999   99999999999987


Q ss_pred             cCC
Q 010320          289 AGP  291 (513)
Q Consensus       289 ~~g  291 (513)
                      +.+
T Consensus       156 ~~~  158 (568)
T 2vsy_A          156 AQG  158 (568)
T ss_dssp             HHT
T ss_pred             hcC
Confidence            743

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.70  E-value=6.1e-08  Score=78.79  Aligned_cols=113  Identities=10%  Similarity=0.039  Sum_probs=83.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  451 (513)
                      .+...|.+.|++++|++.|++.++.  .|.+...|..+...|...|++++|...|++..+.... +...|..+...|.+.
T Consensus        36 ~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~  112 (150)
T 4ga2_A           36 YFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKN  112 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            4777888888888888888888774  3556677888888888888888888888888765532 566777788888888


Q ss_pred             CCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320          452 RRVEEMESV-LKEMENYKIDCSKKTFWIMYYAYATCGQ  488 (513)
Q Consensus       452 g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g~  488 (513)
                      |++++|.+. +++..+.. +-+..+|......+...|+
T Consensus       113 ~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          113 DVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             CSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred             CChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence            888776654 46666654 4456677776666666664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.69  E-value=1.2e-06  Score=72.17  Aligned_cols=127  Identities=7%  Similarity=-0.108  Sum_probs=70.2

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+..+...+...|++++|...|++..+..+.+..+|..+...+...|++++|++.|++..+.  .+.+...|..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence            34445555566666666666666666554445666666666666666666666666666543  1334555666666666


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHccCHHHHHHHHHHH
Q 010320          238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI--AGYMTAWMWGKVEEIYQMM  287 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m  287 (513)
                      ..|++++|...|++..+... .+...+..+.  ..+.+.|++++|++.++..
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            66666666666666655432 1333332222  2244555555555555443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.68  E-value=1.2e-06  Score=79.73  Aligned_cols=161  Identities=9%  Similarity=-0.136  Sum_probs=128.0

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +...+..+...+...|++++|...|++..+.  -+-+...+..+...+.+.|++++|...+++.....  |+........
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~  191 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA  191 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence            6777888889999999999999999999875  24467889999999999999999999999987653  5554333333


Q ss_pred             -HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHhcCC
Q 010320          269 -AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK-EFPLIRAMICAYSKCSV  346 (513)
Q Consensus       269 -~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~  346 (513)
                       ..+.+.++.++|+..|++..... ..+...+..+...+...|++++|...|.++.+..... +...+..+...|...|+
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence             34667888899999999988743 2358889999999999999999999999998864322 26677888888888887


Q ss_pred             hhHHHHHH
Q 010320          347 TDRIKKIE  354 (513)
Q Consensus       347 ~~~a~~~~  354 (513)
                      .+.+...+
T Consensus       271 ~~~a~~~~  278 (287)
T 3qou_A          271 GDALASXY  278 (287)
T ss_dssp             TCHHHHHH
T ss_pred             CCcHHHHH
Confidence            77665544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.68  E-value=6.9e-06  Score=74.96  Aligned_cols=128  Identities=7%  Similarity=-0.037  Sum_probs=95.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHHhcCcHHHHHHHHHHHHh----c-CCccc-HhhHH
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTT----VRIMRCIVSSYFRCNAVDKLANFVKRAES----A-GWRLC-RSLYH  442 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~  442 (513)
                      +...+...+++++|+..|++.+.......+    ..+++.+...|...|++++|.++++++.+    . +..+. ..+|.
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence            566667778899999999888873222222    34688899999999999999999998763    1 22222 34678


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCC-HhHHHHHHHHHH
Q 010320          443 SKMVMYASQRRVEEMESVLKEMENY----KIDCS-KKTFWIMYYAYATCGQ-RRKVNQVLGLMC  500 (513)
Q Consensus       443 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~  500 (513)
                      .+...|.+.|++++|...+++..+.    +..+. ..+|..+..+|.+.|+ +++|.+.+++..
T Consensus       201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            8889999999999999999877642    22222 6788899999999995 699998888764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.65  E-value=5.4e-07  Score=75.35  Aligned_cols=159  Identities=8%  Similarity=-0.056  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010320          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG  270 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (513)
                      ..+..+...+...|++++|+..|++..+.  -+-+...+..+...+.+.|++++|+..|++..+..  |+...+..+...
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~   82 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL   82 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence            45566777888999999999999987754  24467788999999999999999999999987653  354443332222


Q ss_pred             -HHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHhcCCh
Q 010320          271 -YMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK-EFPLIRAMICAYSKCSVT  347 (513)
Q Consensus       271 -~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~  347 (513)
                       +.+.++..+|+..|++..+.  .| +...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred             HHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence             22333445578888888763  35 47888889999999999999999999988865432 355677788888888887


Q ss_pred             hHHHHHHH
Q 010320          348 DRIKKIEA  355 (513)
Q Consensus       348 ~~a~~~~~  355 (513)
                      +++...++
T Consensus       161 ~~A~~~y~  168 (176)
T 2r5s_A          161 NAIASKYR  168 (176)
T ss_dssp             CHHHHHHH
T ss_pred             CcHHHHHH
Confidence            77665544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.64  E-value=1.9e-06  Score=66.73  Aligned_cols=98  Identities=12%  Similarity=0.065  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV  235 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~  235 (513)
                      ...+..+...+.+.|++++|.++|+++....+.+..++..+...+.+.|++++|+.+|+++.+.  .+.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence            3445555555666666666666666665554445555666666666666666666666665543  13345555555555


Q ss_pred             HHhcCChhHHHHHHHHHHHC
Q 010320          236 FGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~  255 (513)
                      +...|++++|...|+++.+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence            66666666666666555543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.61  E-value=4.5e-06  Score=71.99  Aligned_cols=129  Identities=9%  Similarity=-0.056  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010320          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY  271 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  271 (513)
                      .+..+...+...|++++|++.|++..     .|+...|..+...+.+.|++++|+..|++..+... .+...|..+..+|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~   81 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence            34445555666677777776666542     34666666666667777777777777766665432 2556666666677


Q ss_pred             HHccCHHHHHHHHHHHHcCC--------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010320          272 MTAWMWGKVEEIYQMMKAGP--------------VMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       272 ~~~g~~~~a~~~~~~m~~~g--------------~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                      ...|++++|++.|++..+..              ..| ....+..+..++...|++++|.+.|+...+..
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            77777777777776666532              111 13566777777777777777777777777653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.60  E-value=4.2e-07  Score=76.08  Aligned_cols=122  Identities=9%  Similarity=0.073  Sum_probs=89.8

Q ss_pred             hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--
Q 010320          166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV-FGRLLLV--  242 (513)
Q Consensus       166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~--  242 (513)
                      +...|++++|.+.++...+..+.+...|..+...|...|++++|+..|++..+.  .+.+...+..+..+ +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence            356678888888888877776667788888888888888888888888888764  13466677777777 6778887  


Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320          243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      ++|...|++..+... -+...|..+...|...|++++|...|++..+.
T Consensus        98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            888888888877543 25677777888888888888888888887763

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.59  E-value=5.7e-07  Score=76.96  Aligned_cols=158  Identities=11%  Similarity=-0.032  Sum_probs=105.8

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCC-CHHHHHHHHHHHHhcCCh
Q 010320          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISP-SIVTYNTLISVFGRLLLV  242 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~  242 (513)
                      ...|++++|.++++.+.........++..+...+...|++++|++.|++....   .|..+ ...+++.+...+...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45788888888655554322125678888888888889998888888877652   11112 235677788888888888


Q ss_pred             hHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCC-CCHHHHHHHHHHHHhcCC
Q 010320          243 DHMEAAFQEIKDS----NLSP--NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVM-PDTNTYLLLLRGYAHSGN  311 (513)
Q Consensus       243 ~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t~~~ll~~~~~~g~  311 (513)
                      ++|...+++..+.    +-.+  ...++..+...+...|++++|...+++....    +-. .-..++..+...+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            8888888876642    2111  2345777778888888888888888876531    211 113445777788888888


Q ss_pred             hHHHHHHHHHHHh
Q 010320          312 LPRMEKIYELVKH  324 (513)
Q Consensus       312 ~~~a~~~~~~~~~  324 (513)
                      +++|.+.+++..+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888877654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.58  E-value=2.4e-06  Score=66.80  Aligned_cols=117  Identities=10%  Similarity=-0.036  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      ..+..+...+...|++++|.+.|++.....+.+...|..+...+...|++++|++.+++....  .+.+...+..+...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence            344444455555555555555555555444334555555555555555555555555555542  122344455555555


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010320          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                      .+.|++++|...|++..+... .+...+..+..++.+.|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence            555555555555555544322 134444444444444443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.57  E-value=2.8e-06  Score=66.40  Aligned_cols=96  Identities=9%  Similarity=-0.063  Sum_probs=56.2

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+......|.+.|++++|++.|++..+..+.+...|..+..+|.+.|++++|++.|++..+.  -+.+...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHH
Confidence            34445555566666666666666666555555666666666666666666666666665543  1334455666666666


Q ss_pred             hcCChhHHHHHHHHHHHC
Q 010320          238 RLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~  255 (513)
                      ..|++++|++.|++..+.
T Consensus        93 ~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH
Confidence            666666666666665553

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.56  E-value=3.4e-05  Score=75.74  Aligned_cols=328  Identities=7%  Similarity=-0.073  Sum_probs=199.5

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL-SDKCQSLFRDLKKEANISP-SIVTYNTLI  233 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~g~~p-~~~~~~~li  233 (513)
                      ..+|...+..+-. |+++.+..+|++.... .|++..|..-+....+.+. .+....+|+......|..| +...|...+
T Consensus        15 R~vyer~l~~~P~-~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi   92 (493)
T 2uy1_A           15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI   92 (493)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence            3444455555433 8999999999998884 4688999999988877763 4678889998887656433 667888877


Q ss_pred             HHHH----hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHcCCCCCCH
Q 010320          234 SVFG----RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-------------AWMWGKVEEIYQMMKAGPVMPDT  296 (513)
Q Consensus       234 ~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~~g~~p~~  296 (513)
                      ..+.    ..++++.+..+|++.+.....--...|......-..             .+.+..|..+++++...--..+.
T Consensus        93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~  172 (493)
T 2uy1_A           93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV  172 (493)
T ss_dssp             HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred             HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence            7654    346788999999999974222112333333221111             12233445555554431000133


Q ss_pred             HHHHHHHHHHHhcC--C-----hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 010320          297 NTYLLLLRGYAHSG--N-----LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL  369 (513)
Q Consensus       297 ~t~~~ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  369 (513)
                      ..|...+.--...+  -     .+.+..+|+++... .+.+...|...+.-+.+.|+.+.|..+++..... +.+..-|.
T Consensus       173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~  250 (493)
T 2uy1_A          173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL  250 (493)
T ss_dssp             HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH
T ss_pred             HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH
Confidence            45555444432221  1     34567789888875 3456788888888888999999998887766666 43332221


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010320          370 NVLLIRVYAKEDCLEEMEKSINDAFEHK-----------TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR  438 (513)
Q Consensus       370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~  438 (513)
                            .|....+.++.   ++.+...-           .......+|...+....+.++.+.|..+|+++ ... ..+.
T Consensus       251 ------~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~  319 (493)
T 2uy1_A          251 ------YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP  319 (493)
T ss_dssp             ------HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred             ------HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence                  22222111221   22222110           01112345777777777788999999999998 321 1233


Q ss_pred             hhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320          439 SLYHSKMVMYAS-QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       439 ~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      ..|......-.. .++.+.|..+|+...+.- +-+...|...++...+.|+.+.|..+|++.
T Consensus       320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            444322222222 336999999999988753 334556777888888999999999998875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.54  E-value=3.7e-06  Score=72.61  Aligned_cols=181  Identities=13%  Similarity=0.018  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 010320          244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG----NLPRMEKIY  319 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~  319 (513)
                      +|.+.|++..+.|   +...+..+-..|...+++++|++.|++..+.|   +...+..|...|.. +    ++++|.+.|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            3555566665542   55566666666666666666666666666544   44555555555555 4    566666666


Q ss_pred             HHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010320          320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS  399 (513)
Q Consensus       320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  399 (513)
                      ++..+.|   +...+..|...|..                                +....+++++|.++|++..+.+..
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~--------------------------------g~g~~~d~~~A~~~~~~A~~~~~~  121 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVN--------------------------------RQAGATDVAHAITLLQDAARDSES  121 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTC--------------------------------GGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred             HHHHHCC---CHHHHHHHHHHHHc--------------------------------CCCCccCHHHHHHHHHHHHHcCCC
Confidence            6654432   22222222222221                                000134556666666655554331


Q ss_pred             CchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 010320          400 VTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ-R-----RVEEMESVLKEMENYK  468 (513)
Q Consensus       400 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~  468 (513)
                      ......+..|...|..    .++.++|.++|++..+.+  .+...+..|...|... |     ++++|...|+...+.|
T Consensus       122 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          122 DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            1113334455555555    556666666666665441  1222344444444432 2     5666666666665555

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.54  E-value=1.8e-06  Score=67.86  Aligned_cols=99  Identities=10%  Similarity=-0.045  Sum_probs=52.7

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010320          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI  233 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li  233 (513)
                      .+...+..+...+.+.|++++|.+.|++..+....+...|..+...+...|++++|++.|++..+.  .+.+...+..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la   91 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA   91 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence            344455555555555555555555555555544445555555555555555555555555555543  122344555555


Q ss_pred             HHHHhcCChhHHHHHHHHHHH
Q 010320          234 SVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      .++.+.|++++|...|++..+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            555555555555555555544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.52  E-value=9.4e-06  Score=69.90  Aligned_cols=129  Identities=12%  Similarity=-0.028  Sum_probs=105.7

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+..+...+...|++++|.+.|++...   ++...|..+...|...|++++|++.|++..+.  .+.+...|..+..++.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence            345566777889999999999988742   37788999999999999999999999998875  2456788899999999


Q ss_pred             hcCChhHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010320          238 RLLLVDHMEAAFQEIKDSNLS--------------P-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  291 (513)
                      ..|++++|+..|++..+....              | +...|..+..+|.+.|++++|.+.|++..+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            999999999999998875322              1 12778888899999999999999999998743

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.52  E-value=6e-06  Score=67.79  Aligned_cols=131  Identities=8%  Similarity=-0.039  Sum_probs=99.7

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ...|..+...+...|++++|...|++..+.  .+.+...+..+..++...|++++|...|++..+... .+...|..+..
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~   89 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence            556778888888999999999999988864  244678888888889999999999999998887643 36778888888


Q ss_pred             HHHHccCHHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHh
Q 010320          270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTY--LLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      ++.+.|++++|.+.|++..+.. ..+...+  ..+...+...|++++|.+.++....
T Consensus        90 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           90 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            8889999999999998887642 1234444  3334446677888888888776543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.51  E-value=3.7e-05  Score=70.06  Aligned_cols=160  Identities=5%  Similarity=-0.132  Sum_probs=116.8

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI------VTYNTLISVFGRLLLVDHMEAAFQEIKDSNL---SP  259 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p  259 (513)
                      ....+...+..+...|++++|.+.+.+..+..  +.+.      ..+..+...+...|++++|+..|++..+...   .+
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            44566677888999999999999999888642  2222      2344566677888999999999999875321   12


Q ss_pred             C--HHHHHHHHHHHHHccCHHHHHHHHHHHHc----CCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc----C
Q 010320          260 N--VFTYNYLIAGYMTAWMWGKVEEIYQMMKA----GPVMP--DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV----D  327 (513)
Q Consensus       260 ~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~  327 (513)
                      .  ..+|+.+...|...|++++|++.|++..+    .+-.+  ...++..+...|...|++++|.+.+++..+..    .
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~  231 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence            2  45889999999999999999999998763    11111  12688899999999999999999998876531    1


Q ss_pred             CC-cHHHHHHHHHHHHhcCChhHH
Q 010320          328 GK-EFPLIRAMICAYSKCSVTDRI  350 (513)
Q Consensus       328 ~~-~~~~~~~li~~~~~~g~~~~a  350 (513)
                      .. -..+|..+...|.+.|+.++|
T Consensus       232 ~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          232 MALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHH
Confidence            11 145667777777777777766

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.51  E-value=7.2e-06  Score=63.37  Aligned_cols=97  Identities=14%  Similarity=0.098  Sum_probs=63.7

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ...|..+...+...|++++|.+.|+++.+.  .+.+..++..+...+.+.|++++|..+|+++.+... .+..++..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~   85 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGN   85 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHH
Confidence            456666677777777777777777777654  234556666677777777777777777777665432 35566666666


Q ss_pred             HHHHccCHHHHHHHHHHHHc
Q 010320          270 GYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~  289 (513)
                      .+.+.|++++|.+.|+++.+
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           86 AYYKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHH
Confidence            66666777777776666655

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.50  E-value=2.8e-06  Score=68.66  Aligned_cols=101  Identities=4%  Similarity=0.019  Sum_probs=56.8

Q ss_pred             CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320          400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM  479 (513)
Q Consensus       400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  479 (513)
                      |.+...+..+...+.+.|++++|...|+++.+... -+...|..+..+|...|++++|+..|++..+.+ +-+...|..+
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l  110 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT  110 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence            33444455555556666666666666666554432 244555555566666666666666666655544 3345555566


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHC
Q 010320          480 YYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       480 i~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      ..+|.+.|++++|.+.|++..+.
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            66666666666666666655543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.49  E-value=0.00018  Score=66.16  Aligned_cols=148  Identities=9%  Similarity=-0.077  Sum_probs=109.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010320          194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM  272 (513)
Q Consensus       194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  272 (513)
                      +.+-....+.+..++|+++++++...  -+-+..+|+.--..+...| .+++++.+++.+.....+ +..+|+.-...+.
T Consensus        58 ~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~  134 (349)
T 3q7a_A           58 DYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD  134 (349)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence            33333344455667999999999975  2445667888888888888 599999999999987764 8889999888888


Q ss_pred             Hc-c-CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010320          273 TA-W-MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP--------RMEKIYELVKHHVDGKEFPLIRAMICAYS  342 (513)
Q Consensus       273 ~~-g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (513)
                      +. + ++++++++++++.+..- -|..+|+.-.-.+.+.|.++        ++++.++++.+.. +.|...|+-....+.
T Consensus       135 ~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~  212 (349)
T 3q7a_A          135 RISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV  212 (349)
T ss_dssp             HHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred             HhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            77 7 89999999999998653 36777777666666666565        7888888888764 346777776666666


Q ss_pred             hcCC
Q 010320          343 KCSV  346 (513)
Q Consensus       343 ~~g~  346 (513)
                      +.+.
T Consensus       213 ~l~~  216 (349)
T 3q7a_A          213 SRPG  216 (349)
T ss_dssp             TSTT
T ss_pred             hccc
Confidence            5553

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.49  E-value=3.6e-06  Score=71.87  Aligned_cols=158  Identities=4%  Similarity=-0.082  Sum_probs=68.1

Q ss_pred             HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCcccchHHHHHHHHHhcCC
Q 010320          307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI----PEKEYRPWLNVLLIRVYAKEDC  382 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~  382 (513)
                      ...|++++|.++++.+... ......++..+...|...|+++.|...++.....    .........+..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            3567777777755444331 2234455666666666666666555443322221    1111111112234445555555


Q ss_pred             HHHHHHHHHHHHhc---CC-CC-chHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCcc-cHhhHHHHHHHHHhcC
Q 010320          383 LEEMEKSINDAFEH---KT-SV-TTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRL-CRSLYHSKMVMYASQR  452 (513)
Q Consensus       383 ~~~a~~~~~~~~~~---~~-~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g  452 (513)
                      +++|.+.+++....   .. .+ .....+..+...+...|++++|...+++..+.    +... ...++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            55555555544432   11 11 12233444455555555555555555544321    1100 1122344444455555


Q ss_pred             CHHHHHHHHHHHH
Q 010320          453 RVEEMESVLKEME  465 (513)
Q Consensus       453 ~~~~A~~~~~~m~  465 (513)
                      ++++|...+++..
T Consensus       162 ~~~~A~~~~~~al  174 (203)
T 3gw4_A          162 NLLEAQQHWLRAR  174 (203)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555554443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.46  E-value=2.5e-06  Score=75.75  Aligned_cols=188  Identities=6%  Similarity=-0.080  Sum_probs=118.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHH-------HHHhcccCCHHHHHHHHHHHHhccCC------C--------
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKG-------IKFAGRINNVDLAADLFAEAANKHLK------T--------  189 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~~~~~------~--------  189 (513)
                      .+++..|.+.|..+.+..    |-....|.-+       ...+.+.++..+++..+..-.+..+.      +        
T Consensus        19 ~~d~~~A~~~F~~a~~~d----P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYD----ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred             CCCHHHHHHHHHHHHHhC----hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence            456777777777776652    3356666665       34455555555555544444331100      1        


Q ss_pred             -------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--
Q 010320          190 -------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN--  260 (513)
Q Consensus       190 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--  260 (513)
                             ...+-.....+...|++++|.++|+.+...   .|+......+...+.+.+++++|+..|+...... .|.  
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~  170 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA  170 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence                   223344566677788888888888877642   3554455566667778888888888887555431 111  


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010320          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                      ...+..+-.++.+.|++++|+..|++.......|.  .........++.+.|+.++|..+|+++....
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            23566677778888888888888888775443243  3355666677778888888888888887764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.45  E-value=1.9e-06  Score=78.12  Aligned_cols=194  Identities=6%  Similarity=-0.112  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010320          226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG  305 (513)
Q Consensus       226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  305 (513)
                      ...+..+...+.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|++.+++..+.. .-+...+..+..+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   81 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            34455555555555555555555555554322 145555555556666666666666666555432 1135555566666


Q ss_pred             HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHH
Q 010320          306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE  385 (513)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  385 (513)
                      +...|++++|...|+...+.... +...+...+....+..   +...... ........ .+.... .+..+ ..|++++
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~-~~~i~~-~l~~l-~~~~~~~  153 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKRWNS-IEERRIHQ-ESELHS-YLTRL-IAAERER  153 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHHHHH-HHHTCCCC-CCHHHH-HHHHH-HHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHHHHH-HHHHHHhh-hHHHHH-HHHHH-HHHHHHH
Confidence            66666666666666655442110 0000000111111110   1111111 11111111 111111 12222 2577778


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHh
Q 010320          386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAES  431 (513)
Q Consensus       386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~  431 (513)
                      |.+.+++..+  ..|.+......+...+... +.+++|.++|..+.+
T Consensus       154 A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          154 ELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            8777776665  3344444444444444444 567778888876643

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.45  E-value=6.1e-06  Score=64.48  Aligned_cols=98  Identities=10%  Similarity=0.084  Sum_probs=64.7

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      ....|......|.+.|++++|++.|++..+.  -+.+...|..+..++.+.|++++|+..|++.++... .+...|..+.
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg   88 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKA   88 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHH
Confidence            3455666666777777777777777776653  234566667777777777777777777777666433 2456666666


Q ss_pred             HHHHHccCHHHHHHHHHHHHc
Q 010320          269 AGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      .++...|++++|++.|++..+
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           89 ACLVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            777777777777777776665

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.44  E-value=3.2e-07  Score=85.60  Aligned_cols=150  Identities=8%  Similarity=0.003  Sum_probs=109.9

Q ss_pred             ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----------------HHHHHH
Q 010320          168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----------------IVTYNT  231 (513)
Q Consensus       168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----------------~~~~~~  231 (513)
                      ..+++++|.+.|+...+..+.+...|..+...|.+.|++++|+..|++....   .|+                ...|..
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~n  201 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLN  201 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHH
Confidence            3455566666665544433336778888888999999999999999988864   233                477888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcC
Q 010320          232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSG  310 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g  310 (513)
                      +..++.+.|++++|+..|++..+... .+...|..+..+|...|++++|+..|++..+.  .| +...+..+..++.+.|
T Consensus       202 la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~  278 (336)
T 1p5q_A          202 LAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIR  278 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHH
Confidence            88888888888888888888887643 36777888888888888888888888887763  33 4667777777888888


Q ss_pred             ChHHH-HHHHHHHH
Q 010320          311 NLPRM-EKIYELVK  323 (513)
Q Consensus       311 ~~~~a-~~~~~~~~  323 (513)
                      +.++| ..+++.|.
T Consensus       279 ~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          279 RQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            87777 34555544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.44  E-value=5.9e-06  Score=76.98  Aligned_cols=131  Identities=8%  Similarity=-0.160  Sum_probs=113.7

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---------------IGTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      +...+..+...|.+.|++++|.+.|++..+..+.+               ...|..+..+|.+.|++++|+..|++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45678888899999999999999999998876655               689999999999999999999999999975


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHH
Q 010320          220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV-EEIYQMMK  288 (513)
Q Consensus       220 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~  288 (513)
                        .+.+...|..+..++...|++++|+..|++..+... -+...+..+..++.+.|+.+++ ..+|+.|.
T Consensus       226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              245788999999999999999999999999998654 3678899999999999999988 45666664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.44  E-value=9.7e-06  Score=63.22  Aligned_cols=120  Identities=5%  Similarity=-0.130  Sum_probs=79.3

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +...|..+...+...|++++|++.|++....  .+.+...+..+...+...|++++|...+++..+... .+...|..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~   87 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHH
Confidence            4556677777777777888888877777754  234566777777777777777777777777766432 2466666677


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010320          269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL  312 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~  312 (513)
                      ..+.+.|++++|.+.|++..+.. ..+...+..+..++...|++
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            77777777777777777766532 12455566666666555543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.43  E-value=7.2e-06  Score=72.84  Aligned_cols=127  Identities=13%  Similarity=0.043  Sum_probs=97.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc--HhhHHHHHHHHH
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC--RSLYHSKMVMYA  449 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~  449 (513)
                      .+...+...|++++|.++|..+...+  |.+. ....+...+.+.+++++|+..|+...... .|.  ...+..+-.++.
T Consensus       107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          107 GFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence            36677888999999999998877643  3344 45566678889999999999998554332 121  336777888999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          450 SQRRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       450 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      +.|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            99999999999999885443253  346677888899999999999999998765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.42  E-value=3.6e-06  Score=67.99  Aligned_cols=95  Identities=8%  Similarity=-0.087  Sum_probs=46.3

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+..+...+.+.|++++|.+.|++.....+.+...|..+..+|...|++++|++.|++..+.  -+-+...|..+..++.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHH
Confidence            33344444445555555555555555444444555555555555555555555555555432  1223344444555555


Q ss_pred             hcCChhHHHHHHHHHHH
Q 010320          238 RLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~  254 (513)
                      +.|++++|+..|++..+
T Consensus       116 ~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.42  E-value=1.5e-06  Score=70.26  Aligned_cols=97  Identities=8%  Similarity=-0.089  Sum_probs=43.0

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +...+..+...+...|++++|+..|++....  -+.+...|..+..++...|++++|+..|++...... -+...|..+.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg   96 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAA   96 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence            3344444444444555555555555544432  122344444444444444444444444444443321 1333444444


Q ss_pred             HHHHHccCHHHHHHHHHHHH
Q 010320          269 AGYMTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~  288 (513)
                      .+|...|++++|.+.|++..
T Consensus        97 ~~~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            44444444444444444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.41  E-value=2.2e-06  Score=69.19  Aligned_cols=93  Identities=9%  Similarity=-0.087  Sum_probs=67.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  451 (513)
                      .+...+...|++++|+..|++.+..  .|.+...|..+..+|...|++++|.+.++++...... +...+..+..+|...
T Consensus        26 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~  102 (148)
T 2vgx_A           26 SLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQX  102 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence            3666777778888888888877764  3445666777777788888888888888877765432 456667777778888


Q ss_pred             CCHHHHHHHHHHHHhC
Q 010320          452 RRVEEMESVLKEMENY  467 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~  467 (513)
                      |++++|...|++..+.
T Consensus       103 g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A          103 GELAEAESGLFLAQEL  118 (148)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            8888888888777654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.39  E-value=1.8e-06  Score=78.25  Aligned_cols=94  Identities=6%  Similarity=-0.145  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010320          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI  338 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  338 (513)
                      +...+..+...+.+.|++++|+..|++..+.  .| +...|..+..++.+.|++++|.+.++...+.. +.+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            4566777777777888888888888877663  23 56777777777888888888888887777652 23455556666


Q ss_pred             HHHHhcCChhHHHHHHHH
Q 010320          339 CAYSKCSVTDRIKKIEAL  356 (513)
Q Consensus       339 ~~~~~~g~~~~a~~~~~~  356 (513)
                      .+|...|++++|...++.
T Consensus        80 ~~~~~~g~~~~A~~~~~~   97 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQR   97 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH
Confidence            666666666655555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.38  E-value=1.9e-06  Score=71.98  Aligned_cols=120  Identities=7%  Similarity=0.019  Sum_probs=61.5

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHH-HHhcCCH--H
Q 010320          379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM-YASQRRV--E  455 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~  455 (513)
                      ..|++++|...+++.+...  |.+...+..+...|...|++++|...++++.+.... +...+..+... |...|++  +
T Consensus        22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence            3455555555555555432  233444555555566666666666666655443311 34444445555 4455555  6


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      +|...+++..+.+ +-+...+..+...|...|++++|.+.|++..+.
T Consensus        99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            6666666655543 234455555556666666666666666655544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.36  E-value=1.2e-05  Score=63.10  Aligned_cols=98  Identities=11%  Similarity=0.035  Sum_probs=55.7

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      +...|..+...+...|++++|++.|++..+.  .+.+...+..+...+...|++++|+..|++..+... .+...|..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la   91 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA   91 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence            4555666666666666666666666666542  123455555566666666666666666666555332 2445555555


Q ss_pred             HHHHHccCHHHHHHHHHHHHc
Q 010320          269 AGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      .++.+.|++++|.+.|++..+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            555555556665555555544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.35  E-value=2.5e-05  Score=59.50  Aligned_cols=95  Identities=16%  Similarity=0.030  Sum_probs=48.6

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG  237 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~  237 (513)
                      .+..+...+...|++++|.+.|++.....+.+...|..+...+...|++++|...+++..+.  .+.+...+..+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence            34444455555555555555555555544334555555555555555555555555555443  1223444555555555


Q ss_pred             hcCChhHHHHHHHHHHH
Q 010320          238 RLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       238 ~~g~~~~A~~~~~~m~~  254 (513)
                      ..|++++|...|++..+
T Consensus        84 ~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HTTCHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHH
Confidence            55555555555555544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.35  E-value=9.7e-07  Score=75.38  Aligned_cols=151  Identities=5%  Similarity=-0.085  Sum_probs=82.7

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--------------HH
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--------------IV  227 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--------------~~  227 (513)
                      .+......|+++++.+.|+.-..........+..+...+...|++++|++.|++......-.|+              ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            3444455666777776666444332235567777788888888888888888888753111111              15


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHH
Q 010320          228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGY  306 (513)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~  306 (513)
                      .|..+..++.+.|++++|+..+++..+... .+...|..+..+|...|++++|++.|++..+.  .| +...+..+..++
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHH
Confidence            566666666666666666666666665432 24556666666666666666666666666552  23 344555555555


Q ss_pred             HhcCChHHH
Q 010320          307 AHSGNLPRM  315 (513)
Q Consensus       307 ~~~g~~~~a  315 (513)
                      ...++.+++
T Consensus       167 ~~~~~~~~~  175 (198)
T 2fbn_A          167 NKLKEARKK  175 (198)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.35  E-value=0.00086  Score=61.30  Aligned_cols=164  Identities=6%  Similarity=-0.100  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C
Q 010320          174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGL----------SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL--L  241 (513)
Q Consensus       174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g--~  241 (513)
                      +|+++++.+...++.+..+||.--..+...+.          +++++.+++.+...  -+-+..+|+.-.-.+.+.|  .
T Consensus        48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCccc
Confidence            55666666655555454455443333322222          45555666655543  2334455555555555555  2


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-----------
Q 010320          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM-WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS-----------  309 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----------  309 (513)
                      +++++.+++++.+... .|..+|+.-...+...|. ++++++.++++.+..+. |...|+.....+.+.           
T Consensus       126 ~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~  203 (331)
T 3dss_A          126 WARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR  203 (331)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------C
T ss_pred             HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccc
Confidence            5566666666665443 255566655555555555 35666666666554322 444555444444333           


Q ss_pred             ---CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010320          310 ---GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS  342 (513)
Q Consensus       310 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  342 (513)
                         +.++++++.++...... +.|...|+-+-..+.
T Consensus       204 ~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          204 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG  238 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence               23556666666666542 345555654433333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.34  E-value=1.4e-05  Score=62.26  Aligned_cols=96  Identities=8%  Similarity=-0.106  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      ..+..+...+.+.|++++|.+.|++..+..+.+...|..+..+|.+.|++++|++.|++..+.  -+-+...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence            345555556666666666666666666655556666666666666666666666666666653  123455666666666


Q ss_pred             HhcCChhHHHHHHHHHHH
Q 010320          237 GRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~  254 (513)
                      ...|++++|...|++..+
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            666666666666666654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.34  E-value=7.9e-06  Score=61.80  Aligned_cols=98  Identities=13%  Similarity=-0.021  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP--SIVTYNTLI  233 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p--~~~~~~~li  233 (513)
                      ...+..+...+.+.|++++|...|++..+..+.+...|..+...+...|++++|++.|++..+.  .+.  +...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHH
Confidence            3445555566666666666666666666555445566666666666666666666666666643  122  355666666


Q ss_pred             HHHHhc-CChhHHHHHHHHHHHC
Q 010320          234 SVFGRL-LLVDHMEAAFQEIKDS  255 (513)
Q Consensus       234 ~~~~~~-g~~~~A~~~~~~m~~~  255 (513)
                      .++.+. |++++|.+.|++..+.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhc
Confidence            666666 6666666666666554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.30  E-value=1.7e-05  Score=67.59  Aligned_cols=131  Identities=12%  Similarity=-0.080  Sum_probs=98.1

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH----------------hHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 010320          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI----------------GTYNALLGAYMYNGLSDKCQSLFRDLKKEA  220 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  220 (513)
                      ..+..+...+.+.|++++|.+.|++..+....+.                ..|..+..+|...|++++|+..|++..+. 
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-  117 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-  117 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence            3556677778889999999999998887544333                78888999999999999999999999875 


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHcC
Q 010320          221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAG  290 (513)
Q Consensus       221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~  290 (513)
                       .+.+...|..+..++...|++++|...|++..+... -+...+..+..++...++.+++. ..|..|...
T Consensus       118 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          118 -DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             -STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC------------
T ss_pred             -CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             245678899999999999999999999999987643 26778888888888877777766 555555543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.30  E-value=3.2e-05  Score=60.13  Aligned_cols=97  Identities=8%  Similarity=0.046  Sum_probs=64.4

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ...|..+...+.+.|++++|+..|++..+.  .+.+...|..+..++.+.|++++|+..|++..+... -+...|..+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~   80 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence            345666666777777777777777777654  234566677777777777777777777777766533 24566666666


Q ss_pred             HHHHccCHHHHHHHHHHHHc
Q 010320          270 GYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ++...|++++|.+.|++..+
T Consensus        81 ~~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           81 AQIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHH
Confidence            77777777777777766655

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.28  E-value=5.6e-05  Score=59.64  Aligned_cols=99  Identities=12%  Similarity=-0.069  Sum_probs=73.1

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010320          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI  233 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li  233 (513)
                      .+...+..+...+...|++++|...|+......+.+...|..+...+...|++++|+..|++..+.  .+.+...|..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence            466677777777777888888888888777766557777777777777788888888888777764  234566777777


Q ss_pred             HHHHhcCChhHHHHHHHHHHH
Q 010320          234 SVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      .++...|++++|+..|++..+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            777777777777777777664

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.27  E-value=1.2e-05  Score=62.74  Aligned_cols=97  Identities=10%  Similarity=0.051  Sum_probs=52.8

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCCC----HHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPS----IVTYNTL  232 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~p~----~~~~~~l  232 (513)
                      .+..+...+...|++++|...|++.....+.+...+..+...+...|++++|...|++...... ..++    ..+|..+
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            4455555555666666666666665555444555566666666666666666666665544210 0111    4455555


Q ss_pred             HHHHHhcCChhHHHHHHHHHHH
Q 010320          233 ISVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      ..++.+.|++++|.+.|++..+
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHH
Confidence            5555555555555555555554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.26  E-value=1.4e-05  Score=60.34  Aligned_cols=98  Identities=9%  Similarity=-0.079  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 010320          404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC--SKKTFWIMYY  481 (513)
Q Consensus       404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~  481 (513)
                      ..+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +.  +...|..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            3455566666677777777777776665442 245556666777777777777777777777654 33  4667777777


Q ss_pred             HHHhc-CCHhHHHHHHHHHHHCC
Q 010320          482 AYATC-GQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       482 ~~~~~-g~~~~A~~~~~~m~~~g  503 (513)
                      .+.+. |++++|.+.+++..+..
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcc
Confidence            77777 77777777777776553

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.26  E-value=1.7e-05  Score=63.43  Aligned_cols=93  Identities=5%  Similarity=-0.126  Sum_probs=72.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  451 (513)
                      .+...+...|++++|+..|++.+...  |.+...|..+..+|...|++++|...+++..+.... +...+..+..+|...
T Consensus        23 ~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           23 ALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc
Confidence            36677788888888888888887743  445667778888888888888888888888766532 556677788888888


Q ss_pred             CCHHHHHHHHHHHHhC
Q 010320          452 RRVEEMESVLKEMENY  467 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~  467 (513)
                      |++++|...|+...+.
T Consensus       100 g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A          100 GDLDGAESGFYSARAL  115 (142)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            8888888888887764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.25  E-value=2e-05  Score=61.62  Aligned_cols=97  Identities=10%  Similarity=0.028  Sum_probs=50.7

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCC----HHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPS----IVTYNTL  232 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~----~~~~~~l  232 (513)
                      .+..+...+.+.|++++|++.|++..+..+.+...|+.+..+|.+.|++++|++.|++..+.. ...++    ..+|..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            344455555666666666666666655544455566666666666666666666665554320 00111    1234444


Q ss_pred             HHHHHhcCChhHHHHHHHHHHH
Q 010320          233 ISVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      ..++...|++++|++.|++..+
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            4455555555555555555443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.24  E-value=2e-05  Score=63.02  Aligned_cols=93  Identities=11%  Similarity=-0.124  Sum_probs=49.1

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010320          160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL  239 (513)
Q Consensus       160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~  239 (513)
                      ..+...+.+.|++++|...|++.....+.+...|..+..+|...|++++|+..|++....  -+-+...|..+..++...
T Consensus        22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHc
Confidence            334444555555555555555555554445555555555555555555555555555543  122334455555555555


Q ss_pred             CChhHHHHHHHHHHH
Q 010320          240 LLVDHMEAAFQEIKD  254 (513)
Q Consensus       240 g~~~~A~~~~~~m~~  254 (513)
                      |++++|...|++..+
T Consensus       100 g~~~~A~~~~~~al~  114 (142)
T 2xcb_A          100 GDLDGAESGFYSARA  114 (142)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555555543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.23  E-value=3.1e-05  Score=63.52  Aligned_cols=99  Identities=11%  Similarity=-0.037  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      +...+..+...+.+.|++++|++.|++..+..+.+...|..+..+|.+.|++++|+..|++..+.  .+-+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            44555666666667777777777777766665556667777777777777777777777776653  1334566666666


Q ss_pred             HHHhcCChhHHHHHHHHHHHC
Q 010320          235 VFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      ++...|++++|+..|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            777777777777777666653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=0.00063  Score=65.54  Aligned_cols=189  Identities=8%  Similarity=-0.109  Sum_probs=100.9

Q ss_pred             HhcccCCHHHHHHHHHHHHhccCC--C---------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010320          165 FAGRINNVDLAADLFAEAANKHLK--T---------------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV  227 (513)
Q Consensus       165 ~~~~~g~~~~a~~~~~~m~~~~~~--~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~  227 (513)
                      .+.+.|++++|.+.|..+.+....  +               ..++..+...|...|++++|.+.+..+....+..++..
T Consensus        13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~   92 (434)
T 4b4t_Q           13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK   92 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence            345566677777776666554322  1               11355666677777777777777766554211122221


Q ss_pred             ----HHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcC--CC--CC
Q 010320          228 ----TYNTLISVFGRLLLVDHMEAAFQEIKD----SNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG--PV--MP  294 (513)
Q Consensus       228 ----~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p  294 (513)
                          +.+.+-..+...|+.+.|..++++...    .+..+. ..++..+...|...|++++|..++++....  +.  .+
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~  172 (434)
T 4b4t_Q           93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP  172 (434)
T ss_dssp             HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence                222233333445666777666666542    222222 345666666777777777777776665431  11  11


Q ss_pred             -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCC-C-c--HHHHHHHHHHHHhcCChhHHHHH
Q 010320          295 -DTNTYLLLLRGYAHSGNLPRMEKIYELVKHH--VDG-K-E--FPLIRAMICAYSKCSVTDRIKKI  353 (513)
Q Consensus       295 -~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~li~~~~~~g~~~~a~~~  353 (513)
                       ...+|..++..|...|++++|..+++.....  ... | .  ...+..+...+...|+++.|...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~  238 (434)
T 4b4t_Q          173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY  238 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence             1456666677777777777777777665431  111 1 1  23444455555566666655443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.21  E-value=0.00012  Score=55.61  Aligned_cols=98  Identities=9%  Similarity=-0.057  Sum_probs=66.6

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA  269 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  269 (513)
                      ...|..+...+...|++++|...|++....  .+.+...+..+...+...|++++|...+++..+... .+...|..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~   80 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence            445666677777777777777777777654  233566677777777777777777777777766432 24666666777


Q ss_pred             HHHHccCHHHHHHHHHHHHcC
Q 010320          270 GYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       270 ~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      ++...|++++|.+.|++..+.
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHhhHHHHHHHHHHHHHc
Confidence            777777777777777776653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.21  E-value=2.9e-05  Score=63.70  Aligned_cols=94  Identities=5%  Similarity=-0.095  Sum_probs=80.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  451 (513)
                      .+...+...|++++|++.|++.++..  |.+...|..+..+|...|++++|+..+++..+.... +...|..+..+|...
T Consensus        16 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~   92 (164)
T 3sz7_A           16 SEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARFDM   92 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            57788889999999999999988853  446777889999999999999999999998876633 577888899999999


Q ss_pred             CCHHHHHHHHHHHHhCC
Q 010320          452 RRVEEMESVLKEMENYK  468 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~  468 (513)
                      |++++|...|++..+..
T Consensus        93 g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           93 ADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhC
Confidence            99999999999988754

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.21  E-value=3.7e-05  Score=60.00  Aligned_cols=98  Identities=7%  Similarity=-0.071  Sum_probs=64.3

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHH
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL--SPN----VFT  263 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~  263 (513)
                      ...+..+...+.+.|++++|++.|++..+.  .+-+...|+.+..+|.+.|++++|++.|++.++...  .++    ..+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            345667777777788888888888777754  234566777777777777777777777777664321  111    134


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          264 YNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      |..+..++...|++++|++.|++...
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55566666666777777777766554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.19  E-value=2.3e-05  Score=61.10  Aligned_cols=109  Identities=7%  Similarity=-0.037  Sum_probs=70.0

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHH
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL--SPN----VFT  263 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~  263 (513)
                      ...|..+...+...|++++|...|++....  .+.+...+..+...+...|++++|...+++..+...  .++    ..+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            345666777777777788888777777754  234566677777777777777777777777665321  112    556


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010320          264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL  302 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  302 (513)
                      |..+..++.+.|++++|.+.|++..+.  .|+......+
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l  118 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence            666666677777777777777766653  2444444333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.18  E-value=7e-05  Score=59.85  Aligned_cols=100  Identities=9%  Similarity=-0.067  Sum_probs=64.2

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN  230 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~  230 (513)
                      .+...+..+...+.+.|++++|.+.|++..+..+.+   ...|..+...|...|++++|++.|++..+.  .+.+...|.
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~  103 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALY  103 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHH
Confidence            355566666666677777777777777766654433   566666666677777777777777766653  123455666


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHC
Q 010320          231 TLISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      .+..++...|++++|...|++..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            6666666667777777766666654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.17  E-value=4.9e-05  Score=59.95  Aligned_cols=93  Identities=8%  Similarity=-0.101  Sum_probs=63.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ  451 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  451 (513)
                      .+...+...|++++|...|.+.+...  |.+...|..+...+...|++++|...+++..+.... +...+..+..+|...
T Consensus        14 ~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~   90 (137)
T 3q49_B           14 EQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLEM   90 (137)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHH
Confidence            46666777777777777777776643  334556777777777777777777777777655422 456666777777777


Q ss_pred             CCHHHHHHHHHHHHhC
Q 010320          452 RRVEEMESVLKEMENY  467 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~  467 (513)
                      |++++|...|++..+.
T Consensus        91 ~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           91 ESYDEAIANLQRAYSL  106 (137)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            7777777777766643

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.15  E-value=0.00017  Score=69.59  Aligned_cols=197  Identities=11%  Similarity=-0.002  Sum_probs=106.5

Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCC-C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCcH
Q 010320          269 AGYMTAWMWGKVEEIYQMMKAGPVMP-D---------------TNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VDGKEF  331 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~---------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~  331 (513)
                      ..+.+.|++++|++.|.++.+..-.. +               ...+..+...|...|++++|.+.+..+.+. +..++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            45678899999999999987743211 1               134677888899999999999888876552 111222


Q ss_pred             H----HHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC
Q 010320          332 P----LIRAMICAYSKCSVTDRIKKIEALMRL----IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTS  399 (513)
Q Consensus       332 ~----~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~  399 (513)
                      .    +.+.+-..+...|+.+.+.+.++....    ..........+..+...|...|++++|..++++....    +..
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence            1    222222233344555555554433322    1111111122234566666666666666666654432    222


Q ss_pred             CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320          400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRLC--RSLYHSKMVMYASQRRVEEMESVLKEME  465 (513)
Q Consensus       400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~  465 (513)
                      +....++..++..|...|++++|..+++.....    +..+.  ...+..+...+...|++++|...|.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            333445566666666666666666666655321    11111  2334444455556666666666665554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.12  E-value=3.4e-05  Score=59.66  Aligned_cols=91  Identities=11%  Similarity=-0.073  Sum_probs=51.3

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~  241 (513)
                      +...+.+.|++++|...|++..+..+.+...|..+..++...|++++|+..|++..+.  -+-+...+..+..++.+.|+
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            3444555566666666666665555445556666666666666666666666655543  12234455555555556666


Q ss_pred             hhHHHHHHHHHHH
Q 010320          242 VDHMEAAFQEIKD  254 (513)
Q Consensus       242 ~~~A~~~~~~m~~  254 (513)
                      +++|+..|++..+
T Consensus       101 ~~~A~~~~~~al~  113 (121)
T 1hxi_A          101 ANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666655554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.10  E-value=3.5e-05  Score=62.58  Aligned_cols=96  Identities=10%  Similarity=-0.026  Sum_probs=46.4

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCC--C----HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLK--T----IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IV  227 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~  227 (513)
                      ++..+...+...|++++|.+.+++..+....  +    ..++..+...+...|++++|.+.|++......-..+    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4455555556666666666666655432111  1    235555555666666666666666554432000011    22


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHH
Q 010320          228 TYNTLISVFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~  253 (513)
                      .+..+...+...|++++|...+++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34444444445555555554444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.09  E-value=0.0035  Score=57.26  Aligned_cols=185  Identities=10%  Similarity=-0.041  Sum_probs=130.3

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC----------HHHHHHHHHHHHhccCCCHhHHHHHHHHHHH
Q 010320          133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN----------VDLAADLFAEAANKHLKTIGTYNALLGAYMY  202 (513)
Q Consensus       133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~  202 (513)
                      ..+.|+++++.+...    .|-+..+|+.--.++...+.          +++++.+++.+....+++..+|+.-...+.+
T Consensus        45 ~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~  120 (331)
T 3dss_A           45 LDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  120 (331)
T ss_dssp             CSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence            445677777777653    23355556544333333332          6788999999998888888999988888888


Q ss_pred             cCC--hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----
Q 010320          203 NGL--SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA-----  274 (513)
Q Consensus       203 ~g~--~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----  274 (513)
                      .|+  +++++++++.+.+.  -+-|-..|+.-.-++...|. ++++++.++++.+..+ -|...|+.....+.+.     
T Consensus       121 l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~  197 (331)
T 3dss_A          121 LPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD  197 (331)
T ss_dssp             CSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC-
T ss_pred             cCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccc
Confidence            774  78999999999875  35677888888877888887 5899999999998765 4888888887777665     


Q ss_pred             ---------cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhc
Q 010320          275 ---------WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS-----------GNLPRMEKIYELVKHH  325 (513)
Q Consensus       275 ---------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~  325 (513)
                               +.++++++.+++..... +-|...|+-+-..+.+.           +.++++++.++++.+.
T Consensus       198 ~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~  267 (331)
T 3dss_A          198 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL  267 (331)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence                     45788888888887643 22566666554444443           2355566666666554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.07  E-value=6.9e-05  Score=57.88  Aligned_cols=95  Identities=4%  Similarity=-0.174  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010320          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY  271 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  271 (513)
                      .+..+...+.+.|++++|+..|++..+.  -+-+...|..+..++...|++++|+..|++..+.... +...|..+..++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~   95 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH   95 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            4556667788889999999999888865  2446778888888888889999999999888876432 667888888888


Q ss_pred             HHccCHHHHHHHHHHHHc
Q 010320          272 MTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       272 ~~~g~~~~a~~~~~~m~~  289 (513)
                      .+.|++++|+..|++..+
T Consensus        96 ~~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            888888888888888876

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.07  E-value=4.5e-05  Score=61.92  Aligned_cols=135  Identities=11%  Similarity=-0.063  Sum_probs=96.3

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS-PN----  260 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----  260 (513)
                      ..++..+...+...|++++|++.|++..+...-.++.    .++..+...+...|++++|...+++..+.... .+    
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            4578888888999999999999998876531111221    46778888888999999999998887642100 11    


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010320          261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      ..++..+...+...|++++|.+.+++..+.    +-.+ ...++..+...+...|++++|.+.+++..+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            456777778888888999988888876542    2111 145677777888888888888888877655

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=0.00023  Score=56.69  Aligned_cols=97  Identities=7%  Similarity=-0.102  Sum_probs=49.3

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY  264 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  264 (513)
                      +...+..+...+...|++++|++.|++..+.   .|+    ...|..+..++...|++++|+..+++..+... .+...|
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHH
Confidence            4455555555555556666666666555532   344    34445555555555555555555555544321 134444


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          265 NYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       265 ~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ..+..++...|++++|.+.|++..+
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4444555555555555555554443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.04  E-value=0.00025  Score=55.03  Aligned_cols=91  Identities=15%  Similarity=-0.008  Sum_probs=57.9

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLKTI---GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLIS  234 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~  234 (513)
                      +...+.+.|++++|.+.|+...+..+.+.   ..+..+..++...|++++|+..|++..+.   .|+    ...+..+..
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHHH
Confidence            44455666777777777777666544333   46666666677777777777777776654   232    455666666


Q ss_pred             HHHhcCChhHHHHHHHHHHHC
Q 010320          235 VFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      ++.+.|++++|...|+++.+.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            666777777777777666654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.03  E-value=2.4e-05  Score=76.64  Aligned_cols=121  Identities=7%  Similarity=-0.116  Sum_probs=96.6

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~  241 (513)
                      +...+.+.|++++|.+.|++..+..+.+..+|..+..+|.+.|++++|++.|++..+.  -+-+..+|..+..++.+.|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            3445678899999999999999887778999999999999999999999999999864  24467889999999999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHccCHHHHHHHHH
Q 010320          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAG--YMTAWMWGKVEEIYQ  285 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~  285 (513)
                      +++|++.|++..+.... +...+..+..+  +.+.|++++|++.++
T Consensus        90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999875432 34455555555  888899999999998

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.02  E-value=9.4e-05  Score=72.00  Aligned_cols=143  Identities=6%  Similarity=0.008  Sum_probs=77.1

Q ss_pred             cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---------------HHHHHHHH
Q 010320          169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---------------IVTYNTLI  233 (513)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---------------~~~~~~li  233 (513)
                      .+++++|.+.|+...+..+.....|..+...|.+.|++++|+..|++..+..  +.+               ...|..+.
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla  324 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLA  324 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHH
Confidence            3344444444433332222245555555555556666666666665555421  111               35566666


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCh
Q 010320          234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNL  312 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~  312 (513)
                      .++.+.|++++|+..|++.++... .+...|..+..+|...|++++|+..|++..+.  .| +...+..+..++.+.++.
T Consensus       325 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          325 MCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence            666666666666666666665432 24566666666666666666666666666653  23 244555566666666665


Q ss_pred             HHHH
Q 010320          313 PRME  316 (513)
Q Consensus       313 ~~a~  316 (513)
                      +++.
T Consensus       402 ~~a~  405 (457)
T 1kt0_A          402 NERD  405 (457)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.99  E-value=1e-05  Score=78.90  Aligned_cols=119  Identities=8%  Similarity=-0.089  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010320          228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN--------------VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM  293 (513)
Q Consensus       228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  293 (513)
                      .|..+...+.+.|++++|+..|++..+....-.              ...|..+..+|.+.|++++|+..|++..+.. .
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p  348 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S  348 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence            444445555555555555555555444211110              3445555555555555555555555544421 1


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChh
Q 010320          294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD  348 (513)
Q Consensus       294 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  348 (513)
                      -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+
T Consensus       349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence            134445555555555555555555555554431 123334444444444444433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.97  E-value=2.3e-05  Score=76.67  Aligned_cols=121  Identities=11%  Similarity=-0.064  Sum_probs=93.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC
Q 010320          374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR  453 (513)
Q Consensus       374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  453 (513)
                      ...+.+.|++++|++.|++.++.  .|.+...|..+..+|.+.|++++|.+.+++..+... -+...|..+..+|.+.|+
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence            34456789999999999998885  455677899999999999999999999999987653 357788889999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHHH
Q 010320          454 VEEMESVLKEMENYKIDCSKKTFWIMYYA--YATCGQRRKVNQVLGL  498 (513)
Q Consensus       454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~  498 (513)
                      +++|.+.|++..+.+ +-+...+..+..+  +.+.|++++|++++++
T Consensus        90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999988764 3344556656555  8888999999999883

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.96  E-value=7.4e-05  Score=72.74  Aligned_cols=128  Identities=9%  Similarity=-0.023  Sum_probs=94.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhc-----C-CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCC-cc-cHhhH
Q 010320          375 RVYAKEDCLEEMEKSINDAFEH-----K-TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AGW-RL-CRSLY  441 (513)
Q Consensus       375 ~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~-~p-~~~~~  441 (513)
                      ..+...|++++|+.++++.++.     | ..|....+++.|..+|...|++++|..++++..+     .|. .| ...++
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3456778999999988877652     1 2334567789999999999999999998887643     231 23 34568


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          442 HSKMVMYASQRRVEEMESVLKEMEN-----YKI-DCS-KKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       442 ~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      +.|...|...|++++|+.++++..+     .|- .|+ ..+.+.+-.++...|.+++|..+++++++.
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999887664     231 122 345566778888899999999999988763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.95  E-value=0.00093  Score=66.63  Aligned_cols=172  Identities=6%  Similarity=-0.102  Sum_probs=118.9

Q ss_pred             CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010320          171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL----------SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL  240 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g  240 (513)
                      ..++|++.++++.+.++.+..+|+.--.++...|+          ++++++.++.+.+.  -+-+..+|+.-.-++.+.|
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence            34667777777777766666777766666666555          77777777777764  2445667777666677777


Q ss_pred             --ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--------
Q 010320          241 --LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW-MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS--------  309 (513)
Q Consensus       241 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------  309 (513)
                        +++++++.++++.+.... |..+|+.-...+.+.| .++++++.++++.+.... |...|+.....+.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence              567788888877776543 7777777777777777 777777777777765432 566666666665553        


Q ss_pred             ------CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010320          310 ------GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT  347 (513)
Q Consensus       310 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  347 (513)
                            +.++++.+.++...... +.+...|+-+-..+.+.+..
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred             cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence                  45688888888877753 45777888777777776653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.92  E-value=0.00022  Score=55.42  Aligned_cols=92  Identities=13%  Similarity=0.023  Sum_probs=58.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHH
Q 010320          194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPS-I---VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN---VFTYNY  266 (513)
Q Consensus       194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~  266 (513)
                      ..+...+...|++++|.+.|++..+.   .|+ .   ..+..+..++.+.|++++|...|++..+.... +   ...+..
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~   81 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK   81 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence            34555666777777777777777654   232 2   35666666777777777777777776654321 2   455666


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHc
Q 010320          267 LIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       267 li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +..++.+.|++++|...|+++.+
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Confidence            66666667777777777766665

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.88  E-value=0.00019  Score=67.56  Aligned_cols=121  Identities=6%  Similarity=-0.114  Sum_probs=74.5

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHh----------------ccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAAN----------------KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN  221 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~----------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g  221 (513)
                      .+..+...+.+.|++++|.+.|++..+                ....+...|..+..+|.+.|++++|++.+++..+.  
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--  302 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  302 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence            456667777788888888888887765                21124556666666666667777777766666642  


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH
Q 010320          222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE  281 (513)
Q Consensus       222 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  281 (513)
                      -+-+...|..+..++...|++++|+..|++..+... -+...+..+...+.+.++.+++.
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            123455666666666666666666666666665432 14455555555555555555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.83  E-value=4.3e-05  Score=58.57  Aligned_cols=89  Identities=8%  Similarity=-0.083  Sum_probs=69.9

Q ss_pred             hcCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHH
Q 010320          379 KEDCLEEMEKSINDAFEHKT-SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM  457 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  457 (513)
                      ..|++++|+..|++.++.+. .|.+...+..+...|...|++++|.+.+++..+.... +...+..+..+|.+.|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence            46888999999999888531 3556777888999999999999999999999876643 577788889999999999999


Q ss_pred             HHHHHHHHhCC
Q 010320          458 ESVLKEMENYK  468 (513)
Q Consensus       458 ~~~~~~m~~~~  468 (513)
                      ...|++.....
T Consensus        81 ~~~~~~al~~~   91 (117)
T 3k9i_A           81 VELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999887653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.82  E-value=0.00035  Score=56.95  Aligned_cols=98  Identities=12%  Similarity=0.041  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhc------------------cCCCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANK------------------HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK  217 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  217 (513)
                      ...+......+.+.|++++|.+.|++....                  ...+...|..+..+|.+.|++++|+..+++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345666777778888888888888887664                  22234566777777777777777777777776


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010320          218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       218 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      +.  -+.+...|..+..++...|++++|...|++..+.
T Consensus        91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            54  1344566777777777777777777777776654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.77  E-value=0.00041  Score=56.54  Aligned_cols=100  Identities=11%  Similarity=0.103  Sum_probs=54.1

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CC----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA------NI----------SPSIVTYNTLISVFGRLLLVDHMEAAFQEI  252 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------g~----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  252 (513)
                      ....+......+.+.|++++|+..|.+.....      .-          +-+...|..+..++.+.|++++|+..+++.
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            45677788888999999999999998877520      00          011233444444444444444444444444


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       253 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ++... .+...|..+..+|...|++++|...|++..+
T Consensus        90 l~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           90 LKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            44321 1344444444444444444444444444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.74  E-value=0.00045  Score=54.65  Aligned_cols=114  Identities=10%  Similarity=0.076  Sum_probs=90.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHH
Q 010320          380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVE  455 (513)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~  455 (513)
                      .+++++|.+.|++..+.+...  .  .  +...|...+.+++|.++|++..+.|   +...+..|-..|..    .++++
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~--a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMF--G--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT--H--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHh--h--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence            356888999998888876332  2  2  6666777788888999999988776   45667777777877    88999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC
Q 010320          456 EMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~  505 (513)
                      +|.+.|++..+.|   +...+..|...|..    .++.++|.++|++..+.|..
T Consensus        79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A           79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence            9999999998876   45677788888888    88999999999998888753

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.72  E-value=0.00018  Score=66.94  Aligned_cols=146  Identities=8%  Similarity=-0.068  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      ..+..+...+.+.|++++|...|++.......+..        +...|+.+++...   +.        ...|+.+..++
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~---l~--------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALA---VK--------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHH---HH--------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHH---HH--------HHHHHHHHHHH
Confidence            34556666777777777777777776654322210        0111111111111   10        02555666666


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHH-HHhcCChHH
Q 010320          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRG-YAHSGNLPR  314 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~  314 (513)
                      .+.|++++|+..+++..+... -+...|..+..+|...|++++|...|++..+.  .|+ ...+..+... ....+..+.
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666665432 24556666666666666666666666666552  233 2333333333 122344555


Q ss_pred             HHHHHHHHHh
Q 010320          315 MEKIYELVKH  324 (513)
Q Consensus       315 a~~~~~~~~~  324 (513)
                      +.++|..|..
T Consensus       318 a~~~~~~~l~  327 (338)
T 2if4_A          318 QKEMYKGIFK  327 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhC
Confidence            5666665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.71  E-value=0.002  Score=64.19  Aligned_cols=175  Identities=11%  Similarity=-0.016  Sum_probs=140.2

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC----------HHHHHHHHHHHHhccCCCHhHHHHHHHHH
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN----------VDLAADLFAEAANKHLKTIGTYNALLGAY  200 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~  200 (513)
                      +...++|++.++.+....    +-+..+|+.--.++.+.|+          ++++++.++.+.+..+++..+|+.-.-.+
T Consensus        42 ~~~~eeal~~~~~~l~~n----P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           42 GELDESVLELTSQILGAN----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (567)
T ss_dssp             TCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            445667888888887652    3467777776666666666          99999999999999888999999999889


Q ss_pred             HHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 010320          201 MYNG--LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA---  274 (513)
Q Consensus       201 ~~~g--~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---  274 (513)
                      .+.|  +++++++.++++.+.  -+-|..+|+.-..++.+.| .++++++.++++.+..+. |...|+.....+.+.   
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred             HHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence            9999  679999999999986  3567889998888888889 899999999999987664 889999988887773   


Q ss_pred             -----------cCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHH
Q 010320          275 -----------WMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPR  314 (513)
Q Consensus       275 -----------g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~  314 (513)
                                 +.++++++.+++....  .| |...|..+-..+.+.++.++
T Consensus       195 ~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          195 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence                       5678999999888773  34 56777777777766666433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.71  E-value=8e-05  Score=57.04  Aligned_cols=85  Identities=12%  Similarity=0.017  Sum_probs=52.6

Q ss_pred             cCCHHHHHHHHHHHHhcc---CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010320          169 INNVDLAADLFAEAANKH---LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM  245 (513)
Q Consensus       169 ~g~~~~a~~~~~~m~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A  245 (513)
                      .|++++|+..|++..+.+   +.+...|..+...|...|++++|++.|++..+.  .+-+...+..+..++.+.|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence            466666777777666653   225566666777777777777777777776654  133456666666777777777777


Q ss_pred             HHHHHHHHHC
Q 010320          246 EAAFQEIKDS  255 (513)
Q Consensus       246 ~~~~~~m~~~  255 (513)
                      +..|++..+.
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777666653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.70  E-value=0.0016  Score=52.04  Aligned_cols=94  Identities=9%  Similarity=-0.084  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--------H-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 010320          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--------I-----VTYNTLISVFGRLLLVDHMEAAFQEIKDS---  255 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---  255 (513)
                      .+......+.+.|++++|++.|++..+-   .|+        .     ..|+.+..++.+.|++++|+..+++.++.   
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4445555566667777777777666643   233        1     25555555566666666666555555542   


Q ss_pred             --CCCCC-HHHH----HHHHHHHHHccCHHHHHHHHHHHH
Q 010320          256 --NLSPN-VFTY----NYLIAGYMTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       256 --g~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~  288 (513)
                        .+.|+ ...|    .....++...|++++|+..|++..
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence              01232 3344    555555555555555555555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.68  E-value=0.00069  Score=54.24  Aligned_cols=96  Identities=11%  Similarity=0.049  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc-----------cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC
Q 010320          406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRL-----------CRSLYHSKMVMYASQRRVEEMESVLKEMENY-----KI  469 (513)
Q Consensus       406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~  469 (513)
                      +......+...|++++|.+.|++..+.....           +...|..+..++.+.|++++|+..+++..+.     .+
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3344444555566666666665554332110           1225666667777777777777777776664     11


Q ss_pred             CC-CHHHH----HHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320          470 DC-SKKTF----WIMYYAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       470 ~p-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      .| +...|    .....++...|++++|++.|++..+
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            33 34566    7777778888888888888877653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.67  E-value=0.00048  Score=64.81  Aligned_cols=120  Identities=8%  Similarity=-0.024  Sum_probs=88.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc--------------CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEH--------------KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR  438 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~  438 (513)
                      +...+.+.|++++|++.|++.++.              ...+....+|..+..+|.+.|++++|++.++++.+... -+.
T Consensus       229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~  307 (370)
T 1ihg_A          229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNT  307 (370)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhH
Confidence            444455555555555555554430              02234566788889999999999999999999987553 257


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010320          439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ  494 (513)
Q Consensus       439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  494 (513)
                      ..|..+..+|...|++++|...|++..+.. +-+...+..+...+...++.+++.+
T Consensus       308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          308 KALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888899999999999999999988765 4467777788888888877777654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.67  E-value=4.8e-05  Score=57.40  Aligned_cols=90  Identities=9%  Similarity=-0.094  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------HHH
Q 010320          156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-------IVT  228 (513)
Q Consensus       156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-------~~~  228 (513)
                      ...+..+...+.+.|++++|.+.|++..+..+.+...|..+..++.+.|++++|++.|++..+.   .|+       ...
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~   80 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHHH
Confidence            4455556666666666666666666666655556666666666666666666666666666642   333       334


Q ss_pred             HHHHHHHHHhcCChhHHHHH
Q 010320          229 YNTLISVFGRLLLVDHMEAA  248 (513)
Q Consensus       229 ~~~li~~~~~~g~~~~A~~~  248 (513)
                      +..+..++...|+.+.|...
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhH
Confidence            44444444444444444433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.63  E-value=0.00024  Score=66.11  Aligned_cols=144  Identities=6%  Similarity=-0.037  Sum_probs=88.2

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      ....|..+...+.+.|++++|+..|++....   .|+...       +...|+.+++...+   .       ...|+.+.
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla  237 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIA  237 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHH
Confidence            3556778888889999999999999998764   355432       22233334433222   1       13788899


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH-hcCCh
Q 010320          269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS-KCSVT  347 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~  347 (513)
                      .+|.+.|++++|+..+++..+.. .-+...|..+..+|...|++++|...|++..+.. +.+...+..+..... ..+..
T Consensus       238 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          238 ACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988743 2368899999999999999999999999988753 224445555554423 23434


Q ss_pred             hHHHHHH
Q 010320          348 DRIKKIE  354 (513)
Q Consensus       348 ~~a~~~~  354 (513)
                      +.+...+
T Consensus       316 ~~a~~~~  322 (338)
T 2if4_A          316 QKQKEMY  322 (338)
T ss_dssp             -------
T ss_pred             HHHHHHH
Confidence            4444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.56  E-value=0.00038  Score=51.44  Aligned_cols=65  Identities=17%  Similarity=0.064  Sum_probs=49.1

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      -+...+..+...|.+.|++++|++.|++..+..+.+...|..+..+|...|++++|++.|++..+
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            36667777777777788888888888877777666677777777888888888888887777664

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.55  E-value=0.0012  Score=52.16  Aligned_cols=110  Identities=7%  Similarity=-0.164  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 010320          171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR----LLLVDHME  246 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~  246 (513)
                      ++++|.+.|++..+.|.++..    |...|...+.+++|++.|++..+.    -+...+..|...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            445555555555544432222    444444444455555555555432    244444444444444    44555555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCC
Q 010320          247 AAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGP  291 (513)
Q Consensus       247 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  291 (513)
                      +.|++..+.|   +...+..|-..|..    .+++++|.++|++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            5555554432   33444444444444    444555555555444433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.53  E-value=0.001  Score=50.40  Aligned_cols=78  Identities=9%  Similarity=-0.091  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010320          175 AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       175 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      |.+.|++..+..+.+...|..+...|...|++++|+..|++..+.  .+.+...|..+..++...|++++|...|++..+
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455555555554445666666666666666666666666666543  123445566666666666666666666665553

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.50  E-value=0.0012  Score=64.34  Aligned_cols=95  Identities=11%  Similarity=0.055  Sum_probs=69.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCCc-c-cH
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEH------KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AGWR-L-CR  438 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~-p-~~  438 (513)
                      .|...|...|++++|+.++++.++-      ...|....+++.|...|...|++++|+.++++..+     .|.. | ..
T Consensus       356 nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  435 (490)
T 3n71_A          356 IASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK  435 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence            4667777777777777777665541      23444566788999999999999999999887643     3322 2 24


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          439 SLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      .+.+.+-.++...+.+++|+.+|..+++
T Consensus       436 ~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          436 DLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777788889999999999998876

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.48  E-value=0.0016  Score=46.54  Aligned_cols=62  Identities=15%  Similarity=0.133  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320          157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      ..+..+...+.+.|++++|.+.|++..+..+.+...|..+...+...|++++|++.|++..+
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            34455555555566666666666655554444555555555666666666666666665554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.40  E-value=0.0012  Score=49.94  Aligned_cols=79  Identities=11%  Similarity=-0.140  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010320          137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL  216 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  216 (513)
                      |+..++...+.    .+.+...+..+...|.+.|++++|.+.|++..+..+.+...|..+..+|...|++++|...|++.
T Consensus         4 a~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            4 ITERLEAMLAQ----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             HHHHHHHHHTT----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45566655543    24478899999999999999999999999999887778899999999999999999999999998


Q ss_pred             HHh
Q 010320          217 KKE  219 (513)
Q Consensus       217 ~~~  219 (513)
                      .+.
T Consensus        80 l~~   82 (115)
T 2kat_A           80 LAA   82 (115)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            753

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00091  Score=50.10  Aligned_cols=60  Identities=12%  Similarity=0.020  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010320          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  253 (513)
                      .|..+...+...|++++|++.|++..+.  .+.+...|..+..++.+.|++++|+..|++..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   65 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL   65 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3344444444444444444444444432  12233344444444444444444444444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.32  E-value=0.0031  Score=45.01  Aligned_cols=82  Identities=9%  Similarity=-0.005  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320          403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA  482 (513)
Q Consensus       403 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~  482 (513)
                      ...+..+...+...|++++|...+++..+... .+...+..+...|.+.|++++|...|++..+.+ +-+...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            44566667777777888888888877765542 245666777777778888888888888777654 3355566666555


Q ss_pred             HHhc
Q 010320          483 YATC  486 (513)
Q Consensus       483 ~~~~  486 (513)
                      +.+.
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.30  E-value=0.00073  Score=53.97  Aligned_cols=85  Identities=11%  Similarity=0.013  Sum_probs=58.8

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 010320          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS----------DKCQSLFRDLKKEANISP-SIVTYNTLISV  235 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~g~~p-~~~~~~~li~~  235 (513)
                      .+.+.+++|.+.++...+..+.+...|+.+..++...+++          ++|+..|++..+.   .| +..+|..+..+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHHH
Confidence            3556778888888888887777888888887777777664          4777777777753   33 45677777777


Q ss_pred             HHhcC-----------ChhHHHHHHHHHHH
Q 010320          236 FGRLL-----------LVDHMEAAFQEIKD  254 (513)
Q Consensus       236 ~~~~g-----------~~~~A~~~~~~m~~  254 (513)
                      |...|           ++++|++.|++..+
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~  119 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD  119 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence            76654           55666666665555

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.25  E-value=0.013  Score=53.89  Aligned_cols=50  Identities=10%  Similarity=-0.040  Sum_probs=33.4

Q ss_pred             CCCCHHHHHHHHHHhcc-----cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHH
Q 010320          152 TPMTKEEYTKGIKFAGR-----INNVDLAADLFAEAANKHLKTIGTYNALLGAYM  201 (513)
Q Consensus       152 ~~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~  201 (513)
                      .+.+...|...+.+...     .....+|..+|++..+..+.....|..+..+|.
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~  244 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI  244 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34577777777766532     234578888888888877666666666555554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.18  E-value=0.0017  Score=51.88  Aligned_cols=99  Identities=13%  Similarity=0.006  Sum_probs=67.1

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010320          201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV----------DHMEAAFQEIKDSNLSPNVFTYNYLIAG  270 (513)
Q Consensus       201 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~li~~  270 (513)
                      .+.+++++|++.++...+.  -+-+...|+.+..++...+++          ++|+..|++.++.... +..+|..+..+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence            4556778888888888765  245677888788888777664          4777778777775432 56677777777


Q ss_pred             HHHcc-----------CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010320          271 YMTAW-----------MWGKVEEIYQMMKAGPVMPDTNTYLLLLR  304 (513)
Q Consensus       271 ~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  304 (513)
                      |...|           ++++|++.|++..+  +.|+...|...+.
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~  132 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            77654           67777777777666  4566555544443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.08  E-value=0.003  Score=46.42  Aligned_cols=67  Identities=4%  Similarity=-0.007  Sum_probs=55.8

Q ss_pred             CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320          400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      |.+...+..+...|...|++++|.+.|++..+.... +...|..+..+|...|++++|.+.|++..+.
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            556777888999999999999999999998876633 5667888999999999999999999887653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.86  E-value=0.0057  Score=58.47  Aligned_cols=88  Identities=11%  Similarity=0.056  Sum_probs=66.2

Q ss_pred             hcCCHHHHHHHHHHHHhc-----C-CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCC-ccc-HhhHHHHH
Q 010320          379 KEDCLEEMEKSINDAFEH-----K-TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AGW-RLC-RSLYHSKM  445 (513)
Q Consensus       379 ~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~-~~~~~~li  445 (513)
                      ..|++++|+.++++.++.     | ..|....+++.|..+|...|++++|..++++..+     .|. .|+ ..+|+.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457889999988876652     1 2234467788999999999999999999987643     231 233 45588889


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh
Q 010320          446 VMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       446 ~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      ..|...|++++|+.++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.83  E-value=0.043  Score=57.49  Aligned_cols=46  Identities=4%  Similarity=0.011  Sum_probs=23.3

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010320          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK  288 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  288 (513)
                      ...|+++.|.++.+.+      .+...|..+...+.+.|+++.|++.|..+.
T Consensus       663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            3445555555554332      244555555555555555555555555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.75  E-value=0.0091  Score=57.11  Aligned_cols=93  Identities=6%  Similarity=0.008  Sum_probs=71.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cC-Cccc-Hhh
Q 010320          374 IRVYAKEDCLEEMEKSINDAFEHK------TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AG-WRLC-RSL  440 (513)
Q Consensus       374 i~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~-~~p~-~~~  440 (513)
                      +..+...|++++|+.++++.++..      ..+....+++.+..+|...|++++|+.+++++.+     .| ..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            455667789999999998887632      2233466789999999999999999999997753     22 2233 455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          441 YHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       441 ~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      ++.|...|...|++++|+.++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88899999999999999999987664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.71  E-value=0.074  Score=55.67  Aligned_cols=120  Identities=3%  Similarity=-0.032  Sum_probs=76.4

Q ss_pred             HHHHHcCChHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010320          198 GAYMYNGLSDKCQS-LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       198 ~~~~~~g~~~~A~~-~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                      ......+++++|.+ ++..+       ++......++..+.+.|..+.|.++.++-.            .-.......|+
T Consensus       607 ~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~  667 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQ  667 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTC
T ss_pred             hHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCC
Confidence            34456778888766 44221       112233677777888888888876663221            11234566788


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010320          277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK  351 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  351 (513)
                      +++|.++.+.+      .+...|..+...+.+.|+++.|+++|..+..         |..+...|...|+.+...
T Consensus       668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~  727 (814)
T 3mkq_A          668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV  727 (814)
T ss_dssp             HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence            88888876544      3567888888888888888888888887655         334455555566555433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.68  E-value=0.0076  Score=57.60  Aligned_cols=87  Identities=6%  Similarity=-0.011  Sum_probs=67.7

Q ss_pred             hcCcHHHHHHHHHHHHhc---CCc---c-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHH
Q 010320          415 RCNAVDKLANFVKRAESA---GWR---L-CRSLYHSKMVMYASQRRVEEMESVLKEMENY-----K-IDCS-KKTFWIMY  480 (513)
Q Consensus       415 ~~~~~~~a~~~~~~~~~~---~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li  480 (513)
                      ..|++++|+.++++..+.   -+.   | ...+++.|..+|...|++++|+.++++..+-     | -.|+ ..+|+.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            467899999999877531   122   2 2467899999999999999999999887652     2 1233 46788999


Q ss_pred             HHHHhcCCHhHHHHHHHHHHH
Q 010320          481 YAYATCGQRRKVNQVLGLMCK  501 (513)
Q Consensus       481 ~~~~~~g~~~~A~~~~~~m~~  501 (513)
                      ..|..+|++++|+.++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999988643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.52  E-value=0.013  Score=56.14  Aligned_cols=91  Identities=8%  Similarity=-0.123  Sum_probs=71.1

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHhcC---Cc----ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHH
Q 010320          410 VSSYFRCNAVDKLANFVKRAESAG---WR----LCRSLYHSKMVMYASQRRVEEMESVLKEMENY-----K-IDCS-KKT  475 (513)
Q Consensus       410 i~~~~~~~~~~~a~~~~~~~~~~~---~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~  475 (513)
                      +..+...|++++|.+++++..+..   +.    ....+++.+...|...|++++|+.++++...-     | -.|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            445667899999999999886431   11    23566899999999999999999999877642     2 1232 467


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          476 FWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       476 ~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      ++.|...|...|++++|+.++++..
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            8899999999999999999998764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.47  E-value=0.19  Score=46.12  Aligned_cols=141  Identities=11%  Similarity=0.020  Sum_probs=95.7

Q ss_pred             CCHhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cC--ChhHH---HHHHHHHH
Q 010320          188 KTIGTYNALLGAYMY--NG---LSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGR---LL--LVDHM---EAAFQEIK  253 (513)
Q Consensus       188 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~---~g--~~~~A---~~~~~~m~  253 (513)
                      .+...|...+++...  .+   ...+|+.+|++..+.   .|+ ...|..+.-++.-   .+  .-...   ...++...
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            388899998877543  33   358999999999975   566 3455444444321   11  11111   11222211


Q ss_pred             H-CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHH
Q 010320          254 D-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP  332 (513)
Q Consensus       254 ~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  332 (513)
                      . .....+..+|..+...+...|++++|...+++....+  |+...|..+...+.-.|++++|.+.+++....  .|...
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~  344 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN  344 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence            1 1124577888888877777899999999999998854  88888888888999999999999999988886  35555


Q ss_pred             HHH
Q 010320          333 LIR  335 (513)
Q Consensus       333 ~~~  335 (513)
                      +|.
T Consensus       345 t~~  347 (372)
T 3ly7_A          345 TLY  347 (372)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.45  E-value=0.19  Score=38.16  Aligned_cols=60  Identities=10%  Similarity=0.143  Sum_probs=28.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW  434 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  434 (513)
                      .+..+...|+-++-.+++.++..  ..++.+..+-.+..+|.+.|+..++.+++.++-+.|+
T Consensus        97 ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           97 ALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            34444455555555555544322  2222333444455555555555555555555555444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.29  E-value=0.068  Score=38.39  Aligned_cols=67  Identities=7%  Similarity=-0.037  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHHHHhcccCC---HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010320          153 PMTKEEYTKGIKFAGRINN---VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       153 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      +.|...+..+..++...++   .++|..+|++..+..+.++.....+...+.+.|++++|+..|+.+.+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3456666666666543333   577777777777766667777777777777777777777777777753

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.23  E-value=0.05  Score=39.28  Aligned_cols=58  Identities=16%  Similarity=0.047  Sum_probs=46.0

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHh-HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      ....+.+.|++++|.+.|++..+..+.+.. .|..+..+|...|++++|++.|++..+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            345566788888888888888877666777 8888888888888888888888888764

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.22  E-value=0.24  Score=37.66  Aligned_cols=121  Identities=12%  Similarity=0.157  Sum_probs=81.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-C----------------CcccHhhHH
Q 010320          380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA-G----------------WRLCRSLYH  442 (513)
Q Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~----------------~~p~~~~~~  442 (513)
                      .|.+++..++..+.....    +..-||-+|--....-+-+-..++++.+-+. .                ...+...++
T Consensus        20 dG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd   95 (172)
T 1wy6_A           20 DGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN   95 (172)
T ss_dssp             TTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred             hhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHH
Confidence            466666677776665532    2223444444444444444444444443210 0                012344567


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010320          443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  505 (513)
                      .-++.+..+|+-|+-.+++.++.. +.+|++...-.+..+|.+-|+..+|.+++.+.-+.|++
T Consensus        96 ~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           96 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            778888899999999999999754 34788899999999999999999999999999999975

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.15  E-value=0.014  Score=42.33  Aligned_cols=59  Identities=10%  Similarity=0.082  Sum_probs=36.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR-IMRCIVSSYFRCNAVDKLANFVKRAESAG  433 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~  433 (513)
                      ....+...|++++|++.|++.++..  |.+.. .+..+..+|...|++++|.+.|++..+..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3445566677777777777666632  33444 56666666667777777777777665544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.95  E-value=0.058  Score=38.75  Aligned_cols=68  Identities=7%  Similarity=-0.036  Sum_probs=45.8

Q ss_pred             CchHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010320          400 VTTVRIMRCIVSSYFRCNA---VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       400 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  468 (513)
                      |.+...+..+..++...++   .++|..++++..+.... +......+...+.+.|++++|+..|+++.+.+
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            3455566666666654444   57788888877765533 45566666777777888888888888887654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.91  E-value=0.53  Score=38.06  Aligned_cols=102  Identities=11%  Similarity=0.101  Sum_probs=54.8

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010320          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ......|+++.|.++.+++     .+...|..|.......|+++-|.+.|.....          +..+.-.|.-.|+.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence            3345566666666665554     2455666666666666666666666665531          223334444455555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010320          244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM  286 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  286 (513)
                      .-.++-+.....|-      +|....++.-.|+++++.++|.+
T Consensus        78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            54444433333321      44444455556666666666544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.73  E-value=0.13  Score=45.25  Aligned_cols=110  Identities=6%  Similarity=-0.033  Sum_probs=76.2

Q ss_pred             CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc-CCHH
Q 010320          382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR-----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ-RRVE  455 (513)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~  455 (513)
                      ....|...+++.++....-.+...|..+...|..     -|+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            3566777777777744333356678888888888     489999999999988766433466677777788874 8899


Q ss_pred             HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320          456 EMESVLKEMENYKID--CSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       456 ~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      +|.+.+++.......  |+....+.+-+        ++|..+++++
T Consensus       258 ~a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~  295 (301)
T 3u64_A          258 GFDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHV  295 (301)
T ss_dssp             HHHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTH
T ss_pred             HHHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHh
Confidence            999999998887655  65444443332        4555555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.65  E-value=0.087  Score=38.73  Aligned_cols=64  Identities=19%  Similarity=0.070  Sum_probs=40.2

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhc-------cCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANK-------HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK  218 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  218 (513)
                      +...+-.+...+.+.|+++.|...|+...+.       +.....++..|..++.+.|++++|+..+++..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            4555556666666777777777777665543       122455666666666666666666666666664

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.50  E-value=0.78  Score=37.08  Aligned_cols=44  Identities=18%  Similarity=0.121  Sum_probs=20.8

Q ss_pred             HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010320          273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV  322 (513)
Q Consensus       273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~  322 (513)
                      +.|+++.|.++.+++      -+...|..|.......|+++-|.+.|...
T Consensus        17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            344455554444443      13444555555555555555555554443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.45  E-value=0.11  Score=40.91  Aligned_cols=79  Identities=11%  Similarity=-0.107  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhccCCCHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 010320          174 LAADLFAEAANKHLKTIGTYNALLGAYMYNG---LSDKCQSLFRDLKKEANISP--SIVTYNTLISVFGRLLLVDHMEAA  248 (513)
Q Consensus       174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~  248 (513)
                      .+.+-|.+....+.++..+...+..++++++   +.++++.+|++..+. . .|  +...+-.|.-++.+.|++++|.+.
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            3334444433333344444444444445544   333555555554443 1 12  122333333444455555555555


Q ss_pred             HHHHHH
Q 010320          249 FQEIKD  254 (513)
Q Consensus       249 ~~~m~~  254 (513)
                      ++.+.+
T Consensus        94 ~~~lL~   99 (152)
T 1pc2_A           94 VRGLLQ   99 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.31  E-value=0.12  Score=40.76  Aligned_cols=85  Identities=11%  Similarity=0.018  Sum_probs=63.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCcc--cHhhHHHHHHHHHhcCCHH
Q 010320          381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN---AVDKLANFVKRAESAGWRL--CRSLYHSKMVMYASQRRVE  455 (513)
Q Consensus       381 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~  455 (513)
                      +.+..+.+.|.+....+.  .+..+...+..++++++   +.+++..+++...+.. .|  ....+-.+.-+|.+.|+++
T Consensus        12 ~~l~~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~   88 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE   88 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence            456677777877766544  34555666888899988   6779999999988765 23  3455555677889999999


Q ss_pred             HHHHHHHHHHhCC
Q 010320          456 EMESVLKEMENYK  468 (513)
Q Consensus       456 ~A~~~~~~m~~~~  468 (513)
                      +|.+.++.+.+..
T Consensus        89 ~A~~y~~~lL~ie  101 (152)
T 1pc2_A           89 KALKYVRGLLQTE  101 (152)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999998754

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.27  E-value=0.15  Score=39.62  Aligned_cols=51  Identities=10%  Similarity=0.041  Sum_probs=22.1

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320          452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG  503 (513)
Q Consensus       452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  503 (513)
                      ++.++|.++|+.+....-+- ...|.....--.++|+.+.|.+++.+.+..+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            44444444444443321111 3344444444444555555555554444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.26  E-value=0.23  Score=43.74  Aligned_cols=94  Identities=15%  Similarity=0.085  Sum_probs=75.8

Q ss_pred             CHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc-C
Q 010320          171 NVDLAADLFAEAANKHLK--TIGTYNALLGAYMY-----NGLSDKCQSLFRDLKKEANISP--SIVTYNTLISVFGRL-L  240 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~-g  240 (513)
                      ....|+.++++..+..+.  +...|..|...|.+     .|+.++|.+.|++..+-   .|  +..++......+++. |
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcC
Confidence            457788888888887765  67789999999999     49999999999999874   56  378888888888885 9


Q ss_pred             ChhHHHHHHHHHHHCCCC--CCHHHHHHH
Q 010320          241 LVDHMEAAFQEIKDSNLS--PNVFTYNYL  267 (513)
Q Consensus       241 ~~~~A~~~~~~m~~~g~~--p~~~~~~~l  267 (513)
                      +.+.+.+.+++.......  |+....|.+
T Consensus       255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          255 NRAGFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            999999999999987766  665544443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.77  E-value=0.18  Score=37.03  Aligned_cols=26  Identities=12%  Similarity=0.048  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320          298 TYLLLLRGYAHSGNLPRMEKIYELVK  323 (513)
Q Consensus       298 t~~~ll~~~~~~g~~~~a~~~~~~~~  323 (513)
                      .+..+..++.+.|+++.|...+++..
T Consensus        48 i~~~L~~~~~~~g~~~~A~~~~~~al   73 (104)
T 2v5f_A           48 VLDYLSYAVYQQGDLDKALLLTKKLL   73 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            33333444444444444444444333

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.49  E-value=3.5  Score=39.37  Aligned_cols=55  Identities=15%  Similarity=0.086  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHHHHhcc-----CC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 010320          170 NNVDLAADLFAEAANKH-----LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP  224 (513)
Q Consensus       170 g~~~~a~~~~~~m~~~~-----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p  224 (513)
                      |+++.|++.+-.+.+..     .+ +......++..|...|+++...+.+..+.+..|..+
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk   90 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK   90 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH
Confidence            67888888776665431     22 456677888888888998888888877765545433

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.34  E-value=2.2  Score=44.48  Aligned_cols=260  Identities=8%  Similarity=-0.065  Sum_probs=120.3

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHcCC--CC-----CCHHHHHHHHHHH
Q 010320          236 FGRLLLVDHMEAAFQEIKDSNLSPN--VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP--VM-----PDTNTYLLLLRGY  306 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~-----p~~~t~~~ll~~~  306 (513)
                      ....|+.++++.+++.....+-..+  ...-..+.-+....|..+++..++.......  +.     +....-.++.-++
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4556677777777666553210112  2233333445556666566777666654321  00     1111122222222


Q ss_pred             HhcCC-hHHHHHHHHHHHhccCCCcHHHHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010320          307 AHSGN-LPRMEKIYELVKHHVDGKEFPLIR--AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL  383 (513)
Q Consensus       307 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  383 (513)
                      +..|. -+++.+.+..+..... .......  +|...+...|+-+-...++..+.+-...++. . ...+.-++...|+.
T Consensus       464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vr-R-~aalgLGll~~g~~  540 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNIT-R-GLAVGLALINYGRQ  540 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHH-H-HHHHHHHHHTTTCG
T ss_pred             HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHH-H-HHHHHHHhhhCCCh
Confidence            22332 2344555555444211 1111112  2233344556665555555555442211111 1 11233344456777


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010320          384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE  463 (513)
Q Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  463 (513)
                      +.+..+++.+............-.++.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.++++.
T Consensus       541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~  619 (963)
T 4ady_A          541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL  619 (963)
T ss_dssp             GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence            77777766665532111111112234456677778777777877776533 22333333333344445665556666655


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHH
Q 010320          464 MENYKIDCSKKTFWIMYYAYATCGQR-RKVNQVLGLMC  500 (513)
Q Consensus       464 m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~  500 (513)
                      +.+.+ .|...--..+.-+....|+. .+|.+++..+.
T Consensus       620 L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          620 LSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             GGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            55443 44444444455555555554 45666666654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.30  E-value=3  Score=43.46  Aligned_cols=258  Identities=9%  Similarity=-0.033  Sum_probs=139.9

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCC--C-----CCHHHHHHHHH
Q 010320          199 AYMYNGLSDKCQSLFRDLKKEANISPSIV--TYNTLISVFGRLLLVDHMEAAFQEIKDSNL--S-----PNVFTYNYLIA  269 (513)
Q Consensus       199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~~~~~li~  269 (513)
                      +....|+.++++.+++.-... +-..+..  .-..+.-+....|.-+++..++.+.....-  .     +....-.++--
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~-~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPG-SRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTT-SCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            355567777776666554421 1012322  223344455666666678887777654311  0     11222233333


Q ss_pred             HHHHccC-HHHHHHHHHHHHcCCCCCCHHH--HH--HHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH--HH
Q 010320          270 GYMTAWM-WGKVEEIYQMMKAGPVMPDTNT--YL--LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA--YS  342 (513)
Q Consensus       270 ~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t--~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~  342 (513)
                      +++-.|. -+++.+.+..+....   +..+  ..  .|...++..|+-+....++..+.+..   +..+...+..+  +.
T Consensus       462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll  535 (963)
T 4ady_A          462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI  535 (963)
T ss_dssp             HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence            3433443 246666666665532   2211  22  23333456678777778887766532   23333334444  44


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHH
Q 010320          343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL  422 (513)
Q Consensus       343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  422 (513)
                      ..|+.+.+..+.+.+.....+......-..+..+|+..|+.....+++..+....  ..+..-...+.-++...|+.+.+
T Consensus       536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~~e~v  613 (963)
T 4ady_A          536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRDYTTV  613 (963)
T ss_dssp             TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred             hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCCHHHH
Confidence            6788888888888887654332222111135567788889877777888777642  22343333333355556766667


Q ss_pred             HHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 010320          423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRV-EEMESVLKEMEN  466 (513)
Q Consensus       423 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~  466 (513)
                      .++++.+.+.+ .|.+..-.++.-+....|.. .+|..++..+..
T Consensus       614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            77776655544 45555545555555555443 577888888764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.85  E-value=1.9  Score=33.57  Aligned_cols=104  Identities=8%  Similarity=-0.018  Sum_probs=62.2

Q ss_pred             CCHHHHHHHHHHhcccCCH------HHHHHHHHHHHhccCCC-HhHHHHHHHH------HHHcCChHHHHHHHHHHHHhC
Q 010320          154 MTKEEYTKGIKFAGRINNV------DLAADLFAEAANKHLKT-IGTYNALLGA------YMYNGLSDKCQSLFRDLKKEA  220 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~~~~~-~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~~  220 (513)
                      -|..+|-..+..+-+.|+.      ++.+++|++....-+|+ -..|..-|..      +...++.++|.++|+.+... 
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~-   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN-   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence            3666666666666666776      67777777766644432 1111111111      12236778888888877653 


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010320          221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP  259 (513)
Q Consensus       221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  259 (513)
                      +-+- ...|......=.+.|++..|.+++......+.+|
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            2222 5566666666677788888888887777766553

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.80  E-value=1.5  Score=33.19  Aligned_cols=94  Identities=11%  Similarity=0.008  Sum_probs=61.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhcCCc-ccHhhHHHHHHHH
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK---LANFVKRAESAGWR-LCRSLYHSKMVMY  448 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~-p~~~~~~~li~~~  448 (513)
                      ++........+..+.+-|.+....+. +. ..+--.+..++.++.+...   ++.+++.+...+.+ -.....-.|.-++
T Consensus         7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s-~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~   84 (126)
T 1nzn_A            7 VLNELVSVEDLLKFEKKFQSEKAAGS-VS-KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   84 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSC-CC-HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHhccCC-Cc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            34444455566677777776666544 33 3334457778888876665   88888888765421 1333344566788


Q ss_pred             HhcCCHHHHHHHHHHHHhCC
Q 010320          449 ASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       449 ~~~g~~~~A~~~~~~m~~~~  468 (513)
                      .+.|++++|.+.++.+.+..
T Consensus        85 yklg~Y~~A~~~~~~lL~~e  104 (126)
T 1nzn_A           85 YRLKEYEKALKYVRGLLQTE  104 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhhHHHHHHHHHHHHHhC
Confidence            89999999999999988753

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=92.53  E-value=1.8e-05  Score=73.95  Aligned_cols=265  Identities=11%  Similarity=0.087  Sum_probs=154.5

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      .+.+|..|..+..+.+++.+|++.|-+.     .|+..|..+|.+..+.|++++-+..+.-.++.   .-+...=+.|+-
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~  124 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIF  124 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHH
Confidence            3446777777777777777765544221     26667778888888888888887777655543   234445567888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010320          235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR  314 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  314 (513)
                      +|++.+++.+-++++.       .||..-...+.+-|...|.++.|.-+|..+..         |.-|...+.+.|++..
T Consensus       125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~  188 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA  188 (624)
T ss_dssp             HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred             HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence            8888887666433321       25555566677777777877777777765543         2233334455555555


Q ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010320          315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA  393 (513)
Q Consensus       315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  393 (513)
                      |.+.-   .   ...+..||..+-.+|...+.+.-|.-+ +.+.   ...+...    .++..|-..|.+++.+.+++..
T Consensus       189 AVdaA---r---KAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhadeL~----elv~~YE~~G~f~ELIsLlEag  255 (624)
T 3lvg_A          189 AVDGA---R---KANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADELE----ELINYYQDRGYFEELITMLEAA  255 (624)
T ss_dssp             STTTT---T---TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSCCS----GGGSSSSTTCCCTTSTTTHHHH
T ss_pred             HHHHH---H---hcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHHHH----HHHHHHHhCCCHHHHHHHHHHH
Confidence            43321   1   223556677777777777766655433 2221   1122111    2566677778888877777766


Q ss_pred             HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCc------ccHhhHHHHHHHHHhcCCHHHHHH
Q 010320          394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE-SAGWR------LCRSLYHSKMVMYASQRRVEEMES  459 (513)
Q Consensus       394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~------p~~~~~~~li~~~~~~g~~~~A~~  459 (513)
                      +.  .......+|+-|.-.|++- +.++.++.++..- +.+++      -....|.-++-.|++-.++|.|..
T Consensus       256 lg--lErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          256 LG--LERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             TT--STTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             hC--CCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            53  4444567777777777665 3344444333211 11111      123446777777777777776643

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.33  E-value=0.58  Score=43.89  Aligned_cols=72  Identities=14%  Similarity=0.058  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 010320          192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD-----SNLSPNVFTYN  265 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~  265 (513)
                      +...++..+...|++++|+..+..+...  .+-+...|..+|.++.+.|+..+|++.|+++.+     .|+.|...+-.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            4556777788888888888888888764  355778888889999999999988888887653     48888876644

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.29  E-value=2.8  Score=31.61  Aligned_cols=85  Identities=14%  Similarity=0.075  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc----cchHHHHHHHHHhcCCHHHHH
Q 010320          312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR----PWLNVLLIRVYAKEDCLEEME  387 (513)
Q Consensus       312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~  387 (513)
                      +..+.+-|......|. ++..+-..+..++.+........+.+.++.+....+..    ...| .+.-++.+.|++++|.
T Consensus        17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY-~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF-YLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH-HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHH-HHHHHHHHhhhHHHHH
Confidence            3344444544444433 55555556777777777777766666666665554311    1113 3677778888888888


Q ss_pred             HHHHHHHhcCC
Q 010320          388 KSINDAFEHKT  398 (513)
Q Consensus       388 ~~~~~~~~~~~  398 (513)
                      +.++.+++..+
T Consensus        95 ~~~~~lL~~eP  105 (126)
T 1nzn_A           95 KYVRGLLQTEP  105 (126)
T ss_dssp             HHHHHHHHHCT
T ss_pred             HHHHHHHHhCC
Confidence            88888777443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.15  E-value=2.6  Score=45.85  Aligned_cols=125  Identities=10%  Similarity=0.038  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010320          264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC  339 (513)
Q Consensus       264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  339 (513)
                      |..++..+-+.|.++.+.++-+...+..-.-+    ...|..+.+++...|++++|...+-.+.....  -......|+.
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~  979 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN  979 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence            56666666666776666666555443211111    12456666777777777777666655544322  2333444555


Q ss_pred             HHHhcCC------------hhHHHHHHHHHH-hCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010320          340 AYSKCSV------------TDRIKKIEALMR-LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI  390 (513)
Q Consensus       340 ~~~~~g~------------~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  390 (513)
                      .+|..|.            .+..++++.... ........+.+|..|=..+...|++.+|-.++
T Consensus       980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B          980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp             HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence            4444433            233333332211 11111112223545555566667766655543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.71  E-value=4.5  Score=43.96  Aligned_cols=130  Identities=8%  Similarity=0.054  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010320          370 NVLLIRVYAKEDCLEEMEKSINDAFEHKT-SVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV  446 (513)
Q Consensus       370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  446 (513)
                      |.-++..+-+.+.++.+.++-+..++... ..+  ....|..+..++...|++++|...+-.+.....+  ......||.
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~  979 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN  979 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence            44567777777888888777666554322 121  1235777888888888888888888776554433  344566666


Q ss_pred             HHHhcCCHH------------HHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCCHhHHHHH-HHHHHH
Q 010320          447 MYASQRRVE------------EMESVLKEMEN-Y-KIDCSKKTFWIMYYAYATCGQRRKVNQV-LGLMCK  501 (513)
Q Consensus       447 ~~~~~g~~~------------~A~~~~~~m~~-~-~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~  501 (513)
                      .+|..|..+            +..+++..-.+ . .+...+.-|..|-.-+...|++..|..+ |+...+
T Consensus       980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B          980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp             HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence            666555544            33444432211 1 1111223456666667777887665554 555543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.87  E-value=0.9  Score=42.58  Aligned_cols=68  Identities=9%  Similarity=0.119  Sum_probs=34.6

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 010320          406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN-----YKIDCSKK  474 (513)
Q Consensus       406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~  474 (513)
                      ...++..+...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|.+.|+.+.+     .|+.|+..
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            3344445555555555555555554332 22444555555555555555555555554433     25555544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.81  E-value=3.1  Score=29.71  Aligned_cols=62  Identities=15%  Similarity=0.150  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010320          137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      ..++-..|...-+..+.|++.+..+.+++|-|.+++..|.++|+-++.+-.....+|..+++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq   87 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence            33444444444455567777777777777777777777777777776543333345555554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.78  E-value=2.6  Score=42.90  Aligned_cols=54  Identities=9%  Similarity=-0.047  Sum_probs=44.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320          445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       445 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                      .+.+...|+++-|+++-++....- +-+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            345567899999999999887653 445789999999999999999999888876

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.46  E-value=13  Score=34.48  Aligned_cols=93  Identities=13%  Similarity=0.047  Sum_probs=54.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcccHhhHH---
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA--GWRLCRSLYH---  442 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~---  442 (513)
                      -++..|...|++.+|.+++.++.+.-    ....-..++..-+..|...+++.++...+......  .+.+++.+-.   
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            46777778888888877777666521    11123445556667777788888888777766422  1212222211   


Q ss_pred             -HHHHHHH-hcCCHHHHHHHHHHH
Q 010320          443 -SKMVMYA-SQRRVEEMESVLKEM  464 (513)
Q Consensus       443 -~li~~~~-~~g~~~~A~~~~~~m  464 (513)
                       +-...+. ..++|..|...|-+.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHH
Confidence             1122334 677787777766554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.13  E-value=2  Score=43.84  Aligned_cols=60  Identities=7%  Similarity=-0.063  Sum_probs=44.6

Q ss_pred             cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHhHHHHHHHH
Q 010320          437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG---------QRRKVNQVLGL  498 (513)
Q Consensus       437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~  498 (513)
                      +..-|..|.....+.+++++|.+.|+.....  +-+...+.-|+..|.+.+         +.+..+.+.-+
T Consensus       612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ik  680 (754)
T 4gns_B          612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIK  680 (754)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHH
Confidence            3334888888888889999999999888864  467888888999998876         55555554433

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.58  E-value=3.2  Score=29.70  Aligned_cols=62  Identities=13%  Similarity=0.126  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010320          277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC  339 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  339 (513)
                      .-++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+-++.... ....+|..+++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq   87 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence            335556666666667777777777778888888888778777777665422 22334554443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=88.02  E-value=23  Score=35.32  Aligned_cols=116  Identities=9%  Similarity=0.025  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHH
Q 010320          382 CLEEMEKSINDAFEHKTSVTT--VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES  459 (513)
Q Consensus       382 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  459 (513)
                      +.+.|...+..........+.  ......+.......+...++...+.......  .+.......+....+.|+++.|..
T Consensus       229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~  306 (618)
T 1qsa_A          229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT  306 (618)
T ss_dssp             CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence            567777777666543322111  1112222223333342344444555433322  222233344444456677777777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320          460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC  500 (513)
Q Consensus       460 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  500 (513)
                      .|+.|..... ....-.--+.+++...|+.++|..+|+++.
T Consensus       307 ~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          307 WLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             HHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            7777765321 122223345556677777777777777654

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=87.97  E-value=5.3  Score=30.31  Aligned_cols=62  Identities=15%  Similarity=0.150  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010320          137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      ..++-..|...-+..+.|++.+....+++|-+.+++..|.++|+-++.+-.+...+|..+++
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq  130 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence            34444445444455577788888888888888888888888888777653333445655554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=84.82  E-value=4.1  Score=32.37  Aligned_cols=114  Identities=5%  Similarity=-0.151  Sum_probs=61.2

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhcc--CCC-------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHH
Q 010320          161 KGIKFAGRINNVDLAADLFAEAANKH--LKT-------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYN  230 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~  230 (513)
                      .-+..+...|.++.|+-+.+.+....  .++       ..++..+..++...|++.+|...|++..+....-+.. .++.
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            34666778888888887777654321  112       2366777788899999999999999864431211211 1111


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 010320          231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM  287 (513)
Q Consensus       231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  287 (513)
                      .+-    .......         ......+...---+-.||.+.|++++|+.+++.+
T Consensus       105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            110    0000000         0011223344344666777777888887777664

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=83.68  E-value=0.015  Score=54.93  Aligned_cols=185  Identities=10%  Similarity=0.079  Sum_probs=118.9

Q ss_pred             CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS  234 (513)
Q Consensus       155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~  234 (513)
                      |+..|..+|.+..+.|.+++-...+...+ ...++..+=+.|+-+|++.++..+-.+++    .    .||..-...+.+
T Consensus        82 Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~~ke~~IDteLi~ayAk~~rL~elEefl----~----~~N~A~iq~VGD  152 (624)
T 3lvg_A           82 DPSSYMEVVQAANTSGNWEELVKYLQMAR-KKARESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGD  152 (624)
T ss_dssp             CCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TTCCSTTTTHHHHHHHHTSCSSSTTTSTT----S----CCSSSCTHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhcccccHHHHHHHHHhhCcHHHHHHHH----c----CCCcccHHHHHH
Confidence            56667777888778888777777666443 33445556677788888877765543322    1    356555666677


Q ss_pred             HHHhcCChhHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010320          235 VFGRLLLVDHMEAAFQEIKDSN--------------------LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP  294 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  294 (513)
                      -|...|.++.|.-+|..+....                    -.-++.||-.+-.+|...+++.-|.-.--.+.-.   |
T Consensus       153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a  229 (624)
T 3lvg_A          153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A  229 (624)
T ss_dssp             HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred             HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence            7777777777766665543211                    1236678888888898888887765544444321   1


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010320          295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA  355 (513)
Q Consensus       295 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  355 (513)
                      |  -...++.-|-..|-+++-+.+++.-... -.....+|+.|.-.|+|-. .++..+-++
T Consensus       230 d--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~-PeKlmEHlk  286 (624)
T 3lvg_A          230 D--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLE  286 (624)
T ss_dssp             S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSC-TTHHHHHHT
T ss_pred             H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence            1  1234556678888898888888876642 2357888999999999874 444333333

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=83.59  E-value=11  Score=28.59  Aligned_cols=61  Identities=15%  Similarity=0.183  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010320          278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC  339 (513)
Q Consensus       278 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  339 (513)
                      -+..+-++.+....+.|+.......+++|-+.+++..|.++|+-++... .+...+|..+++
T Consensus        70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq  130 (152)
T 2y69_E           70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence            3555666666677788898899999999999999999999988877653 233445665543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=81.41  E-value=16  Score=27.80  Aligned_cols=60  Identities=2%  Similarity=-0.168  Sum_probs=40.7

Q ss_pred             HHHHHHHhcCc---HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320          408 CIVSSYFRCNA---VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY  467 (513)
Q Consensus       408 ~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  467 (513)
                      ....++.++.+   ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus        45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            35556666654   4457778887776553223444556667888888888888888888764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.31  E-value=38  Score=32.17  Aligned_cols=95  Identities=9%  Similarity=0.069  Sum_probs=71.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCc---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCccc--HhhH
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHK-TSVT---TVRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLC--RSLY  441 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~--~~~~  441 (513)
                      .|...|...|++.+|.+++.++...- ...+   -...+...++.|...+++..|..+++++..    ....|+  ...|
T Consensus       142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~  221 (445)
T 4b4t_P          142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY  221 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence            57888999999999999998876421 1111   245677788899999999999999998742    222232  3446


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          442 HSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       442 ~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      ...+..+...+++.+|...|.+..+
T Consensus       222 ~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          222 NLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            7778888899999999988887754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.50  E-value=39  Score=31.85  Aligned_cols=95  Identities=17%  Similarity=0.098  Sum_probs=64.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---cCCcccHhh--HHHHH
Q 010320          372 LLIRVYAKEDCLEEMEKSINDAFEHKTS-VTTVRIMRCIVSSYFRCNAVDKLANFVKRAES---AGWRLCRSL--YHSKM  445 (513)
Q Consensus       372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~--~~~li  445 (513)
                      .+...|.+.|++++|.+.+.++...... .....++-.+++.+...+++..+...+.++..   .+-.++...  ...-.
T Consensus       136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g  215 (429)
T 4b4t_R          136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG  215 (429)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence            5888889999999999999888764222 23456677888889999999999998888743   232232221  11111


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh
Q 010320          446 VMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       446 ~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      ..+...+++.+|...|-+...
T Consensus       216 l~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          216 IHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHHHHHHhc
Confidence            223467889999888877654

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=80.41  E-value=13  Score=30.60  Aligned_cols=53  Identities=11%  Similarity=-0.006  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010320          419 VDKLANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC  471 (513)
Q Consensus       419 ~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  471 (513)
                      ..++.++|..|...|+.-. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus        95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P  148 (202)
T 3esl_A           95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP  148 (202)
T ss_dssp             HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            4455555555544443322 2334444445555555555555555555554444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=80.23  E-value=17  Score=27.57  Aligned_cols=69  Identities=13%  Similarity=0.015  Sum_probs=36.6

Q ss_pred             CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc---ccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010320          327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY---RPWLNVLLIRVYAKEDCLEEMEKSINDAFEH  396 (513)
Q Consensus       327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  396 (513)
                      ..|+..+--.+..++.+..+.+...+.+.++.++-..+.   ....| .+.-++.+.|++++|.+..+.+++.
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LY-yLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLY-YLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHH-HHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            334555545555666666655555555544444332221   11112 3666667777777777777766663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	513
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.83
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.28
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.23
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.19
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.16
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.07
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.06
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.06
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.01
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.97
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.92
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.48
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.46
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.42
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.37
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.3
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.29
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.24
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.21
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.16
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.14
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.06
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.05
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.98
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.91
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.9
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.82
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.78
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.7
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.69
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.67
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.65
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.61
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.54
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.53
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.52
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.5
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.49
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.49
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.45
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.42
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.4
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.35
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.23
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.1
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.8
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.31
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.28
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.12
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.93
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.97
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.15
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	91.03
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	90.43
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	88.87
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	88.73
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	85.6

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.4e-18  Score=162.70  Aligned_cols=357  Identities=10%  Similarity=-0.063  Sum_probs=279.5

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++.+.|.+.++.+.+.    .|-+...+..+..+|.+.|++++|.+.|++..+..+.+..+|..+...|.+.|++++|+
T Consensus        12 ~G~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~   87 (388)
T d1w3ba_          12 AGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI   87 (388)
T ss_dssp             HTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccc
Confidence            46888999999888764    24478888999999999999999999999998887778899999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320          211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      +.+....+.  ...+...+..........+....+............ ................+....+...+.+....
T Consensus        88 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T d1w3ba_          88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccccc--cccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhcc
Confidence            999999875  345556666666666666777777666666655433 34455555666667777888888887777663


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010320          291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN  370 (513)
Q Consensus       291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  370 (513)
                      . .-+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++............+  
T Consensus       165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--  240 (388)
T d1w3ba_         165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH--  240 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH--
T ss_pred             C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH--
Confidence            3 2246778888888889999999999998887753 34677788888899999999988888776666555444333  


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320          371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS  450 (513)
Q Consensus       371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  450 (513)
                      ..+...+...|++++|++.|++.++.  .|.+..++..+...+...|++++|.+.++...... +.+...+..+...+.+
T Consensus       241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHH
Confidence            24778888899999999999988874  45566778888889999999999999998887654 3466778888888999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       451 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      .|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|.+.|++..+.
T Consensus       318 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999988754 445778888899999999999999999988754

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2e-16  Score=149.26  Aligned_cols=342  Identities=11%  Similarity=0.024  Sum_probs=282.7

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320          131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ  210 (513)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  210 (513)
                      .++++.|...++...+..    |-+..+|..+..+|.+.|++++|.+.++...+....+...+..........+....+.
T Consensus        46 ~~~~~~A~~~~~~al~~~----p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (388)
T d1w3ba_          46 CRRLDRSAHFSTLAIKQN----PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV  121 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHH
T ss_pred             cCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccc
Confidence            679999999999887653    4478899999999999999999999999999887767777777777777778888877


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320          211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG  290 (513)
Q Consensus       211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  290 (513)
                      .........  ...+..............+....+...+.+...... -+...+..+...+...|++++|...+++..+.
T Consensus       122 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  198 (388)
T d1w3ba_         122 QAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL  198 (388)
T ss_dssp             HHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             ccccccccc--ccccccccccccccccccchhhhhHHHHHHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHh
Confidence            777777654  345556666677778888889999988888876543 36778888889999999999999999998774


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 010320          291 PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL  369 (513)
Q Consensus       291 g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  369 (513)
                        .| +...|..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|...++...++.+.....+.
T Consensus       199 --~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  275 (388)
T d1w3ba_         199 --DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC  275 (388)
T ss_dssp             --CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred             --CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence              34 47789999999999999999999999988864 346677888999999999999998888877777666554443


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHH
Q 010320          370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA  449 (513)
Q Consensus       370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  449 (513)
                        .+...+...|++++|++.++......  +.+...+..+...+...|++++|.+.+++..+.... +..++..+...|.
T Consensus       276 --~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~  350 (388)
T d1w3ba_         276 --NLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQ  350 (388)
T ss_dssp             --HHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred             --HHHHHHHHcCCHHHHHHHHHhhhccC--CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence              58889999999999999999988753  445667888999999999999999999998765422 5677888999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320          450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ  488 (513)
Q Consensus       450 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  488 (513)
                      +.|++++|...|++..+.+ +-+...|..+..+|.+.||
T Consensus       351 ~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         351 QQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            9999999999999998764 3457789999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-12  Score=118.92  Aligned_cols=273  Identities=10%  Similarity=-0.037  Sum_probs=176.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010320          195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      -....+.+.|++++|+..|++..+.  -+-+..+|..+..++...|+++.|...|++..+.... +...|..+...|...
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccc
Confidence            4566788899999999999998864  2445778888999999999999999999998875432 677888888899999


Q ss_pred             cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010320          275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE  354 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  354 (513)
                      |++++|.+.+++....  .|+...................                   ....+..+...+...++.+.+
T Consensus       101 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~a~~~~  159 (323)
T d1fcha_         101 SLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGP-------------------SKRILGSLLSDSLFLEVKELF  159 (323)
T ss_dssp             TCHHHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHh--ccchHHHHHhhhhhhhhccccc-------------------chhhHHHHHHhhHHHHHHHHH
Confidence            9999999999888763  2321111000000000000000                   000011111222223333333


Q ss_pred             HHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010320          355 ALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW  434 (513)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  434 (513)
                      ....+..+....+..+..+...+...|++++|+..|++.+...  |.+..+|..+...|...|++++|.+.++++.+...
T Consensus       160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            3333333333333333346677778888888888888877743  44566788888888889999999988888876542


Q ss_pred             cccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010320          435 RLCRSLYHSKMVMYASQRRVEEMESVLKEMENY----------KIDCSKKTFWIMYYAYATCGQRRKVNQ  494 (513)
Q Consensus       435 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~p~~~~~~~li~~~~~~g~~~~A~~  494 (513)
                       -+...|..+..+|.+.|++++|+..|++..+.          ........|..+-.++...|+.+.+..
T Consensus       238 -~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         238 -GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             -ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence             24667778888888899999999888877652          112233456667777777777765543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.8e-12  Score=116.58  Aligned_cols=229  Identities=10%  Similarity=-0.002  Sum_probs=151.6

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~  241 (513)
                      ....+.+.|++++|.+.|++..+..+.+..+|..+..+|...|++++|+..|++..+.  .+-+...|..+...+...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--cccccccccccccccccccc
Confidence            4555678889999999999888877778888888888899999999999999888764  23456778888888888999


Q ss_pred             hhHHHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHH
Q 010320          242 VDHMEAAFQEIKDSNLSP--------------NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMPDTNTYLLLLRGY  306 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~  306 (513)
                      +++|.+.+++........              +.......+..+...+.+.+|.+.|++..+. .-..+...+..+...+
T Consensus       103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~  182 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF  182 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            999998888887643210              0011111223344455667777777766542 1233566677777777


Q ss_pred             HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHH
Q 010320          307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM  386 (513)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  386 (513)
                      ...|++++|...++...+.. +.+...|..+...|.+.|++++|.+.++...++.+.....+.  .+..+|.+.|++++|
T Consensus       183 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         183 NLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY--NLGISCINLGAHREA  259 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHHTCHHHH
T ss_pred             HHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH--HHHHHHHHCCCHHHH
Confidence            77788888888777776652 234556666666666666666666665555554444333332  355666666666666


Q ss_pred             HHHHHHHHh
Q 010320          387 EKSINDAFE  395 (513)
Q Consensus       387 ~~~~~~~~~  395 (513)
                      ++.|++.++
T Consensus       260 ~~~~~~al~  268 (323)
T d1fcha_         260 VEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.4e-09  Score=96.86  Aligned_cols=205  Identities=7%  Similarity=-0.043  Sum_probs=117.8

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320          158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      +|+.+-..+.+.+.+++|+++++++.+..+.+..+|+....++...| ++++|++.++...+.  -+-+..+|+.+...+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHH
Confidence            34444445556666666766666666665556666666666666654 366666666666553  133456666666666


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-----
Q 010320          237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN-----  311 (513)
Q Consensus       237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----  311 (513)
                      .+.|++++|+..++++.+... -+...|+.+...+.+.|++++|++.|+++.+... -+...|+.+...+.+.+.     
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhh
Confidence            666667777776666666433 2566666666666666667777776666666321 145556555555555444     


Q ss_pred             -hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc
Q 010320          312 -LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW  368 (513)
Q Consensus       312 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  368 (513)
                       +++|.+.+....+.. +.+...|+-+...+...| .+++.+.++.+.++......++
T Consensus       201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~  256 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPY  256 (315)
T ss_dssp             HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHH
T ss_pred             hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHH
Confidence             455666666655542 335555555554444333 3445555554444444333333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.1e-08  Score=93.86  Aligned_cols=164  Identities=11%  Similarity=-0.016  Sum_probs=102.4

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccCCC-----HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 010320          161 KGIKFAGRINNVDLAADLFAEAANKHLKT-----IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNT  231 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~  231 (513)
                      .....+...|++++|.+++++..+..+.+     ...++.+...|...|++++|+..|++..+...-.++    ..++..
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            34455667888888888888877654432     345667777788888888888888876542111122    234556


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHH----CCCC--CC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCCCHHHHH
Q 010320          232 LISVFGRLLLVDHMEAAFQEIKD----SNLS--PN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMPDTNTYL  300 (513)
Q Consensus       232 li~~~~~~g~~~~A~~~~~~m~~----~g~~--p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~  300 (513)
                      +...+...|++..+...+.+...    .+..  +. ...+..+...+...|+++.+...++.....    +......++.
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  176 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  176 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            66677777888888777766543    1111  11 234455566777778888888777776542    2223345566


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q 010320          301 LLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       301 ~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      .+...+...++...+...+.....
T Consensus       177 ~~~~~~~~~~~~~~a~~~~~~a~~  200 (366)
T d1hz4a_         177 MLIQCSLARGDLDNARSQLNRLEN  200 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHH
Confidence            666667777777777776665443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=2e-08  Score=92.17  Aligned_cols=301  Identities=8%  Similarity=-0.056  Sum_probs=208.3

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC---
Q 010320          191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS------IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN---  260 (513)
Q Consensus       191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---  260 (513)
                      .........+...|++++|+++|++....   .|+      ...++.+..++...|++++|+..|++..+... .++   
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~---~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEE---LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            34444566788999999999999998864   233      34677888999999999999999998875211 112   


Q ss_pred             -HHHHHHHHHHHHHccCHHHHHHHHHHHHc----CCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccC----C
Q 010320          261 -VFTYNYLIAGYMTAWMWGKVEEIYQMMKA----GPVM--PD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD----G  328 (513)
Q Consensus       261 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~  328 (513)
                       ...+..+...+...|++..+...+.+...    .+..  +. ...+..+...+...|+++.+...+........    .
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  169 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  169 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence             34566677788899999999998887653    2222  12 34566777889999999999999988776322    2


Q ss_pred             CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-cc----chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Cc
Q 010320          329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY-RP----WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS--VT  401 (513)
Q Consensus       329 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~  401 (513)
                      .....+..+...+...++...+...+........... ..    .....+...+...|++++|...+.+.......  +.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  249 (366)
T d1hz4a_         170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF  249 (366)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence            2344556666777778887776665544333322211 11    11234566778889999999999887654322  22


Q ss_pred             hHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 010320          402 TVRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENY----KIDC-  471 (513)
Q Consensus       402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-  471 (513)
                      ....+..+...+...|++++|.+.++.+..    .+..|+ ...+..+...|.+.|++++|.+.+++..+.    |... 
T Consensus       250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~  329 (366)
T d1hz4a_         250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH  329 (366)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHH
Confidence            344566778899999999999999998753    344444 456777888999999999999999876542    3211 


Q ss_pred             ---CHHHHHHHHHHHHhcCCHhHHHH
Q 010320          472 ---SKKTFWIMYYAYATCGQRRKVNQ  494 (513)
Q Consensus       472 ---~~~~~~~li~~~~~~g~~~~A~~  494 (513)
                         ....+..++..+...++.+++.+
T Consensus       330 ~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         330 FVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCChHHHH
Confidence               22345556677777787776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.9e-08  Score=90.76  Aligned_cols=152  Identities=7%  Similarity=-0.090  Sum_probs=125.2

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLI  268 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li  268 (513)
                      ...|+.+...+.+.+..++|+++++++.+.  -+-+...|+....++...| ++++|+..+++..+.... +..+|+.+.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHh
Confidence            557778888888999999999999999975  2445668888888888876 589999999999886553 789999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC
Q 010320          269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV  346 (513)
Q Consensus       269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  346 (513)
                      ..+.+.|++++|++.++++.+.. .-+...|..+...+...|++++|++.++.+.+.. +.+...|+.+...+.+.+.
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccc
Confidence            99999999999999999998843 2258999999999999999999999999999874 3466677766655555543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=4.9e-08  Score=87.89  Aligned_cols=187  Identities=10%  Similarity=0.051  Sum_probs=94.4

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010320          242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL  321 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  321 (513)
                      .+.|..+|++..+...+.+...|...+....+.|++++|..+|+++.+.........|...+..+.+.|+++.|.++|+.
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            34555556555544333344555555555556666666666666655532222234455555556566666666666665


Q ss_pred             HHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010320          322 VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT  401 (513)
Q Consensus       322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  401 (513)
                      +.+.+.. +...|.....                                   .-+...|+.+.|..+|+.++..  .|.
T Consensus       160 al~~~~~-~~~~~~~~a~-----------------------------------~e~~~~~~~~~a~~i~e~~l~~--~p~  201 (308)
T d2onda1         160 AREDART-RHHVYVTAAL-----------------------------------MEYYCSKDKSVAFKIFELGLKK--YGD  201 (308)
T ss_dssp             HHTSTTC-CTHHHHHHHH-----------------------------------HHHHTSCCHHHHHHHHHHHHHH--HTT
T ss_pred             HHHhCCC-cHHHHHHHHH-----------------------------------HHHHhccCHHHHHHHHHHHHHh--hhh
Confidence            5543221 1111111110                                   0112234455555555555553  233


Q ss_pred             hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Cccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320          402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAG-WRLC--RSLYHSKMVMYASQRRVEEMESVLKEMEN  466 (513)
Q Consensus       402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  466 (513)
                      +...|...++.+...|+.+.|..+|++..... ..|.  ...|...+..-...|+.+.+.++++++.+
T Consensus       202 ~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34556666666666666666666666654432 2222  23455555555566666666666665544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=1.1e-08  Score=93.54  Aligned_cols=272  Identities=6%  Similarity=-0.084  Sum_probs=158.8

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHH----------HHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAY----------MYNGLSDKCQSLFRDLKKEANISPSIVTYNT  231 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~----------~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~  231 (513)
                      ++....+....++|+++++...+..+.+...|+..-..+          ...|++++|+.+|+...+.  .+-+...|..
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~~~~~  112 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHH  112 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence            333333444457788888877776655666665433332          2234467788888887764  2445666666


Q ss_pred             HHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010320          232 LISVFGRLLL--VDHMEAAFQEIKDSNLSPNVFTYNYLI-AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH  308 (513)
Q Consensus       232 li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~  308 (513)
                      +..++...+.  +++|...++++.+... ++...|...+ ..+...|.+++|+..+++..+... -+...|..+...+.+
T Consensus       113 ~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~  190 (334)
T d1dcea1         113 RCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ  190 (334)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred             hhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            6666666553  6778888888776533 3455554443 555567788888888887777542 257777777788888


Q ss_pred             cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHH
Q 010320          309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEK  388 (513)
Q Consensus       309 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  388 (513)
                      .|++++|...+....+..  |.   ...+...+...+..+.+...+.............+.  .+...+...++.++|..
T Consensus       191 ~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~--~l~~~~~~~~~~~~a~~  263 (334)
T d1dcea1         191 LHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCE--LSVEKSTVLQSELESCK  263 (334)
T ss_dssp             HSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCC--CCHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHH--HHHHHHHHHhhHHHHHH
Confidence            887776655544333321  00   111222333444444544444444444443333332  35556666677777777


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc-HhhHHHHHHHH
Q 010320          389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC-RSLYHSKMVMY  448 (513)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~  448 (513)
                      .+.+...  ..|.+..++..+...+...|+.++|.+.++.+.+..  |+ ...|..+...+
T Consensus       264 ~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~  320 (334)
T d1dcea1         264 ELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKF  320 (334)
T ss_dssp             HHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHH
T ss_pred             HHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHH
Confidence            7776665  334456666777777777777777777777776543  32 33444443333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=8e-08  Score=86.44  Aligned_cols=148  Identities=11%  Similarity=0.061  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 010320          206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ  285 (513)
Q Consensus       206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~  285 (513)
                      .++|..+|++..+. ..+-+...|...+....+.|+++.|..+|+++.+........+|...+..+.+.|++++|.++|+
T Consensus        80 ~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          80 SDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            46666677766642 23334455666666667777777777777777654433334567777777777777777777777


Q ss_pred             HHHcCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010320          286 MMKAGPVMPDTNTYLLLLRG-YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL  356 (513)
Q Consensus       286 ~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  356 (513)
                      .+.+.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..+++.
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~  228 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFER  228 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            76664322 22333332222 23356677777777776664 233455566555555555555555444443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1.1e-08  Score=89.61  Aligned_cols=116  Identities=8%  Similarity=-0.103  Sum_probs=59.3

Q ss_pred             CHHHHHHHHHHHHhccCC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010320          171 NVDLAADLFAEAANKHLK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME  246 (513)
Q Consensus       171 ~~~~a~~~~~~m~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~  246 (513)
                      +.+.++.-+++.......    ...+|..+...|.+.|++++|++.|++..+.  -+-+..+|+.+..++.+.|++++|+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhh
Confidence            344444455555443211    2344555555566666666666666665543  1233455555555555555555555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      ..|++..+.... +..+|..+..+|...|++++|.+.|++..+
T Consensus        92 ~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  133 (259)
T d1xnfa_          92 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQ  133 (259)
T ss_dssp             HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            555555553321 334455555555555555555555555544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=2.7e-08  Score=87.01  Aligned_cols=137  Identities=9%  Similarity=-0.076  Sum_probs=97.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHH
Q 010320          205 LSDKCQSLFRDLKKEANISPS--IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE  282 (513)
Q Consensus       205 ~~~~A~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  282 (513)
                      +.+.++.-+++...+....++  ..+|..+..+|.+.|++++|+..|++..+... -+..+|+.+..+|.+.|++++|++
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhh
Confidence            456777778887754222221  23677778888889999999999998887644 367888888889999999999999


Q ss_pred             HHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010320          283 IYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS  345 (513)
Q Consensus       283 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  345 (513)
                      .|++..+.  .|+ ..++..+..++...|++++|.+.|+...+... .+......+...+.+.+
T Consensus        93 ~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_          93 AFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred             hhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhh
Confidence            99888873  343 66788888888888999999999988877632 33433333333334444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=5.3e-09  Score=95.68  Aligned_cols=275  Identities=8%  Similarity=-0.063  Sum_probs=188.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH----------HhcCChhHHHHHHHHHHHCCCCCCH
Q 010320          193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYNTLISVF----------GRLLLVDHMEAAFQEIKDSNLSPNV  261 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~----------~~~g~~~~A~~~~~~m~~~g~~p~~  261 (513)
                      +..++...-..+..++|++++++..+.   .|+. ..|+..-..+          ...|.+++|+.+++...+... -+.
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~  107 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSY  107 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcH
Confidence            344444444444568999999999875   4664 4454433332          233457899999999987654 377


Q ss_pred             HHHHHHHHHHHHcc--CHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010320          262 FTYNYLIAGYMTAW--MWGKVEEIYQMMKAGPVMPDTNTYLL-LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI  338 (513)
Q Consensus       262 ~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  338 (513)
                      ..|..+..++...+  ++++|...++++.+.. .++...+.. ....+...+..++|...++.+.+.. +.+...|+.+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~  185 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRS  185 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHH
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence            88888888877766  4889999999988743 234555544 4467777899999999999988874 35788888899


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010320          339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA  418 (513)
Q Consensus       339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  418 (513)
                      ..+.+.|++++|...+.....+     .+. ...+...+...+..+++...+........  +....+..+...+...|+
T Consensus       186 ~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~~--~~~~~~~~l~~~~~~~~~  257 (334)
T d1dcea1         186 CLLPQLHPQPDSGPQGRLPENV-----LLK-ELELVQNAFFTDPNDQSAWFYHRWLLGRA--EPLFRCELSVEKSTVLQS  257 (334)
T ss_dssp             HHHHHHSCCCCSSSCCSSCHHH-----HHH-HHHHHHHHHHHCSSCSHHHHHHHHHHSCC--CCSSSCCCCHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHhHHh-----HHH-HHHHHHHHHHhcchhHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHhh
Confidence            9999988877553222111110     011 11244455666777788888877776433  333345566777888899


Q ss_pred             HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 010320          419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS-KKTFWIMYYAYA  484 (513)
Q Consensus       419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~  484 (513)
                      .++|.+.+.+...... -+...+..+...|...|++++|.+.++...+.+  |+ ..-|..|...+.
T Consensus       258 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~~  321 (334)
T d1dcea1         258 ELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHHh
Confidence            9999999998876553 256778888899999999999999999998865  54 445555555444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=6.5e-06  Score=72.80  Aligned_cols=57  Identities=12%  Similarity=0.025  Sum_probs=40.3

Q ss_pred             HHHHHHccCHHHHHHHHHHHHcC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010320          268 IAGYMTAWMWGKVEEIYQMMKAG----PVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       268 i~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      ...|...|++++|.+.|.+..+-    +-.++ ..+|..+..+|.+.|++++|.+.++...+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~  105 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence            45677788888888888776541    21222 46778888888888888888888876554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=6.4e-06  Score=67.67  Aligned_cols=127  Identities=9%  Similarity=-0.050  Sum_probs=81.7

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010320          197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM  276 (513)
Q Consensus       197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  276 (513)
                      ...+...|++++|++.|.++.     .|+..+|..+..++...|++++|++.|++.++... -+...|..+..+|.+.|+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhcc
Confidence            344566677777777766432     35666666677777777777777777777766543 256666667777777777


Q ss_pred             HHHHHHHHHHHHcC------------CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010320          277 WGKVEEIYQMMKAG------------PV--MPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK  329 (513)
Q Consensus       277 ~~~a~~~~~~m~~~------------g~--~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  329 (513)
                      +++|++.|++....            |.  ..+ ..++..+..++.+.|++++|.+.++...+....+
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            77777777665431            11  111 3455667777888888888888888777654433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=7.4e-06  Score=72.41  Aligned_cols=167  Identities=9%  Similarity=-0.031  Sum_probs=106.7

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHhccC--C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHH
Q 010320          159 YTKGIKFAGRINNVDLAADLFAEAANKHL--K----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVT  228 (513)
Q Consensus       159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~  228 (513)
                      |......|...|++++|.+.|++..+...  .    -..+|+.+..+|.+.|++++|++.+++......-..+    ..+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            34455667788889999888888765321  1    2457888888888889999988888865432100112    344


Q ss_pred             HHHHHHHHH-hcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC-----CCH-
Q 010320          229 YNTLISVFG-RLLLVDHMEAAFQEIKDS----NLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM-----PDT-  296 (513)
Q Consensus       229 ~~~li~~~~-~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~-  296 (513)
                      +..+...|- ..|+++.|++.|++..+.    +-.+ -..+|..+...+...|++++|+++|++.......     ... 
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            555666664 458888888888776531    1111 1345677778888888888888888887653211     111 


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320          297 NTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      ..+...+..+...|+++.|...++...+.
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            22334445566778888888888777664

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8.2e-06  Score=64.74  Aligned_cols=93  Identities=9%  Similarity=-0.072  Sum_probs=64.2

Q ss_pred             HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320          162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL  241 (513)
Q Consensus       162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~  241 (513)
                      ....|.+.|++++|+..|++..+..+.+...|..+..+|...|++++|+..|++..+.  -+-+..+|..+..++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHHcCC
Confidence            3445567777777777777777766657777777777777777777777777777653  13345677777777777777


Q ss_pred             hhHHHHHHHHHHHCC
Q 010320          242 VDHMEAAFQEIKDSN  256 (513)
Q Consensus       242 ~~~A~~~~~~m~~~g  256 (513)
                      +++|...|++.....
T Consensus        94 ~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          94 FRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcC
Confidence            777777777776643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.2e-05  Score=59.99  Aligned_cols=91  Identities=15%  Similarity=0.016  Sum_probs=55.7

Q ss_pred             HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010320          163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV  242 (513)
Q Consensus       163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~  242 (513)
                      ...+.+.|++++|+.+|++..+..+.+...|..+..+|...|++++|+..|+...+.  -+.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHHccCH
Confidence            344556666666666666666655556666666666666666666666666666653  234555666666666666666


Q ss_pred             hHHHHHHHHHHHC
Q 010320          243 DHMEAAFQEIKDS  255 (513)
Q Consensus       243 ~~A~~~~~~m~~~  255 (513)
                      ++|+..|++..+.
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666666653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.5e-05  Score=65.43  Aligned_cols=125  Identities=13%  Similarity=-0.016  Sum_probs=83.2

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010320          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ..+...|++++|++.|+++.   .++..+|..+...|...|++++|++.|++..+.  -+-+...|..+..++.+.|+++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHH
Confidence            34466777777777776542   235666777777777777777777777777754  1345567777777777777777


Q ss_pred             HHHHHHHHHHHCC------------CC--C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010320          244 HMEAAFQEIKDSN------------LS--P-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM  293 (513)
Q Consensus       244 ~A~~~~~~m~~~g------------~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  293 (513)
                      +|+..|++.....            ..  + ...++..+..++.+.|++++|.+.|+...+....
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            7777777765421            00  1 1245556677788888888888888887774433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=8.5e-06  Score=60.75  Aligned_cols=93  Identities=10%  Similarity=-0.045  Sum_probs=76.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  452 (513)
                      -...+...|++++|+..|++.++.  .|.+...|..+..+|...|++++|++.+....+... .+...|..+..++...|
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHcc
Confidence            455677889999999999998874  455677888888899999999999999998887664 36777888888999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 010320          453 RVEEMESVLKEMENYK  468 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~  468 (513)
                      ++++|+..|++..+..
T Consensus        86 ~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             CHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999988754

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.30  E-value=0.00062  Score=58.56  Aligned_cols=229  Identities=11%  Similarity=-0.049  Sum_probs=116.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010320          225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYL  300 (513)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~  300 (513)
                      |+..+..|...+-+.+++++|++.|++..+.|   |...+-.|-..|..    ..+...|...++.....+   +.....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            34455566666666777777777777776654   44555555555554    346666666666665544   333333


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 010320          301 LLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV  376 (513)
Q Consensus       301 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  376 (513)
                      .+...+..    ..+.+.|...++...+.|..   .....+...+..                                .
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~--------------------------------~  119 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHD--------------------------------G  119 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHH--------------------------------C
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccC--------------------------------C
Confidence            33333332    33455566666555554321   111111111111                                0


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh--
Q 010320          377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS--  450 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~--  450 (513)
                      .........+...+......+    +...+..+...|..    ..+...+..+++...+.|   +......+-..|..  
T Consensus       120 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~  192 (265)
T d1ouva_         120 KVVTRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGE  192 (265)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred             CcccchhHHHHHHhhhhhccc----ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCc
Confidence            011223344444444433321    12223344444443    345555666666665554   23333333333433  


Q ss_pred             --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCC
Q 010320          451 --QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       451 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~  504 (513)
                        ..++++|...|+...+.|   +...+..|...|.+    ..+.++|.++|++..+.|.
T Consensus       193 ~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         193 GATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             ccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence              457777888887777766   34455556666654    3467778888877766664

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=9.5e-06  Score=64.36  Aligned_cols=119  Identities=11%  Similarity=-0.038  Sum_probs=93.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  452 (513)
                      ....|.+.|++++|+..|.+.++.  .|.+...|..+..+|...|++++|.+.|+++.+.... +...|..+..+|...|
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence            466778999999999999999985  4667788999999999999999999999999876633 6678899999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHHHHH
Q 010320          453 RVEEMESVLKEMENYKIDCSKKTFWIMYYA--YATCGQRRKVNQV  495 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~  495 (513)
                      ++++|...+++....+ +-+...+..+..+  ....+.+++|...
T Consensus        93 ~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          93 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999998865 3345555554433  3344456666544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=8.3e-06  Score=67.50  Aligned_cols=97  Identities=12%  Similarity=-0.044  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 010320          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTL  232 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~l  232 (513)
                      |+...+......|.+.|++++|+..|++..+..+.+...|+.+..+|.+.|++++|+..|++..+   +.| +..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHHH
Confidence            34445555555566666666666666665555544556666666666666666666666665553   233 34455555


Q ss_pred             HHHHHhcCChhHHHHHHHHHH
Q 010320          233 ISVFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       233 i~~~~~~g~~~~A~~~~~~m~  253 (513)
                      ..++.+.|++++|+..|++..
T Consensus        79 g~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            555555566666555555544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=1.3e-05  Score=66.29  Aligned_cols=98  Identities=7%  Similarity=-0.119  Sum_probs=57.5

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHH
Q 010320          224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLL  302 (513)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l  302 (513)
                      |+...+......+.+.|++++|+..|++.++... -+...|+.+..+|.+.|++++|+..|++..+  +.|+ ..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence            4445555555566666666666666666555432 2555566666666666666666666666654  2343 5556666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 010320          303 LRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       303 l~~~~~~g~~~~a~~~~~~~~~  324 (513)
                      ..+|...|++++|...|+...+
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            6666666666666666665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.16  E-value=1.1e-05  Score=59.56  Aligned_cols=87  Identities=11%  Similarity=-0.033  Sum_probs=47.6

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010320          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ..+.+.|++++|...|++.....+.+..+|..+..++.+.|++++|+..|++..+.  -+-+...|..+...|...|+++
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCCCHH
Confidence            34445555555655555555554445555555555555555555555555555542  1233455555555555555555


Q ss_pred             HHHHHHHHH
Q 010320          244 HMEAAFQEI  252 (513)
Q Consensus       244 ~A~~~~~~m  252 (513)
                      +|++.|++.
T Consensus       102 ~A~~~l~~~  110 (112)
T d1hxia_         102 AALASLRAW  110 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.14  E-value=0.0013  Score=57.98  Aligned_cols=281  Identities=10%  Similarity=0.012  Sum_probs=139.6

Q ss_pred             CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010320          154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI  233 (513)
Q Consensus       154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li  233 (513)
                      |+..-...+...|.+.|.++.|..+|..+.        -|..++..+.+.++++.|.+++.+.       -+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC--------CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHH
Confidence            444445556666667777777777776432        4666667777777777766665422       1455666666


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010320          234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP  313 (513)
Q Consensus       234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~  313 (513)
                      ..+.+......|     .+...+...+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .+
T Consensus        77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~  149 (336)
T d1b89a_          77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQ  149 (336)
T ss_dssp             HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HH
T ss_pred             HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hH
Confidence            666666554432     2222223345555556667777777777777777665432 1345556666666666643 22


Q ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010320          314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA  393 (513)
Q Consensus       314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  393 (513)
                         ++.+.+......-+..   .++..|-+.+-+.                       -++..|.+.|+++.|..+.   
T Consensus       150 ---kl~e~l~~~s~~y~~~---k~~~~c~~~~l~~-----------------------elv~Ly~~~~~~~~A~~~~---  197 (336)
T d1b89a_         150 ---KMREHLELFWSRVNIP---KVLRAAEQAHLWA-----------------------ELVFLYDKYEEYDNAIITM---  197 (336)
T ss_dssp             ---HHHHHHHHHSTTSCHH---HHHHHHHTTTCHH-----------------------HHHHHHHHTTCHHHHHHHH---
T ss_pred             ---HHHHHHHhccccCCHH---HHHHHHHHcCChH-----------------------HHHHHHHhcCCHHHHHHHH---
Confidence               2333333221111221   1233333333222                       2555666667776666543   


Q ss_pred             HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh-----------hHHHHHHHHHhcCCHHHHHHHHH
Q 010320          394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS-----------LYHSKMVMYASQRRVEEMESVLK  462 (513)
Q Consensus       394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-----------~~~~li~~~~~~g~~~~A~~~~~  462 (513)
                      ........+   ...++..+.+..+.+...+++....+..  |+..           --.-++..+-+.+++......++
T Consensus       198 i~~~~~~~~---~~~f~e~~~k~~N~e~~~~~i~~yL~~~--p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le  272 (336)
T d1b89a_         198 MNHPTDAWK---EGQFKDIITKVANVELYYRAIQFYLEFK--PLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLR  272 (336)
T ss_dssp             HHSTTTTCC---HHHHHHHHHHCSSTHHHHHHHHHHHHHC--GGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHH
T ss_pred             HHcchhhhh---HHHHHHHHHccCChHHHHHHHHHHHHcC--HHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHH
Confidence            222111111   2234455556666555555444433221  2110           01234455556666666666666


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010320          463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL  496 (513)
Q Consensus       463 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  496 (513)
                      .....|   +....+++...|...++++.-.+..
T Consensus       273 ~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         273 SVQNHN---NKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             HHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence            666555   3467889999999999876544433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.06  E-value=2.3e-05  Score=57.69  Aligned_cols=88  Identities=7%  Similarity=-0.119  Sum_probs=49.7

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010320          410 VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR  489 (513)
Q Consensus       410 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  489 (513)
                      ...+.+.|++++|...+++..+.... +...|..+..++.+.|++++|+..|++..+.+ +-+...|..+...|...|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence            33455556666666666655544322 35555555556666666666666666655544 33455566666666666666


Q ss_pred             hHHHHHHHHH
Q 010320          490 RKVNQVLGLM  499 (513)
Q Consensus       490 ~~A~~~~~~m  499 (513)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.7e-05  Score=59.28  Aligned_cols=24  Identities=17%  Similarity=0.153  Sum_probs=9.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHc
Q 010320          266 YLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       266 ~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      .+..+|.+.|++++|++.|+++.+
T Consensus        77 ~Lg~~y~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          77 YLAVGNYRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333344444444444444444433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.8e-05  Score=59.24  Aligned_cols=99  Identities=9%  Similarity=-0.066  Sum_probs=80.6

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 010320          160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS---DKCQSLFRDLKKEANISPS-IVTYNTLISV  235 (513)
Q Consensus       160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~g~~p~-~~~~~~li~~  235 (513)
                      ..++..+...+++++|.+.|+.....++.+..++..+..++.+.++.   ++|+++|+++... .-.|+ ..+|..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHH
Confidence            45777888899999999999999998888999999999999876654   5699999998753 21222 2367889999


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCH
Q 010320          236 FGRLLLVDHMEAAFQEIKDSNLSPNV  261 (513)
Q Consensus       236 ~~~~g~~~~A~~~~~~m~~~g~~p~~  261 (513)
                      |.+.|++++|++.|++..+.  .|+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~--~P~~  105 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT--EPQN  105 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHhhhHHHHHHHHHHHHh--CcCC
Confidence            99999999999999999985  4553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.91  E-value=0.0031  Score=53.87  Aligned_cols=228  Identities=9%  Similarity=-0.066  Sum_probs=134.3

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTY  264 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~  264 (513)
                      |+..+..|...+.+.+++++|++.|++..+. |   |...+..|...|..    ..+...|...++.....+   +....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence            4667888888899999999999999999864 4   66777777777776    568899999999988765   44555


Q ss_pred             HHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHH
Q 010320          265 NYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRA  336 (513)
Q Consensus       265 ~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~  336 (513)
                      ..+...+..    .++.+.|...++.....|.   ......+...+..    ......+...+......   .+...+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~  147 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTI  147 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhh
Confidence            555555443    4577889999998887663   2333333333332    23355555555554443   23444444


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh-
Q 010320          337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR-  415 (513)
Q Consensus       337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-  415 (513)
                      |...|.....                                ...+...+...++...+.+.    ......+...|.. 
T Consensus       148 L~~~~~~~~~--------------------------------~~~~~~~~~~~~~~a~~~g~----~~A~~~lg~~y~~g  191 (265)
T d1ouva_         148 LGSLYDAGRG--------------------------------TPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHG  191 (265)
T ss_dssp             HHHHHHHTSS--------------------------------SCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHT
T ss_pred             hhhhhccCCC--------------------------------cccccccchhhhhccccccc----cccccchhhhcccC
Confidence            4444433111                                11233333444444333321    1112223333332 


Q ss_pred             ---cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 010320          416 ---CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEMENYK  468 (513)
Q Consensus       416 ---~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~  468 (513)
                         ..+.+.|..+|.+..+.|   +...+..|...|.+    ..+.++|.+.|++..+.|
T Consensus       192 ~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         192 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             cccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence               456777777777776665   23344445555543    336667777777776666

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=0.00039  Score=55.26  Aligned_cols=96  Identities=7%  Similarity=-0.026  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010320          193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-------------IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP  259 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  259 (513)
                      +......+.+.|++++|+..|.+........+.             ..+|+.+..+|.+.|++++|+..+++.++... -
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p-~   94 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS-N   94 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc-c
Confidence            334445555666666666666555432111110             12334444445555555555555555554332 1


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320          260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +..+|..+..+|...|++++|+..|++..+
T Consensus        95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          95 NEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444555555555555555555555555544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.00039  Score=55.31  Aligned_cols=113  Identities=7%  Similarity=-0.083  Sum_probs=76.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCC-------------chHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh
Q 010320          374 IRVYAKEDCLEEMEKSINDAFEHKTSV-------------TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL  440 (513)
Q Consensus       374 i~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~  440 (513)
                      ...+.+.|++++|+..|.+.+..-...             ....+|+.+..+|.+.|++++|+..++...+.... +...
T Consensus        20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a   98 (170)
T d1p5qa1          20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKG   98 (170)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhh
Confidence            344555566666666665554321110             01245677888889999999999999998876632 6778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320          441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ  488 (513)
Q Consensus       441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  488 (513)
                      |..+..+|...|++++|...|++..+.+ +-|......+-....+.+.
T Consensus        99 ~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          99 LSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999998865 3355555555555444333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.00033  Score=52.66  Aligned_cols=95  Identities=11%  Similarity=0.059  Sum_probs=59.0

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHHHHHHH
Q 010320          160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-----IVTYNTLIS  234 (513)
Q Consensus       160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~~~~~li~  234 (513)
                      ..+...+.+.|++++|++.|++..+.++.+..+|..+..+|.+.|++++|++.++++.+..--.++     ..+|..+..
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            345556667777777777777777766666777777777777777777777777765532000011     134555666


Q ss_pred             HHHhcCChhHHHHHHHHHHH
Q 010320          235 VFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~~  254 (513)
                      .+...+++++|++.|++...
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            66666666667666666554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.70  E-value=0.00082  Score=52.21  Aligned_cols=63  Identities=10%  Similarity=-0.129  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320          262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH  325 (513)
Q Consensus       262 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  325 (513)
                      .+|+.+..+|.+.|++++|++.+++..+.. +.+..+|..+..++...|++++|...|+...+.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            355666666777777777777777666532 224666777777777777777777777766665

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=0.00038  Score=55.71  Aligned_cols=120  Identities=10%  Similarity=-0.026  Sum_probs=70.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR  452 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  452 (513)
                      ........|++++|.+.|.+.+.-...+.....         ..+.+  +...-..+..    .....+..+...+.+.|
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w--~~~~r~~l~~----~~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQF--VEPFATALVE----DKVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTT--HHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHH--HHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence            445667788999999999888774221110000         00000  0000011110    01234556677777777


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----HCCCCCCC
Q 010320          453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC-----KNGYDVPV  508 (513)
Q Consensus       453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~  508 (513)
                      ++++|+..++++.+.+ +-+...|..++.+|.+.|++++|++.|+++.     +.|+.|+.
T Consensus        82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            7777777777777665 5567777777777777777777777777763     35777654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.67  E-value=0.015  Score=51.00  Aligned_cols=283  Identities=8%  Similarity=0.006  Sum_probs=158.8

Q ss_pred             cCchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHH
Q 010320          117 HSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYN  194 (513)
Q Consensus       117 ~p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  194 (513)
                      .|+..-...+...|  .+.++.|..+|..+            .-|..++..+.+.++++.|.+++...     .+..+|.
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~------------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k   73 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWK   73 (336)
T ss_dssp             CC----------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhC------------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHH
Confidence            34444445555555  34677888888733            24778889999999999998887654     2678999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010320          195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA  274 (513)
Q Consensus       195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  274 (513)
                      .+...+.+......|     .+... +...+......++..|-..|.+++...+++..... -..+...++.++..|++.
T Consensus        74 ~~~~~l~~~~e~~la-----~i~~~-~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          74 EVCFACVDGKEFRLA-----QMCGL-HIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHHHHHTTCHHHH-----HHTTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCcHHHHH-----HHHHH-HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence            999999988776554     22222 34456777788999999999999999999987643 246888899999999986


Q ss_pred             cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHhcCC
Q 010320          275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV--------DGKEFPLIRAMICAYSKCSV  346 (513)
Q Consensus       275 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~  346 (513)
                      + .++..+.++....   .-|   ...++..|-+.+-++++.-++..+....        .++++.-....+..+.+..+
T Consensus       147 ~-~~kl~e~l~~~s~---~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N  219 (336)
T d1b89a_         147 K-PQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN  219 (336)
T ss_dssp             C-HHHHHHHHHHHST---TSC---HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSS
T ss_pred             C-hHHHHHHHHhccc---cCC---HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCC
Confidence            4 4454444443311   112   2344555666666655555554433210        01111112223333444444


Q ss_pred             hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHH
Q 010320          347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV  426 (513)
Q Consensus       347 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  426 (513)
                      .+...++..                    .|... +.+-...++..+...   .+    ...++..+.+.+++.....++
T Consensus       220 ~e~~~~~i~--------------------~yL~~-~p~~i~~lL~~v~~~---~d----~~r~V~~~~k~~~l~li~p~L  271 (336)
T d1b89a_         220 VELYYRAIQ--------------------FYLEF-KPLLLNDLLMVLSPR---LD----HTRAVNYFSKVKQLPLVKPYL  271 (336)
T ss_dssp             THHHHHHHH--------------------HHHHH-CGGGHHHHHHHHGGG---CC----HHHHHHHHHHTTCTTTTHHHH
T ss_pred             hHHHHHHHH--------------------HHHHc-CHHHHHHHHHHhccC---CC----HHHHHHHHHhcCCcHHHHHHH
Confidence            443333322                    22221 111111122111111   11    122444555566666666666


Q ss_pred             HHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHH
Q 010320          427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL  461 (513)
Q Consensus       427 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  461 (513)
                      +.....+   +....+++.+.|...++++.-.+..
T Consensus       272 e~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         272 RSVQNHN---NKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             HHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence            6665555   3467889999999999976544433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00062  Score=51.09  Aligned_cols=95  Identities=8%  Similarity=-0.008  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC-----HHHHHH
Q 010320          193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS-PN-----VFTYNY  266 (513)
Q Consensus       193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-----~~~~~~  266 (513)
                      +..+...+.+.|++++|++.|++..+.  .+.+...|..+..+|.+.|++++|+..++++++.... ++     ..+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            445566677777777777777777654  2345666777777777777777777777776642110 01     134555


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHc
Q 010320          267 LIAGYMTAWMWGKVEEIYQMMKA  289 (513)
Q Consensus       267 li~~~~~~g~~~~a~~~~~~m~~  289 (513)
                      +...+...+++++|++.|++...
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHh
Confidence            55566666666666666665543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=0.00091  Score=53.42  Aligned_cols=120  Identities=9%  Similarity=-0.026  Sum_probs=72.5

Q ss_pred             HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010320          164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD  243 (513)
Q Consensus       164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~  243 (513)
                      ......|++++|.+.|.+......-+..         ......+.+...-..+...     ....+..+...+.+.|+++
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l---------~~~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVL---------DDLRDFQFVEPFATALVED-----KVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTT---------GGGTTSTTHHHHHHHHHHH-----HHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCccccc---------ccCcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCch
Confidence            4556778888888888877663211110         0001111122222222221     2345666777777778888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCCCCHHH
Q 010320          244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVMPDTNT  298 (513)
Q Consensus       244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t  298 (513)
                      +|+..++++.+... -+...|..+|.+|.+.|+.++|++.|+++..     -|+.|+..+
T Consensus        85 ~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          85 AVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            88887777776544 3677777778888888888888777777633     477777655

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.54  E-value=0.0019  Score=50.95  Aligned_cols=95  Identities=6%  Similarity=0.012  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320          404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY  483 (513)
Q Consensus       404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~  483 (513)
                      .+|+.+..+|.+.|++++|+..++....... .+...|..+..+|...|++++|...|++....+ +.+...+..+-...
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3466677888999999999999999887653 467788888899999999999999999998865 44555555555555


Q ss_pred             HhcCCHh-HHHHHHHHHH
Q 010320          484 ATCGQRR-KVNQVLGLMC  500 (513)
Q Consensus       484 ~~~g~~~-~A~~~~~~m~  500 (513)
                      .+.+... ...+++..|.
T Consensus       143 ~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHH
Confidence            4444432 3445555553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.53  E-value=9.2e-05  Score=63.62  Aligned_cols=53  Identities=13%  Similarity=0.095  Sum_probs=39.2

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010320          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE  219 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  219 (513)
                      .+.|++++|++.+++..+..+.|...+..+...++..|++++|.+.|+...+.
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            45677777777777777776667777777777777777777777777777653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.52  E-value=0.00066  Score=53.84  Aligned_cols=81  Identities=6%  Similarity=-0.072  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320          402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY  481 (513)
Q Consensus       402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~  481 (513)
                      ....|..+..++.+.|++++|+..+..+.+... -+...|..+..+|.+.|++++|...|+...+.+ +.+...+..+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~  153 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            455667777888888888888888888876653 356778888888888888888888888888765 345555555554


Q ss_pred             HHH
Q 010320          482 AYA  484 (513)
Q Consensus       482 ~~~  484 (513)
                      +..
T Consensus       154 ~~~  156 (169)
T d1ihga1         154 VKQ  156 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.50  E-value=0.0033  Score=48.56  Aligned_cols=103  Identities=8%  Similarity=-0.045  Sum_probs=73.2

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---CC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010320          190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS---PS-----------IVTYNTLISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~---p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      ...+..-...+.+.|++++|+..|.+........   ++           ..+|+.+..+|.+.|++++|++.+++.++.
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            4456666777888888888888888877532111   11           235566777778888888888888887776


Q ss_pred             CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010320          256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD  295 (513)
Q Consensus       256 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  295 (513)
                      .. .+..+|..+..++...|++++|+..|++..+  +.|+
T Consensus        97 ~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~  133 (153)
T d2fbna1          97 DK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPN  133 (153)
T ss_dssp             ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTT
T ss_pred             cc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence            43 3677888888888888888888888888776  3454

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.49  E-value=0.0003  Score=54.21  Aligned_cols=72  Identities=6%  Similarity=-0.063  Sum_probs=49.7

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC----------ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG----------LSDKCQSLFRDLKKEANISPSIVTYNTLISVF  236 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~  236 (513)
                      -+.+.+++|++.|+...+..+.+..++..+..++...+          .+++|+..|++..+.  -+-+..+|..+..+|
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHHHH
Confidence            45567888999999888887778888888887776543          346677777777653  133456666666666


Q ss_pred             HhcC
Q 010320          237 GRLL  240 (513)
Q Consensus       237 ~~~g  240 (513)
                      ...|
T Consensus        86 ~~~g   89 (145)
T d1zu2a1          86 TSFA   89 (145)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            5543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.49  E-value=0.0014  Score=51.92  Aligned_cols=92  Identities=5%  Similarity=-0.104  Sum_probs=45.4

Q ss_pred             HHHHHhcccCCHHHHHHHHHHHHhccC---------------C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 010320          161 KGIKFAGRINNVDLAADLFAEAANKHL---------------K-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP  224 (513)
Q Consensus       161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~---------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p  224 (513)
                      .....+.+.|++++|++.|.+..+...               + ....|+.+..++.+.|++++|+..|++..+.  -+-
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~  109 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPS  109 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--hhh
Confidence            344555677788888777776543100               0 2233444444444555555555555554432  122


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010320          225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKD  254 (513)
Q Consensus       225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  254 (513)
                      +..+|..+..++.+.|+++.|+..|++..+
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            334444455555555555555555554444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.45  E-value=0.0061  Score=47.88  Aligned_cols=95  Identities=6%  Similarity=-0.127  Sum_probs=48.5

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHhccC---C------------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 010320          159 YTKGIKFAGRINNVDLAADLFAEAANKHL---K------------TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS  223 (513)
Q Consensus       159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~  223 (513)
                      +......+.+.|++++|...|++....-.   .            ....|+.+..+|.+.|++++|+..++...+.  -+
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~p   95 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--DS   95 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc--cc
Confidence            34455566677777777777766543110   0            0122333444455555555555555555543  13


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010320          224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS  255 (513)
Q Consensus       224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  255 (513)
                      .+..+|..+..++...|++++|+..|++..+.
T Consensus        96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34445555555555555555555555555543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.42  E-value=0.00016  Score=62.00  Aligned_cols=123  Identities=4%  Similarity=-0.069  Sum_probs=79.7

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH
Q 010320          377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE  456 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  456 (513)
                      ..+.|++++|+..+++.++  ..|.+...+..+...++..|++++|.+.++...+.... +...+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHH
Confidence            3467999999999999888  45667788899999999999999999999998865522 23334333333332222222


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320          457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN  502 (513)
Q Consensus       457 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  502 (513)
                      +..-...-...+-+++...+......+...|+.++|.+++++..+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            2211111111111223334445567788899999999999988665

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.40  E-value=0.00062  Score=52.34  Aligned_cols=117  Identities=7%  Similarity=0.026  Sum_probs=81.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010320          377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC----------NAVDKLANFVKRAESAGWRLCRSLYHSKMV  446 (513)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  446 (513)
                      |-+.+.+++|++.|+..++.  .|.+...+..+..+|...          +.+++|++.++++.+.... +..+|..+..
T Consensus         7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~   83 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN   83 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHH
Confidence            34556788888888888874  455666777777777643          4557788888888766533 5667777777


Q ss_pred             HHHhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010320          447 MYASQR-----------RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY  504 (513)
Q Consensus       447 ~~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  504 (513)
                      +|...|           .+++|.+.|++..+.  .|+...|...+..+      ..|.+++.+..+.|+
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            776544           368888889888874  46666666555444      456788888888775

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00013  Score=69.47  Aligned_cols=226  Identities=9%  Similarity=-0.078  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHccCHHHHHHHHH
Q 010320          208 KCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV-FTYNYLIAGYMTAWMWGKVEEIYQ  285 (513)
Q Consensus       208 ~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~  285 (513)
                      +|.+.|++..+-   +||. ..+..+..++...|++++|   |++++...  |+. ..++.  ....-...+..+.+.++
T Consensus         4 eA~q~~~qA~~l---~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~--e~~Lw~~~y~~~ie~~r   73 (497)
T d1ya0a1           4 QSAQYLRQAEVL---KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV--EQDLWNHAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHH---HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH--HHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH--HHHHHHHHHHHHHHHHH
Confidence            677888887753   5553 4566677777777877765   67766532  221 11221  11111122456777777


Q ss_pred             HHHcCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 010320          286 MMKAGPVMPDTNTYLLLLRGY--AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK  363 (513)
Q Consensus       286 ~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  363 (513)
                      ...+..-.++..-....+..+  ...+.++.++..+....+. .+++...+..+...+.+.|+.+.|...++....... 
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-  151 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV-DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-  151 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHH-
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-
Confidence            777654344432222222222  2233444444444333322 123455666777777777777666544322211111 


Q ss_pred             CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHH
Q 010320          364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS  443 (513)
Q Consensus       364 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~  443 (513)
                         ......+...+...|++++|...|++..+.  .|.+...|+.+...+...|+..+|...|.+..... .|...++..
T Consensus       152 ---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~n  225 (497)
T d1ya0a1         152 ---QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTN  225 (497)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHH
T ss_pred             ---HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence               011224777888889999999999988884  45566779999999999999999999999888655 456777777


Q ss_pred             HHHHHHhc
Q 010320          444 KMVMYASQ  451 (513)
Q Consensus       444 li~~~~~~  451 (513)
                      |...|.+.
T Consensus       226 L~~~~~~~  233 (497)
T d1ya0a1         226 LQKALSKA  233 (497)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77776543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00037  Score=66.26  Aligned_cols=211  Identities=6%  Similarity=-0.123  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010320          136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD  215 (513)
Q Consensus       136 ~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  215 (513)
                      +|.+.|+...+...    -....+..+-.++...|++++|   |+++...++.....++..-  ..-...+..+.+.++.
T Consensus         4 eA~q~~~qA~~l~p----~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~--~Lw~~~y~~~ie~~r~   74 (497)
T d1ya0a1           4 QSAQYLRQAEVLKA----DMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQ--DLWNHAFKNQITTLQG   74 (497)
T ss_dssp             HHHHHHHHHHHHHG----GGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHH--HHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC----CCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHH--HHHHHHHHHHHHHHHH
Confidence            35566665554321    1233344455555555666554   5555543221112222111  1111224556666666


Q ss_pred             HHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010320          216 LKKEANISPSIVTYNTLISV--FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM  293 (513)
Q Consensus       216 m~~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  293 (513)
                      ..+. ...++..-....+..  ....+.++.|+..++...+..+ ++...+..+...+.+.|+.++|...++......  
T Consensus        75 ~~k~-~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--  150 (497)
T d1ya0a1          75 QAKN-RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--  150 (497)
T ss_dssp             HHSC-SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred             hccc-ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence            6543 222332222221111  1223344444444443332221 345567777777778888888887776654411  


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 010320          294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP  361 (513)
Q Consensus       294 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  361 (513)
                       ...++..+...+...|++++|...|++..+. .+.+...|+.|...|...|+..+|...+..-....
T Consensus       151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~  216 (497)
T d1ya0a1         151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence             1356777788888888888888888888776 34566778888888888888777665554443333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.10  E-value=0.006  Score=47.19  Aligned_cols=62  Identities=16%  Similarity=0.118  Sum_probs=29.6

Q ss_pred             HHHHH--HHHHHHcCChHHHHHHHHHHHHhCCCCCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010320          192 TYNAL--LGAYMYNGLSDKCQSLFRDLKKEANISPS----------IVTYNTLISVFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       192 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~g~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~  253 (513)
                      +|..+  ...+...|++++|+..|++...-..-.|+          ...|+.+..+|.+.|++++|...+++..
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            44444  33444556666666666665532111111          2344445555555555555554444443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.80  E-value=0.015  Score=44.75  Aligned_cols=98  Identities=10%  Similarity=-0.064  Sum_probs=66.6

Q ss_pred             HHHHHH--HHHHHhcCChhHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHcC---
Q 010320          227 VTYNTL--ISVFGRLLLVDHMEAAFQEIKDSNL-SPN----------VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG---  290 (513)
Q Consensus       227 ~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  290 (513)
                      .+|..+  ...+.+.|++++|+..|++.++... .|+          ..+|+.+..+|.+.|++++|.+.+++....   
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            355555  4455677889999998888875211 121          356788888888888888888888776541   


Q ss_pred             --CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010320          291 --PVMPD-----TNTYLLLLRGYAHSGNLPRMEKIYELVKH  324 (513)
Q Consensus       291 --g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  324 (513)
                        ...++     ...+..+..+|...|++++|...|++..+
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              12222     23466677888888888888888877654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.02  Score=39.64  Aligned_cols=26  Identities=27%  Similarity=0.132  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHH
Q 010320          192 TYNALLGAYMYNGLSDKCQSLFRDLK  217 (513)
Q Consensus       192 ~~~~li~~~~~~g~~~~A~~~~~~m~  217 (513)
                      +++.|..++.+.|++++|++.+++..
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL   73 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLL   73 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHH
Confidence            34444444444444444444444444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.022  Score=39.45  Aligned_cols=79  Identities=6%  Similarity=-0.125  Sum_probs=58.9

Q ss_pred             CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010320          189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA----NISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT  263 (513)
Q Consensus       189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  263 (513)
                      +...+-.+...+.+.|++++|+..|++..+..    ...++ ..+++.|..++.+.|++++|+..+++.++..+. +..+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a   82 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA   82 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence            34455677888899999999999998876531    11222 468999999999999999999999999986532 4556


Q ss_pred             HHHHH
Q 010320          264 YNYLI  268 (513)
Q Consensus       264 ~~~li  268 (513)
                      ++.+-
T Consensus        83 ~~Nl~   87 (95)
T d1tjca_          83 NGNLK   87 (95)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.12  E-value=0.12  Score=38.04  Aligned_cols=113  Identities=11%  Similarity=0.085  Sum_probs=75.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHH
Q 010320          381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEE  456 (513)
Q Consensus       381 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~  456 (513)
                      .++++|.++|++..+.+....    ...|.  .....+.++|.+++++..+.|.   ......|-..|..    ..+.++
T Consensus         7 kd~~~A~~~~~kaa~~g~~~a----~~~l~--~~~~~~~~~a~~~~~~aa~~g~---~~a~~~Lg~~y~~g~~~~~d~~~   77 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEMFG----CLSLV--SNSQINKQKLFQYLSKACELNS---GNGCRFLGDFYENGKYVKKDLRK   77 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTH----HHHHH--TCTTSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHHCCChhh----hhhhc--cccccCHHHHHHHHhhhhcccc---hhhhhhHHHhhhhccccchhhHH
Confidence            367788888888777654321    22222  2345678889999888877773   3344445455543    567889


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC
Q 010320          457 MESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       457 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~  505 (513)
                      |.++|++..+.|   +......|...|..    ..+.++|.++|++..+.|..
T Consensus        78 A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          78 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            999999988877   33445556556655    46788999999998888753

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.93  E-value=0.16  Score=36.14  Aligned_cols=123  Identities=12%  Similarity=0.157  Sum_probs=86.1

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-CC----------------cccHhh
Q 010320          378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA-GW----------------RLCRSL  440 (513)
Q Consensus       378 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~----------------~p~~~~  440 (513)
                      .-.|.+++..+++.+.....    +..-||-+|--....-+-+-..++++.+-.. .+                .-+...
T Consensus        13 ildG~ve~Gveii~k~~~ss----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~   88 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH   88 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred             HHhhhHHhHHHHHHHHcccC----CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHH
Confidence            34467777777777766532    2223555555555555555555655554221 11                123344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010320          441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD  505 (513)
Q Consensus       441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  505 (513)
                      ++.-++.+..+|+-+.-.++++++.+.+ ++++...-.+..+|.+-|...++-+++.+.-+.|++
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            6677888899999999999999987755 788898999999999999999999999999999975

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.97  E-value=0.38  Score=34.23  Aligned_cols=139  Identities=8%  Similarity=-0.035  Sum_probs=85.7

Q ss_pred             cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010320          167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME  246 (513)
Q Consensus       167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~  246 (513)
                      .-.|.+++..++..+....  .+..-||.+|--....-+-+...++++.+-+-+.+              ..++++....
T Consensus        13 ildG~ve~Gveii~k~~~s--s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~vv   76 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKS--STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV   76 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred             HHhhhHHhHHHHHHHHccc--CCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHHHH
Confidence            3456677777777666553  25556666666666666666666666655432211              1233333333


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010320          247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  326 (513)
                      .-+-.+-     .+...++..++.+.+.|+-++-.++++++.+.+ ++++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus        77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            3332221     244456667777778888888888888866643 6677777788888888888888888888777766


Q ss_pred             C
Q 010320          327 D  327 (513)
Q Consensus       327 ~  327 (513)
                      .
T Consensus       151 ~  151 (161)
T d1wy6a1         151 E  151 (161)
T ss_dssp             C
T ss_pred             H
Confidence            5

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.15  E-value=0.69  Score=33.69  Aligned_cols=48  Identities=17%  Similarity=0.010  Sum_probs=21.6

Q ss_pred             CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcc
Q 010320          276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH----SGNLPRMEKIYELVKHHV  326 (513)
Q Consensus       276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~  326 (513)
                      +.++|.++|++..+.|   +...+..|...|..    ..+.++|.+.|+...+.|
T Consensus        74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            3455555555554443   23333333333333    234555555555544443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.03  E-value=1.4  Score=29.50  Aligned_cols=62  Identities=15%  Similarity=0.150  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010320          137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG  198 (513)
Q Consensus       137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~  198 (513)
                      ..++-..|...-+....|++.+..+.+++|-|.+++..|.++|+-++.+.-.+...|..+++
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq   83 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ   83 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            33444444444455567777777777777777777777777777776543333445555543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=90.43  E-value=5.9  Score=35.54  Aligned_cols=122  Identities=6%  Similarity=-0.185  Sum_probs=78.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh------------cCCcccH--
Q 010320          373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES------------AGWRLCR--  438 (513)
Q Consensus       373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------~~~~p~~--  438 (513)
                      .+......+++..+...+..+.......  ..-.--+..++...|+.+.|..+|..+..            .|.+++.  
T Consensus       291 ~~~~al~~~~~~~~~~~~~~l~~~~~~~--~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~  368 (450)
T d1qsaa1         291 RVRMALGTGDRRGLNTWLARLPMEAKEK--DEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKI  368 (450)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHSCTTGGGS--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHcCChHHHHHHHHhcCcccccH--HHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCc
Confidence            3444456677888877777664322221  22223456777778888888887776532            1211100  


Q ss_pred             --------hh-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320          439 --------SL-----YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM  499 (513)
Q Consensus       439 --------~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  499 (513)
                              ..     -..-+..+...|+..+|...|..+.+.   .+......+.....+.|.++.|+....+.
T Consensus       369 ~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         369 DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence                    00     112356677899999999999988753   25566778888899999999998776654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.87  E-value=2.2  Score=30.29  Aligned_cols=60  Identities=3%  Similarity=-0.133  Sum_probs=36.4

Q ss_pred             HHHHHHhc---CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010320          409 IVSSYFRC---NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK  468 (513)
Q Consensus       409 li~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  468 (513)
                      ...++.++   .+.++++.+++++.+.+..-....+-.|..+|.+.|++++|.+.++.+.+..
T Consensus        41 YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          41 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            44455544   3455677777777654421112344556667777888888888887777643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.73  E-value=2.6  Score=29.86  Aligned_cols=19  Identities=5%  Similarity=-0.214  Sum_probs=7.6

Q ss_pred             HHHhcCChhHHHHHHHHHH
Q 010320          235 VFGRLLLVDHMEAAFQEIK  253 (513)
Q Consensus       235 ~~~~~g~~~~A~~~~~~m~  253 (513)
                      +|.+.|+++.|.+.++.++
T Consensus        82 ~yyklgdy~~A~~~~~~~L  100 (124)
T d2pqrb1          82 GCYKLGEYSMAKRYVDTLF  100 (124)
T ss_dssp             HHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHH
Confidence            3333444444444444333

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.60  E-value=3.6  Score=27.49  Aligned_cols=61  Identities=13%  Similarity=0.141  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010320          277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI  338 (513)
Q Consensus       277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  338 (513)
                      .-++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+-++.... .+...|..++
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~-~~k~~y~yil   82 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI   82 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence            335566666666667778888888888888888888888888877765422 2233454443