Citrus Sinensis ID: 010332

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
MMMEESESDSHSRQPELLEVGKHDSEDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTWLSNLCFDDEFCERPAIDDALTKDTAQRFDKFVHRLSLRALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKFWVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWAQTSQEKLKQCQELLMFERASKFCQVEFL
cccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHcccHHHHcccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcccccccEEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEEEccccHHHHHHcccccccEEEEEEEEEcccEEEEEEEcccccEEEEEEEccccccccccccEEEcccccEEEEEEcccccccEEccccccEEEEEEEEcccccccccccccccHHHHHHHHHccccEEEEEEEEHHHHHHHHccccccccccccccEEEEEEccccHHHHHHHHcccccccEEEEEccccccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHcccccccccEEEEc
cccccccccEEcccccccccccccccccHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEEcccccEEEEcccccccccccccEEEcccEEEEEEEEEEEccccccccccHHHcEEEEEEEEcccHHHHHHHHcccHHHEEEEEEEccccccEEEEEEEccccEEEEEEEccccccccccccEEEEEcccEEEEEEEccccccEEEEcccccEEEEEEEEEcccccccccccccccHcHHHHHHHHHHcccEEEEccccEEEEEcccccccccccccEEEEEEccccHHHHHHHHHHccccccEEEEEcccccccccccccccccHccccEEEEEEEcccccHHHHHHHHHHHHHcHHHEEEEEEEcccccHHHHHHHHHHHcccccccccEEEEc
mmmeesesdshsrqpellevgkhdsedrisrlpdpilcHILSFLPAKHAVATRILSSRWNLVWTWLSnlcfddefcerpaiddalTKDTAQRFDKFVHRlslraldplfgltntfagmnayprigfEDFVNWVLDRTNSATLAKFSLqcsnltdlslLKFWVSSAIMRNVREIEIYLESHglhtlfyfferqdpvelpeslctsttLEVLVLYSDfvinippsglcfpclkfLHIEmyclpnnlterlfsacpvleeLSIVGLLVNADVvtnfnissptlkklgirfdigdqgssynehkilirapnlerfhIIDHALVSYMVHELHSLTEAFIdvsyfewpspsyverplpQAKRVLELLEGVNEIKFMSLSAETMFALDLayedffptfpnltylEVHIGGTSWKLLLAILNSLPNLEVLLIHShavrdsgfifeepvprcllFHVKKIemrsfggyehEFQLVKYFLKNIVSLEKLIVKSWAQTSQEKLKQCQELLMFERAskfcqvefl
mmmeesesdshsrqpELLEVGKHDSEDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTWLSNLCFDDEFCERPAIDDALTKDTAQRFDKFVHRLSLRALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKFWVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFnissptlkklgIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWAQTSQEKLKQCQELLMFERASKFCQVEFL
mmmeesesdsHSRQPELLEVGKHDSEDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTWLSNLCFDDEFCERPAIDDALTKDTAQRFDKFVHRLSLRALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKFWVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKlllailnslpnlEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWAQTSQEKLKQCQELLMFERASKFCQVEFL
*******************************LPDPILCHILSFLPAKHAVATRILSSRWNLVWTWLSNLCFDDEFCERPAIDDALTKDTAQRFDKFVHRLSLRALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKFWVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWAQTSQEKLKQCQELLMFERASKFCQV***
*****************************SRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTWLSNLCFDDEFCERPAIDDALTKDTAQRFDKFVHRLSLRALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKFWVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWAQTSQEKLKQCQELLMFERASKFCQVEFL
***************ELLEVGKHDSEDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTWLSNLCFDDEFCERPAIDDALTKDTAQRFDKFVHRLSLRALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKFWVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWAQTSQEKLKQCQELLMFERASKFCQVEFL
**************************DRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTWLSNLCFDDEFCERPAIDDALTKDTAQRFDKFVHRLSLRALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKFWVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWAQTSQEKLKQCQELLMFERASKFCQVEFL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMMEESESDSHSRQPELLEVGKHDSEDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTWLSNLCFDDEFCERPAIDDALTKDTAQRFDKFVHRLSLRALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKFWVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRDSGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWAQTSQEKLKQCQELLMFERASKFCQVEFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query513 2.2.26 [Sep-21-2011]
Q9SCQ5427 Putative FBD-associated F yes no 0.789 0.948 0.294 5e-36
Q9ZV93458 F-box/FBD/LRR-repeat prot no no 0.844 0.945 0.266 3e-32
Q9FZ52449 F-box/FBD/LRR-repeat prot no no 0.816 0.933 0.287 9e-32
Q9FNI8466 FBD-associated F-box prot no no 0.832 0.916 0.257 2e-28
Q9FWZ1451 F-box/LRR-repeat protein no no 0.834 0.949 0.266 3e-28
Q8GXW6482 F-box/LRR-repeat protein no no 0.797 0.848 0.263 1e-27
Q1PED9388 F-box/LRR-repeat protein no no 0.672 0.889 0.285 3e-27
Q9FJV2418 Putative FBD-associated F no no 0.787 0.966 0.263 3e-27
Q8H1M0442 F-box/FBD/LRR-repeat prot no no 0.814 0.945 0.261 7e-27
P0C2G0403 F-box/LRR-repeat protein no no 0.721 0.918 0.280 2e-26
>sp|Q9SCQ5|FBD10_ARATH Putative FBD-associated F-box protein At3g50710 OS=Arabidopsis thaliana GN=At3g50710 PE=4 SV=1 Back     alignment and function desciption
 Score =  152 bits (385), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 148/502 (29%), Positives = 225/502 (44%), Gaps = 97/502 (19%)

Query: 27  DRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTWLSNLCFDDEFCERPAIDDALT 86
           DRIS L D +L  I+S LP K  V T +LS RW  +W  +  L FDDEF   P+      
Sbjct: 2   DRISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEFELEPSY----- 56

Query: 87  KDTAQRFDKFVHRLSLRALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLAKFS 146
                RF K+V +                               + VL+R       KF+
Sbjct: 57  ---YGRFLKYVDK-------------------------------SMVLNRAQVLETVKFN 82

Query: 147 LQ-CSNLTDLSLLKFWVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTST 205
           +  C +  D++    W+   ++RN+RE+EI       H   YF E +  ++LP+SL T  
Sbjct: 83  VGPCCSSEDIAT---WIRIGMVRNMRELEIS------HCEGYFREHRS-IKLPKSLYTYE 132

Query: 206 TLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTE---RLFSACPVLEELSIVG 262
            LEVL L S  V+N+P   +CFP LK LH  + C+     +   RL S CPVLEEL ++ 
Sbjct: 133 KLEVLKLASTVVLNVP-IDVCFPSLKSLH--LVCVEYKTKKSHRRLLSGCPVLEEL-VLD 188

Query: 263 LLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYM 322
              N+  V +F +  PTL+ L I   +   G  Y +   ++ AP L+ F+ +D      +
Sbjct: 189 KSYNSFHVRSFYVEIPTLQSLSI---LDTSGELYGDFTFVVNAPALKYFNFVDFYGDLCL 245

Query: 323 VHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDL 382
              +  + +  I V Y    +P  +  PL   KR+            + LS  T     +
Sbjct: 246 RDNMPEVVDVNIKVIY---RNPKKLLGPLKSVKRL-----------SLCLSPSTTLHNHM 291

Query: 383 AYEDFFPTFPNLTYLEVHIGGTS---WKLLLAILNSLPNLEVLLIHSHAVRDSGFI---- 435
                   F  L +LE  + G +   W LL  +L S P L+VL I+     +  ++    
Sbjct: 292 E-------FYQLVHLE--LCGDALMWWDLLTWMLQSSPKLQVLKIYECKCEEHDYLDDPI 342

Query: 436 ---FEEP--VPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLI--VKSWAQTS 488
              +EEP  VP+CLLFH+   E + +   + E ++V Y LKN   L+       S+    
Sbjct: 343 EEHWEEPSSVPQCLLFHLNIFEWKYYNAGDEEKKVVAYILKNARQLKTATFSAASYLYPK 402

Query: 489 QEKLKQCQELLMFERASKFCQV 510
           +E+ ++  EL+   RAS  CQ+
Sbjct: 403 EERSRELNELVYMARASSSCQL 424

Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750 OS=Arabidopsis thaliana GN=At1g78750 PE=2 SV=1 Back     alignment and function description
>sp|Q9FZ52|FDL3_ARATH F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana GN=At1g16930 PE=2 SV=1 Back     alignment and function description
>sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana GN=At5g22730 PE=2 SV=2 Back     alignment and function description
>sp|Q9FWZ1|FBL13_ARATH F-box/LRR-repeat protein 13 OS=Arabidopsis thaliana GN=FBL13 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXW6|FBL59_ARATH F-box/LRR-repeat protein At3g58930 OS=Arabidopsis thaliana GN=At3g58930 PE=2 SV=1 Back     alignment and function description
>sp|Q1PED9|FBL63_ARATH F-box/LRR-repeat protein At3g59190 OS=Arabidopsis thaliana GN=At3g59190 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJV2|FBD27_ARATH Putative FBD-associated F-box protein At5g56560 OS=Arabidopsis thaliana GN=At5g56560 PE=4 SV=2 Back     alignment and function description
>sp|Q8H1M0|FDL16_ARATH F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana GN=At2g26030 PE=2 SV=2 Back     alignment and function description
>sp|P0C2G0|FBL27_ARATH F-box/LRR-repeat protein At1g06630 OS=Arabidopsis thaliana GN=At1g06630 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query513
147812093607 hypothetical protein VITISV_040899 [Viti 0.846 0.714 0.323 9e-48
296086770411 unnamed protein product [Vitis vinifera] 0.748 0.934 0.289 4e-41
297819758426 F-box family protein [Arabidopsis lyrata 0.789 0.950 0.299 2e-35
15229834427 putative FBD-associated F-box protein [A 0.789 0.948 0.294 3e-34
15219161458 F-box/FBD/LRR-repeat protein [Arabidopsi 0.844 0.945 0.266 2e-30
297844624452 F-box family protein [Arabidopsis lyrata 0.822 0.933 0.285 3e-30
224114976462 predicted protein [Populus trichocarpa] 0.834 0.926 0.288 3e-30
15219959449 F-box/RNI-like/FBD-like domains-containi 0.816 0.933 0.287 6e-30
383101004530 F-box family protein [Arabidopsis haller 0.820 0.794 0.283 2e-28
296086764348 unnamed protein product [Vitis vinifera] 0.631 0.931 0.313 2e-28
>gi|147812093|emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 162/501 (32%), Positives = 246/501 (49%), Gaps = 67/501 (13%)

Query: 24  DSEDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTWLSNLCFDDEFCERPAIDD 83
           +S D IS LPD +LCHILSFLP K AV T ILS RW  +W  +  L FDDE    P+   
Sbjct: 7   ESRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPS--- 63

Query: 84  ALTKDTAQRFDKFVHRLSLRALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLA 143
                T    ++ +                          I F++FV+ VL  +  + + 
Sbjct: 64  -----TLVELEERI--------------------------IMFQNFVDGVLRHSEVSCIK 92

Query: 144 KFSLQCSNLTDLSLLKFWVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCT 203
           KF L   +  +L  +  W+  A+ R V+E++       LH L  +      VELP     
Sbjct: 93  KFRLGYRD-NNLDSVYSWICIALERRVQELD-------LHLLIDW-----RVELPPMFFI 139

Query: 204 STTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLT-ERLFSACPVLEELSIVG 262
             TL V+ L     ++IP + +  P LK LH++     ++ + ++L S CPVLEEL I  
Sbjct: 140 CKTLVVVKLSCALFLDIPTT-VWLPSLKALHLKSVEYSDDDSIQKLLSGCPVLEELVIER 198

Query: 263 LLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSY----NEHKILIRAPNLERFHIIDHAL 318
              +   V N  +S+P+LK L I F        Y     ++K+++ APNLE   I D+  
Sbjct: 199 EERDNQWVVN--VSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDAPNLEYLSITDYLS 256

Query: 319 VSYMVHELHSLTEAFIDVSYFEWPSPSYVERP----LPQAKRVLELLEGVNEIKFMSLSA 374
             Y V +L SL +AFIDV   E  S  + E P    +     + ELL  ++ +K +SL+ 
Sbjct: 257 KDYFVKDLPSLVKAFIDV---EQDSEEFEESPHNGGISYHGPIYELLGRISNVKCLSLTG 313

Query: 375 ETMFALDLAYEDF-FPTFPNLTYLE-VHIGGTSWKLLLAILNSLPNLEVLLIHSHAVRD- 431
            T+ +L     D+  PTF N+T LE + IGG +W  L   L+S PNLE L+I +    + 
Sbjct: 314 VTLDSLSGTIGDYKLPTFHNMTRLEFLFIGGFNWDFLPNFLHSSPNLEALVIETGYTNEL 373

Query: 432 --SGFIFEEPVPRCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWAQTSQ 489
              G++    VP CL+ H+K+IE+R   G ++E + V+Y LKN   L+++ +        
Sbjct: 374 IPEGWLMPLQVPACLVLHLKEIEIRRIVGEDYELEAVEYLLKNAEVLQQMTIDCHESYMD 433

Query: 490 EKLKQCQELLMFERASKFCQV 510
           ++   C++LL   R S+ C V
Sbjct: 434 QEFCVCKKLLGLPRGSRSCFV 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086770|emb|CBI32919.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297819758|ref|XP_002877762.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297323600|gb|EFH54021.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15229834|ref|NP_190640.1| putative FBD-associated F-box protein [Arabidopsis thaliana] gi|75265626|sp|Q9SCQ5.1|FBD10_ARATH RecName: Full=Putative FBD-associated F-box protein At3g50710 gi|6561974|emb|CAB62440.1| putative protein [Arabidopsis thaliana] gi|332645179|gb|AEE78700.1| putative FBD-associated F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15219161|ref|NP_177996.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75268062|sp|Q9ZV93.1|FDL10_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At1g78750 gi|3834319|gb|AAC83035.1| Similar to gi|2244754 heat shock transcription factor HSF30 homolog from Arabidopsis thaliana chromosome 4 contig gb|Z97335 [Arabidopsis thaliana] gi|332198025|gb|AEE36146.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297844624|ref|XP_002890193.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297336035|gb|EFH66452.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224114976|ref|XP_002316907.1| predicted protein [Populus trichocarpa] gi|222859972|gb|EEE97519.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15219959|ref|NP_173137.1| F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana] gi|75263252|sp|Q9FZ52.1|FDL3_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At1g16930 gi|9802769|gb|AAF99838.1|AC051629_5 Hypothetical protein [Arabidopsis thaliana] gi|332191402|gb|AEE29523.1| F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|383101004|emb|CCD74546.1| F-box family protein [Arabidopsis halleri subsp. halleri] Back     alignment and taxonomy information
>gi|296086764|emb|CBI32913.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query513
TAIR|locus:2101674427 AT3G50710 "AT3G50710" [Arabido 0.580 0.697 0.284 3e-29
TAIR|locus:2015681449 AT1G16930 "AT1G16930" [Arabido 0.697 0.797 0.282 5.1e-29
TAIR|locus:2037578458 AT1G78750 "AT1G78750" [Arabido 0.748 0.838 0.261 6.1e-29
TAIR|locus:2155327438 AT5G44950 "AT5G44950" [Arabido 0.723 0.847 0.272 2.4e-27
TAIR|locus:2162489450 AT5G22660 "AT5G22660" [Arabido 0.701 0.8 0.259 3.4e-26
TAIR|locus:2162499443 AT5G22670 "AT5G22670" [Arabido 0.744 0.862 0.251 9.5e-26
TAIR|locus:2099119482 AT3G58930 "AT3G58930" [Arabido 0.670 0.713 0.252 2e-25
TAIR|locus:2161073430 AT5G56440 "AT5G56440" [Arabido 0.378 0.451 0.299 2.1e-25
TAIR|locus:2162484466 AT5G22730 "AT5G22730" [Arabido 0.756 0.832 0.240 1.2e-24
TAIR|locus:2162454437 AT5G22700 "AT5G22700" [Arabido 0.690 0.810 0.253 2e-24
TAIR|locus:2101674 AT3G50710 "AT3G50710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 259 (96.2 bits), Expect = 3.0e-29, Sum P(2) = 3.0e-29
 Identities = 98/344 (28%), Positives = 155/344 (45%)

Query:   183 HTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPPSGLCFPCLKFLHIEMYCLPN 242
             H   YF E +  ++LP+SL T   LEVL L S  V+N+P   +CFP LK LH+   C+  
Sbjct:   111 HCEGYFREHRS-IKLPKSLYTYEKLEVLKLASTVVLNVPID-VCFPSLKSLHL--VCVEY 166

Query:   243 NLTE---RLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSSYNEH 299
                +   RL S CPVLEEL ++    N+  V +F +  PTL+ L I   +   G  Y + 
Sbjct:   167 KTKKSHRRLLSGCPVLEEL-VLDKSYNSFHVRSFYVEIPTLQSLSI---LDTSGELYGDF 222

Query:   300 KILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPLPQAKRVLE 359
               ++ AP L+ F+ +D      +   +  + +  I V Y    +P  +  PL   KR+  
Sbjct:   223 TFVVNAPALKYFNFVDFYGDLCLRDNMPEVVDVNIKVIY---RNPKKLLGPLKSVKRLS- 278

Query:   360 LLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTS--WKXXXXXXXXXX 417
                       + LS  T     +   +F+     L +LE+  G     W           
Sbjct:   279 ----------LCLSPSTTLHNHM---EFY----QLVHLEL-CGDALMWWDLLTWMLQSSP 320

Query:   418 XXEVLLIHSHAVRDSGFI-------FEEP--VPRCLLFHVKKIEMRSFGGYEHEFQLVKY 468
               +VL I+     +  ++       +EEP  VP+CLLFH+   E + +   + E ++V Y
Sbjct:   321 KLQVLKIYECKCEEHDYLDDPIEEHWEEPSSVPQCLLFHLNIFEWKYYNAGDEEKKVVAY 380

Query:   469 FLKNIVSLEKLIVK--SWAQTSQEKLKQCQELLMFERASKFCQV 510
              LKN   L+       S+    +E+ ++  EL+   RAS  CQ+
Sbjct:   381 ILKNARQLKTATFSAASYLYPKEERSRELNELVYMARASSSCQL 424
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155327 AT5G44950 "AT5G44950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162489 AT5G22660 "AT5G22660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162499 AT5G22670 "AT5G22670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099119 AT3G58930 "AT3G58930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161073 AT5G56440 "AT5G56440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162484 AT5G22730 "AT5G22730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162454 AT5G22700 "AT5G22700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.5__1411__AT3G50710.1
annotation not avaliable (426 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
smart0057972 smart00579, FBD, domain in FBox and BRCT domain co 3e-15
pfam0838751 pfam08387, FBD, FBD 1e-08
pfam0064648 pfam00646, F-box, F-box domain 2e-04
>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins Back     alignment and domain information 
 Score = 70.3 bits (173), Expect = 3e-15
 Identities = 31/72 (43%), Positives = 45/72 (62%)

Query: 442 RCLLFHVKKIEMRSFGGYEHEFQLVKYFLKNIVSLEKLIVKSWAQTSQEKLKQCQELLMF 501
            CLL  ++ +E++ + G E E +LVKYFL+N   L+KL +       +EKL+  +ELL  
Sbjct: 1   ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSL 60

Query: 502 ERASKFCQVEFL 513
            RAS  CQV+FL
Sbjct: 61  PRASSSCQVQFL 72

Length = 72
>gnl|CDD|203925 pfam08387, FBD, FBD Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 513
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.47
smart0057972 FBD domain in FBox and BRCT domain containing plan 99.43
KOG4341483 consensus F-box protein containing LRR [General fu 99.4
PF0838751 FBD: FBD; InterPro: IPR013596 This region is found 99.12
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.65
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 98.61
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 98.39
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 98.39
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.22
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 98.14
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 98.13
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 98.12
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.09
PLN03210 1153 Resistant to P. syringae 6; Provisional 97.97
PLN03210 1153 Resistant to P. syringae 6; Provisional 97.95
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 97.91
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 97.84
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.78
KOG4341483 consensus F-box protein containing LRR [General fu 97.63
KOG2982418 consensus Uncharacterized conserved protein [Funct 97.51
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 97.38
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 97.28
KOG1947482 consensus Leucine rich repeat proteins, some prote 97.22
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 97.0
PF0772326 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le 96.9
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 96.86
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 96.75
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 96.74
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 96.71
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 96.7
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 96.69
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 96.67
KOG1947482 consensus Leucine rich repeat proteins, some prote 96.64
KOG1259490 consensus Nischarin, modulator of integrin alpha5 96.5
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 96.49
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 96.38
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 96.12
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 95.93
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 95.23
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 95.17
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 94.85
KOG0281499 consensus Beta-TrCP (transducin repeats containing 94.82
KOG4237498 consensus Extracellular matrix protein slit, conta 94.66
KOG0617264 consensus Ras suppressor protein (contains leucine 93.89
KOG0617264 consensus Ras suppressor protein (contains leucine 93.21
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 92.97
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 92.87
KOG2982 418 consensus Uncharacterized conserved protein [Funct 92.8
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 91.91
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 91.55
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 91.53
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 91.41
KOG2997366 consensus F-box protein FBX9 [General function pre 90.91
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 90.81
PLN03150623 hypothetical protein; Provisional 90.31
KOG2123 388 consensus Uncharacterized conserved protein [Funct 88.94
PRK15386426 type III secretion protein GogB; Provisional 88.76
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 88.33
KOG1259490 consensus Nischarin, modulator of integrin alpha5 87.77
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 86.83
PLN03150623 hypothetical protein; Provisional 86.56
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 85.39
KOG0472565 consensus Leucine-rich repeat protein [Function un 83.63
PF13013109 F-box-like_2: F-box-like domain 83.32
KOG2123388 consensus Uncharacterized conserved protein [Funct 81.13
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 80.89
KOG0472565 consensus Leucine-rich repeat protein [Function un 80.47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.47  E-value=5.8e-15  Score=136.90  Aligned_cols=292  Identities=17%  Similarity=0.154  Sum_probs=165.4

Q ss_pred             CCCcccCCCChHHHHHHhcCCchhhhhhhhhhhhhhHHhhcc---CcceEeecCCCCCccchhhhhhhhhhhHHHHhhhh
Q 010332           24 DSEDRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTW---LSNLCFDDEFCERPAIDDALTKDTAQRFDKFVHRL  100 (513)
Q Consensus        24 ~~~D~is~LPd~iL~~Ils~Lp~kda~rts~lSrRWr~lw~~---~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  100 (513)
                      ++.. +..|||||+..||+.|+.|+..+.+.|||||.++-..   .-.+++.+..+.+            ....+.+.  
T Consensus        94 pgv~-~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p------------~~l~~l~~--  158 (419)
T KOG2120|consen   94 PGVS-WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP------------DVLGRLLS--  158 (419)
T ss_pred             CCCC-cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh------------hHHHHHHh--
Confidence            3444 6789999999999999999999999999999975321   1235555555531            11122221  


Q ss_pred             cccccCccccccccccCCCCCCCcccccccccccccccccceeEEEeccCCCCCchhHHHHHHHHHhCCceEEEEEeecC
Q 010332          101 SLRALDPLFGLTNTFAGMNAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKFWVSSAIMRNVREIEIYLESH  180 (513)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~  180 (513)
                                         +|            +.      .|++.-...   +...+.... ...+.+++.+++.-+.-
T Consensus       159 -------------------rg------------V~------v~Rlar~~~---~~prlae~~-~~frsRlq~lDLS~s~i  197 (419)
T KOG2120|consen  159 -------------------RG------------VI------VFRLARSFM---DQPRLAEHF-SPFRSRLQHLDLSNSVI  197 (419)
T ss_pred             -------------------CC------------eE------EEEcchhhh---cCchhhhhh-hhhhhhhHHhhcchhhe
Confidence                               11            23      333332111   111111111 12334677777761110


Q ss_pred             CccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccC-CCccccCCcceEEeeeEE-eCcchHHHHhhcCCcccee
Q 010332          181 GLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIP-PSGLCFPCLKFLHIEMYC-LPNNLTERLFSACPVLEEL  258 (513)
Q Consensus       181 ~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~-~~~~~~~~Lk~L~L~~~~-~~~~~l~~lls~cp~Le~L  258 (513)
                               .   .-.+-.-+..|..|+.|+|-|..+.+-. ..-+.-.+|+.|+|+.+. ++...++-++++|..|.+|
T Consensus       198 ---------t---~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  198 ---------T---VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             ---------e---HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence                     0   1122222345899999999999987711 112356789999999886 5668899999999999999


Q ss_pred             EeeeeeeccCCceeEEEe--cCccceEEEEeecCCCCCCCCcceEEEeCCceeEEEEEeccccceeeccCCCeeEEEEEE
Q 010332          259 SIVGLLVNADVVTNFNIS--SPTLKKLGIRFDIGDQGSSYNEHKILIRAPNLERFHIIDHALVSYMVHELHSLTEAFIDV  336 (513)
Q Consensus       259 ~L~~~c~~~~~~~~l~i~--~~~Lr~L~i~~~~~~~~~~~~~~~i~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~  336 (513)
                      +| ..|......-.+.|+  +++|+.|.+++|...+. .+...-+.-.+|+|..|+++++..                  
T Consensus       266 Nl-sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~-~sh~~tL~~rcp~l~~LDLSD~v~------------------  325 (419)
T KOG2120|consen  266 NL-SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ-KSHLSTLVRRCPNLVHLDLSDSVM------------------  325 (419)
T ss_pred             Cc-hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh-hhHHHHHHHhCCceeeeccccccc------------------
Confidence            99 988641111111122  46777777777622211 112222333556666666665521                  


Q ss_pred             EeecCCCCCccCCCCchhhHHHHHccCCCcceEEEEEcchhhhhhhhccC---CCCCcCcccEEEEEeccCCHHHHHHHH
Q 010332          337 SYFEWPSPSYVERPLPQAKRVLELLEGVNEIKFMSLSAETMFALDLAYED---FFPTFPNLTYLEVHIGGTSWKLLLAIL  413 (513)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~---~~p~~~~Lk~L~l~~~~~~~~~l~~lL  413 (513)
                                      ....+...+-.++.+++|.++-+..     +.+.   .+...+.|.+|++..+..+ ..+.-+.
T Consensus       326 ----------------l~~~~~~~~~kf~~L~~lSlsRCY~-----i~p~~~~~l~s~psl~yLdv~g~vsd-t~mel~~  383 (419)
T KOG2120|consen  326 ----------------LKNDCFQEFFKFNYLQHLSLSRCYD-----IIPETLLELNSKPSLVYLDVFGCVSD-TTMELLK  383 (419)
T ss_pred             ----------------cCchHHHHHHhcchheeeehhhhcC-----CChHHeeeeccCcceEEEEeccccCc-hHHHHHH
Confidence                            1113444455566667666664332     2222   2446667777777665332 3455556


Q ss_pred             hcCCCcceEEEE
Q 010332          414 NSLPNLEVLLIH  425 (513)
Q Consensus       414 ~~~P~Le~L~i~  425 (513)
                      ..||+|+.-.-.
T Consensus       384 e~~~~lkin~q~  395 (419)
T KOG2120|consen  384 EMLSHLKINCQH  395 (419)
T ss_pred             HhCcccccccee
Confidence            677776654443

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 9e-08
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 2e-04
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 63.3 bits (153), Expect = 1e-10
 Identities = 70/457 (15%), Positives = 122/457 (26%), Gaps = 160/457 (35%)

Query: 66  LSNLC--FDDEFCERPAIDDALTKDTAQRFDKFVHRLSLRALDPLFGLTNTFAGMNAYPR 123
           L  L    D  +  R      +      R       L       L            Y  
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIK----LRIHSIQAELRR-----LLKSKP-------YEN 245

Query: 124 --IGFEDFVNWVLDRT-NSATLAKFSLQCSNL--T-DLSLLKFWVSSAIMRNVREIEIYL 177
             +        VL    N+     F+L C  L  T    +  F +S+A   ++       
Sbjct: 246 CLL--------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLDH--- 293

Query: 178 ESHGLH-----TLFYFFERQDPVELPESLCT----------------------------- 203
            S  L      +L   +    P +LP  + T                             
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 204 ------STTLEVLV------LYSDFVINIPPSGLCFPCLKFLHIEMYCLPNNLTERLFSA 251
                  ++L VL       ++    +        FP     HI     P  L   ++  
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSV--------FP--PSAHI-----PTILLSLIWFD 398

Query: 252 CPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRFDIGDQGSS-YNEHKILIRAPNLER 310
               + + +V  L    +V        T+    I  ++  +  + Y  H+ ++   N+ +
Sbjct: 399 VIKSDVMVVVNKLHKYSLV-EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 311 -----------------FHIIDHALVSYMVHELHSLTEAFIDVSYFEWPSPSYVERPL-- 351
                             HI  H         +      F+D   F +     +E+ +  
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD---FRF-----LEQKIRH 509

Query: 352 --PQAKRVLELLEGVNEIKFMSLSAETMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLL 409
                     +L  + ++KF              Y+ +     N    E        +L+
Sbjct: 510 DSTAWNASGSILNTLQQLKF--------------YKPYI--CDNDPKYE--------RLV 545

Query: 410 LAILNSLPNLEVLLIHSHAVR--------DSGFIFEE 438
            AIL+ LP +E  LI S            +   IFEE
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query513
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 99.81
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 99.81
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.72
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.13
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.04
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 99.04
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 98.96
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 98.93
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 98.91
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 98.83
4fmz_A347 Internalin; leucine rich repeat, structural genomi 98.82
4fmz_A347 Internalin; leucine rich repeat, structural genomi 98.81
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 98.8
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 98.79
1o6v_A466 Internalin A; bacterial infection, extracellular r 98.79
1o6v_A 466 Internalin A; bacterial infection, extracellular r 98.78
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 98.74
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 98.73
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 98.73
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 98.69
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.69
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 98.68
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 98.68
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 98.67
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 98.66
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 98.65
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 98.65
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 98.63
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 98.62
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 98.62
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 98.61
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 98.61
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 98.6
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 98.59
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 98.59
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 98.58
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 98.57
2z7x_B 520 TOLL-like receptor 1, variable lymphocyte recepto; 98.57
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 98.57
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 98.57
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 98.54
1z7x_W 461 Ribonuclease inhibitor; leucine-rich repeat, enzym 98.54
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 98.54
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 98.54
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 98.54
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 98.53
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 98.5
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 98.5
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 98.49
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 98.48
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 98.48
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 98.47
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 98.47
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 98.46
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 98.45
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 98.45
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 98.43
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 98.42
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 98.42
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 98.41
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 98.41
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 98.39
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 98.39
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 98.39
3bz5_A 457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 98.35
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 98.35
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 98.34
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 98.34
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 98.33
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 98.32
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 98.3
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 98.29
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 98.29
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 98.28
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 98.25
3a79_B 562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 98.24
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 98.24
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 98.23
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 98.22
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 98.22
4ezg_A197 Putative uncharacterized protein; internalin-A, le 98.2
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 98.19
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 98.19
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 98.18
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 98.17
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 98.16
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 98.14
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 98.14
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 98.13
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 98.11
4ezg_A197 Putative uncharacterized protein; internalin-A, le 98.01
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 97.99
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 97.97
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 97.96
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 97.95
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 97.93
3m19_A251 Variable lymphocyte receptor A diversity region; a 97.93
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 97.92
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 97.92
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 97.9
3m19_A251 Variable lymphocyte receptor A diversity region; a 97.84
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 97.8
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.79
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 97.78
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 97.76
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 97.73
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 97.69
4g8a_A 635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 97.68
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 97.66
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 97.66
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 97.62
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 97.61
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 97.56
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 97.55
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 97.52
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 97.5
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 97.49
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 97.48
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 97.47
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.45
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 97.44
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 97.39
3e6j_A229 Variable lymphocyte receptor diversity region; var 97.37
3e6j_A229 Variable lymphocyte receptor diversity region; var 97.26
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 97.21
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 97.2
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 97.2
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.18
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 97.15
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 97.14
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.1
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 97.07
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 96.88
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 96.78
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 96.77
1w8a_A192 SLIT protein; signaling protein, secreted protein, 96.76
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 96.72
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 96.69
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 96.69
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 96.69
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 96.53
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 96.42
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 96.41
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 96.35
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 96.28
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 96.02
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 95.97
4fdw_A401 Leucine rich hypothetical protein; putative cell s 95.94
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 95.94
1w8a_A192 SLIT protein; signaling protein, secreted protein, 95.85
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 95.53
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 95.47
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 95.4
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 95.22
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 92.68
4fdw_A401 Leucine rich hypothetical protein; putative cell s 92.08
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 91.9
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 88.1
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 87.57
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 83.99
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 81.07
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
Probab=99.81  E-value=5.6e-20  Score=197.34  Aligned_cols=216  Identities=13%  Similarity=0.108  Sum_probs=115.8

Q ss_pred             CCcccC----CCChHHHHHHhcCC-chhhhhhhhhhhhhhHHhhccCcc-eEeecCCCCCccchhhhhhhhhhhHHHHhh
Q 010332           25 SEDRIS----RLPDPILCHILSFL-PAKHAVATRILSSRWNLVWTWLSN-LCFDDEFCERPAIDDALTKDTAQRFDKFVH   98 (513)
Q Consensus        25 ~~D~is----~LPd~iL~~Ils~L-p~kda~rts~lSrRWr~lw~~~p~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   98 (513)
                      ++||++    +||||++.+||+|| |++|++++++|||||++++...+. +.+.. .+.  ..        ...   +..
T Consensus         5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~--~~--------~~~---~~~   70 (592)
T 3ogk_B            5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYT--AT--------PDR---LSR   70 (592)
T ss_dssp             -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGG--SC--------HHH---HHH
T ss_pred             hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccc--cC--------hHH---HHH
Confidence            356665    89999999999999 899999999999999998654432 22211 110  00        011   111


Q ss_pred             hh-cccccCc--ccc----------cccc----ccCC-CCCCCcccccccccccccccccceeEEEeccCCCCCchhHHH
Q 010332           99 RL-SLRALDP--LFG----------LTNT----FAGM-NAYPRIGFEDFVNWVLDRTNSATLAKFSLQCSNLTDLSLLKF  160 (513)
Q Consensus        99 ~~-~~~~~~~--~~~----------~~~~----~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~  160 (513)
                      ++ ..+.++.  +..          +.+.    +... ...+.          ++      .+.++...    -.+..-.
T Consensus        71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----------L~------~L~L~~~~----i~~~~~~  130 (592)
T 3ogk_B           71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ----------LK------SVHFRRMI----VSDLDLD  130 (592)
T ss_dssp             HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT----------CC------EEEEESCB----CCHHHHH
T ss_pred             hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC----------CC------eEEeeccE----ecHHHHH
Confidence            11 1110000  000          0000    0000 01122          44      55554321    1233445


Q ss_pred             HHHHHHhCCceEEEEEeecCCccceeeccCCCcccccCCCCcCCCcccEEEEeeeeccccCC-----CccccCCcceEEe
Q 010332          161 WVSSAIMRNVREIEIYLESHGLHTLFYFFERQDPVELPESLCTSTTLEVLVLYSDFVINIPP-----SGLCFPCLKFLHI  235 (513)
Q Consensus       161 wl~~a~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~-----~~~~~~~Lk~L~L  235 (513)
                      |+......++++|++.-          +..- ....++..+..|++|++|+|.+|.+.+...     ...++++|++|+|
T Consensus       131 ~l~~~~~~~L~~L~L~~----------~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L  199 (592)
T 3ogk_B          131 RLAKARADDLETLKLDK----------CSGF-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF  199 (592)
T ss_dssp             HHHHHHGGGCCEEEEES----------CEEE-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEEC
T ss_pred             HHHHhccccCcEEECcC----------CCCc-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEe
Confidence            55555455688888761          1000 011222223357888888888887654211     1236888888888


Q ss_pred             eeEEeC---cchHHHHhhcCCccceeEeeeeeeccCCceeEEEecCccceEEEEe
Q 010332          236 EMYCLP---NNLTERLFSACPVLEELSIVGLLVNADVVTNFNISSPTLKKLGIRF  287 (513)
Q Consensus       236 ~~~~~~---~~~l~~lls~cp~Le~L~L~~~c~~~~~~~~l~i~~~~Lr~L~i~~  287 (513)
                      .++.+.   ...+..++.+||.|+.|.| ..|.. .++.......++|+.|.+..
T Consensus       200 ~~n~~~~~~~~~l~~~~~~~~~L~~L~L-~~~~~-~~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          200 YMTEFAKISPKDLETIARNCRSLVSVKV-GDFEI-LELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             TTCCCSSCCHHHHHHHHHHCTTCCEEEC-SSCBG-GGGHHHHHHCTTCCEEEECB
T ss_pred             eccCCCccCHHHHHHHHhhCCCCcEEec-cCccH-HHHHHHHhhhhHHHhhcccc
Confidence            888776   3677888888999999999 77765 33332323346677777754
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 513
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 3e-06
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 9e-06
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 0.002
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 11/83 (13%)

Query: 27  DRISRLPDPILCHILSFLPAKHAVATRILSSRWNLVWTWLSNLCFDDEF----CERPAID 82
           D IS LP  +  ++LSFL  K  +        W         L  D+      C+   ID
Sbjct: 17  DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWR-------ILAEDNLLWREKCKEEGID 69

Query: 83  DALTKDTAQRFDKFVHRLSLRAL 105
           + L     +           ++ 
Sbjct: 70  EPLHIKRRKVIKPGFIHSPWKSA 92
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query513
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 98.99
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.92
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 98.84
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.6
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.56
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 98.34
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 98.32
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.23
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.2
d1p9ag_266 von Willebrand factor binding domain of glycoprote 98.09
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 98.09
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.07
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 98.04
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 97.99
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 97.98
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 97.83
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 97.79
d1p9ag_266 von Willebrand factor binding domain of glycoprote 97.73
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 97.69
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 97.69
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 97.67
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 97.5
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 97.5
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 97.25
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 97.24
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 97.12
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 97.11
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 97.08
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 97.03
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 96.92
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 96.48
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 96.23
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 96.04
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 96.02
d2ifga3156 High affinity nerve growth factor receptor, N-term 95.84
d1z7xw1 460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 95.31
d2ifga3156 High affinity nerve growth factor receptor, N-term 94.04
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 94.0
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 92.5
d1z7xw1 460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 92.37
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 92.23
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 91.48
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 88.63
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 86.78
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 85.38
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 82.33
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5e-12  Score=120.17  Aligned_cols=198  Identities=13%  Similarity=0.064  Sum_probs=105.0

Q ss_pred             cCCCcccEEEEeeeeccc--cCCCccccCCcceEEeeeEEeCcchHHHHhhcCCccceeEeeeeeec--cCCceeEEEec
Q 010332          202 CTSTTLEVLVLYSDFVIN--IPPSGLCFPCLKFLHIEMYCLPNNLTERLFSACPVLEELSIVGLLVN--ADVVTNFNISS  277 (513)
Q Consensus       202 ~~~~~L~~L~L~~~~l~~--~~~~~~~~~~Lk~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~~c~~--~~~~~~l~i~~  277 (513)
                      +...+|++|+|++|.+..  +......|++|++|+|.++.+++..+.. +..||.|++|++ .+|..  +.++..+.-.+
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L-s~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNL-SGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEEC-TTCBSCCHHHHHHHHHHC
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccc-cccccccccccchhhHHH
Confidence            345678888888887643  1112346888999999888877655554 567888999998 77743  11222222345


Q ss_pred             CccceEEEEeecCCCCCCCCc-ceEEEeCCceeEEEEEecccc--c----eeeccCCCeeEEEEEEEeecCCCCCccCCC
Q 010332          278 PTLKKLGIRFDIGDQGSSYNE-HKILIRAPNLERFHIIDHALV--S----YMVHELHSLTEAFIDVSYFEWPSPSYVERP  350 (513)
Q Consensus       278 ~~Lr~L~i~~~~~~~~~~~~~-~~i~i~ap~L~~L~l~~~~~~--~----~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~  350 (513)
                      ++|+.|.+.+|  ....+... ..+...+++|+.|.+.|+...  .    ....++|+|+++++..+.            
T Consensus       121 ~~L~~L~ls~c--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~------------  186 (284)
T d2astb2         121 SRLDELNLSWC--FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV------------  186 (284)
T ss_dssp             TTCCEEECCCC--TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT------------
T ss_pred             Hhccccccccc--cccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc------------
Confidence            78888888776  21111111 112223577888888765311  0    112345666666553211            


Q ss_pred             CchhhHHHHHccCCCcceEEEEEcc-hhhhhhhhccCCCCCcCcccEEEEEeccCCHHHHHHHHhcCCCcc
Q 010332          351 LPQAKRVLELLEGVNEIKFMSLSAE-TMFALDLAYEDFFPTFPNLTYLEVHIGGTSWKLLLAILNSLPNLE  420 (513)
Q Consensus       351 ~~~~~~~~~~l~~l~~l~~L~l~~~-~~~~~~~~~~~~~p~~~~Lk~L~l~~~~~~~~~l~~lL~~~P~Le  420 (513)
                       .........+..++++++|.++.+ .+..   .....+..+++|+.|++..+ ....++..+.+.||+|+
T Consensus       187 -~itd~~~~~l~~~~~L~~L~L~~C~~i~~---~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         187 -MLKNDCFQEFFQLNYLQHLSLSRCYDIIP---ETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             -TCCGGGGGGGGGCTTCCEEECTTCTTCCG---GGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             -CCCchhhhhhcccCcCCEEECCCCCCCCh---HHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence             011112223345566666666553 1211   01111334556666666443 22234455555666655
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure